Multiple sequence alignment - TraesCS4A01G099300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G099300 chr4A 100.000 3990 0 0 1 3990 111296126 111292137 0.000000e+00 7369
1 TraesCS4A01G099300 chr4D 91.410 3609 143 55 434 3967 353519703 353523219 0.000000e+00 4793
2 TraesCS4A01G099300 chr4B 92.128 3214 130 35 645 3801 437071342 437074489 0.000000e+00 4420
3 TraesCS4A01G099300 chr4B 95.376 173 7 1 3819 3990 437074557 437074729 1.410000e-69 274
4 TraesCS4A01G099300 chr4B 96.053 76 3 0 3846 3921 437074490 437074565 1.510000e-24 124
5 TraesCS4A01G099300 chr6A 94.534 311 17 0 125 435 585195222 585194912 7.760000e-132 481
6 TraesCS4A01G099300 chr7D 93.910 312 19 0 126 437 444357231 444356920 4.670000e-129 472
7 TraesCS4A01G099300 chr1D 93.375 317 20 1 126 442 205083895 205084210 6.040000e-128 468
8 TraesCS4A01G099300 chr3D 94.118 306 18 0 127 432 20892904 20893209 2.170000e-127 466
9 TraesCS4A01G099300 chr3D 93.569 311 20 0 126 436 111762852 111763162 7.810000e-127 464
10 TraesCS4A01G099300 chr2D 94.118 306 18 0 127 432 76640437 76640742 2.170000e-127 466
11 TraesCS4A01G099300 chr2D 94.118 306 18 0 127 432 402238544 402238849 2.170000e-127 466
12 TraesCS4A01G099300 chr2D 93.291 313 21 0 126 438 356604088 356604400 2.810000e-126 462
13 TraesCS4A01G099300 chr2D 82.036 501 63 12 1283 1773 568462574 568463057 6.210000e-108 401
14 TraesCS4A01G099300 chr7B 92.523 321 23 1 120 440 518385449 518385768 3.630000e-125 459
15 TraesCS4A01G099300 chr6D 76.051 547 93 19 1809 2345 417227283 417226765 2.380000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G099300 chr4A 111292137 111296126 3989 True 7369 7369 100.000 1 3990 1 chr4A.!!$R1 3989
1 TraesCS4A01G099300 chr4D 353519703 353523219 3516 False 4793 4793 91.410 434 3967 1 chr4D.!!$F1 3533
2 TraesCS4A01G099300 chr4B 437071342 437074729 3387 False 1606 4420 94.519 645 3990 3 chr4B.!!$F1 3345
3 TraesCS4A01G099300 chr6D 417226765 417227283 518 True 250 250 76.051 1809 2345 1 chr6D.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.034477 ATAGGCCCTGTTTGGTTCGG 60.034 55.0 0.00 0.00 0.00 4.30 F
248 249 0.035152 TGGCAACCCAGCTGATACAG 60.035 55.0 17.39 1.90 35.79 2.74 F
314 315 0.036022 GTCCTGAGCTGCTTCCACTT 59.964 55.0 2.53 0.00 0.00 3.16 F
394 395 0.036483 TTAGATTCTGCTGCGTGGCA 60.036 50.0 0.00 4.59 40.15 4.92 F
893 926 0.037590 CTCCCAAATTCCCCGACACA 59.962 55.0 0.00 0.00 0.00 3.72 F
1215 1275 0.874607 GAACGAATCGCACGGGCTAT 60.875 55.0 8.62 0.00 38.10 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 1665 3.120321 AGCACGACCAAATCACAGTTA 57.880 42.857 0.00 0.0 0.00 2.24 R
1713 1783 4.100189 CACCCTTCCAAACAACCATTAACA 59.900 41.667 0.00 0.0 0.00 2.41 R
2270 2364 1.864711 CCATTATTGGTCGGTAGTGCG 59.135 52.381 0.00 0.0 38.30 5.34 R
2279 2373 5.645497 CCTAGCATAGCTTCCATTATTGGTC 59.355 44.000 0.00 0.0 41.03 4.02 R
2534 2629 2.126888 CCATTGCAACACGGCGAC 60.127 61.111 16.62 0.0 36.28 5.19 R
3167 3263 1.069668 AGTAGTGTTCACCGGTTGACC 59.930 52.381 2.97 0.0 32.26 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.613026 AAGACACATGTGACCAACGA 57.387 45.000 31.94 0.00 0.00 3.85
20 21 2.613026 AGACACATGTGACCAACGAA 57.387 45.000 31.94 0.00 0.00 3.85
21 22 2.210116 AGACACATGTGACCAACGAAC 58.790 47.619 31.94 10.61 0.00 3.95
22 23 1.937223 GACACATGTGACCAACGAACA 59.063 47.619 31.94 0.00 0.00 3.18
23 24 2.548057 GACACATGTGACCAACGAACAT 59.452 45.455 31.94 4.79 34.92 2.71
24 25 3.734463 ACACATGTGACCAACGAACATA 58.266 40.909 31.94 0.00 33.31 2.29
25 26 3.745975 ACACATGTGACCAACGAACATAG 59.254 43.478 31.94 0.00 33.31 2.23
26 27 3.993736 CACATGTGACCAACGAACATAGA 59.006 43.478 21.64 0.00 33.31 1.98
27 28 3.994392 ACATGTGACCAACGAACATAGAC 59.006 43.478 0.00 0.00 33.31 2.59
28 29 3.737032 TGTGACCAACGAACATAGACA 57.263 42.857 0.00 0.00 0.00 3.41
29 30 4.061357 TGTGACCAACGAACATAGACAA 57.939 40.909 0.00 0.00 0.00 3.18
30 31 4.443621 TGTGACCAACGAACATAGACAAA 58.556 39.130 0.00 0.00 0.00 2.83
31 32 5.060506 TGTGACCAACGAACATAGACAAAT 58.939 37.500 0.00 0.00 0.00 2.32
32 33 5.049749 TGTGACCAACGAACATAGACAAATG 60.050 40.000 0.00 0.00 0.00 2.32
33 34 5.178623 GTGACCAACGAACATAGACAAATGA 59.821 40.000 0.00 0.00 0.00 2.57
34 35 5.408299 TGACCAACGAACATAGACAAATGAG 59.592 40.000 0.00 0.00 0.00 2.90
35 36 4.695455 ACCAACGAACATAGACAAATGAGG 59.305 41.667 0.00 0.00 0.00 3.86
36 37 4.935205 CCAACGAACATAGACAAATGAGGA 59.065 41.667 0.00 0.00 0.00 3.71
37 38 5.063944 CCAACGAACATAGACAAATGAGGAG 59.936 44.000 0.00 0.00 0.00 3.69
38 39 5.407407 ACGAACATAGACAAATGAGGAGT 57.593 39.130 0.00 0.00 0.00 3.85
39 40 5.171476 ACGAACATAGACAAATGAGGAGTG 58.829 41.667 0.00 0.00 0.00 3.51
40 41 4.568359 CGAACATAGACAAATGAGGAGTGG 59.432 45.833 0.00 0.00 0.00 4.00
41 42 4.494091 ACATAGACAAATGAGGAGTGGG 57.506 45.455 0.00 0.00 0.00 4.61
42 43 4.104086 ACATAGACAAATGAGGAGTGGGA 58.896 43.478 0.00 0.00 0.00 4.37
43 44 4.163078 ACATAGACAAATGAGGAGTGGGAG 59.837 45.833 0.00 0.00 0.00 4.30
44 45 1.912043 AGACAAATGAGGAGTGGGAGG 59.088 52.381 0.00 0.00 0.00 4.30
45 46 0.329596 ACAAATGAGGAGTGGGAGGC 59.670 55.000 0.00 0.00 0.00 4.70
46 47 0.394899 CAAATGAGGAGTGGGAGGCC 60.395 60.000 0.00 0.00 0.00 5.19
47 48 1.915078 AAATGAGGAGTGGGAGGCCG 61.915 60.000 0.00 0.00 0.00 6.13
48 49 3.625632 ATGAGGAGTGGGAGGCCGT 62.626 63.158 0.00 0.00 0.00 5.68
49 50 3.003763 GAGGAGTGGGAGGCCGTT 61.004 66.667 0.00 0.00 0.00 4.44
50 51 3.316573 GAGGAGTGGGAGGCCGTTG 62.317 68.421 0.00 0.00 0.00 4.10
51 52 3.637273 GGAGTGGGAGGCCGTTGT 61.637 66.667 0.00 0.00 0.00 3.32
52 53 2.358737 GAGTGGGAGGCCGTTGTG 60.359 66.667 0.00 0.00 0.00 3.33
53 54 3.168528 AGTGGGAGGCCGTTGTGT 61.169 61.111 0.00 0.00 0.00 3.72
54 55 2.978010 GTGGGAGGCCGTTGTGTG 60.978 66.667 0.00 0.00 0.00 3.82
55 56 3.484806 TGGGAGGCCGTTGTGTGT 61.485 61.111 0.00 0.00 0.00 3.72
56 57 2.978010 GGGAGGCCGTTGTGTGTG 60.978 66.667 0.00 0.00 0.00 3.82
57 58 2.978010 GGAGGCCGTTGTGTGTGG 60.978 66.667 0.00 0.00 0.00 4.17
58 59 2.110213 GAGGCCGTTGTGTGTGGA 59.890 61.111 0.00 0.00 0.00 4.02
59 60 2.203153 AGGCCGTTGTGTGTGGAC 60.203 61.111 0.00 0.00 0.00 4.02
60 61 3.645975 GGCCGTTGTGTGTGGACG 61.646 66.667 0.00 0.00 36.61 4.79
61 62 4.307908 GCCGTTGTGTGTGGACGC 62.308 66.667 0.00 0.00 35.60 5.19
62 63 2.587753 CCGTTGTGTGTGGACGCT 60.588 61.111 0.00 0.00 35.60 5.07
63 64 1.300311 CCGTTGTGTGTGGACGCTA 60.300 57.895 0.00 0.00 35.60 4.26
64 65 1.282248 CCGTTGTGTGTGGACGCTAG 61.282 60.000 0.00 0.00 35.60 3.42
65 66 1.860078 GTTGTGTGTGGACGCTAGC 59.140 57.895 4.06 4.06 33.42 3.42
66 67 1.663388 TTGTGTGTGGACGCTAGCG 60.663 57.895 34.27 34.27 46.03 4.26
67 68 3.479269 GTGTGTGGACGCTAGCGC 61.479 66.667 35.63 26.41 44.19 5.92
68 69 4.735132 TGTGTGGACGCTAGCGCC 62.735 66.667 35.63 32.92 44.19 6.53
72 73 4.221422 TGGACGCTAGCGCCCATC 62.221 66.667 37.00 25.60 46.41 3.51
74 75 4.266070 GACGCTAGCGCCCATCGA 62.266 66.667 35.63 0.00 44.19 3.59
75 76 3.559657 GACGCTAGCGCCCATCGAT 62.560 63.158 35.63 14.84 44.19 3.59
76 77 2.196382 GACGCTAGCGCCCATCGATA 62.196 60.000 35.63 0.00 44.19 2.92
77 78 1.139734 CGCTAGCGCCCATCGATAT 59.860 57.895 26.07 0.00 38.47 1.63
78 79 0.380733 CGCTAGCGCCCATCGATATA 59.619 55.000 26.07 0.00 38.47 0.86
79 80 1.001268 CGCTAGCGCCCATCGATATAT 60.001 52.381 26.07 0.00 38.47 0.86
80 81 2.225727 CGCTAGCGCCCATCGATATATA 59.774 50.000 26.07 0.00 38.47 0.86
81 82 3.119814 CGCTAGCGCCCATCGATATATAT 60.120 47.826 26.07 0.00 38.47 0.86
82 83 4.169508 GCTAGCGCCCATCGATATATATG 58.830 47.826 2.29 0.00 38.47 1.78
83 84 3.667497 AGCGCCCATCGATATATATGG 57.333 47.619 2.29 7.35 42.02 2.74
97 98 9.244292 TCGATATATATGGGCTCATATTAGTCC 57.756 37.037 23.83 9.34 42.23 3.85
103 104 2.744202 GGGCTCATATTAGTCCAATGCG 59.256 50.000 2.52 0.00 41.19 4.73
104 105 2.744202 GGCTCATATTAGTCCAATGCGG 59.256 50.000 0.00 0.00 0.00 5.69
105 106 3.403038 GCTCATATTAGTCCAATGCGGT 58.597 45.455 0.00 0.00 35.57 5.68
106 107 3.815401 GCTCATATTAGTCCAATGCGGTT 59.185 43.478 0.00 0.00 35.57 4.44
107 108 4.319766 GCTCATATTAGTCCAATGCGGTTG 60.320 45.833 0.00 0.00 37.57 3.77
108 109 4.776349 TCATATTAGTCCAATGCGGTTGT 58.224 39.130 1.64 0.00 36.01 3.32
109 110 5.919755 TCATATTAGTCCAATGCGGTTGTA 58.080 37.500 1.64 0.00 36.01 2.41
110 111 6.350103 TCATATTAGTCCAATGCGGTTGTAA 58.650 36.000 1.64 0.00 36.01 2.41
111 112 6.824196 TCATATTAGTCCAATGCGGTTGTAAA 59.176 34.615 1.64 0.00 36.01 2.01
112 113 7.500892 TCATATTAGTCCAATGCGGTTGTAAAT 59.499 33.333 1.64 0.00 36.01 1.40
113 114 3.848272 AGTCCAATGCGGTTGTAAATG 57.152 42.857 1.64 0.00 36.01 2.32
114 115 2.491693 AGTCCAATGCGGTTGTAAATGG 59.508 45.455 1.64 0.00 36.01 3.16
115 116 2.230266 GTCCAATGCGGTTGTAAATGGT 59.770 45.455 1.64 0.00 36.01 3.55
116 117 2.490115 TCCAATGCGGTTGTAAATGGTC 59.510 45.455 1.64 0.00 36.01 4.02
117 118 2.491693 CCAATGCGGTTGTAAATGGTCT 59.508 45.455 1.64 0.00 36.01 3.85
118 119 3.692101 CCAATGCGGTTGTAAATGGTCTA 59.308 43.478 1.64 0.00 36.01 2.59
119 120 4.201910 CCAATGCGGTTGTAAATGGTCTAG 60.202 45.833 1.64 0.00 36.01 2.43
120 121 3.688694 TGCGGTTGTAAATGGTCTAGT 57.311 42.857 0.00 0.00 0.00 2.57
121 122 3.331150 TGCGGTTGTAAATGGTCTAGTG 58.669 45.455 0.00 0.00 0.00 2.74
122 123 3.244284 TGCGGTTGTAAATGGTCTAGTGT 60.244 43.478 0.00 0.00 0.00 3.55
123 124 3.370061 GCGGTTGTAAATGGTCTAGTGTC 59.630 47.826 0.00 0.00 0.00 3.67
124 125 4.562082 CGGTTGTAAATGGTCTAGTGTCA 58.438 43.478 0.00 0.00 0.00 3.58
125 126 5.175859 CGGTTGTAAATGGTCTAGTGTCAT 58.824 41.667 0.00 0.00 0.00 3.06
126 127 6.334989 CGGTTGTAAATGGTCTAGTGTCATA 58.665 40.000 0.00 0.00 0.00 2.15
127 128 6.475727 CGGTTGTAAATGGTCTAGTGTCATAG 59.524 42.308 0.00 0.00 0.00 2.23
128 129 6.761714 GGTTGTAAATGGTCTAGTGTCATAGG 59.238 42.308 0.00 0.00 0.00 2.57
129 130 5.914033 TGTAAATGGTCTAGTGTCATAGGC 58.086 41.667 0.00 0.00 0.00 3.93
130 131 4.423625 AAATGGTCTAGTGTCATAGGCC 57.576 45.455 0.00 0.00 46.04 5.19
131 132 1.789523 TGGTCTAGTGTCATAGGCCC 58.210 55.000 0.00 0.00 45.39 5.80
132 133 1.291033 TGGTCTAGTGTCATAGGCCCT 59.709 52.381 0.00 0.00 45.39 5.19
133 134 1.689273 GGTCTAGTGTCATAGGCCCTG 59.311 57.143 0.00 0.00 40.99 4.45
134 135 2.389715 GTCTAGTGTCATAGGCCCTGT 58.610 52.381 0.00 0.00 0.00 4.00
135 136 2.766828 GTCTAGTGTCATAGGCCCTGTT 59.233 50.000 0.00 0.00 0.00 3.16
136 137 3.197983 GTCTAGTGTCATAGGCCCTGTTT 59.802 47.826 0.00 0.00 0.00 2.83
137 138 2.496899 AGTGTCATAGGCCCTGTTTG 57.503 50.000 0.00 0.00 0.00 2.93
138 139 1.004745 AGTGTCATAGGCCCTGTTTGG 59.995 52.381 0.00 0.00 0.00 3.28
139 140 1.072266 TGTCATAGGCCCTGTTTGGT 58.928 50.000 0.00 0.00 0.00 3.67
140 141 1.427368 TGTCATAGGCCCTGTTTGGTT 59.573 47.619 0.00 0.00 0.00 3.67
141 142 2.092323 GTCATAGGCCCTGTTTGGTTC 58.908 52.381 0.00 0.00 0.00 3.62
142 143 1.094785 CATAGGCCCTGTTTGGTTCG 58.905 55.000 0.00 0.00 0.00 3.95
143 144 0.034477 ATAGGCCCTGTTTGGTTCGG 60.034 55.000 0.00 0.00 0.00 4.30
144 145 2.757980 TAGGCCCTGTTTGGTTCGGC 62.758 60.000 0.00 0.00 38.96 5.54
145 146 2.597510 GCCCTGTTTGGTTCGGCT 60.598 61.111 0.00 0.00 36.65 5.52
146 147 2.919494 GCCCTGTTTGGTTCGGCTG 61.919 63.158 0.00 0.00 36.65 4.85
147 148 1.528309 CCCTGTTTGGTTCGGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
148 149 1.654220 CCTGTTTGGTTCGGCTGTG 59.346 57.895 0.00 0.00 0.00 3.66
149 150 1.654220 CTGTTTGGTTCGGCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
150 151 0.817634 CTGTTTGGTTCGGCTGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
151 152 0.179004 TGTTTGGTTCGGCTGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
152 153 0.958822 GTTTGGTTCGGCTGTGGATT 59.041 50.000 0.00 0.00 0.00 3.01
153 154 1.339929 GTTTGGTTCGGCTGTGGATTT 59.660 47.619 0.00 0.00 0.00 2.17
154 155 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
155 156 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
156 157 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
157 158 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
158 159 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
159 160 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
160 161 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
161 162 2.747446 TCGGCTGTGGATTTCTAAAAGC 59.253 45.455 0.00 0.00 0.00 3.51
162 163 2.487762 CGGCTGTGGATTTCTAAAAGCA 59.512 45.455 0.00 0.00 0.00 3.91
163 164 3.426695 CGGCTGTGGATTTCTAAAAGCAG 60.427 47.826 0.00 0.00 0.00 4.24
164 165 3.505836 GCTGTGGATTTCTAAAAGCAGC 58.494 45.455 0.00 0.00 40.66 5.25
165 166 3.192212 GCTGTGGATTTCTAAAAGCAGCT 59.808 43.478 0.00 0.00 43.08 4.24
166 167 4.730657 CTGTGGATTTCTAAAAGCAGCTG 58.269 43.478 10.11 10.11 0.00 4.24
167 168 4.144297 TGTGGATTTCTAAAAGCAGCTGT 58.856 39.130 16.64 0.00 0.00 4.40
168 169 4.022935 TGTGGATTTCTAAAAGCAGCTGTG 60.023 41.667 16.64 0.00 0.00 3.66
169 170 4.216257 GTGGATTTCTAAAAGCAGCTGTGA 59.784 41.667 16.64 1.92 0.00 3.58
170 171 4.826733 TGGATTTCTAAAAGCAGCTGTGAA 59.173 37.500 16.64 7.75 0.00 3.18
171 172 5.301551 TGGATTTCTAAAAGCAGCTGTGAAA 59.698 36.000 16.64 15.06 0.00 2.69
172 173 6.183360 TGGATTTCTAAAAGCAGCTGTGAAAA 60.183 34.615 16.64 7.20 0.00 2.29
173 174 6.701400 GGATTTCTAAAAGCAGCTGTGAAAAA 59.299 34.615 16.64 7.71 0.00 1.94
174 175 7.386025 GGATTTCTAAAAGCAGCTGTGAAAAAT 59.614 33.333 16.64 11.76 0.00 1.82
175 176 7.698836 TTTCTAAAAGCAGCTGTGAAAAATC 57.301 32.000 16.64 0.00 0.00 2.17
176 177 6.639632 TCTAAAAGCAGCTGTGAAAAATCT 57.360 33.333 16.64 0.00 0.00 2.40
177 178 7.744087 TCTAAAAGCAGCTGTGAAAAATCTA 57.256 32.000 16.64 0.00 0.00 1.98
178 179 7.584987 TCTAAAAGCAGCTGTGAAAAATCTAC 58.415 34.615 16.64 0.00 0.00 2.59
179 180 6.396829 AAAAGCAGCTGTGAAAAATCTACT 57.603 33.333 16.64 0.00 0.00 2.57
180 181 5.368256 AAGCAGCTGTGAAAAATCTACTG 57.632 39.130 16.64 0.00 0.00 2.74
181 182 4.392940 AGCAGCTGTGAAAAATCTACTGT 58.607 39.130 16.64 0.00 0.00 3.55
182 183 5.551233 AGCAGCTGTGAAAAATCTACTGTA 58.449 37.500 16.64 0.00 0.00 2.74
183 184 5.641209 AGCAGCTGTGAAAAATCTACTGTAG 59.359 40.000 16.64 8.55 0.00 2.74
184 185 5.639506 GCAGCTGTGAAAAATCTACTGTAGA 59.360 40.000 19.01 19.01 39.50 2.59
185 186 6.147821 GCAGCTGTGAAAAATCTACTGTAGAA 59.852 38.462 20.40 5.66 38.50 2.10
186 187 7.307989 GCAGCTGTGAAAAATCTACTGTAGAAA 60.308 37.037 20.40 0.15 38.50 2.52
187 188 8.559536 CAGCTGTGAAAAATCTACTGTAGAAAA 58.440 33.333 20.40 0.00 38.50 2.29
188 189 9.120538 AGCTGTGAAAAATCTACTGTAGAAAAA 57.879 29.630 20.40 0.00 38.50 1.94
189 190 9.170584 GCTGTGAAAAATCTACTGTAGAAAAAC 57.829 33.333 20.40 13.11 38.50 2.43
197 198 8.958119 AATCTACTGTAGAAAAACAACTGTGA 57.042 30.769 20.40 0.00 38.50 3.58
198 199 8.958119 ATCTACTGTAGAAAAACAACTGTGAA 57.042 30.769 20.40 0.00 38.50 3.18
199 200 8.780846 TCTACTGTAGAAAAACAACTGTGAAA 57.219 30.769 14.87 0.00 0.00 2.69
200 201 9.221933 TCTACTGTAGAAAAACAACTGTGAAAA 57.778 29.630 14.87 0.00 0.00 2.29
201 202 9.834628 CTACTGTAGAAAAACAACTGTGAAAAA 57.165 29.630 9.22 0.00 0.00 1.94
203 204 9.705290 ACTGTAGAAAAACAACTGTGAAAAATT 57.295 25.926 0.00 0.00 0.00 1.82
209 210 9.824534 GAAAAACAACTGTGAAAAATTTGATGT 57.175 25.926 0.00 0.00 0.00 3.06
210 211 9.609950 AAAAACAACTGTGAAAAATTTGATGTG 57.390 25.926 0.00 0.00 0.00 3.21
211 212 8.545229 AAACAACTGTGAAAAATTTGATGTGA 57.455 26.923 0.00 0.00 0.00 3.58
212 213 8.545229 AACAACTGTGAAAAATTTGATGTGAA 57.455 26.923 0.00 0.00 0.00 3.18
213 214 8.545229 ACAACTGTGAAAAATTTGATGTGAAA 57.455 26.923 0.00 0.00 0.00 2.69
214 215 8.997323 ACAACTGTGAAAAATTTGATGTGAAAA 58.003 25.926 0.00 0.00 0.00 2.29
215 216 9.823098 CAACTGTGAAAAATTTGATGTGAAAAA 57.177 25.926 0.00 0.00 0.00 1.94
217 218 9.434420 ACTGTGAAAAATTTGATGTGAAAAAGA 57.566 25.926 0.00 0.00 0.00 2.52
225 226 9.696917 AAATTTGATGTGAAAAAGATGTAGGTC 57.303 29.630 0.00 0.00 0.00 3.85
226 227 7.815840 TTTGATGTGAAAAAGATGTAGGTCA 57.184 32.000 0.00 0.00 0.00 4.02
227 228 8.408043 TTTGATGTGAAAAAGATGTAGGTCAT 57.592 30.769 0.00 0.00 39.77 3.06
228 229 8.408043 TTGATGTGAAAAAGATGTAGGTCATT 57.592 30.769 0.00 0.00 36.83 2.57
229 230 8.408043 TGATGTGAAAAAGATGTAGGTCATTT 57.592 30.769 0.00 0.00 36.83 2.32
230 231 8.298854 TGATGTGAAAAAGATGTAGGTCATTTG 58.701 33.333 0.00 0.00 36.83 2.32
231 232 6.980593 TGTGAAAAAGATGTAGGTCATTTGG 58.019 36.000 0.00 0.00 36.83 3.28
232 233 5.863935 GTGAAAAAGATGTAGGTCATTTGGC 59.136 40.000 0.00 0.00 36.83 4.52
233 234 5.538053 TGAAAAAGATGTAGGTCATTTGGCA 59.462 36.000 0.00 0.00 36.83 4.92
234 235 6.041409 TGAAAAAGATGTAGGTCATTTGGCAA 59.959 34.615 0.00 0.00 36.83 4.52
235 236 5.391312 AAAGATGTAGGTCATTTGGCAAC 57.609 39.130 0.00 0.00 36.83 4.17
236 237 3.356290 AGATGTAGGTCATTTGGCAACC 58.644 45.455 0.00 0.00 36.83 3.77
237 238 1.917872 TGTAGGTCATTTGGCAACCC 58.082 50.000 0.00 0.00 33.33 4.11
238 239 1.145945 TGTAGGTCATTTGGCAACCCA 59.854 47.619 0.00 0.00 40.06 4.51
239 240 1.818674 GTAGGTCATTTGGCAACCCAG 59.181 52.381 0.00 0.00 43.37 4.45
240 241 1.187567 AGGTCATTTGGCAACCCAGC 61.188 55.000 0.00 0.00 43.37 4.85
241 242 1.187567 GGTCATTTGGCAACCCAGCT 61.188 55.000 0.00 0.00 43.37 4.24
242 243 0.037975 GTCATTTGGCAACCCAGCTG 60.038 55.000 6.78 6.78 43.37 4.24
243 244 0.178967 TCATTTGGCAACCCAGCTGA 60.179 50.000 17.39 0.00 43.37 4.26
244 245 0.899720 CATTTGGCAACCCAGCTGAT 59.100 50.000 17.39 0.00 43.37 2.90
245 246 2.101783 CATTTGGCAACCCAGCTGATA 58.898 47.619 17.39 0.00 43.37 2.15
246 247 1.544724 TTTGGCAACCCAGCTGATAC 58.455 50.000 17.39 0.00 43.37 2.24
247 248 0.403655 TTGGCAACCCAGCTGATACA 59.596 50.000 17.39 2.31 43.37 2.29
248 249 0.035152 TGGCAACCCAGCTGATACAG 60.035 55.000 17.39 1.90 35.79 2.74
271 272 3.753294 TTTTTAGATTTTGGCCCGCAA 57.247 38.095 0.00 0.00 0.00 4.85
272 273 2.734276 TTTAGATTTTGGCCCGCAAC 57.266 45.000 0.00 0.00 0.00 4.17
273 274 0.523966 TTAGATTTTGGCCCGCAACG 59.476 50.000 0.00 0.00 0.00 4.10
287 288 2.518949 CGCAACGGAATCAGATTTTGG 58.481 47.619 0.00 0.00 0.00 3.28
288 289 2.161410 CGCAACGGAATCAGATTTTGGA 59.839 45.455 0.00 0.00 0.00 3.53
289 290 3.365868 CGCAACGGAATCAGATTTTGGAA 60.366 43.478 0.00 0.00 0.00 3.53
290 291 4.555262 GCAACGGAATCAGATTTTGGAAA 58.445 39.130 0.00 0.00 0.00 3.13
291 292 4.622740 GCAACGGAATCAGATTTTGGAAAG 59.377 41.667 0.00 0.00 0.00 2.62
292 293 4.440839 ACGGAATCAGATTTTGGAAAGC 57.559 40.909 0.00 0.00 0.00 3.51
293 294 3.826157 ACGGAATCAGATTTTGGAAAGCA 59.174 39.130 0.00 0.00 0.00 3.91
294 295 4.168760 CGGAATCAGATTTTGGAAAGCAC 58.831 43.478 0.00 0.00 0.00 4.40
295 296 4.168760 GGAATCAGATTTTGGAAAGCACG 58.831 43.478 0.00 0.00 0.00 5.34
296 297 4.321230 GGAATCAGATTTTGGAAAGCACGT 60.321 41.667 0.00 0.00 0.00 4.49
297 298 3.896648 TCAGATTTTGGAAAGCACGTC 57.103 42.857 0.00 0.00 0.00 4.34
298 299 2.552315 TCAGATTTTGGAAAGCACGTCC 59.448 45.455 0.00 0.00 35.55 4.79
299 300 2.554032 CAGATTTTGGAAAGCACGTCCT 59.446 45.455 0.00 0.00 36.03 3.85
300 301 2.554032 AGATTTTGGAAAGCACGTCCTG 59.446 45.455 0.00 0.00 36.03 3.86
301 302 2.045561 TTTTGGAAAGCACGTCCTGA 57.954 45.000 0.00 0.00 36.03 3.86
302 303 1.593196 TTTGGAAAGCACGTCCTGAG 58.407 50.000 0.00 0.00 36.03 3.35
303 304 0.884704 TTGGAAAGCACGTCCTGAGC 60.885 55.000 0.00 0.00 36.03 4.26
305 306 1.294659 GGAAAGCACGTCCTGAGCTG 61.295 60.000 0.00 0.00 44.24 4.24
306 307 1.905922 GAAAGCACGTCCTGAGCTGC 61.906 60.000 0.00 0.00 44.24 5.25
307 308 2.388890 AAAGCACGTCCTGAGCTGCT 62.389 55.000 0.00 0.00 44.24 4.24
308 309 2.358003 GCACGTCCTGAGCTGCTT 60.358 61.111 2.53 0.00 0.00 3.91
309 310 2.386660 GCACGTCCTGAGCTGCTTC 61.387 63.158 2.53 0.00 0.00 3.86
310 311 1.739562 CACGTCCTGAGCTGCTTCC 60.740 63.158 2.53 0.00 0.00 3.46
311 312 2.210013 ACGTCCTGAGCTGCTTCCA 61.210 57.895 2.53 0.00 0.00 3.53
312 313 1.739562 CGTCCTGAGCTGCTTCCAC 60.740 63.158 2.53 0.00 0.00 4.02
313 314 1.676384 GTCCTGAGCTGCTTCCACT 59.324 57.895 2.53 0.00 0.00 4.00
314 315 0.036022 GTCCTGAGCTGCTTCCACTT 59.964 55.000 2.53 0.00 0.00 3.16
315 316 0.767375 TCCTGAGCTGCTTCCACTTT 59.233 50.000 2.53 0.00 0.00 2.66
316 317 1.143684 TCCTGAGCTGCTTCCACTTTT 59.856 47.619 2.53 0.00 0.00 2.27
317 318 1.268899 CCTGAGCTGCTTCCACTTTTG 59.731 52.381 2.53 0.00 0.00 2.44
318 319 1.268899 CTGAGCTGCTTCCACTTTTGG 59.731 52.381 2.53 0.00 45.56 3.28
319 320 1.322442 GAGCTGCTTCCACTTTTGGT 58.678 50.000 2.53 0.00 44.35 3.67
320 321 1.683385 GAGCTGCTTCCACTTTTGGTT 59.317 47.619 2.53 0.00 44.35 3.67
321 322 1.683385 AGCTGCTTCCACTTTTGGTTC 59.317 47.619 0.00 0.00 44.35 3.62
322 323 1.408702 GCTGCTTCCACTTTTGGTTCA 59.591 47.619 0.00 0.00 44.35 3.18
323 324 2.544486 GCTGCTTCCACTTTTGGTTCAG 60.544 50.000 0.00 0.00 44.35 3.02
324 325 2.951642 CTGCTTCCACTTTTGGTTCAGA 59.048 45.455 0.00 0.00 44.35 3.27
325 326 3.565307 TGCTTCCACTTTTGGTTCAGAT 58.435 40.909 0.00 0.00 44.35 2.90
326 327 3.960102 TGCTTCCACTTTTGGTTCAGATT 59.040 39.130 0.00 0.00 44.35 2.40
327 328 4.405358 TGCTTCCACTTTTGGTTCAGATTT 59.595 37.500 0.00 0.00 44.35 2.17
328 329 5.104982 TGCTTCCACTTTTGGTTCAGATTTT 60.105 36.000 0.00 0.00 44.35 1.82
329 330 5.234972 GCTTCCACTTTTGGTTCAGATTTTG 59.765 40.000 0.00 0.00 44.35 2.44
330 331 6.537453 TTCCACTTTTGGTTCAGATTTTGA 57.463 33.333 0.00 0.00 44.35 2.69
331 332 5.901552 TCCACTTTTGGTTCAGATTTTGAC 58.098 37.500 0.00 0.00 44.35 3.18
332 333 5.420421 TCCACTTTTGGTTCAGATTTTGACA 59.580 36.000 0.00 0.00 44.35 3.58
333 334 5.750067 CCACTTTTGGTTCAGATTTTGACAG 59.250 40.000 0.00 0.00 38.23 3.51
334 335 5.232838 CACTTTTGGTTCAGATTTTGACAGC 59.767 40.000 0.00 0.00 34.94 4.40
335 336 3.624326 TTGGTTCAGATTTTGACAGCG 57.376 42.857 0.00 0.00 34.94 5.18
336 337 1.879380 TGGTTCAGATTTTGACAGCGG 59.121 47.619 0.00 0.00 34.94 5.52
337 338 2.151202 GGTTCAGATTTTGACAGCGGA 58.849 47.619 0.00 0.00 34.94 5.54
338 339 2.749621 GGTTCAGATTTTGACAGCGGAT 59.250 45.455 0.00 0.00 34.94 4.18
339 340 3.191371 GGTTCAGATTTTGACAGCGGATT 59.809 43.478 0.00 0.00 34.94 3.01
340 341 4.321230 GGTTCAGATTTTGACAGCGGATTT 60.321 41.667 0.00 0.00 34.94 2.17
341 342 4.685169 TCAGATTTTGACAGCGGATTTC 57.315 40.909 0.00 0.00 0.00 2.17
342 343 4.326826 TCAGATTTTGACAGCGGATTTCT 58.673 39.130 0.00 0.00 0.00 2.52
343 344 4.154737 TCAGATTTTGACAGCGGATTTCTG 59.845 41.667 0.00 0.00 37.56 3.02
344 345 3.441572 AGATTTTGACAGCGGATTTCTGG 59.558 43.478 0.00 0.00 35.94 3.86
345 346 2.559698 TTTGACAGCGGATTTCTGGA 57.440 45.000 0.00 0.00 35.94 3.86
346 347 2.559698 TTGACAGCGGATTTCTGGAA 57.440 45.000 0.00 0.00 35.94 3.53
347 348 2.787473 TGACAGCGGATTTCTGGAAT 57.213 45.000 0.00 0.00 35.94 3.01
348 349 2.632377 TGACAGCGGATTTCTGGAATC 58.368 47.619 0.00 0.00 42.84 2.52
349 350 2.027285 TGACAGCGGATTTCTGGAATCA 60.027 45.455 10.70 0.00 44.91 2.57
350 351 2.611292 GACAGCGGATTTCTGGAATCAG 59.389 50.000 10.70 7.64 44.91 2.90
360 361 3.555527 TCTGGAATCAGATTCTGCTGG 57.444 47.619 20.41 8.40 44.39 4.85
361 362 2.172082 TCTGGAATCAGATTCTGCTGGG 59.828 50.000 20.41 7.01 44.39 4.45
362 363 1.918262 TGGAATCAGATTCTGCTGGGT 59.082 47.619 20.41 0.00 39.24 4.51
363 364 2.309755 TGGAATCAGATTCTGCTGGGTT 59.690 45.455 20.41 0.00 39.24 4.11
364 365 2.948315 GGAATCAGATTCTGCTGGGTTC 59.052 50.000 20.41 7.60 39.24 3.62
365 366 2.322355 ATCAGATTCTGCTGGGTTCG 57.678 50.000 8.89 0.00 36.55 3.95
366 367 0.391661 TCAGATTCTGCTGGGTTCGC 60.392 55.000 8.89 0.00 36.55 4.70
367 368 1.078143 AGATTCTGCTGGGTTCGCC 60.078 57.895 0.00 0.00 0.00 5.54
379 380 1.900245 GGTTCGCCCTTTGGTTTAGA 58.100 50.000 0.00 0.00 0.00 2.10
380 381 2.443416 GGTTCGCCCTTTGGTTTAGAT 58.557 47.619 0.00 0.00 0.00 1.98
381 382 2.823747 GGTTCGCCCTTTGGTTTAGATT 59.176 45.455 0.00 0.00 0.00 2.40
382 383 3.119602 GGTTCGCCCTTTGGTTTAGATTC 60.120 47.826 0.00 0.00 0.00 2.52
383 384 3.713826 TCGCCCTTTGGTTTAGATTCT 57.286 42.857 0.00 0.00 0.00 2.40
384 385 3.343617 TCGCCCTTTGGTTTAGATTCTG 58.656 45.455 0.00 0.00 0.00 3.02
385 386 2.159379 CGCCCTTTGGTTTAGATTCTGC 60.159 50.000 0.00 0.00 0.00 4.26
386 387 3.092301 GCCCTTTGGTTTAGATTCTGCT 58.908 45.455 0.00 0.00 0.00 4.24
387 388 3.119352 GCCCTTTGGTTTAGATTCTGCTG 60.119 47.826 0.00 0.00 0.00 4.41
388 389 3.119352 CCCTTTGGTTTAGATTCTGCTGC 60.119 47.826 0.00 0.00 0.00 5.25
389 390 3.426695 CCTTTGGTTTAGATTCTGCTGCG 60.427 47.826 0.00 0.00 0.00 5.18
390 391 2.472695 TGGTTTAGATTCTGCTGCGT 57.527 45.000 0.00 0.00 0.00 5.24
391 392 2.076100 TGGTTTAGATTCTGCTGCGTG 58.924 47.619 0.00 0.00 0.00 5.34
392 393 1.398390 GGTTTAGATTCTGCTGCGTGG 59.602 52.381 0.00 0.00 0.00 4.94
393 394 1.086696 TTTAGATTCTGCTGCGTGGC 58.913 50.000 0.00 0.00 0.00 5.01
394 395 0.036483 TTAGATTCTGCTGCGTGGCA 60.036 50.000 0.00 4.59 40.15 4.92
415 416 2.924432 CGGAATCCGTCGATAAAAGC 57.076 50.000 14.46 0.00 42.73 3.51
416 417 1.525619 CGGAATCCGTCGATAAAAGCC 59.474 52.381 14.46 0.00 42.73 4.35
417 418 1.525619 GGAATCCGTCGATAAAAGCCG 59.474 52.381 0.00 0.00 0.00 5.52
418 419 2.466846 GAATCCGTCGATAAAAGCCGA 58.533 47.619 0.00 0.00 0.00 5.54
419 420 2.589798 ATCCGTCGATAAAAGCCGAA 57.410 45.000 0.00 0.00 36.50 4.30
420 421 1.632422 TCCGTCGATAAAAGCCGAAC 58.368 50.000 0.00 0.00 36.50 3.95
421 422 0.648958 CCGTCGATAAAAGCCGAACC 59.351 55.000 0.00 0.00 36.50 3.62
422 423 1.352114 CGTCGATAAAAGCCGAACCA 58.648 50.000 0.00 0.00 36.50 3.67
423 424 1.727880 CGTCGATAAAAGCCGAACCAA 59.272 47.619 0.00 0.00 36.50 3.67
424 425 2.158058 CGTCGATAAAAGCCGAACCAAA 59.842 45.455 0.00 0.00 36.50 3.28
425 426 3.485633 GTCGATAAAAGCCGAACCAAAC 58.514 45.455 0.00 0.00 36.50 2.93
426 427 3.058777 GTCGATAAAAGCCGAACCAAACA 60.059 43.478 0.00 0.00 36.50 2.83
427 428 3.564644 TCGATAAAAGCCGAACCAAACAA 59.435 39.130 0.00 0.00 0.00 2.83
428 429 3.911964 CGATAAAAGCCGAACCAAACAAG 59.088 43.478 0.00 0.00 0.00 3.16
429 430 2.595124 AAAAGCCGAACCAAACAAGG 57.405 45.000 0.00 0.00 0.00 3.61
431 432 2.338620 GCCGAACCAAACAAGGCC 59.661 61.111 0.00 0.00 41.81 5.19
432 433 2.494530 GCCGAACCAAACAAGGCCA 61.495 57.895 5.01 0.00 41.81 5.36
447 448 4.188462 CAAGGCCATAGTGTCATACGAAA 58.812 43.478 5.01 0.00 0.00 3.46
454 455 3.402628 AGTGTCATACGAAAGCCACTT 57.597 42.857 0.00 0.00 29.32 3.16
497 498 1.149148 GTTCAACTCGGAGAAGGCAC 58.851 55.000 12.86 0.00 34.09 5.01
498 499 0.319555 TTCAACTCGGAGAAGGCACG 60.320 55.000 12.86 0.00 34.09 5.34
499 500 2.048127 AACTCGGAGAAGGCACGC 60.048 61.111 12.86 0.00 34.09 5.34
500 501 3.591254 AACTCGGAGAAGGCACGCC 62.591 63.158 12.86 0.00 34.09 5.68
517 518 4.012554 CGCACGCGGAAGTCATAT 57.987 55.556 12.47 0.00 35.56 1.78
525 526 2.767505 GCGGAAGTCATATCCCGATTT 58.232 47.619 0.00 0.00 44.29 2.17
567 568 9.941325 TTTGAATTGTAAGTATAGTTCCGGTTA 57.059 29.630 0.00 0.00 0.00 2.85
577 578 1.776063 AGTTCCGGTTAGTTTTCCCCA 59.224 47.619 0.00 0.00 0.00 4.96
590 591 3.618690 TTTCCCCACACAACAAAAAGG 57.381 42.857 0.00 0.00 0.00 3.11
594 595 2.499693 CCCCACACAACAAAAAGGTCTT 59.500 45.455 0.00 0.00 0.00 3.01
595 596 3.520569 CCCACACAACAAAAAGGTCTTG 58.479 45.455 0.00 0.00 0.00 3.02
596 597 3.056179 CCCACACAACAAAAAGGTCTTGT 60.056 43.478 0.00 0.00 38.65 3.16
653 654 5.659463 TAAACTGGTTTGGCATAATGATGC 58.341 37.500 6.47 6.47 43.96 3.91
654 655 5.678361 TAAACTGGTTTGGCATAATGATGCG 60.678 40.000 9.01 0.00 44.69 4.73
698 699 5.011023 GCCATAATGGAATTTGTAGGAAGGG 59.989 44.000 0.00 0.00 40.96 3.95
888 921 5.600696 CAAAAATATCTCCCAAATTCCCCG 58.399 41.667 0.00 0.00 0.00 5.73
891 924 1.295020 ATCTCCCAAATTCCCCGACA 58.705 50.000 0.00 0.00 0.00 4.35
893 926 0.037590 CTCCCAAATTCCCCGACACA 59.962 55.000 0.00 0.00 0.00 3.72
925 958 1.284785 CAACCCTAATCAGCTTCCCCA 59.715 52.381 0.00 0.00 0.00 4.96
1215 1275 0.874607 GAACGAATCGCACGGGCTAT 60.875 55.000 8.62 0.00 38.10 2.97
1532 1602 5.715070 AGTAGTTGGTCTCAAAGAATCTCG 58.285 41.667 0.00 0.00 34.28 4.04
1546 1616 4.290942 AGAATCTCGTAGTTTCCCTGGAT 58.709 43.478 0.00 0.00 0.00 3.41
1559 1629 4.665833 TCCCTGGATGTTGTATTAGTCG 57.334 45.455 0.00 0.00 0.00 4.18
1561 1631 4.899457 TCCCTGGATGTTGTATTAGTCGAT 59.101 41.667 0.00 0.00 0.00 3.59
1595 1665 1.644509 TGGCACAGACTCAGTACCAT 58.355 50.000 0.00 0.00 27.58 3.55
1638 1708 0.951558 AGCCTCGCGTTGTTGAATTT 59.048 45.000 5.77 0.00 0.00 1.82
1639 1709 1.336755 AGCCTCGCGTTGTTGAATTTT 59.663 42.857 5.77 0.00 0.00 1.82
1640 1710 1.713932 GCCTCGCGTTGTTGAATTTTC 59.286 47.619 5.77 0.00 0.00 2.29
1641 1711 2.604614 GCCTCGCGTTGTTGAATTTTCT 60.605 45.455 5.77 0.00 0.00 2.52
1642 1712 3.628017 CCTCGCGTTGTTGAATTTTCTT 58.372 40.909 5.77 0.00 0.00 2.52
1643 1713 4.778904 CCTCGCGTTGTTGAATTTTCTTA 58.221 39.130 5.77 0.00 0.00 2.10
1644 1714 4.846137 CCTCGCGTTGTTGAATTTTCTTAG 59.154 41.667 5.77 0.00 0.00 2.18
1645 1715 4.215965 TCGCGTTGTTGAATTTTCTTAGC 58.784 39.130 5.77 0.00 0.00 3.09
1646 1716 4.024387 TCGCGTTGTTGAATTTTCTTAGCT 60.024 37.500 5.77 0.00 0.00 3.32
1647 1717 4.087085 CGCGTTGTTGAATTTTCTTAGCTG 59.913 41.667 0.00 0.00 0.00 4.24
1648 1718 4.976116 GCGTTGTTGAATTTTCTTAGCTGT 59.024 37.500 0.00 0.00 0.00 4.40
1649 1719 5.458779 GCGTTGTTGAATTTTCTTAGCTGTT 59.541 36.000 0.00 0.00 0.00 3.16
1650 1720 6.019881 GCGTTGTTGAATTTTCTTAGCTGTTT 60.020 34.615 0.00 0.00 0.00 2.83
1651 1721 7.464045 GCGTTGTTGAATTTTCTTAGCTGTTTT 60.464 33.333 0.00 0.00 0.00 2.43
1652 1722 8.379902 CGTTGTTGAATTTTCTTAGCTGTTTTT 58.620 29.630 0.00 0.00 0.00 1.94
1683 1753 7.869800 AGAATTTCTTAGCTTGTTTCTGTGAG 58.130 34.615 0.00 0.00 0.00 3.51
1704 1774 9.085645 TGTGAGTAGGACTTTAGTTCTCAATTA 57.914 33.333 0.00 0.00 35.11 1.40
1778 1848 1.431496 ATGTTTTCAATTGCGCTGCC 58.569 45.000 9.73 0.00 0.00 4.85
1795 1865 3.550233 GCTGCCGTAGTCTCGATTTGATA 60.550 47.826 0.00 0.00 0.00 2.15
1796 1866 4.799678 CTGCCGTAGTCTCGATTTGATAT 58.200 43.478 0.00 0.00 0.00 1.63
1847 1922 7.744087 TGCATACTTCATAAGTTGACAAAGT 57.256 32.000 0.00 0.00 42.81 2.66
1855 1930 5.588246 TCATAAGTTGACAAAGTTGCTCACA 59.412 36.000 0.00 0.00 31.32 3.58
1867 1946 6.899393 AAGTTGCTCACATGGAATCTTTTA 57.101 33.333 0.00 0.00 0.00 1.52
1894 1979 9.823647 CTTGTTATGGTCTCTCAGTTTGTATAT 57.176 33.333 0.00 0.00 0.00 0.86
1952 2038 5.175673 GCTTTTTGCAGTTTCCTGTTCATAC 59.824 40.000 0.00 0.00 41.02 2.39
1955 2041 1.130561 GCAGTTTCCTGTTCATACGGC 59.869 52.381 0.00 0.00 41.02 5.68
1957 2043 3.009723 CAGTTTCCTGTTCATACGGCAT 58.990 45.455 0.00 0.00 33.80 4.40
2073 2160 3.301274 AGGTCTAAGGTACTGATCCAGC 58.699 50.000 0.00 0.00 40.86 4.85
2120 2214 3.753272 GTGTGTTCTGTGTGATGCCTAAT 59.247 43.478 0.00 0.00 0.00 1.73
2122 2216 5.586243 GTGTGTTCTGTGTGATGCCTAATAT 59.414 40.000 0.00 0.00 0.00 1.28
2270 2364 1.261238 ACACTCCTACTGCTCCAGCC 61.261 60.000 0.00 0.00 41.18 4.85
2339 2433 4.036734 AGGTATGTTAGATTTGGCGCATTG 59.963 41.667 10.83 0.00 0.00 2.82
2356 2450 4.501559 CGCATTGCTTATTTGTGGATTCAG 59.498 41.667 7.12 0.00 0.00 3.02
2394 2488 4.768968 AGTATCTGAATTTGCCTGTTTGCT 59.231 37.500 0.00 0.00 0.00 3.91
2402 2496 4.935352 TTTGCCTGTTTGCTAGAATTGT 57.065 36.364 0.00 0.00 0.00 2.71
2422 2516 9.683069 GAATTGTTCATAAAGTCTTGTGTGATT 57.317 29.630 0.00 0.00 0.00 2.57
2534 2629 6.043243 AGGAGACATTATATAACAGTGGGTGG 59.957 42.308 7.03 0.00 0.00 4.61
2552 2647 3.361158 TCGCCGTGTTGCAATGGG 61.361 61.111 0.59 5.69 0.00 4.00
2597 2692 5.990668 AGTTTGTAGGGGTATTAGCAGAAG 58.009 41.667 0.00 0.00 0.00 2.85
2672 2767 9.152595 GCTGGTTAGGTTATCTAGCATATTAAC 57.847 37.037 0.00 0.00 36.10 2.01
2680 2775 9.726438 GGTTATCTAGCATATTAACCATGTTCT 57.274 33.333 11.55 0.00 37.48 3.01
2740 2835 4.504097 CCTTTTGTTGCTTTGTCTGTTAGC 59.496 41.667 0.00 0.00 35.50 3.09
2742 2837 3.969117 TGTTGCTTTGTCTGTTAGCAG 57.031 42.857 0.00 0.00 44.80 4.24
3007 3102 2.927553 AAATCGACATCTTTGCAGCC 57.072 45.000 0.00 0.00 0.00 4.85
3158 3254 8.631480 TGTGTCTACATAGAACTAGAGTTGAA 57.369 34.615 0.00 0.00 38.56 2.69
3166 3262 8.643324 ACATAGAACTAGAGTTGAATGGATACC 58.357 37.037 0.00 0.00 38.56 2.73
3167 3263 6.150396 AGAACTAGAGTTGAATGGATACCG 57.850 41.667 0.00 0.00 38.56 4.02
3168 3264 4.939052 ACTAGAGTTGAATGGATACCGG 57.061 45.455 0.00 0.00 0.00 5.28
3169 3265 4.287552 ACTAGAGTTGAATGGATACCGGT 58.712 43.478 13.98 13.98 0.00 5.28
3170 3266 3.821421 AGAGTTGAATGGATACCGGTC 57.179 47.619 12.40 0.00 0.00 4.79
3171 3267 3.104512 AGAGTTGAATGGATACCGGTCA 58.895 45.455 12.40 2.79 0.00 4.02
3318 3414 1.228398 TCACATTCCTTTGCCGCCA 60.228 52.632 0.00 0.00 0.00 5.69
3499 3595 9.338622 AGTTAGTTGGTATACTTTATTCATGGC 57.661 33.333 2.25 0.00 0.00 4.40
3547 3643 3.619979 GCAGGTGGTTGCTACTCTTATGT 60.620 47.826 0.00 0.00 40.89 2.29
3548 3644 4.579869 CAGGTGGTTGCTACTCTTATGTT 58.420 43.478 0.00 0.00 0.00 2.71
3549 3645 5.730550 CAGGTGGTTGCTACTCTTATGTTA 58.269 41.667 0.00 0.00 0.00 2.41
3602 3698 2.028294 CCATAGCAAAACCACATGCCAA 60.028 45.455 0.00 0.00 43.57 4.52
3610 3706 0.250901 ACCACATGCCAACTGGAGAC 60.251 55.000 6.31 0.00 37.39 3.36
3611 3707 1.300971 CCACATGCCAACTGGAGACG 61.301 60.000 0.00 0.00 37.39 4.18
3629 3725 2.737252 GACGTTGTGTGATCTTCCTTCC 59.263 50.000 0.00 0.00 0.00 3.46
3639 3735 0.772124 TCTTCCTTCCCCAGGTGCTT 60.772 55.000 0.00 0.00 44.37 3.91
3648 3744 2.712087 TCCCCAGGTGCTTAACAAGTTA 59.288 45.455 0.00 0.00 0.00 2.24
3689 3785 4.549458 GCTTTGCTAATTGTGCTTCTTCA 58.451 39.130 6.78 0.00 0.00 3.02
3693 3789 7.008992 GCTTTGCTAATTGTGCTTCTTCATAAG 59.991 37.037 6.78 0.00 0.00 1.73
3752 3848 3.736224 ACATGCCAGCTGGAGGGG 61.736 66.667 37.21 22.46 37.39 4.79
3801 3897 2.372172 TCTTCCTTCTTCAGGGGTCAAC 59.628 50.000 0.00 0.00 44.12 3.18
3888 4035 3.829948 CAAATCTTGCTTTGCGATCTGT 58.170 40.909 0.00 0.00 30.06 3.41
3905 4052 5.390567 CGATCTGTTAACAGTTAAGGGTTGC 60.391 44.000 29.83 10.43 44.12 4.17
3932 4079 2.545742 GGTTTGGTGGTGCACAGATTTC 60.546 50.000 20.43 0.00 35.86 2.17
3939 4086 1.133025 GGTGCACAGATTTCCCATTCG 59.867 52.381 20.43 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.612212 GTTCGTTGGTCACATGTGTCTT 59.388 45.455 24.63 0.00 0.00 3.01
1 2 2.210116 GTTCGTTGGTCACATGTGTCT 58.790 47.619 24.63 0.00 0.00 3.41
2 3 1.937223 TGTTCGTTGGTCACATGTGTC 59.063 47.619 24.63 19.14 0.00 3.67
3 4 2.031258 TGTTCGTTGGTCACATGTGT 57.969 45.000 24.63 0.00 0.00 3.72
4 5 3.993736 TCTATGTTCGTTGGTCACATGTG 59.006 43.478 20.18 20.18 33.19 3.21
5 6 3.994392 GTCTATGTTCGTTGGTCACATGT 59.006 43.478 0.00 0.00 33.19 3.21
6 7 3.993736 TGTCTATGTTCGTTGGTCACATG 59.006 43.478 0.00 0.00 33.19 3.21
7 8 4.265904 TGTCTATGTTCGTTGGTCACAT 57.734 40.909 0.00 0.00 35.33 3.21
8 9 3.737032 TGTCTATGTTCGTTGGTCACA 57.263 42.857 0.00 0.00 0.00 3.58
9 10 5.178623 TCATTTGTCTATGTTCGTTGGTCAC 59.821 40.000 0.00 0.00 0.00 3.67
10 11 5.301555 TCATTTGTCTATGTTCGTTGGTCA 58.698 37.500 0.00 0.00 0.00 4.02
11 12 5.163854 CCTCATTTGTCTATGTTCGTTGGTC 60.164 44.000 0.00 0.00 0.00 4.02
12 13 4.695455 CCTCATTTGTCTATGTTCGTTGGT 59.305 41.667 0.00 0.00 0.00 3.67
13 14 4.935205 TCCTCATTTGTCTATGTTCGTTGG 59.065 41.667 0.00 0.00 0.00 3.77
14 15 5.639506 ACTCCTCATTTGTCTATGTTCGTTG 59.360 40.000 0.00 0.00 0.00 4.10
15 16 5.639506 CACTCCTCATTTGTCTATGTTCGTT 59.360 40.000 0.00 0.00 0.00 3.85
16 17 5.171476 CACTCCTCATTTGTCTATGTTCGT 58.829 41.667 0.00 0.00 0.00 3.85
17 18 4.568359 CCACTCCTCATTTGTCTATGTTCG 59.432 45.833 0.00 0.00 0.00 3.95
18 19 4.878397 CCCACTCCTCATTTGTCTATGTTC 59.122 45.833 0.00 0.00 0.00 3.18
19 20 4.536090 TCCCACTCCTCATTTGTCTATGTT 59.464 41.667 0.00 0.00 0.00 2.71
20 21 4.104086 TCCCACTCCTCATTTGTCTATGT 58.896 43.478 0.00 0.00 0.00 2.29
21 22 4.444022 CCTCCCACTCCTCATTTGTCTATG 60.444 50.000 0.00 0.00 0.00 2.23
22 23 3.713764 CCTCCCACTCCTCATTTGTCTAT 59.286 47.826 0.00 0.00 0.00 1.98
23 24 3.107601 CCTCCCACTCCTCATTTGTCTA 58.892 50.000 0.00 0.00 0.00 2.59
24 25 1.912043 CCTCCCACTCCTCATTTGTCT 59.088 52.381 0.00 0.00 0.00 3.41
25 26 1.680249 GCCTCCCACTCCTCATTTGTC 60.680 57.143 0.00 0.00 0.00 3.18
26 27 0.329596 GCCTCCCACTCCTCATTTGT 59.670 55.000 0.00 0.00 0.00 2.83
27 28 0.394899 GGCCTCCCACTCCTCATTTG 60.395 60.000 0.00 0.00 0.00 2.32
28 29 1.915078 CGGCCTCCCACTCCTCATTT 61.915 60.000 0.00 0.00 0.00 2.32
29 30 2.370445 CGGCCTCCCACTCCTCATT 61.370 63.158 0.00 0.00 0.00 2.57
30 31 2.765807 CGGCCTCCCACTCCTCAT 60.766 66.667 0.00 0.00 0.00 2.90
31 32 3.846405 AACGGCCTCCCACTCCTCA 62.846 63.158 0.00 0.00 0.00 3.86
32 33 3.003763 AACGGCCTCCCACTCCTC 61.004 66.667 0.00 0.00 0.00 3.71
33 34 3.322466 CAACGGCCTCCCACTCCT 61.322 66.667 0.00 0.00 0.00 3.69
34 35 3.637273 ACAACGGCCTCCCACTCC 61.637 66.667 0.00 0.00 0.00 3.85
35 36 2.358737 CACAACGGCCTCCCACTC 60.359 66.667 0.00 0.00 0.00 3.51
36 37 3.168528 ACACAACGGCCTCCCACT 61.169 61.111 0.00 0.00 0.00 4.00
37 38 2.978010 CACACAACGGCCTCCCAC 60.978 66.667 0.00 0.00 0.00 4.61
38 39 3.484806 ACACACAACGGCCTCCCA 61.485 61.111 0.00 0.00 0.00 4.37
39 40 2.978010 CACACACAACGGCCTCCC 60.978 66.667 0.00 0.00 0.00 4.30
40 41 2.978010 CCACACACAACGGCCTCC 60.978 66.667 0.00 0.00 0.00 4.30
41 42 2.110213 TCCACACACAACGGCCTC 59.890 61.111 0.00 0.00 0.00 4.70
42 43 2.203153 GTCCACACACAACGGCCT 60.203 61.111 0.00 0.00 0.00 5.19
43 44 3.645975 CGTCCACACACAACGGCC 61.646 66.667 0.00 0.00 32.96 6.13
44 45 4.307908 GCGTCCACACACAACGGC 62.308 66.667 0.00 0.00 36.92 5.68
45 46 1.282248 CTAGCGTCCACACACAACGG 61.282 60.000 0.00 0.00 36.92 4.44
46 47 1.886861 GCTAGCGTCCACACACAACG 61.887 60.000 0.00 0.00 39.33 4.10
47 48 1.860078 GCTAGCGTCCACACACAAC 59.140 57.895 0.00 0.00 0.00 3.32
48 49 1.663388 CGCTAGCGTCCACACACAA 60.663 57.895 28.66 0.00 34.35 3.33
49 50 2.049526 CGCTAGCGTCCACACACA 60.050 61.111 28.66 0.00 34.35 3.72
50 51 3.479269 GCGCTAGCGTCCACACAC 61.479 66.667 35.21 14.59 42.09 3.82
51 52 4.735132 GGCGCTAGCGTCCACACA 62.735 66.667 35.21 0.00 46.35 3.72
57 58 2.196382 TATCGATGGGCGCTAGCGTC 62.196 60.000 35.21 34.04 46.35 5.19
58 59 1.595993 ATATCGATGGGCGCTAGCGT 61.596 55.000 35.21 18.19 46.35 5.07
59 60 0.380733 TATATCGATGGGCGCTAGCG 59.619 55.000 32.22 32.22 46.35 4.26
60 61 2.802787 ATATATCGATGGGCGCTAGC 57.197 50.000 8.54 4.06 44.18 3.42
61 62 4.738124 CCATATATATCGATGGGCGCTAG 58.262 47.826 8.54 0.00 39.23 3.42
62 63 4.783764 CCATATATATCGATGGGCGCTA 57.216 45.455 8.54 0.00 39.23 4.26
63 64 3.667497 CCATATATATCGATGGGCGCT 57.333 47.619 8.54 0.00 39.23 5.92
71 72 9.244292 GGACTAATATGAGCCCATATATATCGA 57.756 37.037 0.61 0.00 43.27 3.59
72 73 9.025041 TGGACTAATATGAGCCCATATATATCG 57.975 37.037 0.61 0.00 43.27 2.92
76 77 7.941238 GCATTGGACTAATATGAGCCCATATAT 59.059 37.037 0.61 0.00 43.27 0.86
77 78 7.282585 GCATTGGACTAATATGAGCCCATATA 58.717 38.462 0.61 0.00 43.27 0.86
78 79 6.125029 GCATTGGACTAATATGAGCCCATAT 58.875 40.000 0.00 0.00 45.32 1.78
79 80 5.500234 GCATTGGACTAATATGAGCCCATA 58.500 41.667 0.00 0.00 39.38 2.74
80 81 4.338879 GCATTGGACTAATATGAGCCCAT 58.661 43.478 0.00 0.00 36.81 4.00
81 82 3.754965 GCATTGGACTAATATGAGCCCA 58.245 45.455 0.00 0.00 0.00 5.36
82 83 2.744202 CGCATTGGACTAATATGAGCCC 59.256 50.000 0.00 0.00 0.00 5.19
83 84 2.744202 CCGCATTGGACTAATATGAGCC 59.256 50.000 0.00 0.00 42.00 4.70
84 85 3.403038 ACCGCATTGGACTAATATGAGC 58.597 45.455 0.00 0.00 42.00 4.26
85 86 4.816385 ACAACCGCATTGGACTAATATGAG 59.184 41.667 3.00 0.00 43.20 2.90
86 87 4.776349 ACAACCGCATTGGACTAATATGA 58.224 39.130 3.00 0.00 43.20 2.15
87 88 6.612247 TTACAACCGCATTGGACTAATATG 57.388 37.500 3.00 0.00 43.20 1.78
88 89 7.255451 CCATTTACAACCGCATTGGACTAATAT 60.255 37.037 3.00 0.00 43.20 1.28
89 90 6.038825 CCATTTACAACCGCATTGGACTAATA 59.961 38.462 3.00 0.00 43.20 0.98
90 91 5.163561 CCATTTACAACCGCATTGGACTAAT 60.164 40.000 3.00 0.00 43.20 1.73
91 92 4.156922 CCATTTACAACCGCATTGGACTAA 59.843 41.667 3.00 0.00 43.20 2.24
92 93 3.692101 CCATTTACAACCGCATTGGACTA 59.308 43.478 3.00 0.00 43.20 2.59
93 94 2.491693 CCATTTACAACCGCATTGGACT 59.508 45.455 3.00 0.00 43.20 3.85
94 95 2.230266 ACCATTTACAACCGCATTGGAC 59.770 45.455 3.00 0.00 43.20 4.02
95 96 2.490115 GACCATTTACAACCGCATTGGA 59.510 45.455 3.00 0.00 43.20 3.53
96 97 2.491693 AGACCATTTACAACCGCATTGG 59.508 45.455 3.00 0.00 43.20 3.16
97 98 3.848272 AGACCATTTACAACCGCATTG 57.152 42.857 0.00 0.00 44.60 2.82
98 99 4.394920 CACTAGACCATTTACAACCGCATT 59.605 41.667 0.00 0.00 0.00 3.56
99 100 3.938963 CACTAGACCATTTACAACCGCAT 59.061 43.478 0.00 0.00 0.00 4.73
100 101 3.244284 ACACTAGACCATTTACAACCGCA 60.244 43.478 0.00 0.00 0.00 5.69
101 102 3.332034 ACACTAGACCATTTACAACCGC 58.668 45.455 0.00 0.00 0.00 5.68
102 103 4.562082 TGACACTAGACCATTTACAACCG 58.438 43.478 0.00 0.00 0.00 4.44
103 104 6.761714 CCTATGACACTAGACCATTTACAACC 59.238 42.308 0.00 0.00 0.00 3.77
104 105 6.258068 GCCTATGACACTAGACCATTTACAAC 59.742 42.308 0.00 0.00 0.00 3.32
105 106 6.346096 GCCTATGACACTAGACCATTTACAA 58.654 40.000 0.00 0.00 0.00 2.41
106 107 5.163343 GGCCTATGACACTAGACCATTTACA 60.163 44.000 0.00 0.00 0.00 2.41
107 108 5.298347 GGCCTATGACACTAGACCATTTAC 58.702 45.833 0.00 0.00 0.00 2.01
108 109 4.347000 GGGCCTATGACACTAGACCATTTA 59.653 45.833 0.84 0.00 0.00 1.40
109 110 3.136626 GGGCCTATGACACTAGACCATTT 59.863 47.826 0.84 0.00 0.00 2.32
110 111 2.706190 GGGCCTATGACACTAGACCATT 59.294 50.000 0.84 0.00 0.00 3.16
111 112 2.090494 AGGGCCTATGACACTAGACCAT 60.090 50.000 2.82 0.00 0.00 3.55
112 113 1.291033 AGGGCCTATGACACTAGACCA 59.709 52.381 2.82 0.00 0.00 4.02
113 114 1.689273 CAGGGCCTATGACACTAGACC 59.311 57.143 5.28 0.00 0.00 3.85
114 115 2.389715 ACAGGGCCTATGACACTAGAC 58.610 52.381 5.28 0.00 0.00 2.59
115 116 2.848678 ACAGGGCCTATGACACTAGA 57.151 50.000 5.28 0.00 0.00 2.43
116 117 3.535561 CAAACAGGGCCTATGACACTAG 58.464 50.000 5.28 0.00 0.00 2.57
117 118 2.238646 CCAAACAGGGCCTATGACACTA 59.761 50.000 5.28 0.00 0.00 2.74
118 119 1.004745 CCAAACAGGGCCTATGACACT 59.995 52.381 5.28 0.00 0.00 3.55
119 120 1.271926 ACCAAACAGGGCCTATGACAC 60.272 52.381 5.28 0.00 43.89 3.67
120 121 1.072266 ACCAAACAGGGCCTATGACA 58.928 50.000 5.28 0.00 43.89 3.58
121 122 2.092323 GAACCAAACAGGGCCTATGAC 58.908 52.381 5.28 0.00 43.89 3.06
122 123 1.339631 CGAACCAAACAGGGCCTATGA 60.340 52.381 5.28 0.00 43.89 2.15
123 124 1.094785 CGAACCAAACAGGGCCTATG 58.905 55.000 5.28 5.91 43.89 2.23
124 125 0.034477 CCGAACCAAACAGGGCCTAT 60.034 55.000 5.28 0.00 43.89 2.57
125 126 1.377229 CCGAACCAAACAGGGCCTA 59.623 57.895 5.28 0.00 43.89 3.93
126 127 2.115266 CCGAACCAAACAGGGCCT 59.885 61.111 0.00 0.00 43.89 5.19
127 128 3.680786 GCCGAACCAAACAGGGCC 61.681 66.667 0.00 0.00 43.89 5.80
128 129 2.597510 AGCCGAACCAAACAGGGC 60.598 61.111 0.00 0.00 43.89 5.19
129 130 1.528309 ACAGCCGAACCAAACAGGG 60.528 57.895 0.00 0.00 43.89 4.45
130 131 1.654220 CACAGCCGAACCAAACAGG 59.346 57.895 0.00 0.00 45.67 4.00
131 132 0.817634 TCCACAGCCGAACCAAACAG 60.818 55.000 0.00 0.00 0.00 3.16
132 133 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
133 134 0.958822 AATCCACAGCCGAACCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
134 135 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
135 136 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
136 137 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
137 138 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
138 139 4.723248 CTTTTAGAAATCCACAGCCGAAC 58.277 43.478 0.00 0.00 0.00 3.95
139 140 3.190535 GCTTTTAGAAATCCACAGCCGAA 59.809 43.478 0.00 0.00 0.00 4.30
140 141 2.747446 GCTTTTAGAAATCCACAGCCGA 59.253 45.455 0.00 0.00 0.00 5.54
141 142 2.487762 TGCTTTTAGAAATCCACAGCCG 59.512 45.455 0.00 0.00 0.00 5.52
142 143 3.674410 GCTGCTTTTAGAAATCCACAGCC 60.674 47.826 0.00 0.00 42.58 4.85
143 144 3.505836 GCTGCTTTTAGAAATCCACAGC 58.494 45.455 0.00 0.00 42.00 4.40
144 145 4.217118 ACAGCTGCTTTTAGAAATCCACAG 59.783 41.667 15.27 0.00 0.00 3.66
145 146 4.022935 CACAGCTGCTTTTAGAAATCCACA 60.023 41.667 15.27 0.00 0.00 4.17
146 147 4.216257 TCACAGCTGCTTTTAGAAATCCAC 59.784 41.667 15.27 0.00 0.00 4.02
147 148 4.397420 TCACAGCTGCTTTTAGAAATCCA 58.603 39.130 15.27 0.00 0.00 3.41
148 149 5.376854 TTCACAGCTGCTTTTAGAAATCC 57.623 39.130 15.27 0.00 0.00 3.01
149 150 7.698836 TTTTTCACAGCTGCTTTTAGAAATC 57.301 32.000 15.27 0.00 0.00 2.17
150 151 8.146412 AGATTTTTCACAGCTGCTTTTAGAAAT 58.854 29.630 15.27 10.98 0.00 2.17
151 152 7.491682 AGATTTTTCACAGCTGCTTTTAGAAA 58.508 30.769 15.27 11.50 0.00 2.52
152 153 7.042797 AGATTTTTCACAGCTGCTTTTAGAA 57.957 32.000 15.27 5.96 0.00 2.10
153 154 6.639632 AGATTTTTCACAGCTGCTTTTAGA 57.360 33.333 15.27 0.00 0.00 2.10
154 155 7.536622 CAGTAGATTTTTCACAGCTGCTTTTAG 59.463 37.037 15.27 0.00 0.00 1.85
155 156 7.013274 ACAGTAGATTTTTCACAGCTGCTTTTA 59.987 33.333 15.27 0.00 0.00 1.52
156 157 6.183360 ACAGTAGATTTTTCACAGCTGCTTTT 60.183 34.615 15.27 0.00 0.00 2.27
157 158 5.300286 ACAGTAGATTTTTCACAGCTGCTTT 59.700 36.000 15.27 0.00 0.00 3.51
158 159 4.823989 ACAGTAGATTTTTCACAGCTGCTT 59.176 37.500 15.27 0.00 0.00 3.91
159 160 4.392940 ACAGTAGATTTTTCACAGCTGCT 58.607 39.130 15.27 0.00 0.00 4.24
160 161 4.756084 ACAGTAGATTTTTCACAGCTGC 57.244 40.909 15.27 0.00 0.00 5.25
161 162 7.658179 TTCTACAGTAGATTTTTCACAGCTG 57.342 36.000 13.48 13.48 34.22 4.24
162 163 8.677148 TTTTCTACAGTAGATTTTTCACAGCT 57.323 30.769 11.25 0.00 34.22 4.24
163 164 9.170584 GTTTTTCTACAGTAGATTTTTCACAGC 57.829 33.333 11.25 0.00 34.22 4.40
171 172 9.391006 TCACAGTTGTTTTTCTACAGTAGATTT 57.609 29.630 11.25 0.00 34.22 2.17
172 173 8.958119 TCACAGTTGTTTTTCTACAGTAGATT 57.042 30.769 11.25 0.00 34.22 2.40
173 174 8.958119 TTCACAGTTGTTTTTCTACAGTAGAT 57.042 30.769 11.25 0.00 34.22 1.98
174 175 8.780846 TTTCACAGTTGTTTTTCTACAGTAGA 57.219 30.769 6.15 6.15 0.00 2.59
175 176 9.834628 TTTTTCACAGTTGTTTTTCTACAGTAG 57.165 29.630 0.47 0.47 0.00 2.57
177 178 9.705290 AATTTTTCACAGTTGTTTTTCTACAGT 57.295 25.926 0.00 0.00 0.00 3.55
183 184 9.824534 ACATCAAATTTTTCACAGTTGTTTTTC 57.175 25.926 0.00 0.00 0.00 2.29
184 185 9.609950 CACATCAAATTTTTCACAGTTGTTTTT 57.390 25.926 0.00 0.00 0.00 1.94
185 186 8.997323 TCACATCAAATTTTTCACAGTTGTTTT 58.003 25.926 0.00 0.00 0.00 2.43
186 187 8.545229 TCACATCAAATTTTTCACAGTTGTTT 57.455 26.923 0.00 0.00 0.00 2.83
187 188 8.545229 TTCACATCAAATTTTTCACAGTTGTT 57.455 26.923 0.00 0.00 0.00 2.83
188 189 8.545229 TTTCACATCAAATTTTTCACAGTTGT 57.455 26.923 0.00 0.00 0.00 3.32
189 190 9.823098 TTTTTCACATCAAATTTTTCACAGTTG 57.177 25.926 0.00 0.00 0.00 3.16
191 192 9.434420 TCTTTTTCACATCAAATTTTTCACAGT 57.566 25.926 0.00 0.00 0.00 3.55
199 200 9.696917 GACCTACATCTTTTTCACATCAAATTT 57.303 29.630 0.00 0.00 0.00 1.82
200 201 8.859090 TGACCTACATCTTTTTCACATCAAATT 58.141 29.630 0.00 0.00 0.00 1.82
201 202 8.408043 TGACCTACATCTTTTTCACATCAAAT 57.592 30.769 0.00 0.00 0.00 2.32
202 203 7.815840 TGACCTACATCTTTTTCACATCAAA 57.184 32.000 0.00 0.00 0.00 2.69
203 204 8.408043 AATGACCTACATCTTTTTCACATCAA 57.592 30.769 0.00 0.00 38.38 2.57
204 205 8.298854 CAAATGACCTACATCTTTTTCACATCA 58.701 33.333 0.00 0.00 38.38 3.07
205 206 7.756722 CCAAATGACCTACATCTTTTTCACATC 59.243 37.037 0.00 0.00 38.38 3.06
206 207 7.605449 CCAAATGACCTACATCTTTTTCACAT 58.395 34.615 0.00 0.00 38.38 3.21
207 208 6.516527 GCCAAATGACCTACATCTTTTTCACA 60.517 38.462 0.00 0.00 38.38 3.58
208 209 5.863935 GCCAAATGACCTACATCTTTTTCAC 59.136 40.000 0.00 0.00 38.38 3.18
209 210 5.538053 TGCCAAATGACCTACATCTTTTTCA 59.462 36.000 0.00 0.00 38.38 2.69
210 211 6.024552 TGCCAAATGACCTACATCTTTTTC 57.975 37.500 0.00 0.00 38.38 2.29
211 212 6.223120 GTTGCCAAATGACCTACATCTTTTT 58.777 36.000 0.00 0.00 38.38 1.94
212 213 5.279456 GGTTGCCAAATGACCTACATCTTTT 60.279 40.000 0.00 0.00 38.38 2.27
213 214 4.220602 GGTTGCCAAATGACCTACATCTTT 59.779 41.667 0.00 0.00 38.38 2.52
214 215 3.763897 GGTTGCCAAATGACCTACATCTT 59.236 43.478 0.00 0.00 38.38 2.40
215 216 3.356290 GGTTGCCAAATGACCTACATCT 58.644 45.455 0.00 0.00 38.38 2.90
216 217 2.427095 GGGTTGCCAAATGACCTACATC 59.573 50.000 0.00 0.00 38.38 3.06
217 218 2.225242 TGGGTTGCCAAATGACCTACAT 60.225 45.455 0.00 0.00 41.45 2.29
218 219 1.145945 TGGGTTGCCAAATGACCTACA 59.854 47.619 0.00 0.00 33.90 2.74
219 220 1.818674 CTGGGTTGCCAAATGACCTAC 59.181 52.381 0.00 0.00 33.90 3.18
220 221 1.890573 GCTGGGTTGCCAAATGACCTA 60.891 52.381 0.00 0.00 33.90 3.08
221 222 1.187567 GCTGGGTTGCCAAATGACCT 61.188 55.000 0.00 0.00 33.90 3.85
222 223 1.187567 AGCTGGGTTGCCAAATGACC 61.188 55.000 0.00 0.00 0.00 4.02
223 224 0.037975 CAGCTGGGTTGCCAAATGAC 60.038 55.000 5.57 0.00 0.00 3.06
224 225 0.178967 TCAGCTGGGTTGCCAAATGA 60.179 50.000 15.13 0.00 0.00 2.57
225 226 0.899720 ATCAGCTGGGTTGCCAAATG 59.100 50.000 15.13 0.00 0.00 2.32
226 227 2.102578 GTATCAGCTGGGTTGCCAAAT 58.897 47.619 15.13 0.00 0.00 2.32
227 228 1.202989 TGTATCAGCTGGGTTGCCAAA 60.203 47.619 15.13 0.00 0.00 3.28
228 229 0.403655 TGTATCAGCTGGGTTGCCAA 59.596 50.000 15.13 0.00 0.00 4.52
229 230 0.035152 CTGTATCAGCTGGGTTGCCA 60.035 55.000 15.13 1.87 0.00 4.92
230 231 2.785868 CTGTATCAGCTGGGTTGCC 58.214 57.895 15.13 0.00 0.00 4.52
251 252 3.394719 GTTGCGGGCCAAAATCTAAAAA 58.605 40.909 4.39 0.00 34.68 1.94
252 253 2.608261 CGTTGCGGGCCAAAATCTAAAA 60.608 45.455 4.39 0.00 34.68 1.52
253 254 1.068194 CGTTGCGGGCCAAAATCTAAA 60.068 47.619 4.39 0.00 34.68 1.85
254 255 0.523966 CGTTGCGGGCCAAAATCTAA 59.476 50.000 4.39 0.00 34.68 2.10
255 256 1.309499 CCGTTGCGGGCCAAAATCTA 61.309 55.000 4.39 0.00 44.15 1.98
256 257 2.635443 CCGTTGCGGGCCAAAATCT 61.635 57.895 4.39 0.00 44.15 2.40
257 258 2.126110 CCGTTGCGGGCCAAAATC 60.126 61.111 4.39 0.00 44.15 2.17
267 268 2.161410 TCCAAAATCTGATTCCGTTGCG 59.839 45.455 2.92 0.84 0.00 4.85
268 269 3.848272 TCCAAAATCTGATTCCGTTGC 57.152 42.857 2.92 0.00 0.00 4.17
269 270 4.622740 GCTTTCCAAAATCTGATTCCGTTG 59.377 41.667 2.92 5.02 0.00 4.10
270 271 4.280677 TGCTTTCCAAAATCTGATTCCGTT 59.719 37.500 2.92 0.00 0.00 4.44
271 272 3.826157 TGCTTTCCAAAATCTGATTCCGT 59.174 39.130 2.92 0.00 0.00 4.69
272 273 4.168760 GTGCTTTCCAAAATCTGATTCCG 58.831 43.478 2.92 0.00 0.00 4.30
273 274 4.168760 CGTGCTTTCCAAAATCTGATTCC 58.831 43.478 2.92 0.00 0.00 3.01
274 275 4.798574 ACGTGCTTTCCAAAATCTGATTC 58.201 39.130 2.92 0.00 0.00 2.52
275 276 4.321230 GGACGTGCTTTCCAAAATCTGATT 60.321 41.667 0.00 0.00 32.82 2.57
276 277 3.191371 GGACGTGCTTTCCAAAATCTGAT 59.809 43.478 0.00 0.00 32.82 2.90
277 278 2.552315 GGACGTGCTTTCCAAAATCTGA 59.448 45.455 0.00 0.00 32.82 3.27
278 279 2.554032 AGGACGTGCTTTCCAAAATCTG 59.446 45.455 2.68 0.00 35.33 2.90
279 280 2.554032 CAGGACGTGCTTTCCAAAATCT 59.446 45.455 6.93 0.00 35.33 2.40
280 281 2.552315 TCAGGACGTGCTTTCCAAAATC 59.448 45.455 6.93 0.00 35.33 2.17
281 282 2.554032 CTCAGGACGTGCTTTCCAAAAT 59.446 45.455 6.93 0.00 35.33 1.82
282 283 1.946768 CTCAGGACGTGCTTTCCAAAA 59.053 47.619 6.93 0.00 35.33 2.44
283 284 1.593196 CTCAGGACGTGCTTTCCAAA 58.407 50.000 6.93 0.00 35.33 3.28
284 285 0.884704 GCTCAGGACGTGCTTTCCAA 60.885 55.000 6.93 0.00 35.33 3.53
285 286 1.301716 GCTCAGGACGTGCTTTCCA 60.302 57.895 6.93 0.00 35.33 3.53
286 287 1.004440 AGCTCAGGACGTGCTTTCC 60.004 57.895 6.93 0.00 41.66 3.13
287 288 1.905922 GCAGCTCAGGACGTGCTTTC 61.906 60.000 6.93 0.00 42.49 2.62
288 289 1.963338 GCAGCTCAGGACGTGCTTT 60.963 57.895 6.93 0.00 42.49 3.51
289 290 2.358003 GCAGCTCAGGACGTGCTT 60.358 61.111 6.93 0.00 42.49 3.91
290 291 3.309506 AGCAGCTCAGGACGTGCT 61.310 61.111 2.68 2.68 45.21 4.40
291 292 2.358003 AAGCAGCTCAGGACGTGC 60.358 61.111 0.00 0.00 36.10 5.34
292 293 1.739562 GGAAGCAGCTCAGGACGTG 60.740 63.158 0.00 0.00 0.00 4.49
293 294 2.210013 TGGAAGCAGCTCAGGACGT 61.210 57.895 0.00 0.00 0.00 4.34
294 295 1.739562 GTGGAAGCAGCTCAGGACG 60.740 63.158 0.00 0.00 0.00 4.79
295 296 0.036022 AAGTGGAAGCAGCTCAGGAC 59.964 55.000 0.00 0.00 0.00 3.85
296 297 0.767375 AAAGTGGAAGCAGCTCAGGA 59.233 50.000 0.00 0.00 0.00 3.86
297 298 1.268899 CAAAAGTGGAAGCAGCTCAGG 59.731 52.381 0.00 0.00 0.00 3.86
298 299 2.701073 CAAAAGTGGAAGCAGCTCAG 57.299 50.000 0.00 0.00 0.00 3.35
310 311 5.232838 GCTGTCAAAATCTGAACCAAAAGTG 59.767 40.000 0.00 0.00 35.22 3.16
311 312 5.351458 GCTGTCAAAATCTGAACCAAAAGT 58.649 37.500 0.00 0.00 35.22 2.66
312 313 4.442073 CGCTGTCAAAATCTGAACCAAAAG 59.558 41.667 0.00 0.00 35.22 2.27
313 314 4.358851 CGCTGTCAAAATCTGAACCAAAA 58.641 39.130 0.00 0.00 35.22 2.44
314 315 3.243367 CCGCTGTCAAAATCTGAACCAAA 60.243 43.478 0.00 0.00 35.22 3.28
315 316 2.293122 CCGCTGTCAAAATCTGAACCAA 59.707 45.455 0.00 0.00 35.22 3.67
316 317 1.879380 CCGCTGTCAAAATCTGAACCA 59.121 47.619 0.00 0.00 35.22 3.67
317 318 2.151202 TCCGCTGTCAAAATCTGAACC 58.849 47.619 0.00 0.00 35.22 3.62
318 319 4.425577 AATCCGCTGTCAAAATCTGAAC 57.574 40.909 0.00 0.00 35.22 3.18
319 320 4.761739 AGAAATCCGCTGTCAAAATCTGAA 59.238 37.500 0.00 0.00 35.22 3.02
320 321 4.154737 CAGAAATCCGCTGTCAAAATCTGA 59.845 41.667 0.00 0.00 35.05 3.27
321 322 4.409570 CAGAAATCCGCTGTCAAAATCTG 58.590 43.478 0.00 0.00 0.00 2.90
322 323 3.441572 CCAGAAATCCGCTGTCAAAATCT 59.558 43.478 0.00 0.00 0.00 2.40
323 324 3.440173 TCCAGAAATCCGCTGTCAAAATC 59.560 43.478 0.00 0.00 0.00 2.17
324 325 3.420893 TCCAGAAATCCGCTGTCAAAAT 58.579 40.909 0.00 0.00 0.00 1.82
325 326 2.857483 TCCAGAAATCCGCTGTCAAAA 58.143 42.857 0.00 0.00 0.00 2.44
326 327 2.559698 TCCAGAAATCCGCTGTCAAA 57.440 45.000 0.00 0.00 0.00 2.69
327 328 2.559698 TTCCAGAAATCCGCTGTCAA 57.440 45.000 0.00 0.00 0.00 3.18
328 329 2.027285 TGATTCCAGAAATCCGCTGTCA 60.027 45.455 0.00 0.00 42.74 3.58
329 330 2.611292 CTGATTCCAGAAATCCGCTGTC 59.389 50.000 0.00 0.00 42.74 3.51
330 331 2.237143 TCTGATTCCAGAAATCCGCTGT 59.763 45.455 0.00 0.00 45.74 4.40
331 332 2.910199 TCTGATTCCAGAAATCCGCTG 58.090 47.619 0.00 0.00 45.74 5.18
341 342 2.092538 ACCCAGCAGAATCTGATTCCAG 60.093 50.000 23.12 17.76 40.13 3.86
342 343 1.918262 ACCCAGCAGAATCTGATTCCA 59.082 47.619 23.12 0.00 40.13 3.53
343 344 2.725221 ACCCAGCAGAATCTGATTCC 57.275 50.000 23.12 11.51 40.13 3.01
344 345 2.611292 CGAACCCAGCAGAATCTGATTC 59.389 50.000 20.14 20.14 39.56 2.52
345 346 2.636830 CGAACCCAGCAGAATCTGATT 58.363 47.619 15.38 1.81 36.19 2.57
346 347 1.745141 GCGAACCCAGCAGAATCTGAT 60.745 52.381 15.38 4.38 36.19 2.90
347 348 0.391661 GCGAACCCAGCAGAATCTGA 60.392 55.000 15.38 0.00 36.19 3.27
348 349 1.372087 GGCGAACCCAGCAGAATCTG 61.372 60.000 5.78 5.78 36.08 2.90
349 350 1.078143 GGCGAACCCAGCAGAATCT 60.078 57.895 0.00 0.00 36.08 2.40
350 351 3.502572 GGCGAACCCAGCAGAATC 58.497 61.111 0.00 0.00 36.08 2.52
360 361 1.900245 TCTAAACCAAAGGGCGAACC 58.100 50.000 0.00 0.00 37.90 3.62
361 362 3.756963 AGAATCTAAACCAAAGGGCGAAC 59.243 43.478 0.00 0.00 37.90 3.95
362 363 3.756434 CAGAATCTAAACCAAAGGGCGAA 59.244 43.478 0.00 0.00 37.90 4.70
363 364 3.343617 CAGAATCTAAACCAAAGGGCGA 58.656 45.455 0.00 0.00 37.90 5.54
364 365 2.159379 GCAGAATCTAAACCAAAGGGCG 60.159 50.000 0.00 0.00 37.90 6.13
365 366 3.092301 AGCAGAATCTAAACCAAAGGGC 58.908 45.455 0.00 0.00 37.90 5.19
366 367 3.119352 GCAGCAGAATCTAAACCAAAGGG 60.119 47.826 0.00 0.00 41.29 3.95
367 368 3.426695 CGCAGCAGAATCTAAACCAAAGG 60.427 47.826 0.00 0.00 0.00 3.11
368 369 3.189287 ACGCAGCAGAATCTAAACCAAAG 59.811 43.478 0.00 0.00 0.00 2.77
369 370 3.058293 CACGCAGCAGAATCTAAACCAAA 60.058 43.478 0.00 0.00 0.00 3.28
370 371 2.483877 CACGCAGCAGAATCTAAACCAA 59.516 45.455 0.00 0.00 0.00 3.67
371 372 2.076100 CACGCAGCAGAATCTAAACCA 58.924 47.619 0.00 0.00 0.00 3.67
372 373 1.398390 CCACGCAGCAGAATCTAAACC 59.602 52.381 0.00 0.00 0.00 3.27
373 374 1.202076 GCCACGCAGCAGAATCTAAAC 60.202 52.381 0.00 0.00 0.00 2.01
374 375 1.086696 GCCACGCAGCAGAATCTAAA 58.913 50.000 0.00 0.00 0.00 1.85
375 376 0.036483 TGCCACGCAGCAGAATCTAA 60.036 50.000 0.00 0.00 38.00 2.10
376 377 1.596408 TGCCACGCAGCAGAATCTA 59.404 52.632 0.00 0.00 38.00 1.98
377 378 2.348620 TGCCACGCAGCAGAATCT 59.651 55.556 0.00 0.00 38.00 2.40
397 398 1.525619 CGGCTTTTATCGACGGATTCC 59.474 52.381 0.00 0.00 34.00 3.01
398 399 2.466846 TCGGCTTTTATCGACGGATTC 58.533 47.619 0.00 0.00 34.00 2.52
399 400 2.589798 TCGGCTTTTATCGACGGATT 57.410 45.000 0.00 0.00 34.00 3.01
400 401 2.199236 GTTCGGCTTTTATCGACGGAT 58.801 47.619 0.00 0.00 34.99 4.18
401 402 1.632422 GTTCGGCTTTTATCGACGGA 58.368 50.000 0.00 0.00 34.99 4.69
402 403 0.648958 GGTTCGGCTTTTATCGACGG 59.351 55.000 0.00 0.00 34.99 4.79
403 404 1.352114 TGGTTCGGCTTTTATCGACG 58.648 50.000 0.00 0.00 34.99 5.12
404 405 3.058777 TGTTTGGTTCGGCTTTTATCGAC 60.059 43.478 0.00 0.00 34.99 4.20
405 406 3.139850 TGTTTGGTTCGGCTTTTATCGA 58.860 40.909 0.00 0.00 0.00 3.59
406 407 3.546002 TGTTTGGTTCGGCTTTTATCG 57.454 42.857 0.00 0.00 0.00 2.92
407 408 4.234574 CCTTGTTTGGTTCGGCTTTTATC 58.765 43.478 0.00 0.00 0.00 1.75
408 409 3.554129 GCCTTGTTTGGTTCGGCTTTTAT 60.554 43.478 0.00 0.00 37.76 1.40
409 410 2.223852 GCCTTGTTTGGTTCGGCTTTTA 60.224 45.455 0.00 0.00 37.76 1.52
410 411 1.472552 GCCTTGTTTGGTTCGGCTTTT 60.473 47.619 0.00 0.00 37.76 2.27
411 412 0.104120 GCCTTGTTTGGTTCGGCTTT 59.896 50.000 0.00 0.00 37.76 3.51
412 413 1.739667 GCCTTGTTTGGTTCGGCTT 59.260 52.632 0.00 0.00 37.76 4.35
413 414 2.200337 GGCCTTGTTTGGTTCGGCT 61.200 57.895 0.00 0.00 40.52 5.52
414 415 1.815817 ATGGCCTTGTTTGGTTCGGC 61.816 55.000 3.32 0.00 39.98 5.54
415 416 1.472480 CTATGGCCTTGTTTGGTTCGG 59.528 52.381 3.32 0.00 0.00 4.30
416 417 2.095263 CACTATGGCCTTGTTTGGTTCG 60.095 50.000 3.32 0.00 0.00 3.95
417 418 2.890945 ACACTATGGCCTTGTTTGGTTC 59.109 45.455 3.32 0.00 0.00 3.62
418 419 2.890945 GACACTATGGCCTTGTTTGGTT 59.109 45.455 3.32 0.00 0.00 3.67
419 420 2.158534 TGACACTATGGCCTTGTTTGGT 60.159 45.455 3.32 0.00 0.00 3.67
420 421 2.513753 TGACACTATGGCCTTGTTTGG 58.486 47.619 3.32 0.00 0.00 3.28
421 422 4.201812 CGTATGACACTATGGCCTTGTTTG 60.202 45.833 3.32 0.00 0.00 2.93
422 423 3.938963 CGTATGACACTATGGCCTTGTTT 59.061 43.478 3.32 0.00 0.00 2.83
423 424 3.196901 TCGTATGACACTATGGCCTTGTT 59.803 43.478 3.32 0.00 0.00 2.83
424 425 2.764010 TCGTATGACACTATGGCCTTGT 59.236 45.455 3.32 1.44 0.00 3.16
425 426 3.452755 TCGTATGACACTATGGCCTTG 57.547 47.619 3.32 0.00 0.00 3.61
426 427 4.442706 CTTTCGTATGACACTATGGCCTT 58.557 43.478 3.32 0.00 0.00 4.35
427 428 3.741388 GCTTTCGTATGACACTATGGCCT 60.741 47.826 3.32 0.00 0.00 5.19
428 429 2.544267 GCTTTCGTATGACACTATGGCC 59.456 50.000 0.00 0.00 0.00 5.36
429 430 2.544267 GGCTTTCGTATGACACTATGGC 59.456 50.000 0.00 0.00 0.00 4.40
430 431 3.555956 GTGGCTTTCGTATGACACTATGG 59.444 47.826 6.66 0.00 39.02 2.74
431 432 4.778842 GTGGCTTTCGTATGACACTATG 57.221 45.455 6.66 0.00 39.02 2.23
454 455 3.918544 GCTTTAGGCGGCCATGAA 58.081 55.556 23.09 9.35 0.00 2.57
500 501 1.548973 GGATATGACTTCCGCGTGCG 61.549 60.000 4.92 7.38 39.44 5.34
501 502 1.222115 GGGATATGACTTCCGCGTGC 61.222 60.000 4.92 0.00 33.82 5.34
502 503 0.939577 CGGGATATGACTTCCGCGTG 60.940 60.000 4.92 0.00 35.95 5.34
503 504 1.105167 TCGGGATATGACTTCCGCGT 61.105 55.000 4.92 0.00 41.98 6.01
504 505 0.243907 ATCGGGATATGACTTCCGCG 59.756 55.000 0.00 0.00 41.98 6.46
512 513 6.935240 AGAACTATCCAAATCGGGATATGA 57.065 37.500 2.61 0.00 46.18 2.15
544 545 9.591792 AACTAACCGGAACTATACTTACAATTC 57.408 33.333 9.46 0.00 0.00 2.17
545 546 9.948964 AAACTAACCGGAACTATACTTACAATT 57.051 29.630 9.46 0.00 0.00 2.32
547 548 9.423061 GAAAACTAACCGGAACTATACTTACAA 57.577 33.333 9.46 0.00 0.00 2.41
549 550 7.492669 GGGAAAACTAACCGGAACTATACTTAC 59.507 40.741 9.46 0.00 0.00 2.34
550 551 7.364673 GGGGAAAACTAACCGGAACTATACTTA 60.365 40.741 9.46 0.00 0.00 2.24
551 552 6.409704 GGGAAAACTAACCGGAACTATACTT 58.590 40.000 9.46 0.00 0.00 2.24
553 554 5.118990 GGGGAAAACTAACCGGAACTATAC 58.881 45.833 9.46 0.00 0.00 1.47
554 555 4.782156 TGGGGAAAACTAACCGGAACTATA 59.218 41.667 9.46 0.00 0.00 1.31
555 556 3.588396 TGGGGAAAACTAACCGGAACTAT 59.412 43.478 9.46 0.00 0.00 2.12
567 568 4.564613 CCTTTTTGTTGTGTGGGGAAAACT 60.565 41.667 0.00 0.00 0.00 2.66
675 676 6.372931 TCCCTTCCTACAAATTCCATTATGG 58.627 40.000 4.57 4.57 39.43 2.74
698 699 1.743252 CCTTGCTGGGCTCGTTCTC 60.743 63.158 0.00 0.00 0.00 2.87
814 832 2.652530 GGAGAACGCGTGGTGGTA 59.347 61.111 14.98 0.00 0.00 3.25
925 958 1.746470 GACGGGGAATCGAATTGGTT 58.254 50.000 0.00 0.00 0.00 3.67
1532 1602 7.336396 ACTAATACAACATCCAGGGAAACTAC 58.664 38.462 0.00 0.00 0.00 2.73
1559 1629 9.364989 GTCTGTGCCAGATCTATAAAATAGATC 57.635 37.037 21.49 21.49 46.28 2.75
1561 1631 8.484214 AGTCTGTGCCAGATCTATAAAATAGA 57.516 34.615 7.95 0.00 42.73 1.98
1595 1665 3.120321 AGCACGACCAAATCACAGTTA 57.880 42.857 0.00 0.00 0.00 2.24
1653 1723 9.520204 CAGAAACAAGCTAAGAAATTCTCAAAA 57.480 29.630 0.00 0.00 0.00 2.44
1654 1724 8.686334 ACAGAAACAAGCTAAGAAATTCTCAAA 58.314 29.630 0.00 0.00 0.00 2.69
1655 1725 8.131100 CACAGAAACAAGCTAAGAAATTCTCAA 58.869 33.333 0.00 0.00 0.00 3.02
1656 1726 7.498900 TCACAGAAACAAGCTAAGAAATTCTCA 59.501 33.333 0.00 0.00 0.00 3.27
1657 1727 7.865707 TCACAGAAACAAGCTAAGAAATTCTC 58.134 34.615 0.00 0.00 0.00 2.87
1658 1728 7.500559 ACTCACAGAAACAAGCTAAGAAATTCT 59.499 33.333 0.00 0.00 0.00 2.40
1659 1729 7.643579 ACTCACAGAAACAAGCTAAGAAATTC 58.356 34.615 0.00 0.00 0.00 2.17
1660 1730 7.573968 ACTCACAGAAACAAGCTAAGAAATT 57.426 32.000 0.00 0.00 0.00 1.82
1661 1731 7.389053 CCTACTCACAGAAACAAGCTAAGAAAT 59.611 37.037 0.00 0.00 0.00 2.17
1707 1777 8.769891 CCTTCCAAACAACCATTAACAATTAAC 58.230 33.333 0.00 0.00 0.00 2.01
1713 1783 4.100189 CACCCTTCCAAACAACCATTAACA 59.900 41.667 0.00 0.00 0.00 2.41
1826 1901 8.396272 AGCAACTTTGTCAACTTATGAAGTAT 57.604 30.769 0.00 0.00 41.91 2.12
1847 1922 6.265196 ACAAGTAAAAGATTCCATGTGAGCAA 59.735 34.615 0.00 0.00 0.00 3.91
1855 1930 9.178758 GAGACCATAACAAGTAAAAGATTCCAT 57.821 33.333 0.00 0.00 0.00 3.41
1867 1946 5.930135 ACAAACTGAGAGACCATAACAAGT 58.070 37.500 0.00 0.00 0.00 3.16
1952 2038 4.701956 AAATAACTCAGGAACAATGCCG 57.298 40.909 0.00 0.00 0.00 5.69
2136 2230 6.591935 CAAATATAACCTCAGCTGTTCCCTA 58.408 40.000 14.67 0.93 0.00 3.53
2270 2364 1.864711 CCATTATTGGTCGGTAGTGCG 59.135 52.381 0.00 0.00 38.30 5.34
2279 2373 5.645497 CCTAGCATAGCTTCCATTATTGGTC 59.355 44.000 0.00 0.00 41.03 4.02
2339 2433 7.545265 TGCAATAAACTGAATCCACAAATAAGC 59.455 33.333 0.00 0.00 0.00 3.09
2394 2488 9.554395 TCACACAAGACTTTATGAACAATTCTA 57.446 29.630 3.69 0.00 0.00 2.10
2422 2516 6.933521 CCAATTCACCATCCACAACATTTAAA 59.066 34.615 0.00 0.00 0.00 1.52
2534 2629 2.126888 CCATTGCAACACGGCGAC 60.127 61.111 16.62 0.00 36.28 5.19
2552 2647 9.463443 AAACTAAGAACAAACTAAATGTGATGC 57.537 29.630 0.00 0.00 0.00 3.91
2633 2728 7.729124 AACCTAACCAGCTAACTATGTAGAA 57.271 36.000 0.00 0.00 0.00 2.10
2672 2767 4.019174 AGCAGGAAAATGGTAGAACATGG 58.981 43.478 0.00 0.00 0.00 3.66
2680 2775 8.133024 ACATTCAATAAAGCAGGAAAATGGTA 57.867 30.769 0.00 0.00 0.00 3.25
2740 2835 4.189231 CGGTAAGGTGGGAAAATCTACTG 58.811 47.826 0.00 0.00 0.00 2.74
2742 2837 4.212143 ACGGTAAGGTGGGAAAATCTAC 57.788 45.455 0.00 0.00 0.00 2.59
3167 3263 1.069668 AGTAGTGTTCACCGGTTGACC 59.930 52.381 2.97 0.00 32.26 4.02
3168 3264 2.132762 CAGTAGTGTTCACCGGTTGAC 58.867 52.381 2.97 7.33 32.26 3.18
3169 3265 1.758280 ACAGTAGTGTTCACCGGTTGA 59.242 47.619 2.97 3.00 30.30 3.18
3170 3266 2.234300 ACAGTAGTGTTCACCGGTTG 57.766 50.000 2.97 0.00 30.30 3.77
3171 3267 2.994186 AACAGTAGTGTTCACCGGTT 57.006 45.000 2.97 0.00 43.88 4.44
3235 3331 0.320697 GTGGTCCTTAGTCCTTGCGT 59.679 55.000 0.00 0.00 0.00 5.24
3318 3414 7.515586 TCTGAATTTCAGCCTCATGATAGATT 58.484 34.615 19.53 0.00 43.95 2.40
3506 3602 6.872020 CACCTGCAATTTGAGAGAAAATGATT 59.128 34.615 0.00 0.00 30.21 2.57
3510 3606 4.590222 ACCACCTGCAATTTGAGAGAAAAT 59.410 37.500 0.00 0.00 0.00 1.82
3591 3687 0.250901 GTCTCCAGTTGGCATGTGGT 60.251 55.000 13.66 0.00 34.44 4.16
3602 3698 1.964223 AGATCACACAACGTCTCCAGT 59.036 47.619 0.00 0.00 0.00 4.00
3610 3706 2.076863 GGGAAGGAAGATCACACAACG 58.923 52.381 0.00 0.00 0.00 4.10
3611 3707 2.224769 TGGGGAAGGAAGATCACACAAC 60.225 50.000 0.00 0.00 0.00 3.32
3629 3725 2.817844 GGTAACTTGTTAAGCACCTGGG 59.182 50.000 0.00 0.00 35.24 4.45
3648 3744 2.580783 AGCCACAATAACCATACCAGGT 59.419 45.455 0.00 0.00 45.91 4.00
3689 3785 4.272489 TGCTAGATTTGCACCTTGCTTAT 58.728 39.130 14.03 0.00 45.31 1.73
3693 3789 3.515330 ATTGCTAGATTTGCACCTTGC 57.485 42.857 0.00 8.62 45.29 4.01
3752 3848 7.163682 CACGCAAAACTTCTAAAAGAACAGTAC 59.836 37.037 0.00 0.00 36.30 2.73
3801 3897 6.481313 CCACCATACTCATATCAGACACTTTG 59.519 42.308 0.00 0.00 0.00 2.77
3888 4035 5.221541 CCAATTGGCAACCCTTAACTGTTAA 60.222 40.000 12.53 12.08 0.00 2.01
3922 4069 2.415893 CCAACGAATGGGAAATCTGTGC 60.416 50.000 4.38 0.00 46.27 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.