Multiple sequence alignment - TraesCS4A01G099800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G099800 chr4A 100.000 2636 0 0 1 2636 112698366 112695731 0.000000e+00 4868.0
1 TraesCS4A01G099800 chr4D 97.535 1136 20 4 739 1870 352807725 352808856 0.000000e+00 1936.0
2 TraesCS4A01G099800 chr4D 93.433 533 30 5 2105 2635 352809202 352809731 0.000000e+00 785.0
3 TraesCS4A01G099800 chr4B 95.641 1124 29 8 739 1853 436318948 436320060 0.000000e+00 1786.0
4 TraesCS4A01G099800 chr4B 85.971 278 35 4 2360 2633 436341432 436341709 7.140000e-76 294.0
5 TraesCS4A01G099800 chr4B 94.340 53 3 0 2105 2157 436324876 436324928 6.050000e-12 82.4
6 TraesCS4A01G099800 chr7B 83.333 654 96 10 2 650 603584476 603585121 2.260000e-165 592.0
7 TraesCS4A01G099800 chr6A 96.970 33 1 0 1872 1904 180393072 180393040 3.670000e-04 56.5
8 TraesCS4A01G099800 chr2A 96.875 32 1 0 2055 2086 608618595 608618564 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G099800 chr4A 112695731 112698366 2635 True 4868.0 4868 100.000 1 2636 1 chr4A.!!$R1 2635
1 TraesCS4A01G099800 chr4D 352807725 352809731 2006 False 1360.5 1936 95.484 739 2635 2 chr4D.!!$F1 1896
2 TraesCS4A01G099800 chr4B 436318948 436320060 1112 False 1786.0 1786 95.641 739 1853 1 chr4B.!!$F1 1114
3 TraesCS4A01G099800 chr7B 603584476 603585121 645 False 592.0 592 83.333 2 650 1 chr7B.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 498 0.032952 TGAGACAAACGGGTCCTTCG 59.967 55.0 1.22 0.0 38.59 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 2234 0.106469 TGGGTTACACCAAGCTTGCA 60.106 50.0 21.43 7.93 41.02 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 41 6.977502 GTCATAGATCTGAATCCATATGTCCG 59.022 42.308 5.18 0.00 31.78 4.79
39 43 4.163427 AGATCTGAATCCATATGTCCGGT 58.837 43.478 0.00 0.00 31.78 5.28
47 51 2.897326 TCCATATGTCCGGTGTATCCAG 59.103 50.000 0.00 0.00 35.57 3.86
54 58 0.249120 CCGGTGTATCCAGCTTGACA 59.751 55.000 0.00 0.00 36.93 3.58
57 61 2.292267 GGTGTATCCAGCTTGACATGG 58.708 52.381 0.00 0.00 36.16 3.66
63 67 1.003355 CAGCTTGACATGGGACGGT 60.003 57.895 0.00 0.00 0.00 4.83
66 70 0.605319 GCTTGACATGGGACGGTTGA 60.605 55.000 0.00 0.00 0.00 3.18
68 72 0.762418 TTGACATGGGACGGTTGAGT 59.238 50.000 0.00 0.00 0.00 3.41
69 73 0.762418 TGACATGGGACGGTTGAGTT 59.238 50.000 0.00 0.00 0.00 3.01
78 82 2.527100 GACGGTTGAGTTACTCCATCG 58.473 52.381 15.96 15.96 0.00 3.84
80 84 3.084039 ACGGTTGAGTTACTCCATCGTA 58.916 45.455 20.58 0.00 31.04 3.43
86 90 1.761198 AGTTACTCCATCGTAAGGGGC 59.239 52.381 0.00 0.00 38.47 5.80
87 91 1.483415 GTTACTCCATCGTAAGGGGCA 59.517 52.381 0.00 0.00 38.47 5.36
93 97 2.976185 TCCATCGTAAGGGGCAATGATA 59.024 45.455 0.00 0.00 38.47 2.15
96 100 3.916359 TCGTAAGGGGCAATGATAACA 57.084 42.857 0.00 0.00 38.47 2.41
98 102 2.290641 CGTAAGGGGCAATGATAACAGC 59.709 50.000 0.00 0.00 0.00 4.40
102 106 1.476488 GGGGCAATGATAACAGCGTTT 59.524 47.619 0.00 0.00 0.00 3.60
105 109 2.163412 GGCAATGATAACAGCGTTTCCA 59.837 45.455 0.00 0.33 0.00 3.53
146 150 3.840666 TCTTGCATTACTCTCTCCCAGTT 59.159 43.478 0.00 0.00 0.00 3.16
147 151 5.023452 TCTTGCATTACTCTCTCCCAGTTA 58.977 41.667 0.00 0.00 0.00 2.24
151 155 3.839323 TTACTCTCTCCCAGTTACCCA 57.161 47.619 0.00 0.00 0.00 4.51
155 159 0.909610 CTCTCCCAGTTACCCAGGCA 60.910 60.000 0.00 0.00 0.00 4.75
156 160 1.198759 TCTCCCAGTTACCCAGGCAC 61.199 60.000 0.00 0.00 0.00 5.01
162 166 1.673337 GTTACCCAGGCACCGGAAC 60.673 63.158 9.46 0.00 0.00 3.62
167 171 2.594303 CAGGCACCGGAACTGCAA 60.594 61.111 9.46 0.00 36.27 4.08
168 172 2.192861 CAGGCACCGGAACTGCAAA 61.193 57.895 9.46 0.00 36.27 3.68
174 178 2.151202 CACCGGAACTGCAAAGTGTAT 58.849 47.619 9.46 0.00 0.00 2.29
176 180 3.938963 CACCGGAACTGCAAAGTGTATAT 59.061 43.478 9.46 0.00 0.00 0.86
177 181 5.113383 CACCGGAACTGCAAAGTGTATATA 58.887 41.667 9.46 0.00 0.00 0.86
182 186 7.011950 CCGGAACTGCAAAGTGTATATATTTGA 59.988 37.037 0.00 0.00 36.28 2.69
189 193 7.012327 TGCAAAGTGTATATATTTGACTCCAGC 59.988 37.037 10.23 0.00 36.28 4.85
192 196 5.304614 AGTGTATATATTTGACTCCAGCGGT 59.695 40.000 0.00 0.00 0.00 5.68
195 199 7.654520 GTGTATATATTTGACTCCAGCGGTTTA 59.345 37.037 0.00 0.00 0.00 2.01
207 211 3.502211 CCAGCGGTTTAAACTTGACATCT 59.498 43.478 17.50 2.92 0.00 2.90
222 226 3.386078 TGACATCTTGAGCTAGATCCCAC 59.614 47.826 5.36 0.00 32.60 4.61
228 232 2.659897 GCTAGATCCCACGCAGCG 60.660 66.667 14.82 14.82 0.00 5.18
237 241 2.202260 CACGCAGCGCTCATGTTG 60.202 61.111 16.61 0.00 0.00 3.33
272 277 6.062258 GCCCTGGCTATAGGTTTATCAATA 57.938 41.667 0.00 0.00 36.02 1.90
275 280 7.583416 GCCCTGGCTATAGGTTTATCAATATGA 60.583 40.741 0.00 0.00 36.02 2.15
278 283 8.771920 TGGCTATAGGTTTATCAATATGAACG 57.228 34.615 1.04 0.00 33.51 3.95
281 286 7.274904 GCTATAGGTTTATCAATATGAACGCGA 59.725 37.037 15.93 0.00 33.51 5.87
284 289 4.025229 GGTTTATCAATATGAACGCGAGCA 60.025 41.667 15.93 11.04 33.51 4.26
289 294 2.389713 ATATGAACGCGAGCAATTGC 57.610 45.000 23.05 23.05 42.49 3.56
309 314 1.822990 CCAACCATCTTGCTGCATCTT 59.177 47.619 1.84 0.00 0.00 2.40
311 316 1.760192 ACCATCTTGCTGCATCTTCC 58.240 50.000 1.84 0.00 0.00 3.46
314 319 0.465097 ATCTTGCTGCATCTTCCGGG 60.465 55.000 1.84 0.00 0.00 5.73
321 326 0.465705 TGCATCTTCCGGGACAGATC 59.534 55.000 14.76 11.61 0.00 2.75
335 340 0.390860 CAGATCCCTCATCGACCACC 59.609 60.000 0.00 0.00 36.50 4.61
340 345 0.253044 CCCTCATCGACCACCACATT 59.747 55.000 0.00 0.00 0.00 2.71
347 352 1.903183 TCGACCACCACATTGTCCATA 59.097 47.619 0.00 0.00 0.00 2.74
350 355 3.681313 CGACCACCACATTGTCCATATCA 60.681 47.826 0.00 0.00 0.00 2.15
359 364 4.909695 ACATTGTCCATATCATCCTCCTGA 59.090 41.667 0.00 0.00 0.00 3.86
365 370 2.803285 TATCATCCTCCTGAAGGCCT 57.197 50.000 0.00 0.00 45.78 5.19
368 373 1.292242 TCATCCTCCTGAAGGCCTAGT 59.708 52.381 5.16 0.00 45.78 2.57
371 376 1.078823 TCCTCCTGAAGGCCTAGTTCA 59.921 52.381 5.16 5.38 45.78 3.18
372 377 1.909302 CCTCCTGAAGGCCTAGTTCAA 59.091 52.381 5.16 0.00 38.67 2.69
386 391 5.938125 GCCTAGTTCAACCATTAGTTTCTCA 59.062 40.000 0.00 0.00 36.18 3.27
391 396 8.697507 AGTTCAACCATTAGTTTCTCAATCTT 57.302 30.769 0.00 0.00 36.18 2.40
403 408 6.713903 AGTTTCTCAATCTTTGATGCAGAAGA 59.286 34.615 11.04 11.04 39.30 2.87
406 411 6.470278 TCTCAATCTTTGATGCAGAAGAAGA 58.530 36.000 12.24 9.58 39.30 2.87
407 412 6.594547 TCTCAATCTTTGATGCAGAAGAAGAG 59.405 38.462 21.43 21.43 39.30 2.85
408 413 5.123502 TCAATCTTTGATGCAGAAGAAGAGC 59.876 40.000 12.24 0.00 35.69 4.09
409 414 3.341823 TCTTTGATGCAGAAGAAGAGCC 58.658 45.455 7.31 0.00 0.00 4.70
410 415 2.119801 TTGATGCAGAAGAAGAGCCC 57.880 50.000 0.00 0.00 0.00 5.19
411 416 0.254178 TGATGCAGAAGAAGAGCCCC 59.746 55.000 0.00 0.00 0.00 5.80
412 417 0.465278 GATGCAGAAGAAGAGCCCCC 60.465 60.000 0.00 0.00 0.00 5.40
413 418 2.124942 GCAGAAGAAGAGCCCCCG 60.125 66.667 0.00 0.00 0.00 5.73
414 419 2.586792 CAGAAGAAGAGCCCCCGG 59.413 66.667 0.00 0.00 0.00 5.73
434 439 4.266070 GTAGCCGATCCGCTCGCA 62.266 66.667 12.00 0.00 46.25 5.10
435 440 3.295273 TAGCCGATCCGCTCGCAT 61.295 61.111 12.00 0.00 46.25 4.73
436 441 3.268965 TAGCCGATCCGCTCGCATC 62.269 63.158 12.00 0.00 46.25 3.91
437 442 4.654412 GCCGATCCGCTCGCATCT 62.654 66.667 0.00 0.00 46.25 2.90
438 443 2.429907 CCGATCCGCTCGCATCTC 60.430 66.667 0.57 0.00 46.25 2.75
439 444 2.429907 CGATCCGCTCGCATCTCC 60.430 66.667 0.00 0.00 41.14 3.71
440 445 2.048690 GATCCGCTCGCATCTCCC 60.049 66.667 0.00 0.00 0.00 4.30
441 446 3.905705 GATCCGCTCGCATCTCCCG 62.906 68.421 0.00 0.00 0.00 5.14
448 453 4.923942 CGCATCTCCCGCAGCCAT 62.924 66.667 0.00 0.00 0.00 4.40
449 454 3.285215 GCATCTCCCGCAGCCATG 61.285 66.667 0.00 0.00 0.00 3.66
450 455 2.507452 CATCTCCCGCAGCCATGA 59.493 61.111 0.00 0.00 0.00 3.07
451 456 1.153107 CATCTCCCGCAGCCATGAA 60.153 57.895 0.00 0.00 0.00 2.57
452 457 1.153086 ATCTCCCGCAGCCATGAAC 60.153 57.895 0.00 0.00 0.00 3.18
453 458 2.930385 ATCTCCCGCAGCCATGAACG 62.930 60.000 0.00 0.00 0.00 3.95
456 461 2.511373 CCGCAGCCATGAACGCTA 60.511 61.111 0.00 0.00 33.91 4.26
457 462 2.106074 CCGCAGCCATGAACGCTAA 61.106 57.895 0.00 0.00 33.91 3.09
458 463 1.643868 CCGCAGCCATGAACGCTAAA 61.644 55.000 0.00 0.00 33.91 1.85
459 464 0.521242 CGCAGCCATGAACGCTAAAC 60.521 55.000 0.00 0.00 33.91 2.01
460 465 0.179163 GCAGCCATGAACGCTAAACC 60.179 55.000 0.00 0.00 33.91 3.27
461 466 1.453155 CAGCCATGAACGCTAAACCT 58.547 50.000 0.00 0.00 33.91 3.50
462 467 2.627945 CAGCCATGAACGCTAAACCTA 58.372 47.619 0.00 0.00 33.91 3.08
463 468 3.006940 CAGCCATGAACGCTAAACCTAA 58.993 45.455 0.00 0.00 33.91 2.69
464 469 3.007635 AGCCATGAACGCTAAACCTAAC 58.992 45.455 0.00 0.00 33.91 2.34
465 470 2.096980 GCCATGAACGCTAAACCTAACC 59.903 50.000 0.00 0.00 0.00 2.85
466 471 2.681344 CCATGAACGCTAAACCTAACCC 59.319 50.000 0.00 0.00 0.00 4.11
467 472 2.083167 TGAACGCTAAACCTAACCCG 57.917 50.000 0.00 0.00 0.00 5.28
468 473 1.617850 TGAACGCTAAACCTAACCCGA 59.382 47.619 0.00 0.00 0.00 5.14
469 474 2.234414 TGAACGCTAAACCTAACCCGAT 59.766 45.455 0.00 0.00 0.00 4.18
470 475 2.591571 ACGCTAAACCTAACCCGATC 57.408 50.000 0.00 0.00 0.00 3.69
471 476 2.105766 ACGCTAAACCTAACCCGATCT 58.894 47.619 0.00 0.00 0.00 2.75
472 477 2.159142 ACGCTAAACCTAACCCGATCTG 60.159 50.000 0.00 0.00 0.00 2.90
473 478 2.100252 CGCTAAACCTAACCCGATCTGA 59.900 50.000 0.00 0.00 0.00 3.27
474 479 3.243771 CGCTAAACCTAACCCGATCTGAT 60.244 47.826 0.00 0.00 0.00 2.90
475 480 4.058817 GCTAAACCTAACCCGATCTGATG 58.941 47.826 0.00 0.00 0.00 3.07
476 481 4.202223 GCTAAACCTAACCCGATCTGATGA 60.202 45.833 0.00 0.00 0.00 2.92
477 482 4.408182 AAACCTAACCCGATCTGATGAG 57.592 45.455 0.00 0.00 0.00 2.90
478 483 3.314307 ACCTAACCCGATCTGATGAGA 57.686 47.619 0.00 0.00 0.00 3.27
479 484 2.959707 ACCTAACCCGATCTGATGAGAC 59.040 50.000 0.00 0.00 0.00 3.36
480 485 2.959030 CCTAACCCGATCTGATGAGACA 59.041 50.000 0.00 0.00 0.00 3.41
481 486 3.384789 CCTAACCCGATCTGATGAGACAA 59.615 47.826 0.00 0.00 0.00 3.18
482 487 3.981071 AACCCGATCTGATGAGACAAA 57.019 42.857 0.00 0.00 0.00 2.83
483 488 3.252974 ACCCGATCTGATGAGACAAAC 57.747 47.619 0.00 0.00 0.00 2.93
484 489 2.196749 CCCGATCTGATGAGACAAACG 58.803 52.381 0.00 0.00 0.00 3.60
485 490 2.196749 CCGATCTGATGAGACAAACGG 58.803 52.381 0.00 0.00 32.15 4.44
486 491 2.196749 CGATCTGATGAGACAAACGGG 58.803 52.381 0.00 0.00 0.00 5.28
487 492 2.417379 CGATCTGATGAGACAAACGGGT 60.417 50.000 0.00 0.00 0.00 5.28
488 493 2.743636 TCTGATGAGACAAACGGGTC 57.256 50.000 0.00 0.00 38.08 4.46
489 494 1.275291 TCTGATGAGACAAACGGGTCC 59.725 52.381 1.22 0.00 38.59 4.46
490 495 1.276421 CTGATGAGACAAACGGGTCCT 59.724 52.381 1.22 0.00 38.59 3.85
491 496 1.697432 TGATGAGACAAACGGGTCCTT 59.303 47.619 1.22 0.00 38.59 3.36
492 497 2.289444 TGATGAGACAAACGGGTCCTTC 60.289 50.000 1.22 2.82 38.59 3.46
493 498 0.032952 TGAGACAAACGGGTCCTTCG 59.967 55.000 1.22 0.00 38.59 3.79
494 499 0.033090 GAGACAAACGGGTCCTTCGT 59.967 55.000 1.22 0.00 43.14 3.85
495 500 0.249741 AGACAAACGGGTCCTTCGTG 60.250 55.000 0.00 0.00 40.96 4.35
496 501 0.249573 GACAAACGGGTCCTTCGTGA 60.250 55.000 0.00 0.00 40.96 4.35
497 502 0.531311 ACAAACGGGTCCTTCGTGAC 60.531 55.000 0.00 0.00 40.96 3.67
498 503 1.300388 AAACGGGTCCTTCGTGACG 60.300 57.895 0.00 0.00 40.96 4.35
499 504 2.704342 AAACGGGTCCTTCGTGACGG 62.704 60.000 4.70 0.00 40.96 4.79
500 505 3.367743 CGGGTCCTTCGTGACGGA 61.368 66.667 4.70 0.00 36.07 4.69
501 506 2.922950 CGGGTCCTTCGTGACGGAA 61.923 63.158 4.70 0.00 36.07 4.30
502 507 1.373873 GGGTCCTTCGTGACGGAAC 60.374 63.158 4.70 1.95 36.26 3.62
503 508 1.373873 GGTCCTTCGTGACGGAACC 60.374 63.158 4.70 0.00 36.07 3.62
504 509 1.664306 GTCCTTCGTGACGGAACCT 59.336 57.895 4.70 0.00 0.00 3.50
505 510 0.883833 GTCCTTCGTGACGGAACCTA 59.116 55.000 4.70 0.00 0.00 3.08
506 511 1.270550 GTCCTTCGTGACGGAACCTAA 59.729 52.381 4.70 0.00 0.00 2.69
507 512 1.270550 TCCTTCGTGACGGAACCTAAC 59.729 52.381 4.70 0.00 0.00 2.34
508 513 1.670967 CCTTCGTGACGGAACCTAACC 60.671 57.143 4.70 0.00 0.00 2.85
509 514 0.318120 TTCGTGACGGAACCTAACCC 59.682 55.000 4.70 0.00 0.00 4.11
510 515 0.827089 TCGTGACGGAACCTAACCCA 60.827 55.000 4.70 0.00 0.00 4.51
511 516 0.033781 CGTGACGGAACCTAACCCAA 59.966 55.000 0.00 0.00 0.00 4.12
512 517 1.804601 GTGACGGAACCTAACCCAAG 58.195 55.000 0.00 0.00 0.00 3.61
513 518 0.035739 TGACGGAACCTAACCCAAGC 59.964 55.000 0.00 0.00 0.00 4.01
514 519 0.675837 GACGGAACCTAACCCAAGCC 60.676 60.000 0.00 0.00 0.00 4.35
515 520 1.743995 CGGAACCTAACCCAAGCCG 60.744 63.158 0.00 0.00 0.00 5.52
516 521 2.044555 GGAACCTAACCCAAGCCGC 61.045 63.158 0.00 0.00 0.00 6.53
517 522 2.035155 AACCTAACCCAAGCCGCC 59.965 61.111 0.00 0.00 0.00 6.13
518 523 2.479820 GAACCTAACCCAAGCCGCCT 62.480 60.000 0.00 0.00 0.00 5.52
519 524 2.438434 CCTAACCCAAGCCGCCTG 60.438 66.667 0.00 0.00 0.00 4.85
520 525 3.134127 CTAACCCAAGCCGCCTGC 61.134 66.667 0.00 0.00 41.71 4.85
536 541 3.702478 TGCGAACAGAGATCGTCAG 57.298 52.632 0.00 0.00 42.15 3.51
537 542 0.171231 TGCGAACAGAGATCGTCAGG 59.829 55.000 0.00 0.00 42.15 3.86
538 543 0.526524 GCGAACAGAGATCGTCAGGG 60.527 60.000 0.00 0.00 42.15 4.45
539 544 0.526524 CGAACAGAGATCGTCAGGGC 60.527 60.000 0.00 0.00 35.64 5.19
540 545 0.532573 GAACAGAGATCGTCAGGGCA 59.467 55.000 0.00 0.00 0.00 5.36
541 546 0.534412 AACAGAGATCGTCAGGGCAG 59.466 55.000 0.00 0.00 0.00 4.85
542 547 1.326213 ACAGAGATCGTCAGGGCAGG 61.326 60.000 0.00 0.00 0.00 4.85
543 548 1.039785 CAGAGATCGTCAGGGCAGGA 61.040 60.000 0.00 0.00 0.00 3.86
544 549 0.324738 AGAGATCGTCAGGGCAGGAA 60.325 55.000 0.00 0.00 0.00 3.36
545 550 0.103937 GAGATCGTCAGGGCAGGAAG 59.896 60.000 0.00 0.00 0.00 3.46
546 551 1.522580 GATCGTCAGGGCAGGAAGC 60.523 63.158 0.00 0.00 44.65 3.86
557 562 4.798682 AGGAAGCCCCGGTCGGAT 62.799 66.667 11.39 0.00 40.87 4.18
558 563 4.237207 GGAAGCCCCGGTCGGATC 62.237 72.222 11.39 2.11 37.50 3.36
559 564 4.237207 GAAGCCCCGGTCGGATCC 62.237 72.222 11.39 0.00 37.50 3.36
585 590 2.349755 CCGGCGGGAAGGAAGAAA 59.650 61.111 20.56 0.00 34.06 2.52
586 591 1.302993 CCGGCGGGAAGGAAGAAAA 60.303 57.895 20.56 0.00 34.06 2.29
587 592 1.583495 CCGGCGGGAAGGAAGAAAAC 61.583 60.000 20.56 0.00 34.06 2.43
588 593 1.583495 CGGCGGGAAGGAAGAAAACC 61.583 60.000 0.00 0.00 0.00 3.27
589 594 1.583495 GGCGGGAAGGAAGAAAACCG 61.583 60.000 0.00 0.00 43.81 4.44
590 595 0.887836 GCGGGAAGGAAGAAAACCGT 60.888 55.000 0.00 0.00 42.98 4.83
591 596 0.872388 CGGGAAGGAAGAAAACCGTG 59.128 55.000 0.00 0.00 36.78 4.94
592 597 1.244816 GGGAAGGAAGAAAACCGTGG 58.755 55.000 0.00 0.00 0.00 4.94
593 598 1.202842 GGGAAGGAAGAAAACCGTGGA 60.203 52.381 0.00 0.00 0.00 4.02
594 599 2.554564 GGGAAGGAAGAAAACCGTGGAT 60.555 50.000 0.00 0.00 0.00 3.41
595 600 2.747989 GGAAGGAAGAAAACCGTGGATC 59.252 50.000 0.00 0.00 0.00 3.36
596 601 3.559384 GGAAGGAAGAAAACCGTGGATCT 60.559 47.826 0.00 0.00 0.00 2.75
597 602 3.336138 AGGAAGAAAACCGTGGATCTC 57.664 47.619 0.00 0.00 0.00 2.75
598 603 2.637872 AGGAAGAAAACCGTGGATCTCA 59.362 45.455 0.00 0.00 0.00 3.27
599 604 3.072476 AGGAAGAAAACCGTGGATCTCAA 59.928 43.478 0.00 0.00 0.00 3.02
600 605 3.188667 GGAAGAAAACCGTGGATCTCAAC 59.811 47.826 0.00 0.00 0.00 3.18
601 606 2.413837 AGAAAACCGTGGATCTCAACG 58.586 47.619 0.00 0.00 0.00 4.10
604 609 2.885644 CCGTGGATCTCAACGGCG 60.886 66.667 12.93 4.80 38.95 6.46
605 610 2.885644 CGTGGATCTCAACGGCGG 60.886 66.667 13.24 0.00 0.00 6.13
606 611 3.195698 GTGGATCTCAACGGCGGC 61.196 66.667 13.24 0.00 0.00 6.53
607 612 4.812476 TGGATCTCAACGGCGGCG 62.812 66.667 31.06 31.06 0.00 6.46
608 613 4.508128 GGATCTCAACGGCGGCGA 62.508 66.667 38.93 16.07 0.00 5.54
609 614 2.956964 GATCTCAACGGCGGCGAG 60.957 66.667 38.93 27.56 0.00 5.03
610 615 3.411418 GATCTCAACGGCGGCGAGA 62.411 63.158 38.93 28.80 39.95 4.04
611 616 2.884087 GATCTCAACGGCGGCGAGAA 62.884 60.000 38.93 21.98 39.15 2.87
612 617 2.890847 ATCTCAACGGCGGCGAGAAG 62.891 60.000 38.93 27.30 39.15 2.85
613 618 3.916392 CTCAACGGCGGCGAGAAGT 62.916 63.158 38.93 12.71 0.00 3.01
614 619 3.479269 CAACGGCGGCGAGAAGTC 61.479 66.667 38.93 0.00 0.00 3.01
623 628 2.405594 CGAGAAGTCGCCTCCGAG 59.594 66.667 0.00 0.00 45.38 4.63
624 629 2.107292 CGAGAAGTCGCCTCCGAGA 61.107 63.158 0.00 0.00 45.38 4.04
625 630 1.725066 GAGAAGTCGCCTCCGAGAG 59.275 63.158 0.00 0.00 45.38 3.20
640 645 3.786516 CGAGAGGAAGAGAAACCCTAC 57.213 52.381 0.00 0.00 0.00 3.18
641 646 2.427812 CGAGAGGAAGAGAAACCCTACC 59.572 54.545 0.00 0.00 0.00 3.18
642 647 3.715287 GAGAGGAAGAGAAACCCTACCT 58.285 50.000 0.00 0.00 0.00 3.08
643 648 4.098155 GAGAGGAAGAGAAACCCTACCTT 58.902 47.826 0.00 0.00 0.00 3.50
644 649 3.841255 AGAGGAAGAGAAACCCTACCTTG 59.159 47.826 0.00 0.00 0.00 3.61
645 650 3.838903 GAGGAAGAGAAACCCTACCTTGA 59.161 47.826 0.00 0.00 0.00 3.02
646 651 3.841255 AGGAAGAGAAACCCTACCTTGAG 59.159 47.826 0.00 0.00 0.00 3.02
647 652 3.055021 GGAAGAGAAACCCTACCTTGAGG 60.055 52.174 0.00 0.00 42.17 3.86
658 663 1.574263 ACCTTGAGGGAGAAGTAGCC 58.426 55.000 1.54 0.00 40.27 3.93
659 664 0.461961 CCTTGAGGGAGAAGTAGCCG 59.538 60.000 0.00 0.00 37.23 5.52
660 665 1.187087 CTTGAGGGAGAAGTAGCCGT 58.813 55.000 0.00 0.00 0.00 5.68
661 666 0.895530 TTGAGGGAGAAGTAGCCGTG 59.104 55.000 0.00 0.00 0.00 4.94
662 667 0.251653 TGAGGGAGAAGTAGCCGTGT 60.252 55.000 0.00 0.00 0.00 4.49
663 668 1.005097 TGAGGGAGAAGTAGCCGTGTA 59.995 52.381 0.00 0.00 0.00 2.90
664 669 2.308690 GAGGGAGAAGTAGCCGTGTAT 58.691 52.381 0.00 0.00 0.00 2.29
665 670 3.117776 TGAGGGAGAAGTAGCCGTGTATA 60.118 47.826 0.00 0.00 0.00 1.47
666 671 3.488363 AGGGAGAAGTAGCCGTGTATAG 58.512 50.000 0.00 0.00 0.00 1.31
667 672 2.557490 GGGAGAAGTAGCCGTGTATAGG 59.443 54.545 0.00 0.00 0.00 2.57
668 673 3.484407 GGAGAAGTAGCCGTGTATAGGA 58.516 50.000 0.00 0.00 0.00 2.94
669 674 3.502979 GGAGAAGTAGCCGTGTATAGGAG 59.497 52.174 0.00 0.00 0.00 3.69
670 675 4.136051 GAGAAGTAGCCGTGTATAGGAGT 58.864 47.826 0.00 0.00 0.00 3.85
671 676 5.301835 AGAAGTAGCCGTGTATAGGAGTA 57.698 43.478 0.00 0.00 0.00 2.59
672 677 5.062528 AGAAGTAGCCGTGTATAGGAGTAC 58.937 45.833 0.00 0.00 0.00 2.73
673 678 4.703379 AGTAGCCGTGTATAGGAGTACT 57.297 45.455 0.00 0.00 0.00 2.73
674 679 5.815233 AGTAGCCGTGTATAGGAGTACTA 57.185 43.478 0.00 0.00 31.99 1.82
675 680 5.792741 AGTAGCCGTGTATAGGAGTACTAG 58.207 45.833 0.00 0.00 34.56 2.57
676 681 3.410508 AGCCGTGTATAGGAGTACTAGC 58.589 50.000 0.00 0.00 34.56 3.42
677 682 3.144506 GCCGTGTATAGGAGTACTAGCA 58.855 50.000 0.00 0.00 34.56 3.49
678 683 3.567164 GCCGTGTATAGGAGTACTAGCAA 59.433 47.826 0.00 0.00 34.56 3.91
679 684 4.556302 GCCGTGTATAGGAGTACTAGCAAC 60.556 50.000 0.00 0.00 34.56 4.17
680 685 4.577693 CCGTGTATAGGAGTACTAGCAACA 59.422 45.833 0.00 0.00 34.56 3.33
681 686 5.505324 CCGTGTATAGGAGTACTAGCAACAC 60.505 48.000 12.39 12.39 38.77 3.32
682 687 5.296283 CGTGTATAGGAGTACTAGCAACACT 59.704 44.000 17.12 0.00 39.33 3.55
683 688 6.183360 CGTGTATAGGAGTACTAGCAACACTT 60.183 42.308 17.12 0.00 39.33 3.16
684 689 7.545489 GTGTATAGGAGTACTAGCAACACTTT 58.455 38.462 14.12 0.00 38.91 2.66
685 690 8.680903 GTGTATAGGAGTACTAGCAACACTTTA 58.319 37.037 14.12 0.00 38.91 1.85
686 691 8.900781 TGTATAGGAGTACTAGCAACACTTTAG 58.099 37.037 0.00 0.00 34.56 1.85
687 692 5.074584 AGGAGTACTAGCAACACTTTAGC 57.925 43.478 0.00 0.00 0.00 3.09
688 693 4.527038 AGGAGTACTAGCAACACTTTAGCA 59.473 41.667 0.00 0.00 0.00 3.49
689 694 5.187967 AGGAGTACTAGCAACACTTTAGCAT 59.812 40.000 0.00 0.00 0.00 3.79
690 695 5.292101 GGAGTACTAGCAACACTTTAGCATG 59.708 44.000 0.00 0.00 0.00 4.06
691 696 5.794894 AGTACTAGCAACACTTTAGCATGT 58.205 37.500 0.00 0.00 0.00 3.21
692 697 6.231211 AGTACTAGCAACACTTTAGCATGTT 58.769 36.000 0.00 0.00 39.63 2.71
693 698 7.383687 AGTACTAGCAACACTTTAGCATGTTA 58.616 34.615 0.00 0.00 36.92 2.41
694 699 6.727824 ACTAGCAACACTTTAGCATGTTAG 57.272 37.500 0.00 0.00 36.92 2.34
695 700 6.231211 ACTAGCAACACTTTAGCATGTTAGT 58.769 36.000 0.00 0.00 36.92 2.24
696 701 6.710744 ACTAGCAACACTTTAGCATGTTAGTT 59.289 34.615 0.00 0.00 35.42 2.24
697 702 7.876068 ACTAGCAACACTTTAGCATGTTAGTTA 59.124 33.333 0.00 0.00 35.42 2.24
698 703 7.687941 AGCAACACTTTAGCATGTTAGTTAT 57.312 32.000 0.00 0.00 36.92 1.89
699 704 8.110860 AGCAACACTTTAGCATGTTAGTTATT 57.889 30.769 0.00 0.00 36.92 1.40
700 705 8.576442 AGCAACACTTTAGCATGTTAGTTATTT 58.424 29.630 0.00 0.00 36.92 1.40
701 706 8.850452 GCAACACTTTAGCATGTTAGTTATTTC 58.150 33.333 0.00 0.00 36.92 2.17
705 710 9.774742 CACTTTAGCATGTTAGTTATTTCTTCC 57.225 33.333 0.00 0.00 0.00 3.46
706 711 8.957466 ACTTTAGCATGTTAGTTATTTCTTCCC 58.043 33.333 0.00 0.00 0.00 3.97
707 712 7.875327 TTAGCATGTTAGTTATTTCTTCCCC 57.125 36.000 0.00 0.00 0.00 4.81
708 713 4.881850 AGCATGTTAGTTATTTCTTCCCCG 59.118 41.667 0.00 0.00 0.00 5.73
709 714 4.036380 GCATGTTAGTTATTTCTTCCCCGG 59.964 45.833 0.00 0.00 0.00 5.73
710 715 4.224991 TGTTAGTTATTTCTTCCCCGGG 57.775 45.455 15.80 15.80 0.00 5.73
711 716 2.947652 GTTAGTTATTTCTTCCCCGGGC 59.052 50.000 17.73 0.00 0.00 6.13
712 717 0.257905 AGTTATTTCTTCCCCGGGCC 59.742 55.000 17.73 0.00 0.00 5.80
713 718 0.754217 GTTATTTCTTCCCCGGGCCC 60.754 60.000 17.73 13.57 0.00 5.80
714 719 1.940242 TTATTTCTTCCCCGGGCCCC 61.940 60.000 17.73 0.00 0.00 5.80
715 720 2.868790 TATTTCTTCCCCGGGCCCCT 62.869 60.000 17.73 0.00 0.00 4.79
716 721 2.868790 ATTTCTTCCCCGGGCCCCTA 62.869 60.000 17.73 0.00 0.00 3.53
717 722 3.582833 TTCTTCCCCGGGCCCCTAA 62.583 63.158 17.73 4.29 0.00 2.69
718 723 3.018805 CTTCCCCGGGCCCCTAAA 61.019 66.667 17.73 4.70 0.00 1.85
719 724 2.534794 TTCCCCGGGCCCCTAAAA 60.535 61.111 17.73 2.84 0.00 1.52
720 725 2.157798 CTTCCCCGGGCCCCTAAAAA 62.158 60.000 17.73 3.53 0.00 1.94
956 975 2.597217 CCACCACACGGCCACAAT 60.597 61.111 2.24 0.00 34.57 2.71
1209 1364 1.333636 CCGTGGAGATGGAGAAGGCT 61.334 60.000 0.00 0.00 0.00 4.58
1386 1541 3.461773 GAGGAGGTGCGGCAGCTA 61.462 66.667 32.00 0.00 42.53 3.32
1419 1574 2.439156 GCCATTCTCAAGGCGGCT 60.439 61.111 5.25 5.25 41.70 5.52
1470 1625 1.699730 TGAAGAAGGAGACGACCACA 58.300 50.000 0.00 0.00 0.00 4.17
1814 1970 5.479306 TGATCCTTTTGTACACTACTCTGC 58.521 41.667 0.00 0.00 0.00 4.26
1853 2016 7.125053 TGGTCCTTTAATCCCCAATTCATTTAC 59.875 37.037 0.00 0.00 0.00 2.01
1854 2017 7.344612 GGTCCTTTAATCCCCAATTCATTTACT 59.655 37.037 0.00 0.00 0.00 2.24
1855 2018 8.758829 GTCCTTTAATCCCCAATTCATTTACTT 58.241 33.333 0.00 0.00 0.00 2.24
1885 2048 9.850628 GGAGAACCCAAATATAGTGTTAAAAAC 57.149 33.333 0.00 0.00 34.14 2.43
1886 2049 9.550811 GAGAACCCAAATATAGTGTTAAAAACG 57.449 33.333 0.00 0.00 0.00 3.60
1887 2050 8.024865 AGAACCCAAATATAGTGTTAAAAACGC 58.975 33.333 0.00 0.00 42.10 4.84
1906 2069 8.937634 AAAACGCTATTATATTATAGGACGGG 57.062 34.615 10.04 0.00 0.00 5.28
1907 2070 6.645790 ACGCTATTATATTATAGGACGGGG 57.354 41.667 10.04 0.00 0.00 5.73
1908 2071 5.537674 ACGCTATTATATTATAGGACGGGGG 59.462 44.000 10.04 0.00 0.00 5.40
1909 2072 5.771666 CGCTATTATATTATAGGACGGGGGA 59.228 44.000 10.04 0.00 0.00 4.81
1910 2073 6.266103 CGCTATTATATTATAGGACGGGGGAA 59.734 42.308 10.04 0.00 0.00 3.97
1923 2086 4.651045 GGACGGGGGAATACTAAAGTAGAA 59.349 45.833 0.00 0.00 33.52 2.10
1929 2092 6.329460 GGGGGAATACTAAAGTAGAATGTCCT 59.671 42.308 0.00 0.00 33.52 3.85
1941 2104 8.918202 AAGTAGAATGTCCTTTGTTTATGACA 57.082 30.769 0.00 0.00 41.52 3.58
1943 2106 8.950210 AGTAGAATGTCCTTTGTTTATGACATG 58.050 33.333 4.90 0.00 45.14 3.21
1944 2107 7.765695 AGAATGTCCTTTGTTTATGACATGT 57.234 32.000 0.00 0.00 45.14 3.21
1945 2108 8.181904 AGAATGTCCTTTGTTTATGACATGTT 57.818 30.769 0.00 0.00 45.14 2.71
1946 2109 8.084073 AGAATGTCCTTTGTTTATGACATGTTG 58.916 33.333 0.00 0.00 45.14 3.33
1947 2110 6.707440 TGTCCTTTGTTTATGACATGTTGT 57.293 33.333 0.00 0.00 38.26 3.32
1948 2111 7.106439 TGTCCTTTGTTTATGACATGTTGTT 57.894 32.000 0.00 0.00 38.26 2.83
2004 2167 5.925509 TCATTAGGCTAACATTAGACCACC 58.074 41.667 9.55 0.00 39.71 4.61
2008 2171 4.359105 AGGCTAACATTAGACCACCTACA 58.641 43.478 0.64 0.00 39.71 2.74
2025 2188 6.536582 CCACCTACAACATGATTAACAGAGAG 59.463 42.308 0.00 0.00 0.00 3.20
2068 2231 1.355720 AGTAAAGTCCCATGCCTGCTT 59.644 47.619 0.00 0.00 0.00 3.91
2069 2232 1.474077 GTAAAGTCCCATGCCTGCTTG 59.526 52.381 0.00 0.00 0.00 4.01
2070 2233 0.112995 AAAGTCCCATGCCTGCTTGA 59.887 50.000 6.59 0.00 0.00 3.02
2071 2234 0.333993 AAGTCCCATGCCTGCTTGAT 59.666 50.000 6.59 0.00 0.00 2.57
2072 2235 0.395311 AGTCCCATGCCTGCTTGATG 60.395 55.000 6.59 0.00 0.00 3.07
2073 2236 1.755395 TCCCATGCCTGCTTGATGC 60.755 57.895 6.59 0.00 43.25 3.91
2151 2481 3.456105 GATCGGGCGTTAGGGGTGG 62.456 68.421 0.00 0.00 0.00 4.61
2176 2506 4.039245 ACCTCCATTATCGTGTGGATAGTG 59.961 45.833 0.00 0.76 43.20 2.74
2183 2513 3.587797 TCGTGTGGATAGTGAGTTTCC 57.412 47.619 0.00 0.00 0.00 3.13
2194 2524 3.600898 GAGTTTCCGACGGTGGGGG 62.601 68.421 14.79 0.00 0.00 5.40
2210 2540 4.090819 GTGGGGGCACTTTTCCTTTTATA 58.909 43.478 0.00 0.00 0.00 0.98
2218 2548 7.362660 GGGCACTTTTCCTTTTATACTAGGTTG 60.363 40.741 0.00 0.00 33.15 3.77
2266 2596 3.692690 GTTGGTTCAGTGCCCCTTATTA 58.307 45.455 0.00 0.00 0.00 0.98
2269 2599 2.508300 GGTTCAGTGCCCCTTATTAGGA 59.492 50.000 0.00 0.00 45.05 2.94
2278 2608 3.322828 GCCCCTTATTAGGACACATACGA 59.677 47.826 0.00 0.00 45.05 3.43
2279 2609 4.020485 GCCCCTTATTAGGACACATACGAT 60.020 45.833 0.00 0.00 45.05 3.73
2280 2610 5.721232 CCCCTTATTAGGACACATACGATC 58.279 45.833 0.00 0.00 45.05 3.69
2281 2611 5.399858 CCCTTATTAGGACACATACGATCG 58.600 45.833 14.88 14.88 45.05 3.69
2289 2619 3.119919 GGACACATACGATCGGAGGTATC 60.120 52.174 18.50 16.54 0.00 2.24
2332 2663 9.612620 GGTTGTTACAACTAAGATCAATTTCAG 57.387 33.333 24.67 0.00 0.00 3.02
2438 2769 5.620206 TGGTCAATGAAATGTCACTGTACT 58.380 37.500 0.00 0.00 36.31 2.73
2514 2846 7.246027 AGGAGTTGGTTTATTTAATGGTCCTT 58.754 34.615 0.00 0.00 0.00 3.36
2530 2862 1.003118 TCCTTGTTTCCAGGATCCACG 59.997 52.381 15.82 4.18 0.00 4.94
2531 2863 1.453155 CTTGTTTCCAGGATCCACGG 58.547 55.000 15.82 14.20 0.00 4.94
2555 2887 0.974010 TCCTAACCCACGCGAGGAAT 60.974 55.000 24.92 14.08 35.12 3.01
2569 2901 4.623167 CGCGAGGAATCTTATCATACAAGG 59.377 45.833 0.00 0.00 0.00 3.61
2592 2924 6.012771 AGGGTAAATTGTCAGCCTTAGTAAGT 60.013 38.462 9.05 0.00 39.63 2.24
2599 2931 3.007614 GTCAGCCTTAGTAAGTGGAACCA 59.992 47.826 9.05 0.00 37.80 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.893544 TCTATGACGTCCCGGATCTC 58.106 55.000 14.12 0.00 0.00 2.75
12 13 6.977502 CGGACATATGGATTCAGATCTATGAC 59.022 42.308 7.80 0.00 34.72 3.06
17 18 4.020751 CACCGGACATATGGATTCAGATCT 60.021 45.833 9.46 0.00 32.66 2.75
37 41 2.292267 CCATGTCAAGCTGGATACACC 58.708 52.381 0.00 0.00 46.17 4.16
47 51 0.605319 TCAACCGTCCCATGTCAAGC 60.605 55.000 0.00 0.00 0.00 4.01
54 58 1.553704 GGAGTAACTCAACCGTCCCAT 59.446 52.381 0.00 0.00 31.08 4.00
57 61 2.734492 CGATGGAGTAACTCAACCGTCC 60.734 54.545 0.00 0.00 35.69 4.79
63 67 3.449737 CCCCTTACGATGGAGTAACTCAA 59.550 47.826 0.00 0.00 33.53 3.02
66 70 1.761198 GCCCCTTACGATGGAGTAACT 59.239 52.381 0.00 0.00 33.53 2.24
68 72 1.868713 TGCCCCTTACGATGGAGTAA 58.131 50.000 0.00 0.00 35.54 2.24
69 73 1.868713 TTGCCCCTTACGATGGAGTA 58.131 50.000 0.00 0.00 0.00 2.59
78 82 2.290641 CGCTGTTATCATTGCCCCTTAC 59.709 50.000 0.00 0.00 0.00 2.34
80 84 1.340991 ACGCTGTTATCATTGCCCCTT 60.341 47.619 0.00 0.00 0.00 3.95
86 90 3.416277 CGTGGAAACGCTGTTATCATTG 58.584 45.455 0.00 0.00 39.21 2.82
87 91 2.418628 CCGTGGAAACGCTGTTATCATT 59.581 45.455 0.00 0.00 39.21 2.57
93 97 1.314730 ATTTCCGTGGAAACGCTGTT 58.685 45.000 15.89 0.00 45.34 3.16
96 100 0.879090 GGAATTTCCGTGGAAACGCT 59.121 50.000 15.89 4.45 45.34 5.07
105 109 1.381191 GGGGCCATGGAATTTCCGT 60.381 57.895 18.40 7.65 40.17 4.69
107 111 0.262876 AGAGGGGCCATGGAATTTCC 59.737 55.000 18.40 8.59 36.96 3.13
108 112 1.758862 CAAGAGGGGCCATGGAATTTC 59.241 52.381 18.40 7.28 0.00 2.17
111 115 1.075748 GCAAGAGGGGCCATGGAAT 60.076 57.895 18.40 0.00 0.00 3.01
120 124 2.103941 GGAGAGAGTAATGCAAGAGGGG 59.896 54.545 0.00 0.00 0.00 4.79
146 150 2.203877 AGTTCCGGTGCCTGGGTA 60.204 61.111 0.00 0.00 0.00 3.69
147 151 3.953775 CAGTTCCGGTGCCTGGGT 61.954 66.667 0.00 0.00 0.00 4.51
151 155 1.898574 CTTTGCAGTTCCGGTGCCT 60.899 57.895 12.53 0.00 40.43 4.75
155 159 2.561478 ATACACTTTGCAGTTCCGGT 57.439 45.000 0.00 0.00 0.00 5.28
156 160 6.861065 AATATATACACTTTGCAGTTCCGG 57.139 37.500 0.00 0.00 0.00 5.14
162 166 8.437360 TGGAGTCAAATATATACACTTTGCAG 57.563 34.615 0.00 0.00 31.50 4.41
167 171 6.183360 ACCGCTGGAGTCAAATATATACACTT 60.183 38.462 1.50 0.00 0.00 3.16
168 172 5.304614 ACCGCTGGAGTCAAATATATACACT 59.695 40.000 1.50 0.00 0.00 3.55
174 178 7.107542 AGTTTAAACCGCTGGAGTCAAATATA 58.892 34.615 14.72 0.00 0.00 0.86
176 180 5.310451 AGTTTAAACCGCTGGAGTCAAATA 58.690 37.500 14.72 0.00 0.00 1.40
177 181 4.142038 AGTTTAAACCGCTGGAGTCAAAT 58.858 39.130 14.72 0.00 0.00 2.32
182 186 2.876550 GTCAAGTTTAAACCGCTGGAGT 59.123 45.455 14.72 0.00 0.00 3.85
189 193 5.049405 AGCTCAAGATGTCAAGTTTAAACCG 60.049 40.000 14.72 6.86 0.00 4.44
192 196 9.155975 GATCTAGCTCAAGATGTCAAGTTTAAA 57.844 33.333 3.66 0.00 36.33 1.52
195 199 6.112058 GGATCTAGCTCAAGATGTCAAGTTT 58.888 40.000 3.66 0.00 36.33 2.66
207 211 0.461548 CTGCGTGGGATCTAGCTCAA 59.538 55.000 0.00 0.00 0.00 3.02
228 232 1.269517 TGGTTTTTCCGCAACATGAGC 60.270 47.619 0.00 1.80 39.52 4.26
237 241 2.650778 CAGGGCTGGTTTTTCCGC 59.349 61.111 0.00 0.00 39.52 5.54
263 267 5.726729 TTGCTCGCGTTCATATTGATAAA 57.273 34.783 5.77 0.00 0.00 1.40
269 274 2.541588 GGCAATTGCTCGCGTTCATATT 60.542 45.455 28.42 5.68 41.70 1.28
272 277 1.137404 GGCAATTGCTCGCGTTCAT 59.863 52.632 28.42 0.00 41.70 2.57
275 280 1.371635 GTTGGCAATTGCTCGCGTT 60.372 52.632 28.42 0.00 41.70 4.84
278 283 0.803380 GATGGTTGGCAATTGCTCGC 60.803 55.000 28.42 17.64 41.70 5.03
281 286 1.338389 GCAAGATGGTTGGCAATTGCT 60.338 47.619 28.42 8.90 39.82 3.91
284 289 1.338389 GCAGCAAGATGGTTGGCAATT 60.338 47.619 1.92 0.00 0.00 2.32
289 294 1.471119 AGATGCAGCAAGATGGTTGG 58.529 50.000 4.07 0.00 0.00 3.77
314 319 1.067821 GTGGTCGATGAGGGATCTGTC 59.932 57.143 0.00 0.00 0.00 3.51
321 326 0.253044 AATGTGGTGGTCGATGAGGG 59.747 55.000 0.00 0.00 0.00 4.30
335 340 5.001874 CAGGAGGATGATATGGACAATGTG 58.998 45.833 0.00 0.00 0.00 3.21
359 364 4.929146 ACTAATGGTTGAACTAGGCCTT 57.071 40.909 12.58 0.00 0.00 4.35
365 370 9.793259 AAGATTGAGAAACTAATGGTTGAACTA 57.207 29.630 0.00 0.00 38.29 2.24
368 373 9.130661 TCAAAGATTGAGAAACTAATGGTTGAA 57.869 29.630 0.00 0.00 34.86 2.69
371 376 8.031277 GCATCAAAGATTGAGAAACTAATGGTT 58.969 33.333 0.00 0.00 43.98 3.67
372 377 7.177216 TGCATCAAAGATTGAGAAACTAATGGT 59.823 33.333 0.00 0.00 43.98 3.55
386 391 4.398673 GGCTCTTCTTCTGCATCAAAGATT 59.601 41.667 7.04 0.00 31.89 2.40
391 396 1.340405 GGGGCTCTTCTTCTGCATCAA 60.340 52.381 0.00 0.00 0.00 2.57
423 428 2.048690 GGGAGATGCGAGCGGATC 60.049 66.667 15.20 15.20 42.22 3.36
424 429 3.983494 CGGGAGATGCGAGCGGAT 61.983 66.667 0.00 0.00 0.00 4.18
431 436 4.923942 ATGGCTGCGGGAGATGCG 62.924 66.667 0.00 0.00 34.24 4.73
432 437 3.285215 CATGGCTGCGGGAGATGC 61.285 66.667 0.00 0.00 0.00 3.91
433 438 1.153107 TTCATGGCTGCGGGAGATG 60.153 57.895 0.00 0.00 0.00 2.90
434 439 1.153086 GTTCATGGCTGCGGGAGAT 60.153 57.895 0.00 0.00 0.00 2.75
435 440 2.268920 GTTCATGGCTGCGGGAGA 59.731 61.111 0.00 0.00 0.00 3.71
436 441 3.197790 CGTTCATGGCTGCGGGAG 61.198 66.667 0.00 0.00 0.00 4.30
439 444 1.643868 TTTAGCGTTCATGGCTGCGG 61.644 55.000 5.32 0.00 41.69 5.69
440 445 0.521242 GTTTAGCGTTCATGGCTGCG 60.521 55.000 5.32 0.91 41.69 5.18
441 446 0.179163 GGTTTAGCGTTCATGGCTGC 60.179 55.000 5.32 0.00 41.69 5.25
442 447 1.453155 AGGTTTAGCGTTCATGGCTG 58.547 50.000 5.32 0.00 41.69 4.85
443 448 3.007635 GTTAGGTTTAGCGTTCATGGCT 58.992 45.455 0.56 0.56 44.35 4.75
444 449 2.096980 GGTTAGGTTTAGCGTTCATGGC 59.903 50.000 0.00 0.00 0.00 4.40
445 450 2.681344 GGGTTAGGTTTAGCGTTCATGG 59.319 50.000 0.00 0.00 0.00 3.66
446 451 2.350498 CGGGTTAGGTTTAGCGTTCATG 59.650 50.000 0.00 0.00 0.00 3.07
447 452 2.234414 TCGGGTTAGGTTTAGCGTTCAT 59.766 45.455 0.00 0.00 0.00 2.57
448 453 1.617850 TCGGGTTAGGTTTAGCGTTCA 59.382 47.619 0.00 0.00 0.00 3.18
449 454 2.368655 TCGGGTTAGGTTTAGCGTTC 57.631 50.000 0.00 0.00 0.00 3.95
450 455 2.498885 AGATCGGGTTAGGTTTAGCGTT 59.501 45.455 0.00 0.00 0.00 4.84
451 456 2.105766 AGATCGGGTTAGGTTTAGCGT 58.894 47.619 0.00 0.00 0.00 5.07
452 457 2.100252 TCAGATCGGGTTAGGTTTAGCG 59.900 50.000 0.00 0.00 0.00 4.26
453 458 3.814005 TCAGATCGGGTTAGGTTTAGC 57.186 47.619 0.00 0.00 0.00 3.09
454 459 5.302059 TCTCATCAGATCGGGTTAGGTTTAG 59.698 44.000 0.00 0.00 0.00 1.85
455 460 5.068723 GTCTCATCAGATCGGGTTAGGTTTA 59.931 44.000 0.00 0.00 0.00 2.01
456 461 4.030913 TCTCATCAGATCGGGTTAGGTTT 58.969 43.478 0.00 0.00 0.00 3.27
457 462 3.385111 GTCTCATCAGATCGGGTTAGGTT 59.615 47.826 0.00 0.00 0.00 3.50
458 463 2.959707 GTCTCATCAGATCGGGTTAGGT 59.040 50.000 0.00 0.00 0.00 3.08
459 464 2.959030 TGTCTCATCAGATCGGGTTAGG 59.041 50.000 0.00 0.00 0.00 2.69
460 465 4.655762 TTGTCTCATCAGATCGGGTTAG 57.344 45.455 0.00 0.00 0.00 2.34
461 466 4.676986 CGTTTGTCTCATCAGATCGGGTTA 60.677 45.833 0.00 0.00 0.00 2.85
462 467 3.600388 GTTTGTCTCATCAGATCGGGTT 58.400 45.455 0.00 0.00 0.00 4.11
463 468 2.417379 CGTTTGTCTCATCAGATCGGGT 60.417 50.000 0.00 0.00 0.00 5.28
464 469 2.196749 CGTTTGTCTCATCAGATCGGG 58.803 52.381 0.00 0.00 0.00 5.14
465 470 2.196749 CCGTTTGTCTCATCAGATCGG 58.803 52.381 0.00 0.00 0.00 4.18
466 471 2.196749 CCCGTTTGTCTCATCAGATCG 58.803 52.381 0.00 0.00 0.00 3.69
467 472 3.190874 GACCCGTTTGTCTCATCAGATC 58.809 50.000 0.00 0.00 32.39 2.75
468 473 2.093447 GGACCCGTTTGTCTCATCAGAT 60.093 50.000 0.00 0.00 35.54 2.90
469 474 1.275291 GGACCCGTTTGTCTCATCAGA 59.725 52.381 0.00 0.00 35.54 3.27
470 475 1.276421 AGGACCCGTTTGTCTCATCAG 59.724 52.381 0.00 0.00 35.54 2.90
471 476 1.348064 AGGACCCGTTTGTCTCATCA 58.652 50.000 0.00 0.00 35.54 3.07
472 477 2.347731 GAAGGACCCGTTTGTCTCATC 58.652 52.381 0.00 0.00 35.54 2.92
473 478 1.337823 CGAAGGACCCGTTTGTCTCAT 60.338 52.381 0.00 0.00 35.54 2.90
474 479 0.032952 CGAAGGACCCGTTTGTCTCA 59.967 55.000 0.00 0.00 35.54 3.27
475 480 0.033090 ACGAAGGACCCGTTTGTCTC 59.967 55.000 0.00 0.00 36.83 3.36
476 481 0.249741 CACGAAGGACCCGTTTGTCT 60.250 55.000 0.00 0.00 38.29 3.41
477 482 0.249573 TCACGAAGGACCCGTTTGTC 60.250 55.000 0.00 0.00 38.29 3.18
478 483 0.531311 GTCACGAAGGACCCGTTTGT 60.531 55.000 0.00 0.00 38.29 2.83
479 484 1.554042 CGTCACGAAGGACCCGTTTG 61.554 60.000 0.00 0.00 38.29 2.93
480 485 1.300388 CGTCACGAAGGACCCGTTT 60.300 57.895 0.00 0.00 38.29 3.60
481 486 2.337532 CGTCACGAAGGACCCGTT 59.662 61.111 0.00 0.00 38.29 4.44
482 487 3.677648 CCGTCACGAAGGACCCGT 61.678 66.667 0.00 0.00 41.36 5.28
483 488 2.922950 TTCCGTCACGAAGGACCCG 61.923 63.158 0.00 0.00 38.67 5.28
484 489 1.373873 GTTCCGTCACGAAGGACCC 60.374 63.158 0.00 0.00 38.67 4.46
485 490 1.373873 GGTTCCGTCACGAAGGACC 60.374 63.158 0.00 0.00 38.67 4.46
486 491 0.883833 TAGGTTCCGTCACGAAGGAC 59.116 55.000 0.00 0.00 38.67 3.85
487 492 1.270550 GTTAGGTTCCGTCACGAAGGA 59.729 52.381 0.00 0.00 37.19 3.36
488 493 1.670967 GGTTAGGTTCCGTCACGAAGG 60.671 57.143 0.00 0.00 0.00 3.46
489 494 1.670967 GGGTTAGGTTCCGTCACGAAG 60.671 57.143 0.00 0.00 0.00 3.79
490 495 0.318120 GGGTTAGGTTCCGTCACGAA 59.682 55.000 0.00 0.00 0.00 3.85
491 496 0.827089 TGGGTTAGGTTCCGTCACGA 60.827 55.000 0.00 0.00 0.00 4.35
492 497 0.033781 TTGGGTTAGGTTCCGTCACG 59.966 55.000 0.00 0.00 0.00 4.35
493 498 1.804601 CTTGGGTTAGGTTCCGTCAC 58.195 55.000 0.00 0.00 0.00 3.67
494 499 0.035739 GCTTGGGTTAGGTTCCGTCA 59.964 55.000 0.00 0.00 0.00 4.35
495 500 0.675837 GGCTTGGGTTAGGTTCCGTC 60.676 60.000 0.00 0.00 0.00 4.79
496 501 1.377612 GGCTTGGGTTAGGTTCCGT 59.622 57.895 0.00 0.00 0.00 4.69
497 502 1.743995 CGGCTTGGGTTAGGTTCCG 60.744 63.158 0.00 0.00 0.00 4.30
498 503 2.044555 GCGGCTTGGGTTAGGTTCC 61.045 63.158 0.00 0.00 0.00 3.62
499 504 2.044555 GGCGGCTTGGGTTAGGTTC 61.045 63.158 0.00 0.00 0.00 3.62
500 505 2.035155 GGCGGCTTGGGTTAGGTT 59.965 61.111 0.00 0.00 0.00 3.50
501 506 2.933834 AGGCGGCTTGGGTTAGGT 60.934 61.111 5.25 0.00 0.00 3.08
502 507 2.438434 CAGGCGGCTTGGGTTAGG 60.438 66.667 9.66 0.00 0.00 2.69
503 508 3.134127 GCAGGCGGCTTGGGTTAG 61.134 66.667 9.66 0.00 40.25 2.34
509 514 4.093952 CTGTTCGCAGGCGGCTTG 62.094 66.667 9.66 7.85 41.40 4.01
510 515 4.314440 TCTGTTCGCAGGCGGCTT 62.314 61.111 9.66 0.00 45.04 4.35
511 516 4.749310 CTCTGTTCGCAGGCGGCT 62.749 66.667 14.24 5.25 45.04 5.52
512 517 4.742201 TCTCTGTTCGCAGGCGGC 62.742 66.667 14.24 0.00 45.04 6.53
513 518 1.880340 GATCTCTGTTCGCAGGCGG 60.880 63.158 14.24 0.00 45.04 6.13
514 519 2.226896 CGATCTCTGTTCGCAGGCG 61.227 63.158 7.46 7.46 45.04 5.52
515 520 1.142778 GACGATCTCTGTTCGCAGGC 61.143 60.000 0.00 0.00 45.04 4.85
516 521 0.171231 TGACGATCTCTGTTCGCAGG 59.829 55.000 0.00 0.00 45.04 4.85
517 522 1.543614 CTGACGATCTCTGTTCGCAG 58.456 55.000 0.00 0.00 46.29 5.18
518 523 0.171231 CCTGACGATCTCTGTTCGCA 59.829 55.000 0.00 0.00 40.19 5.10
519 524 0.526524 CCCTGACGATCTCTGTTCGC 60.527 60.000 0.00 0.00 40.19 4.70
520 525 0.526524 GCCCTGACGATCTCTGTTCG 60.527 60.000 0.00 0.00 42.20 3.95
521 526 0.532573 TGCCCTGACGATCTCTGTTC 59.467 55.000 0.00 0.00 0.00 3.18
522 527 0.534412 CTGCCCTGACGATCTCTGTT 59.466 55.000 0.00 0.00 0.00 3.16
523 528 1.326213 CCTGCCCTGACGATCTCTGT 61.326 60.000 0.00 0.00 0.00 3.41
524 529 1.039785 TCCTGCCCTGACGATCTCTG 61.040 60.000 0.00 0.00 0.00 3.35
525 530 0.324738 TTCCTGCCCTGACGATCTCT 60.325 55.000 0.00 0.00 0.00 3.10
526 531 0.103937 CTTCCTGCCCTGACGATCTC 59.896 60.000 0.00 0.00 0.00 2.75
527 532 1.965754 GCTTCCTGCCCTGACGATCT 61.966 60.000 0.00 0.00 35.15 2.75
528 533 1.522580 GCTTCCTGCCCTGACGATC 60.523 63.158 0.00 0.00 35.15 3.69
529 534 2.586792 GCTTCCTGCCCTGACGAT 59.413 61.111 0.00 0.00 35.15 3.73
540 545 4.798682 ATCCGACCGGGGCTTCCT 62.799 66.667 6.32 0.00 36.01 3.36
541 546 4.237207 GATCCGACCGGGGCTTCC 62.237 72.222 6.32 0.00 36.01 3.46
542 547 4.237207 GGATCCGACCGGGGCTTC 62.237 72.222 6.32 0.00 36.01 3.86
567 572 2.757980 TTTTCTTCCTTCCCGCCGGG 62.758 60.000 18.41 18.41 46.11 5.73
568 573 1.302993 TTTTCTTCCTTCCCGCCGG 60.303 57.895 0.00 0.00 0.00 6.13
569 574 1.583495 GGTTTTCTTCCTTCCCGCCG 61.583 60.000 0.00 0.00 0.00 6.46
570 575 1.583495 CGGTTTTCTTCCTTCCCGCC 61.583 60.000 0.00 0.00 0.00 6.13
571 576 0.887836 ACGGTTTTCTTCCTTCCCGC 60.888 55.000 0.00 0.00 38.99 6.13
572 577 0.872388 CACGGTTTTCTTCCTTCCCG 59.128 55.000 0.00 0.00 41.09 5.14
573 578 1.202842 TCCACGGTTTTCTTCCTTCCC 60.203 52.381 0.00 0.00 0.00 3.97
574 579 2.265589 TCCACGGTTTTCTTCCTTCC 57.734 50.000 0.00 0.00 0.00 3.46
575 580 3.676093 AGATCCACGGTTTTCTTCCTTC 58.324 45.455 0.00 0.00 0.00 3.46
576 581 3.072476 TGAGATCCACGGTTTTCTTCCTT 59.928 43.478 0.00 0.00 0.00 3.36
577 582 2.637872 TGAGATCCACGGTTTTCTTCCT 59.362 45.455 0.00 0.00 0.00 3.36
578 583 3.053831 TGAGATCCACGGTTTTCTTCC 57.946 47.619 0.00 0.00 0.00 3.46
579 584 3.120649 CGTTGAGATCCACGGTTTTCTTC 60.121 47.826 0.00 0.00 0.00 2.87
580 585 2.806244 CGTTGAGATCCACGGTTTTCTT 59.194 45.455 0.00 0.00 0.00 2.52
581 586 2.413837 CGTTGAGATCCACGGTTTTCT 58.586 47.619 0.00 0.00 0.00 2.52
582 587 1.463444 CCGTTGAGATCCACGGTTTTC 59.537 52.381 15.34 0.00 40.49 2.29
583 588 1.519408 CCGTTGAGATCCACGGTTTT 58.481 50.000 15.34 0.00 40.49 2.43
584 589 0.953960 GCCGTTGAGATCCACGGTTT 60.954 55.000 22.02 0.00 46.35 3.27
585 590 1.375523 GCCGTTGAGATCCACGGTT 60.376 57.895 22.02 0.00 46.35 4.44
586 591 2.264794 GCCGTTGAGATCCACGGT 59.735 61.111 22.02 0.00 46.35 4.83
588 593 2.885644 CCGCCGTTGAGATCCACG 60.886 66.667 0.00 0.00 0.00 4.94
589 594 3.195698 GCCGCCGTTGAGATCCAC 61.196 66.667 0.00 0.00 0.00 4.02
590 595 4.812476 CGCCGCCGTTGAGATCCA 62.812 66.667 0.00 0.00 0.00 3.41
591 596 4.508128 TCGCCGCCGTTGAGATCC 62.508 66.667 0.00 0.00 35.54 3.36
592 597 2.884087 TTCTCGCCGCCGTTGAGATC 62.884 60.000 6.40 0.00 38.46 2.75
593 598 2.890847 CTTCTCGCCGCCGTTGAGAT 62.891 60.000 6.40 0.00 38.46 2.75
594 599 3.626680 CTTCTCGCCGCCGTTGAGA 62.627 63.158 1.91 1.91 37.00 3.27
595 600 3.181967 CTTCTCGCCGCCGTTGAG 61.182 66.667 0.00 0.00 35.54 3.02
596 601 3.909258 GACTTCTCGCCGCCGTTGA 62.909 63.158 0.00 0.00 35.54 3.18
597 602 3.479269 GACTTCTCGCCGCCGTTG 61.479 66.667 0.00 0.00 35.54 4.10
606 611 2.042520 CTCTCGGAGGCGACTTCTCG 62.043 65.000 4.96 0.00 44.43 4.04
607 612 1.720694 CCTCTCGGAGGCGACTTCTC 61.721 65.000 4.96 0.00 43.29 2.87
608 613 1.751162 CCTCTCGGAGGCGACTTCT 60.751 63.158 4.96 0.00 43.29 2.85
609 614 2.802106 CCTCTCGGAGGCGACTTC 59.198 66.667 4.96 0.00 43.29 3.01
617 622 1.478916 GGGTTTCTCTTCCTCTCGGAG 59.521 57.143 0.00 0.00 41.25 4.63
618 623 1.077334 AGGGTTTCTCTTCCTCTCGGA 59.923 52.381 0.00 0.00 37.60 4.55
619 624 1.562783 AGGGTTTCTCTTCCTCTCGG 58.437 55.000 0.00 0.00 0.00 4.63
620 625 2.427812 GGTAGGGTTTCTCTTCCTCTCG 59.572 54.545 0.00 0.00 32.46 4.04
621 626 3.715287 AGGTAGGGTTTCTCTTCCTCTC 58.285 50.000 0.00 0.00 32.46 3.20
622 627 3.841255 CAAGGTAGGGTTTCTCTTCCTCT 59.159 47.826 0.00 0.00 32.46 3.69
623 628 3.838903 TCAAGGTAGGGTTTCTCTTCCTC 59.161 47.826 0.00 0.00 32.46 3.71
624 629 3.841255 CTCAAGGTAGGGTTTCTCTTCCT 59.159 47.826 0.00 0.00 34.85 3.36
625 630 3.055021 CCTCAAGGTAGGGTTTCTCTTCC 60.055 52.174 0.00 0.00 32.55 3.46
626 631 4.209307 CCTCAAGGTAGGGTTTCTCTTC 57.791 50.000 0.00 0.00 32.55 2.87
636 641 2.696187 GCTACTTCTCCCTCAAGGTAGG 59.304 54.545 0.00 0.00 36.75 3.18
637 642 2.696187 GGCTACTTCTCCCTCAAGGTAG 59.304 54.545 0.00 0.00 36.75 3.18
638 643 2.748388 GGCTACTTCTCCCTCAAGGTA 58.252 52.381 0.00 0.00 36.75 3.08
639 644 1.574263 GGCTACTTCTCCCTCAAGGT 58.426 55.000 0.00 0.00 36.75 3.50
640 645 0.461961 CGGCTACTTCTCCCTCAAGG 59.538 60.000 0.00 0.00 0.00 3.61
641 646 1.134965 CACGGCTACTTCTCCCTCAAG 60.135 57.143 0.00 0.00 0.00 3.02
642 647 0.895530 CACGGCTACTTCTCCCTCAA 59.104 55.000 0.00 0.00 0.00 3.02
643 648 0.251653 ACACGGCTACTTCTCCCTCA 60.252 55.000 0.00 0.00 0.00 3.86
644 649 1.760192 TACACGGCTACTTCTCCCTC 58.240 55.000 0.00 0.00 0.00 4.30
645 650 2.456073 ATACACGGCTACTTCTCCCT 57.544 50.000 0.00 0.00 0.00 4.20
646 651 2.557490 CCTATACACGGCTACTTCTCCC 59.443 54.545 0.00 0.00 0.00 4.30
647 652 3.484407 TCCTATACACGGCTACTTCTCC 58.516 50.000 0.00 0.00 0.00 3.71
648 653 4.136051 ACTCCTATACACGGCTACTTCTC 58.864 47.826 0.00 0.00 0.00 2.87
649 654 4.167652 ACTCCTATACACGGCTACTTCT 57.832 45.455 0.00 0.00 0.00 2.85
650 655 5.062528 AGTACTCCTATACACGGCTACTTC 58.937 45.833 0.00 0.00 0.00 3.01
651 656 5.046288 AGTACTCCTATACACGGCTACTT 57.954 43.478 0.00 0.00 0.00 2.24
652 657 4.703379 AGTACTCCTATACACGGCTACT 57.297 45.455 0.00 0.00 0.00 2.57
653 658 4.391523 GCTAGTACTCCTATACACGGCTAC 59.608 50.000 0.00 0.00 0.00 3.58
654 659 4.040829 TGCTAGTACTCCTATACACGGCTA 59.959 45.833 0.00 0.00 0.00 3.93
655 660 3.181447 TGCTAGTACTCCTATACACGGCT 60.181 47.826 0.00 0.00 0.00 5.52
656 661 3.144506 TGCTAGTACTCCTATACACGGC 58.855 50.000 0.00 0.00 0.00 5.68
657 662 4.577693 TGTTGCTAGTACTCCTATACACGG 59.422 45.833 0.00 0.00 0.00 4.94
658 663 5.296283 AGTGTTGCTAGTACTCCTATACACG 59.704 44.000 0.00 0.00 37.39 4.49
659 664 6.696441 AGTGTTGCTAGTACTCCTATACAC 57.304 41.667 0.00 9.08 35.12 2.90
660 665 7.713734 AAAGTGTTGCTAGTACTCCTATACA 57.286 36.000 0.00 0.00 0.00 2.29
661 666 7.861872 GCTAAAGTGTTGCTAGTACTCCTATAC 59.138 40.741 0.00 0.00 0.00 1.47
662 667 7.558807 TGCTAAAGTGTTGCTAGTACTCCTATA 59.441 37.037 0.00 0.00 0.00 1.31
663 668 6.380274 TGCTAAAGTGTTGCTAGTACTCCTAT 59.620 38.462 0.00 0.00 0.00 2.57
664 669 5.713389 TGCTAAAGTGTTGCTAGTACTCCTA 59.287 40.000 0.00 0.00 0.00 2.94
665 670 4.527038 TGCTAAAGTGTTGCTAGTACTCCT 59.473 41.667 0.00 0.00 0.00 3.69
666 671 4.817517 TGCTAAAGTGTTGCTAGTACTCC 58.182 43.478 0.00 0.00 0.00 3.85
667 672 5.869888 ACATGCTAAAGTGTTGCTAGTACTC 59.130 40.000 0.00 0.00 0.00 2.59
668 673 5.794894 ACATGCTAAAGTGTTGCTAGTACT 58.205 37.500 0.00 0.00 0.00 2.73
669 674 6.481954 AACATGCTAAAGTGTTGCTAGTAC 57.518 37.500 0.00 0.00 37.19 2.73
670 675 7.383687 ACTAACATGCTAAAGTGTTGCTAGTA 58.616 34.615 0.00 0.00 38.84 1.82
671 676 6.231211 ACTAACATGCTAAAGTGTTGCTAGT 58.769 36.000 0.00 0.00 38.84 2.57
672 677 6.727824 ACTAACATGCTAAAGTGTTGCTAG 57.272 37.500 0.00 0.00 38.84 3.42
673 678 8.786826 ATAACTAACATGCTAAAGTGTTGCTA 57.213 30.769 0.00 0.00 38.84 3.49
674 679 7.687941 ATAACTAACATGCTAAAGTGTTGCT 57.312 32.000 0.00 0.00 38.84 3.91
675 680 8.742554 AAATAACTAACATGCTAAAGTGTTGC 57.257 30.769 0.00 0.00 38.84 4.17
679 684 9.774742 GGAAGAAATAACTAACATGCTAAAGTG 57.225 33.333 0.00 0.00 0.00 3.16
680 685 8.957466 GGGAAGAAATAACTAACATGCTAAAGT 58.043 33.333 0.00 0.00 0.00 2.66
681 686 8.406297 GGGGAAGAAATAACTAACATGCTAAAG 58.594 37.037 0.00 0.00 0.00 1.85
682 687 7.066525 CGGGGAAGAAATAACTAACATGCTAAA 59.933 37.037 0.00 0.00 0.00 1.85
683 688 6.540914 CGGGGAAGAAATAACTAACATGCTAA 59.459 38.462 0.00 0.00 0.00 3.09
684 689 6.053005 CGGGGAAGAAATAACTAACATGCTA 58.947 40.000 0.00 0.00 0.00 3.49
685 690 4.881850 CGGGGAAGAAATAACTAACATGCT 59.118 41.667 0.00 0.00 0.00 3.79
686 691 4.036380 CCGGGGAAGAAATAACTAACATGC 59.964 45.833 0.00 0.00 0.00 4.06
687 692 4.578928 CCCGGGGAAGAAATAACTAACATG 59.421 45.833 14.71 0.00 0.00 3.21
688 693 4.788679 CCCGGGGAAGAAATAACTAACAT 58.211 43.478 14.71 0.00 0.00 2.71
689 694 3.622953 GCCCGGGGAAGAAATAACTAACA 60.623 47.826 25.28 0.00 0.00 2.41
690 695 2.947652 GCCCGGGGAAGAAATAACTAAC 59.052 50.000 25.28 0.00 0.00 2.34
691 696 2.092267 GGCCCGGGGAAGAAATAACTAA 60.092 50.000 25.28 0.00 0.00 2.24
692 697 1.491754 GGCCCGGGGAAGAAATAACTA 59.508 52.381 25.28 0.00 0.00 2.24
693 698 0.257905 GGCCCGGGGAAGAAATAACT 59.742 55.000 25.28 0.00 0.00 2.24
694 699 0.754217 GGGCCCGGGGAAGAAATAAC 60.754 60.000 25.28 0.00 0.00 1.89
695 700 1.616367 GGGCCCGGGGAAGAAATAA 59.384 57.895 25.28 0.00 0.00 1.40
696 701 2.388610 GGGGCCCGGGGAAGAAATA 61.389 63.158 25.28 0.00 0.00 1.40
697 702 2.868790 TAGGGGCCCGGGGAAGAAAT 62.869 60.000 25.28 0.00 0.00 2.17
698 703 3.582833 TAGGGGCCCGGGGAAGAAA 62.583 63.158 25.28 0.00 0.00 2.52
699 704 3.582833 TTAGGGGCCCGGGGAAGAA 62.583 63.158 25.28 0.00 0.00 2.52
700 705 3.582833 TTTAGGGGCCCGGGGAAGA 62.583 63.158 25.28 0.00 0.00 2.87
701 706 2.157798 TTTTTAGGGGCCCGGGGAAG 62.158 60.000 25.28 0.00 0.00 3.46
702 707 2.168421 TTTTTAGGGGCCCGGGGAA 61.168 57.895 25.28 8.67 0.00 3.97
703 708 2.534794 TTTTTAGGGGCCCGGGGA 60.535 61.111 25.28 1.78 0.00 4.81
718 723 4.668138 TTAGGGGCCTGTCTATGTTTTT 57.332 40.909 0.84 0.00 0.00 1.94
719 724 4.668138 TTTAGGGGCCTGTCTATGTTTT 57.332 40.909 0.84 0.00 0.00 2.43
720 725 4.668138 TTTTAGGGGCCTGTCTATGTTT 57.332 40.909 0.84 0.00 0.00 2.83
721 726 4.668138 TTTTTAGGGGCCTGTCTATGTT 57.332 40.909 0.84 0.00 0.00 2.71
788 795 2.761213 GCAAGGGCCCAATGGAGG 60.761 66.667 27.56 5.73 0.00 4.30
1107 1126 1.674057 CTGCTTGAGGAAGGACCGT 59.326 57.895 0.00 0.00 44.74 4.83
1209 1364 1.495584 GGTTGAAGTCGAACAGCGCA 61.496 55.000 11.47 0.00 40.61 6.09
1470 1625 2.683212 AGCTTCGCCTCCAGCTCT 60.683 61.111 0.00 0.00 43.12 4.09
1814 1970 1.577736 AGGACCACTCAGATTCAGGG 58.422 55.000 0.00 0.00 0.00 4.45
1880 2043 9.374838 CCCGTCCTATAATATAATAGCGTTTTT 57.625 33.333 0.00 0.00 0.00 1.94
1881 2044 7.983484 CCCCGTCCTATAATATAATAGCGTTTT 59.017 37.037 0.00 0.00 0.00 2.43
1882 2045 7.418254 CCCCCGTCCTATAATATAATAGCGTTT 60.418 40.741 0.00 0.00 0.00 3.60
1883 2046 6.041296 CCCCCGTCCTATAATATAATAGCGTT 59.959 42.308 0.00 0.00 0.00 4.84
1884 2047 5.537674 CCCCCGTCCTATAATATAATAGCGT 59.462 44.000 0.00 0.00 0.00 5.07
1885 2048 5.771666 TCCCCCGTCCTATAATATAATAGCG 59.228 44.000 0.00 0.00 0.00 4.26
1886 2049 7.607615 TTCCCCCGTCCTATAATATAATAGC 57.392 40.000 0.00 0.00 0.00 2.97
1892 2055 9.210228 CTTTAGTATTCCCCCGTCCTATAATAT 57.790 37.037 0.00 0.00 0.00 1.28
1893 2056 8.179487 ACTTTAGTATTCCCCCGTCCTATAATA 58.821 37.037 0.00 0.00 0.00 0.98
1894 2057 7.021251 ACTTTAGTATTCCCCCGTCCTATAAT 58.979 38.462 0.00 0.00 0.00 1.28
1895 2058 6.384603 ACTTTAGTATTCCCCCGTCCTATAA 58.615 40.000 0.00 0.00 0.00 0.98
1896 2059 5.969086 ACTTTAGTATTCCCCCGTCCTATA 58.031 41.667 0.00 0.00 0.00 1.31
1897 2060 4.824276 ACTTTAGTATTCCCCCGTCCTAT 58.176 43.478 0.00 0.00 0.00 2.57
1898 2061 4.270317 ACTTTAGTATTCCCCCGTCCTA 57.730 45.455 0.00 0.00 0.00 2.94
1899 2062 3.126323 ACTTTAGTATTCCCCCGTCCT 57.874 47.619 0.00 0.00 0.00 3.85
1900 2063 4.218312 TCTACTTTAGTATTCCCCCGTCC 58.782 47.826 0.00 0.00 0.00 4.79
1901 2064 5.859205 TTCTACTTTAGTATTCCCCCGTC 57.141 43.478 0.00 0.00 0.00 4.79
1902 2065 5.664457 ACATTCTACTTTAGTATTCCCCCGT 59.336 40.000 0.00 0.00 0.00 5.28
1903 2066 6.170846 ACATTCTACTTTAGTATTCCCCCG 57.829 41.667 0.00 0.00 0.00 5.73
1904 2067 6.329460 AGGACATTCTACTTTAGTATTCCCCC 59.671 42.308 0.00 0.00 0.00 5.40
1905 2068 7.376335 AGGACATTCTACTTTAGTATTCCCC 57.624 40.000 0.00 0.00 0.00 4.81
1906 2069 9.110502 CAAAGGACATTCTACTTTAGTATTCCC 57.889 37.037 0.00 0.00 33.47 3.97
1907 2070 9.668497 ACAAAGGACATTCTACTTTAGTATTCC 57.332 33.333 0.00 0.00 33.47 3.01
1979 2142 7.512746 AGGTGGTCTAATGTTAGCCTAATGATA 59.487 37.037 11.69 0.00 32.07 2.15
1988 2151 5.484715 TGTTGTAGGTGGTCTAATGTTAGC 58.515 41.667 0.00 0.00 0.00 3.09
1992 2155 5.755409 TCATGTTGTAGGTGGTCTAATGT 57.245 39.130 0.00 0.00 0.00 2.71
1995 2158 7.681679 TGTTAATCATGTTGTAGGTGGTCTAA 58.318 34.615 0.00 0.00 0.00 2.10
2004 2167 6.051717 CCCCTCTCTGTTAATCATGTTGTAG 58.948 44.000 0.00 0.00 0.00 2.74
2008 2171 5.501156 GAACCCCTCTCTGTTAATCATGTT 58.499 41.667 0.00 0.00 0.00 2.71
2046 2209 1.656652 CAGGCATGGGACTTTACTCG 58.343 55.000 0.00 0.00 0.00 4.18
2068 2231 1.885887 GGTTACACCAAGCTTGCATCA 59.114 47.619 21.43 3.02 38.42 3.07
2069 2232 1.202348 GGGTTACACCAAGCTTGCATC 59.798 52.381 21.43 7.23 41.02 3.91
2070 2233 1.256812 GGGTTACACCAAGCTTGCAT 58.743 50.000 21.43 8.29 41.02 3.96
2071 2234 0.106469 TGGGTTACACCAAGCTTGCA 60.106 50.000 21.43 7.93 41.02 4.08
2072 2235 1.067635 CATGGGTTACACCAAGCTTGC 60.068 52.381 21.43 5.95 45.13 4.01
2073 2236 2.513753 TCATGGGTTACACCAAGCTTG 58.486 47.619 19.93 19.93 45.13 4.01
2074 2237 2.969821 TCATGGGTTACACCAAGCTT 57.030 45.000 0.00 0.00 45.13 3.74
2075 2238 4.584638 TTATCATGGGTTACACCAAGCT 57.415 40.909 0.00 0.00 45.13 3.74
2076 2239 6.062095 AGTATTATCATGGGTTACACCAAGC 58.938 40.000 0.00 0.00 45.13 4.01
2077 2240 7.013274 CCAAGTATTATCATGGGTTACACCAAG 59.987 40.741 0.00 0.00 45.13 3.61
2078 2241 6.831353 CCAAGTATTATCATGGGTTACACCAA 59.169 38.462 0.00 0.00 45.13 3.67
2079 2242 6.361433 CCAAGTATTATCATGGGTTACACCA 58.639 40.000 0.00 0.00 46.24 4.17
2093 2256 4.283722 GGAGACGATGGTCCCAAGTATTAT 59.716 45.833 4.00 0.00 44.54 1.28
2095 2258 2.434702 GGAGACGATGGTCCCAAGTATT 59.565 50.000 4.00 0.00 44.54 1.89
2096 2259 2.040178 GGAGACGATGGTCCCAAGTAT 58.960 52.381 4.00 0.00 44.54 2.12
2101 2264 2.108168 CTAAAGGAGACGATGGTCCCA 58.892 52.381 14.61 0.00 44.54 4.37
2102 2265 1.202545 GCTAAAGGAGACGATGGTCCC 60.203 57.143 4.00 5.84 44.54 4.46
2103 2266 1.480954 TGCTAAAGGAGACGATGGTCC 59.519 52.381 4.00 0.00 44.54 4.46
2151 2481 3.536956 TCCACACGATAATGGAGGTTC 57.463 47.619 0.00 0.00 40.17 3.62
2157 2487 5.201713 ACTCACTATCCACACGATAATGG 57.798 43.478 0.00 0.00 32.61 3.16
2165 2495 3.251571 GTCGGAAACTCACTATCCACAC 58.748 50.000 0.00 0.00 32.58 3.82
2176 2506 2.047560 CCCCACCGTCGGAAACTC 60.048 66.667 20.51 0.00 0.00 3.01
2183 2513 4.636435 AAAGTGCCCCCACCGTCG 62.636 66.667 0.00 0.00 43.09 5.12
2194 2524 8.107399 ACAACCTAGTATAAAAGGAAAAGTGC 57.893 34.615 8.32 0.00 36.66 4.40
2210 2540 1.120530 CCGCCTCCATACAACCTAGT 58.879 55.000 0.00 0.00 0.00 2.57
2218 2548 2.836360 TCGGTCCCGCCTCCATAC 60.836 66.667 0.00 0.00 39.59 2.39
2251 2581 2.504175 GTGTCCTAATAAGGGGCACTGA 59.496 50.000 9.82 0.00 43.84 3.41
2253 2583 2.557869 TGTGTCCTAATAAGGGGCACT 58.442 47.619 16.58 0.00 43.45 4.40
2254 2584 3.577805 ATGTGTCCTAATAAGGGGCAC 57.422 47.619 10.12 10.12 43.84 5.01
2266 2596 1.319541 CCTCCGATCGTATGTGTCCT 58.680 55.000 15.09 0.00 0.00 3.85
2269 2599 2.818432 GGATACCTCCGATCGTATGTGT 59.182 50.000 15.09 5.78 0.00 3.72
2289 2619 3.954258 ACAACCAGAAAGAGAAAAGGTGG 59.046 43.478 0.00 0.00 0.00 4.61
2332 2663 6.842676 ACCTAATGATCAAGGGGAAGAATAC 58.157 40.000 16.24 0.00 37.18 1.89
2340 2671 5.067805 GCTTGTTAACCTAATGATCAAGGGG 59.932 44.000 16.24 12.42 37.18 4.79
2507 2839 1.354368 GGATCCTGGAAACAAGGACCA 59.646 52.381 3.84 0.00 42.06 4.02
2514 2846 1.682849 CCCGTGGATCCTGGAAACA 59.317 57.895 21.24 0.00 39.59 2.83
2555 2887 9.613428 CTGACAATTTACCCTTGTATGATAAGA 57.387 33.333 0.00 0.00 36.98 2.10
2569 2901 6.093633 CCACTTACTAAGGCTGACAATTTACC 59.906 42.308 0.88 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.