>input_sequence_73336
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----------------------------------------------------------ATGGCGACGGCTATGATGGCTG
CAGCCACCACCTCCTGCTCCCCGCCCCGAGCGCTCCTCAAGCCCGCGGCCTCCTCCAGCCCCGCGCCGCCGCCCAGGCCG
CAGCCACGGTCCTTCCTCAAGCAGCTCCCGGGGCTCGCCGCGACGG----------------------------------
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----------------------CGGCGGCGGCGGCCGTCGCCTACGTGCCTCTCCCGGCGCTGGCCGTGGAGATGGAGAA
GGCTGCGCTGTTCGACTTCAACCTGACGCTCCCGGCGATCACGATCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGC
TCTACTTCTCGCCGCTGGGCAAGTTCATGGACGAGCGGGACGCCAAGATCCGCGCGGAGCTCGGCGGCGTCAAGGACGCC
TCCGAGGAGGTGCGGCAGCTAGAGGAGCAGGCCCAGGCCATTCTCAAGGCGGCTCGCGCGGAGATCGCGGCGGCGCTCAA
CAAGATGAAGAAGGAGACGACCACAGAGCTGGAGGCGAAGCTCGACGAGGGCCGCCGCCGCGTGGAGGCAGAGCTCGTGG
AGGCGCTCGCGAGCCTCGAGGGGCAGAAGGAGGAGGCCATCAAGGCGCTGGACGCGCAGATCGTGTCGCTCAGCGACGAG
ATCGTCAAGAAGGTGCTCCCATCCGCGTGA--------------------------------------------------
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>chr4A_1_TraesCS4A01G099800
GAGATCCGGGACGTCATAGATCTGAAT---CCATATGTCCGGTGTATCCAGCTTGACATGGGACGGTTGAGTTACTCCAT
CGTAAGGGGCAATGATAACAGCGTTTCCACGGAAATTCCATGGCCCCTCTTGCATTACTCTCTCCCAGTTACCCAGGCAC
CGGAACTGCAAAGTGTATATATTTGACTCCAGCGGTTTAAACTTGACATCTTGAGCTAGATCCCACGCAGCGCTCATGTT
GCGGAAAAACCAGCCCTGGCTATAGGT-TTATCAATATGAACGCGAGCAATTGCCAACCATCTTGCTGCATCTTCCGGGA
CAGATCCCTCATCGACCACCACATTGTCCATATCATCCTCCTGAAGGCCTAGTTCAACCATTAGTTTCTCAATCTTTGAT
GCAGAAGAAGAGCCCCCGGCCGTAGCCGATCCGCTCGCATCTCCCGCAGCCATGAACGCTAAACCTAACCCGATCTGATG
AGACAAACGGGTCCTTCGTGACGGAACCTAACCCAAGCCGCCTGCGAACAGAGATCGTCAGGGCAGGAAGCCCCGGTCGG
ATCCCCCGCAGCCCGGCGGGAAGGAAGAAAACCGTGGATCTCAACGGCGGCGAGAAGTCGCCTCCGAGAGGAAGAGAAAC
CCTACCTTGAGGGAGAAGTAGCCGTGTATAGGAGTACTAGCAACACTTTAGCATGTTAGTTATTTCTTCCCCGGGCCCCT
AAAAAAACATAGACAGGCCCCTAAAAAAAC--AGACAGGCCCAACTCATTAAAAGCCTGGCACTGGGCCATGGGCCTCCA
TTGGGCCCTTG-----------CCGACGCCCCAAAACAGGTTATAATATCGGCAGGCGTT-AGTGGCAGCAAGCGCGAGC
GGCAGCGTGTGGCCTCCGTTGGCTGGCAAACCACAGGCCACCCCGTTCGGATAGATAGCCGCCCGCCTCCCCTCTCCCCA
CCACACGGCCACAATCCGACTCACCACCGCGCCTCTTCCTCCTCCCGCTCACCCACCCATGGCGACGGCTATGATGGCTG
CAGCCACCACCTCCTGCTCCCCGCCCCGAGCGCTCCTCAAGCCCGCGGCCTCCTCCAGCCCCGCGCCGCCGCCCAGGCCG
CAGCCACGGTCCTTCCTCAAGCAGCTCCCGGGGCTCGCCGCGACGG----------------------------------
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----------------------CGGCGGCGGCGGCCGTCGCCTACGTGCCTCTCCCGGCGCTGGCCGTGGAGATGGAGAA
GGCTGCGCTGTTCGACTTCAACCTGACGCTCCCGGCGATCACGATCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGC
TCTACTTCTCGCCGCTGGGCAAGTTCATGGACGAGCGGGACGCCAAGATCCGCGCGGAGCTCGGCGGCGTCAAGGACGCC
TCCGAGGAGGTGCGGCAGCTAGAGGAGCAGGCCCAGGCCATTCTCAAGGCGGCTCGCGCGGAGATCGCGGCGGCGCTCAA
CAAGATGAAGAAGGAGACGACCACAGAGCTGGAGGCGAAGCTCGACGAGGGCCGCCGCCGCGTGGAGGCAGAGCTCGTGG
AGGCGCTCGCGAGCCTCGAGGGGCAGAAGGAGGAGGCCATCAAGGCGCTGGACGCGCAGATCGTGTCGCTCAGCGACGAG
ATCGTCAAGAAGGTGCTCCCATCCGCGTGAAAACATTAGTAGATCACGCAGCGCGCAGCAGCCGGCGCAATCCC-CCGTT
TCATAGTAAAGATTTCTAGTTCTTGATGTGTAATGTATACGCCCACTGGGCTGCCTCCCCTAAGAATGTAACTGAATCAA
ACATTCTGTGATCGGGTATAAATGAATGATCCTTTTGTACACTACTCTGC-------CCTGAATCTGAGTGGTCCTTTAA
TCCCCAATTCATTTACTTCCGGGAGAACCCAAATATAGTGTTAAAAACGCTATTATATTATAGGACGGGGGAATACTAAA
GTAGAATGTCCTTTGTTTATGACATGTTGTTAGACATTATTCTTTAGCATTACTGTAATAGTATCATTAGGCTAACATTA
GACCACCTACAACATGATTAACAGAGAGGGGTTCGCAAGAACCTGTACCGAGTAAAGTCCCATGCCTGCTTGATGCAAGC
TTGGTGTAACCCATGATAATACTTGG------------------------------------------------------
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---------------------------------GACCATCGTCTCCTTTAGCACCTCACTAGGATCGGGCGTTAGGGGTG
GAACCTCCATTATCGTGTGGATAGTGAGTTTCCGACGGTGGGGGCACTTTTCCTTTTATACTAGGTTGTATGGAGGCGGG
ACCGAGACCATGTCGTTGGTTCAGTGCCCCTTATTAGGACACATACGATCGGAGGTATCCACCTTTTCTCTTTCTGGTTG
TTACAACTA-AGATCAATTTCAGTATTCTTCCCCTTGATCATTAGGTTAACAAGCATCATAAGCCCACTTTTAATAGAAA
TAACATACCAACTAAGGTGTTGCAATGGTCAATGAAATGTCACTGTACTT-AATACTTATAGTGTATCATTCTATTTTAA
AATGGGTAGCATGTTACTTTAGGAGTTGGTTTATTTAATGGTCCTTGTTTCCAGGATCCACGGGCTTTCCTAACCCACGC
GAGGAATCTTATCATACAAGGGTAAATTGTCAGCCTTAGTAAGTGGAACCAAAAAACTTATAAATCAAACATCATATGTT
TGATTGT
>chr7B_2
-AGATCCGGGACATCATGGATCTGAATAATCCATATGTCCAGGGTATCCAACTTGACTTGAGACGGCTGTGCCACTCCAT
CAT-AGGGGATATGATGACGGTGTTACCTCTAAAGTTCCATGGGCCCTCTTGCATTACTCTCTCCCAGTCCCCCGGGCTG
CGGAATTGCATCGTGTACAGGTTTGTCTCCAGAGGCTTGAACTTGACATCCTGAGCTAGATCCCAAGCAGCTCTCATGTT
TCTGAAAAACCAGCCCTGGCTATAGGGCTTATCGATGTGCACTCGCGCTATTGACAACCATCTTGCTGCATCTGCGGGCA
CAGATTCCTCATCGACCACGACATCGTCCATGTCGTCCTCCTGGAGGCCGAGCTCTGCCATTAGTTTCTCGATCTCTGAT
GCAGAAGTAG----------------------------------------------------------------------
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--------------------------------------------------------------------------AGCCCC
CGGCCGTAGCCGATCCGCTCGCAGCTTCCGCAGCCATGTTGCTAACCCTAACCCGATCTGATGAGACAAACAGGTTTTTG
TGACGGAACCTAACCCGAACCGCCTGCAAACGAAGGTGCCAAGGCACAGAAACCCTGGACGGACCCCACGCAGACCGGCG
GGAAGGAAGAAAGAGTGGATCTCAGCGGCGGCGGAAATCGCCTCCGAAAGGAAGAAACCCTAACTTGAGGGA--------
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>chr4D_739
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----------------------AAAAAAACATAGGGAGGCCCAACTCATTAAAAGCCTGGCACTGGGTCAT---------
--GGGCCTCCATTGGGCCCTTACCGACGCCCCAAAACAGGTTATAATATCGGCAGGCGTTTAGTGGCAGCAAGCGCGAGC
GGCAGCGTGTGGCCTCCGTTGGTTGGCAAACCACAGGCCACCCCGTTCGGATAGATAGCCGCCCGCCTCCGCTCTCCCCA
CCACACGGCCACAACCCGACTCACCACCGCGCCTCTTCCTCCTCCCGCTCACCCACCCATGGCGACGGCTATGATGGCTG
CAGCCACCACCTCCTGCTCCCCGCGCCGAGCGCTCCTCAAGCCCGCGGCCTCCTCCAGCTCCGCGCCGCCGCCCAGGCCG
CAGCCTCGGTCCTTCCTCAAGCAGCTCCCGGGGCTCGCCGCGACGG----------------------------------
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----------------------CGGCTGCGGCGGCCGTCGCCTCCGTGCCTCTCCCGGCCCTGGCCGTGGAGATGGAGAA
GGCGGCGCTGTTCGACTTCAACCTGACGCTCCCGGCGATCACGATCGAGTTCCTGCTGCTGATGGTGGCGCTGGACAAGC
TCTACTTCTCGCCGCTGGGCAAGTTCATGGACGAGCGGGACGCCAAGATCCGCGCGGAGCTCGGCGGCGTCAAGGACGCC
TCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCCAGGCCATTCTCAAGGCGGCGCGCGCGGAGATCGCGGCGGCGCTCAA
CAAGATGAAGAAGGAGACGACCACGGAGCTGGAAGCGAAGCTCGACGAGGGCCGCCGCCGCGTGGAGGCAGAGCTCGTGG
AGGCGCTCGCGAGCCTCGAGGGGCAGAAGGAGGAGGCCATCAAGGCGCTGGACGCGCAGATCGTGTCGCTCAGCGACGAG
ATCGTCAAGAAGGTGCTCCCATCCGCGTGAAAACATTAGTAGATCACGCAGCGCGCAGCAGCCGGCGCAATCCCCCCGTT
TCATAGTAAAGATTTCTAGTTCTTGATGTGTAATGTATACGCCCACTGGGCTGCCTCCCCTAAGAATGTAACTGAATCAA
ACATTCTGTGATCGGGTATAAATGAATGATCCTTTTGTACACTACTCTGTCCTGA-------ATCTAAGTGGTCCTTTAA
TCCCCAATTCATTT----CCGGGAGAACCCAAGGCAAAAATG-------------------------------TACGAAA
GTAGACTGTCCCTTGTT--------------AGACATTATTCTTTAGCATTACCGTAATAGAATCATTAGCCTAGCACTA
GACCACATACGACATGATTAACAGAGAAGGGTTCGCAAGAACCTGTACGGAGTAAAGTCCCATGCCTGCTC---------
--GGTGTAACCCATGGTCGTACTCCTTCTGTCCGAAAAAGCATGTCTCTCAAATGGATATATCTAGCATCAATTAAGCGC
TAAATACATCCATTTGAGAGGCAAACTTGGAACAAGCTTTTTCAGATGGAGAGAGTACTTCGGATCTCCTATAGCAAAGG
CGGCAATATGTGTGGTGGTTGGCGGTGGTAGACGACCATCGTCTCCTTTAGCACCTCACTAGGATCGGGCGTTAGGGGTG
AAACCTACATTATCATGTGGATAGTTAGTTTCTGACGGTGGGGACCCTTTTCCTTTTATGCTAGGTTCTATGGAGGCGGG
ACCGAGACCATGTCGTTGGTACGATGCCCCTTATTCGGGCACATACGTC--GAGGTATTCACCTTTTCTCTTTCTGGTTG
TTACAACTAGAGATCAATTTCAATATTCTTTCCCTTGATCATTAGGTTAACAAGCATCATAAGCCCACTTTTAATAGAAA
TAACATACCAACTAAGGTGTTGCAATGGTCAATGAAATGTCACTGTACGTCAATACTTATAGTATACCATTCTATTTTAA
AATGGGTAGCATGTTACTTTAGGAGTTGGTTTATTTAACGGTCCTCGTTTCCAGGATCCACATGCTTTCCTAACCCACGC
GAGGAACCTTATCATACAAGCGTAAATTGTCAGCCTTCGTAAGCGGAACC-AAAAACTTATAAATCAAACATCCTTTGTT
TGATTG-
>chr4B_739
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----------------------AAAAAAACATAGACAGGCCCAACTGATTAAAAGCCTGACATTGGGTCAT---------
--GGGCCCTTG-----------CCGACGCCCCAAAACAGGTTATAATATCGGCAGGCGTT-AGTGGCAGCAAGCGCGAGC
GGCAGCGTGTGGCCTCCGTTGGTTGGCAAACCACAGGCCACCCCGTTCGGATAGATAGCCGCCCGCCTCCCCTCTCCCCA
CCACACGGCCACAACCCGACTCACCACCGCGCCTCTTCCTCCTCCCGCTCACCCACCCATGGCGACGGCTATGATGGCTG
CAGCCACCACCTCCTGCTCCCCGCGCCGAGCGCTCCTCAAGCCCGCGGCCTCCTCCAGCTCCGCACCGCCGCCCAGGCCG
CAGCCTCGGTCCTTCCTCAAGCAGCTCCCGGGGCTCGCCGCGACGG----------------------------------
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----------------------CGGCGGCGGCGGCCGTCGCCTCCGCGCCTCTCCCGGCGCTGGCCGTGGAGATGGAGAA
GGCGGCTCTGTTCGACTTCAACCTGACGCTCCCGGCGATCACGATTGAGTTCCTGCTGCTGATGGTTGCGCTGGACAAGC
TCTACTTCTCGCCGCTGGGCAAGTTCATGGACGAGCGGGACGCCAAGATCCGCGCGGAGCTCGGCGGCGTCAAGGACGCC
TCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCCAGGCCATTCTCAAGGCGGCGCGCGCGGAGATCGCGGCGGCGCTCAA
TAAGATGAAGAAGGAGACGACCAAGGAGCTGGAGGCGAAGCTGGACGAGGGCCGCCGCCGCGTGGAGGCAGAGCTCGTGG
AGGCGCTCGCCAGCCTCGAGGGGCAGAAGGAGGAGGCCATCAAGGCGCTGGACGCGCAGATCGTGTCGCTCAGCGACGAG
ATCGTCAAGAAGGTGCTCCCATCCGCGTGAAAACATTAGTAGATCACGCAGCGCGCAGCAGCCGGCGCAACCCC-CCGTT
TCATAGTAAAGATTACTAGTTCTTGATGTGTAATGTATACGCCCACTGGGCTGCCTCCCCTAAGAATGTAACTGAATCAA
ACAGTCTGTGATCGGGTATAAATGAATGATCCTTTTGTACACAACTCTGTCCTGATTCCTGAATGTGAGTGGTGCTTTGA
TCCCCAAATCATTTA-----------------------------------------------------------------
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>SNPs
S-----------S----S----------------------S-S-------S------S--S-----S--S-SS-------
-S-S-----SS-----S--S-S---S--S-SS--S--------S-------------------------SS---S---SS
-----S----SS-----S-SS----S------S--S--S-----------S--------------S-----S--------
S-S-----------------------S------S--S--S--S--S--S----S-------------------S-S--S-
-----S-------------S----S------S--S--------S-----S--S--SS-------------S----S----
-------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------------------------------------------S---SSSSSSSSS
SS------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------S-----------------------------------------------------------------
------------------------S----------------------------------S--------------------
-----S--------------------------------------------------------------------------
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-------------------------------------------S------------------------------------
---S----------------------------------------------------------------------------
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--------------------S--------------------------------S--------------------------
------------------------S-------------------------------------------------------
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-------------------------------------------------S------------------------------
---------------SSS--------------SSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---
-----S-----S-----SSSSSSSSSSSSSS----------------------S-------S--------S---S--S--
------S---S----------------S--------------------S---------------------SSSSSSSSSS
SS-------------S-SS----SSS------------------------------------------------------
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S-----S-------S----------S------S----------S-S-------------S-------S------------
--------------------S-SS-----------S--S--------SSSS-------S---------------------
----------------------S-------S-------------------------------------------------
------------------------------------------------S--------------S--S-------------
--------------------------------------S------S---------------SS-----------------
------S-------------S----------------S-----S------S----------------------S-S----
------S
>forward_498
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------------------------------------------------------------------------------TG
AGACAAACGGGTCCTTCG--------------------------------------------------------------
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>reverse_2234
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-------------------------------------------------------------------------TGCAAGC
TTGGTGTAACCCA-------------------------------------------------------------------
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