Multiple sequence alignment - TraesCS4A01G085400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G085400 chr4A 100.000 3740 0 0 1 3740 90048089 90051828 0.000000e+00 6907
1 TraesCS4A01G085400 chr4A 93.006 529 30 7 2 527 89956322 89956846 0.000000e+00 765
2 TraesCS4A01G085400 chr4A 97.321 448 10 1 3295 3740 90070890 90071337 0.000000e+00 760
3 TraesCS4A01G085400 chr4A 97.111 450 11 1 3293 3740 502364853 502364404 0.000000e+00 758
4 TraesCS4A01G085400 chr4A 97.098 448 11 1 3295 3740 90065740 90066187 0.000000e+00 754
5 TraesCS4A01G085400 chr4A 87.648 591 39 13 529 1102 89956906 89957479 0.000000e+00 656
6 TraesCS4A01G085400 chr4A 85.075 134 17 3 528 661 89951916 89952046 2.340000e-27 134
7 TraesCS4A01G085400 chr4D 91.195 2476 98 37 854 3274 374336319 374333909 0.000000e+00 3254
8 TraesCS4A01G085400 chr4D 96.205 448 15 1 3295 3740 82856465 82856018 0.000000e+00 732
9 TraesCS4A01G085400 chr4D 89.474 285 17 9 578 857 374336752 374336476 7.690000e-92 348
10 TraesCS4A01G085400 chr4B 92.784 2245 93 20 576 2818 460784047 460781870 0.000000e+00 3184
11 TraesCS4A01G085400 chr4B 89.691 194 7 5 3085 3274 460781593 460781409 6.250000e-58 235
12 TraesCS4A01G085400 chr4B 81.176 170 10 5 2899 3046 460781837 460781668 2.360000e-22 117
13 TraesCS4A01G085400 chr7A 97.098 448 11 1 3295 3740 700287245 700287692 0.000000e+00 754
14 TraesCS4A01G085400 chr7A 96.000 450 16 1 3293 3740 38955050 38954601 0.000000e+00 730
15 TraesCS4A01G085400 chr7A 89.677 310 30 2 1 308 549533382 549533073 9.740000e-106 394
16 TraesCS4A01G085400 chr3D 96.652 448 13 1 3295 3740 253529860 253529413 0.000000e+00 743
17 TraesCS4A01G085400 chr3D 95.474 464 15 4 3280 3740 520652694 520653154 0.000000e+00 736
18 TraesCS4A01G085400 chr3D 84.865 185 22 5 310 492 38606005 38606185 8.250000e-42 182
19 TraesCS4A01G085400 chr1A 96.205 448 15 1 3295 3740 586731317 586730870 0.000000e+00 732
20 TraesCS4A01G085400 chr1A 87.302 315 32 5 1 308 583656171 583655858 1.650000e-93 353
21 TraesCS4A01G085400 chr3B 89.935 308 31 0 1 308 82984750 82985057 7.530000e-107 398
22 TraesCS4A01G085400 chr3B 88.629 299 25 8 6 303 14241620 14241910 4.590000e-94 355
23 TraesCS4A01G085400 chr3B 86.286 175 18 4 310 481 64711829 64711658 6.380000e-43 185
24 TraesCS4A01G085400 chr3B 84.946 186 22 4 310 492 215019149 215019331 2.290000e-42 183
25 TraesCS4A01G085400 chr6B 89.644 309 27 5 1 308 459559359 459559055 4.530000e-104 388
26 TraesCS4A01G085400 chr3A 88.997 309 33 1 1 308 579072823 579073131 7.580000e-102 381
27 TraesCS4A01G085400 chr5D 88.312 308 32 3 1 308 456630927 456631230 2.120000e-97 366
28 TraesCS4A01G085400 chr5D 86.486 185 18 5 315 496 57218723 57218903 2.950000e-46 196
29 TraesCS4A01G085400 chr5D 86.022 186 20 5 310 492 510168725 510168907 1.060000e-45 195
30 TraesCS4A01G085400 chr5B 87.097 310 38 2 1 308 281405265 281404956 2.140000e-92 350
31 TraesCS4A01G085400 chr1D 86.188 181 19 4 315 492 482104246 482104423 1.370000e-44 191
32 TraesCS4A01G085400 chr7B 84.158 202 25 4 306 502 620463624 620463425 4.930000e-44 189
33 TraesCS4A01G085400 chr7B 84.817 191 20 7 310 494 518336263 518336450 2.290000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G085400 chr4A 90048089 90051828 3739 False 6907.000000 6907 100.000000 1 3740 1 chr4A.!!$F2 3739
1 TraesCS4A01G085400 chr4A 89956322 89957479 1157 False 710.500000 765 90.327000 2 1102 2 chr4A.!!$F5 1100
2 TraesCS4A01G085400 chr4D 374333909 374336752 2843 True 1801.000000 3254 90.334500 578 3274 2 chr4D.!!$R2 2696
3 TraesCS4A01G085400 chr4B 460781409 460784047 2638 True 1178.666667 3184 87.883667 576 3274 3 chr4B.!!$R1 2698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 840 0.609957 TCAAACCATCCTGCTGGCAG 60.610 55.000 10.94 10.94 40.15 4.85 F
784 854 1.008538 GGCAGAAATAATGGCCGCG 60.009 57.895 0.00 0.00 36.58 6.46 F
1748 2006 0.099082 GCCGTCCTTCTCGACTACAG 59.901 60.000 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 1947 0.59117 AAAGGTTGCCGTCGATGTTG 59.409 50.0 3.52 0.0 0.0 3.33 R
2543 2801 1.08834 CAGCAGCCTCTGGTTCATCG 61.088 60.0 0.00 0.0 40.4 3.84 R
3592 3960 0.04109 AGGTGGCGATTTGGGGAAAT 59.959 50.0 0.00 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.952800 CCATGGATGGGTTGGGATT 57.047 52.632 5.56 0.00 44.31 3.01
37 38 2.102578 GGATGGGTTGGGATTGTTCAG 58.897 52.381 0.00 0.00 0.00 3.02
86 87 5.691754 GCACTTGAATGGTTCCACTAAAAAG 59.308 40.000 0.00 0.00 0.00 2.27
87 88 6.460953 GCACTTGAATGGTTCCACTAAAAAGA 60.461 38.462 0.00 0.00 0.00 2.52
118 121 3.015327 GCTCTGAAGATGCTGAACCATT 58.985 45.455 0.00 0.00 0.00 3.16
133 136 5.261216 TGAACCATTCCACCCTAAGAAATC 58.739 41.667 0.00 0.00 0.00 2.17
149 152 3.997021 AGAAATCGGTCGAATCATATGGC 59.003 43.478 2.13 0.00 0.00 4.40
192 195 2.158856 TGTGAGCATGACTGATGATCCC 60.159 50.000 0.00 0.00 45.42 3.85
207 210 8.233820 ACTGATGATCCCATCCCAAATAATTAA 58.766 33.333 0.00 0.00 46.64 1.40
208 211 9.263446 CTGATGATCCCATCCCAAATAATTAAT 57.737 33.333 0.00 0.00 46.64 1.40
212 215 9.618447 TGATCCCATCCCAAATAATTAATTCAT 57.382 29.630 3.39 0.00 0.00 2.57
304 308 1.307986 TGGCACCTCCAACCAAACA 59.692 52.632 0.00 0.00 43.21 2.83
332 336 0.991920 TTCGGGCCAGAAGGAAATCT 59.008 50.000 14.85 0.00 36.89 2.40
335 339 1.486726 CGGGCCAGAAGGAAATCTACT 59.513 52.381 4.39 0.00 36.89 2.57
348 352 7.510675 AGGAAATCTACTGACCCAAATAAGA 57.489 36.000 0.00 0.00 0.00 2.10
358 362 2.378547 ACCCAAATAAGAGGCCAGTCAA 59.621 45.455 5.01 0.00 0.00 3.18
359 363 3.181423 ACCCAAATAAGAGGCCAGTCAAA 60.181 43.478 5.01 0.00 0.00 2.69
387 391 4.924305 ATGCTCACAGAACAAACAACAT 57.076 36.364 0.00 0.00 0.00 2.71
392 396 6.934083 TGCTCACAGAACAAACAACATAGATA 59.066 34.615 0.00 0.00 0.00 1.98
393 397 7.443879 TGCTCACAGAACAAACAACATAGATAA 59.556 33.333 0.00 0.00 0.00 1.75
458 462 4.626042 CCACAAAATCGATTGACCCAAAA 58.374 39.130 12.25 0.00 34.38 2.44
499 503 8.667076 ACTGAAAACGTAGGTAAATTGTACTT 57.333 30.769 0.00 0.00 0.00 2.24
500 504 9.112725 ACTGAAAACGTAGGTAAATTGTACTTT 57.887 29.630 0.00 0.00 0.00 2.66
509 513 6.766429 AGGTAAATTGTACTTTCTCCGTTCT 58.234 36.000 0.00 0.00 0.00 3.01
527 531 4.261581 CGTTCTAAATTACTCGTCGTGGTC 59.738 45.833 0.00 0.00 0.00 4.02
585 649 2.021457 GGATTTTGGTACGGGTCATGG 58.979 52.381 0.00 0.00 0.00 3.66
675 740 6.117911 TGATTGACTGCACCGTTTATTATG 57.882 37.500 0.00 0.00 0.00 1.90
725 790 7.083875 TCATAAACAGCAAGTTAATACAGGC 57.916 36.000 0.00 0.00 40.26 4.85
743 808 1.890174 CCCGAGCCCCAAAATCAAC 59.110 57.895 0.00 0.00 0.00 3.18
765 835 2.731572 CCAGAATCAAACCATCCTGCT 58.268 47.619 0.00 0.00 0.00 4.24
766 836 2.426024 CCAGAATCAAACCATCCTGCTG 59.574 50.000 0.00 0.00 0.00 4.41
770 840 0.609957 TCAAACCATCCTGCTGGCAG 60.610 55.000 10.94 10.94 40.15 4.85
781 851 1.068127 CTGCTGGCAGAAATAATGGCC 59.932 52.381 20.86 0.00 46.30 5.36
784 854 1.008538 GGCAGAAATAATGGCCGCG 60.009 57.895 0.00 0.00 36.58 6.46
839 909 2.240612 GACGCCATCACCAACGAAGC 62.241 60.000 0.00 0.00 0.00 3.86
858 1093 4.897025 AGCTCGTCAATACTACTGTACC 57.103 45.455 0.00 0.00 0.00 3.34
897 1132 1.971695 GCATATAAGGGCGGCCACC 60.972 63.158 31.59 0.00 0.00 4.61
993 1233 1.215382 CAAGGCCTGATCGTCACGA 59.785 57.895 5.69 0.28 41.13 4.35
1014 1254 1.529309 GACCATGAAGCCTCCTCCC 59.471 63.158 0.00 0.00 0.00 4.30
1022 1262 4.496336 GCCTCCTCCCGCATTGCT 62.496 66.667 7.12 0.00 0.00 3.91
1056 1308 4.020617 CTTGTCCTGGCCCTCGCA 62.021 66.667 0.00 0.00 36.38 5.10
1689 1947 2.758979 TCTGTATCCTTTCGTCCACCTC 59.241 50.000 0.00 0.00 0.00 3.85
1716 1974 2.412847 CGACGGCAACCTTTTCATCTTC 60.413 50.000 0.00 0.00 0.00 2.87
1748 2006 0.099082 GCCGTCCTTCTCGACTACAG 59.901 60.000 0.00 0.00 0.00 2.74
1845 2103 4.044439 CTGCTGCCCCTGAAGCCT 62.044 66.667 0.00 0.00 38.71 4.58
1971 2229 0.456142 TCAAGATCACGGACGCTTCG 60.456 55.000 0.00 0.00 0.00 3.79
2034 2292 1.527844 GGACATGATCCTGCTGCCC 60.528 63.158 0.00 0.00 45.22 5.36
2418 2676 0.608640 ACGGACAGTCAATGACCCTC 59.391 55.000 10.12 4.66 40.23 4.30
2439 2697 4.680237 TTCGAGGTGCCAGCGGTG 62.680 66.667 7.86 7.86 0.00 4.94
2563 2821 1.375098 GATGAACCAGAGGCTGCTGC 61.375 60.000 7.10 7.10 34.56 5.25
2747 3005 1.226323 ACATAGAGTGACGCGACGC 60.226 57.895 15.93 14.88 0.00 5.19
2749 3007 3.450559 ATAGAGTGACGCGACGCCG 62.451 63.158 15.93 11.99 39.16 6.46
2835 3095 1.661617 TGTCTCGTGTGGTTTTTGTCG 59.338 47.619 0.00 0.00 0.00 4.35
2836 3096 1.662122 GTCTCGTGTGGTTTTTGTCGT 59.338 47.619 0.00 0.00 0.00 4.34
2837 3097 1.928503 TCTCGTGTGGTTTTTGTCGTC 59.071 47.619 0.00 0.00 0.00 4.20
2887 3147 3.126171 TGACTTGGTTCGTTGTTCAGTTG 59.874 43.478 0.00 0.00 0.00 3.16
2890 3150 4.093850 ACTTGGTTCGTTGTTCAGTTGTAC 59.906 41.667 0.00 0.00 0.00 2.90
2891 3151 2.937799 TGGTTCGTTGTTCAGTTGTACC 59.062 45.455 0.00 0.00 0.00 3.34
2892 3152 2.033492 GGTTCGTTGTTCAGTTGTACCG 60.033 50.000 0.00 0.00 0.00 4.02
2893 3153 2.582728 TCGTTGTTCAGTTGTACCGT 57.417 45.000 0.00 0.00 0.00 4.83
2894 3154 2.195096 TCGTTGTTCAGTTGTACCGTG 58.805 47.619 0.00 0.00 0.00 4.94
2895 3155 1.332552 CGTTGTTCAGTTGTACCGTGC 60.333 52.381 0.00 0.00 0.00 5.34
2896 3156 0.931702 TTGTTCAGTTGTACCGTGCG 59.068 50.000 0.00 0.00 0.00 5.34
2897 3157 0.179105 TGTTCAGTTGTACCGTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
2948 3212 2.493973 GCAGGACAGAGAGAGCGG 59.506 66.667 0.00 0.00 0.00 5.52
2963 3227 1.425428 GCGGAAGGCGAAGAATGTG 59.575 57.895 0.00 0.00 0.00 3.21
3040 3358 1.109920 TCCCTAGACGCATCTGCTCC 61.110 60.000 0.00 0.00 39.32 4.70
3041 3359 1.112315 CCCTAGACGCATCTGCTCCT 61.112 60.000 0.00 0.21 39.32 3.69
3042 3360 0.031857 CCTAGACGCATCTGCTCCTG 59.968 60.000 0.00 0.00 39.32 3.86
3043 3361 0.031857 CTAGACGCATCTGCTCCTGG 59.968 60.000 0.00 0.00 39.32 4.45
3044 3362 2.021068 TAGACGCATCTGCTCCTGGC 62.021 60.000 0.00 0.00 39.32 4.85
3045 3363 4.479993 ACGCATCTGCTCCTGGCC 62.480 66.667 0.00 0.00 40.92 5.36
3047 3365 3.806667 GCATCTGCTCCTGGCCCT 61.807 66.667 0.00 0.00 40.92 5.19
3048 3366 2.192443 CATCTGCTCCTGGCCCTG 59.808 66.667 0.00 0.00 40.92 4.45
3049 3367 3.095163 ATCTGCTCCTGGCCCTGG 61.095 66.667 0.00 2.20 40.92 4.45
3124 3488 3.125573 GCGGCGTTCCTTCCTTCC 61.126 66.667 9.37 0.00 0.00 3.46
3125 3489 2.663196 CGGCGTTCCTTCCTTCCT 59.337 61.111 0.00 0.00 0.00 3.36
3126 3490 1.003718 CGGCGTTCCTTCCTTCCTT 60.004 57.895 0.00 0.00 0.00 3.36
3127 3491 1.019805 CGGCGTTCCTTCCTTCCTTC 61.020 60.000 0.00 0.00 0.00 3.46
3242 3606 4.838152 CTGGGGCGTCACGGGATG 62.838 72.222 1.37 1.37 0.00 3.51
3282 3650 2.505982 ACGTGCAGTCAGCTTGGT 59.494 55.556 0.00 0.00 45.94 3.67
3283 3651 1.745890 ACGTGCAGTCAGCTTGGTA 59.254 52.632 0.00 0.00 45.94 3.25
3284 3652 0.600255 ACGTGCAGTCAGCTTGGTAC 60.600 55.000 0.00 0.00 45.94 3.34
3285 3653 0.319900 CGTGCAGTCAGCTTGGTACT 60.320 55.000 0.00 0.00 45.94 2.73
3286 3654 1.151668 GTGCAGTCAGCTTGGTACTG 58.848 55.000 9.76 9.76 45.94 2.74
3288 3656 2.846371 CAGTCAGCTTGGTACTGCC 58.154 57.895 0.00 0.00 34.73 4.85
3289 3657 1.016130 CAGTCAGCTTGGTACTGCCG 61.016 60.000 0.00 0.00 41.21 5.69
3290 3658 1.185618 AGTCAGCTTGGTACTGCCGA 61.186 55.000 0.00 0.00 41.21 5.54
3297 3665 3.152261 CTTGGTACTGCCGAGTAAGAG 57.848 52.381 0.00 0.00 42.68 2.85
3298 3666 0.815734 TGGTACTGCCGAGTAAGAGC 59.184 55.000 0.00 0.00 41.21 4.09
3299 3667 0.815734 GGTACTGCCGAGTAAGAGCA 59.184 55.000 0.00 0.00 36.40 4.26
3300 3668 1.203994 GGTACTGCCGAGTAAGAGCAA 59.796 52.381 0.00 0.00 36.40 3.91
3301 3669 2.531206 GTACTGCCGAGTAAGAGCAAG 58.469 52.381 0.00 0.00 36.40 4.01
3302 3670 0.969894 ACTGCCGAGTAAGAGCAAGT 59.030 50.000 0.00 0.00 35.79 3.16
3303 3671 2.168496 ACTGCCGAGTAAGAGCAAGTA 58.832 47.619 0.00 0.00 35.79 2.24
3304 3672 2.561419 ACTGCCGAGTAAGAGCAAGTAA 59.439 45.455 0.00 0.00 35.79 2.24
3305 3673 3.195825 ACTGCCGAGTAAGAGCAAGTAAT 59.804 43.478 0.00 0.00 35.79 1.89
3306 3674 4.401519 ACTGCCGAGTAAGAGCAAGTAATA 59.598 41.667 0.00 0.00 35.79 0.98
3307 3675 5.105473 ACTGCCGAGTAAGAGCAAGTAATAA 60.105 40.000 0.00 0.00 35.79 1.40
3308 3676 5.348986 TGCCGAGTAAGAGCAAGTAATAAG 58.651 41.667 0.00 0.00 32.56 1.73
3309 3677 4.745620 GCCGAGTAAGAGCAAGTAATAAGG 59.254 45.833 0.00 0.00 0.00 2.69
3310 3678 4.745620 CCGAGTAAGAGCAAGTAATAAGGC 59.254 45.833 0.00 0.00 0.00 4.35
3311 3679 5.452077 CCGAGTAAGAGCAAGTAATAAGGCT 60.452 44.000 0.00 0.00 39.75 4.58
3317 3685 4.826274 AGCAAGTAATAAGGCTCACTCA 57.174 40.909 0.00 0.00 28.71 3.41
3318 3686 4.764172 AGCAAGTAATAAGGCTCACTCAG 58.236 43.478 0.00 0.00 28.71 3.35
3328 3696 2.898729 GCTCACTCAGCTGGCTATAA 57.101 50.000 15.13 0.00 45.83 0.98
3329 3697 2.753296 GCTCACTCAGCTGGCTATAAG 58.247 52.381 15.13 5.00 45.83 1.73
3330 3698 2.753296 CTCACTCAGCTGGCTATAAGC 58.247 52.381 15.13 0.00 41.46 3.09
3341 3709 1.867166 GCTATAAGCCCTTCCACGTC 58.133 55.000 0.00 0.00 34.48 4.34
3342 3710 1.138266 GCTATAAGCCCTTCCACGTCA 59.862 52.381 0.00 0.00 34.48 4.35
3343 3711 2.803492 GCTATAAGCCCTTCCACGTCAG 60.803 54.545 0.00 0.00 34.48 3.51
3344 3712 0.107654 ATAAGCCCTTCCACGTCAGC 60.108 55.000 0.00 0.00 0.00 4.26
3345 3713 2.180159 TAAGCCCTTCCACGTCAGCC 62.180 60.000 0.00 0.00 0.00 4.85
3346 3714 4.329545 GCCCTTCCACGTCAGCCA 62.330 66.667 0.00 0.00 0.00 4.75
3347 3715 2.429930 CCCTTCCACGTCAGCCAA 59.570 61.111 0.00 0.00 0.00 4.52
3348 3716 1.228124 CCCTTCCACGTCAGCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
3349 3717 0.609131 CCCTTCCACGTCAGCCAAAT 60.609 55.000 0.00 0.00 0.00 2.32
3350 3718 0.804989 CCTTCCACGTCAGCCAAATC 59.195 55.000 0.00 0.00 0.00 2.17
3351 3719 1.522668 CTTCCACGTCAGCCAAATCA 58.477 50.000 0.00 0.00 0.00 2.57
3352 3720 1.197721 CTTCCACGTCAGCCAAATCAC 59.802 52.381 0.00 0.00 0.00 3.06
3353 3721 0.107643 TCCACGTCAGCCAAATCACA 59.892 50.000 0.00 0.00 0.00 3.58
3354 3722 1.167851 CCACGTCAGCCAAATCACAT 58.832 50.000 0.00 0.00 0.00 3.21
3355 3723 1.131126 CCACGTCAGCCAAATCACATC 59.869 52.381 0.00 0.00 0.00 3.06
3356 3724 2.079158 CACGTCAGCCAAATCACATCT 58.921 47.619 0.00 0.00 0.00 2.90
3357 3725 2.079158 ACGTCAGCCAAATCACATCTG 58.921 47.619 0.00 0.00 0.00 2.90
3358 3726 1.399440 CGTCAGCCAAATCACATCTGG 59.601 52.381 0.00 0.00 0.00 3.86
3359 3727 2.715046 GTCAGCCAAATCACATCTGGA 58.285 47.619 0.00 0.00 31.38 3.86
3360 3728 2.681848 GTCAGCCAAATCACATCTGGAG 59.318 50.000 0.00 0.00 31.38 3.86
3361 3729 2.022195 CAGCCAAATCACATCTGGAGG 58.978 52.381 0.00 0.00 31.38 4.30
3362 3730 1.064166 AGCCAAATCACATCTGGAGGG 60.064 52.381 0.00 0.00 31.38 4.30
3363 3731 1.064463 GCCAAATCACATCTGGAGGGA 60.064 52.381 0.00 0.00 31.38 4.20
3364 3732 2.621407 GCCAAATCACATCTGGAGGGAA 60.621 50.000 0.00 0.00 31.38 3.97
3365 3733 3.285484 CCAAATCACATCTGGAGGGAAG 58.715 50.000 0.00 0.00 31.38 3.46
3366 3734 3.054139 CCAAATCACATCTGGAGGGAAGA 60.054 47.826 0.00 0.00 31.38 2.87
3367 3735 4.197750 CAAATCACATCTGGAGGGAAGAG 58.802 47.826 0.00 0.00 0.00 2.85
3368 3736 2.928036 TCACATCTGGAGGGAAGAGA 57.072 50.000 0.00 0.00 0.00 3.10
3369 3737 3.190383 TCACATCTGGAGGGAAGAGAA 57.810 47.619 0.00 0.00 0.00 2.87
3370 3738 3.520696 TCACATCTGGAGGGAAGAGAAA 58.479 45.455 0.00 0.00 0.00 2.52
3371 3739 3.517100 TCACATCTGGAGGGAAGAGAAAG 59.483 47.826 0.00 0.00 0.00 2.62
3372 3740 3.517100 CACATCTGGAGGGAAGAGAAAGA 59.483 47.826 0.00 0.00 0.00 2.52
3373 3741 3.774216 ACATCTGGAGGGAAGAGAAAGAG 59.226 47.826 0.00 0.00 0.00 2.85
3374 3742 2.826488 TCTGGAGGGAAGAGAAAGAGG 58.174 52.381 0.00 0.00 0.00 3.69
3375 3743 1.836802 CTGGAGGGAAGAGAAAGAGGG 59.163 57.143 0.00 0.00 0.00 4.30
3376 3744 1.437149 TGGAGGGAAGAGAAAGAGGGA 59.563 52.381 0.00 0.00 0.00 4.20
3377 3745 2.115427 GGAGGGAAGAGAAAGAGGGAG 58.885 57.143 0.00 0.00 0.00 4.30
3378 3746 2.292587 GGAGGGAAGAGAAAGAGGGAGA 60.293 54.545 0.00 0.00 0.00 3.71
3379 3747 3.031013 GAGGGAAGAGAAAGAGGGAGAG 58.969 54.545 0.00 0.00 0.00 3.20
3380 3748 2.657459 AGGGAAGAGAAAGAGGGAGAGA 59.343 50.000 0.00 0.00 0.00 3.10
3381 3749 3.031013 GGGAAGAGAAAGAGGGAGAGAG 58.969 54.545 0.00 0.00 0.00 3.20
3382 3750 3.309556 GGGAAGAGAAAGAGGGAGAGAGA 60.310 52.174 0.00 0.00 0.00 3.10
3383 3751 4.349365 GGAAGAGAAAGAGGGAGAGAGAA 58.651 47.826 0.00 0.00 0.00 2.87
3384 3752 4.402474 GGAAGAGAAAGAGGGAGAGAGAAG 59.598 50.000 0.00 0.00 0.00 2.85
3385 3753 3.365472 AGAGAAAGAGGGAGAGAGAAGC 58.635 50.000 0.00 0.00 0.00 3.86
3386 3754 2.099098 GAGAAAGAGGGAGAGAGAAGCG 59.901 54.545 0.00 0.00 0.00 4.68
3387 3755 2.096248 GAAAGAGGGAGAGAGAAGCGA 58.904 52.381 0.00 0.00 0.00 4.93
3388 3756 2.223803 AAGAGGGAGAGAGAAGCGAA 57.776 50.000 0.00 0.00 0.00 4.70
3389 3757 1.470051 AGAGGGAGAGAGAAGCGAAC 58.530 55.000 0.00 0.00 0.00 3.95
3390 3758 0.099791 GAGGGAGAGAGAAGCGAACG 59.900 60.000 0.00 0.00 0.00 3.95
3391 3759 1.139947 GGGAGAGAGAAGCGAACGG 59.860 63.158 0.00 0.00 0.00 4.44
3392 3760 1.139947 GGAGAGAGAAGCGAACGGG 59.860 63.158 0.00 0.00 0.00 5.28
3393 3761 1.517475 GAGAGAGAAGCGAACGGGC 60.517 63.158 0.00 0.00 0.00 6.13
3394 3762 2.881352 GAGAGAAGCGAACGGGCG 60.881 66.667 0.00 0.00 38.18 6.13
3403 3771 3.039588 GAACGGGCGCTTCGTCAA 61.040 61.111 23.99 0.00 40.18 3.18
3404 3772 3.011760 GAACGGGCGCTTCGTCAAG 62.012 63.158 23.99 2.58 40.18 3.02
3426 3794 2.124736 GGGCTGCGGCACAAGATA 60.125 61.111 21.31 0.00 42.37 1.98
3427 3795 2.472909 GGGCTGCGGCACAAGATAC 61.473 63.158 21.31 0.00 42.37 2.24
3428 3796 2.703409 GCTGCGGCACAAGATACG 59.297 61.111 14.08 0.00 38.54 3.06
3429 3797 1.809619 GCTGCGGCACAAGATACGA 60.810 57.895 14.08 0.00 38.54 3.43
3430 3798 1.756375 GCTGCGGCACAAGATACGAG 61.756 60.000 14.08 0.00 38.54 4.18
3431 3799 0.179137 CTGCGGCACAAGATACGAGA 60.179 55.000 0.00 0.00 0.00 4.04
3432 3800 0.179137 TGCGGCACAAGATACGAGAG 60.179 55.000 0.00 0.00 0.00 3.20
3433 3801 1.483424 GCGGCACAAGATACGAGAGC 61.483 60.000 0.00 0.00 0.00 4.09
3434 3802 0.101399 CGGCACAAGATACGAGAGCT 59.899 55.000 0.00 0.00 0.00 4.09
3435 3803 1.469940 CGGCACAAGATACGAGAGCTT 60.470 52.381 0.00 0.00 0.00 3.74
3436 3804 2.622436 GGCACAAGATACGAGAGCTTT 58.378 47.619 0.00 0.00 0.00 3.51
3437 3805 2.349886 GGCACAAGATACGAGAGCTTTG 59.650 50.000 0.00 0.00 0.00 2.77
3438 3806 2.222908 GCACAAGATACGAGAGCTTTGC 60.223 50.000 0.00 1.08 0.00 3.68
3439 3807 2.028523 CACAAGATACGAGAGCTTTGCG 59.971 50.000 0.00 0.00 0.00 4.85
3440 3808 1.005557 CAAGATACGAGAGCTTTGCGC 60.006 52.381 0.00 0.00 39.57 6.09
3441 3809 0.528684 AGATACGAGAGCTTTGCGCC 60.529 55.000 4.18 0.00 40.39 6.53
3442 3810 1.491505 GATACGAGAGCTTTGCGCCC 61.492 60.000 4.18 0.00 40.39 6.13
3443 3811 3.982372 TACGAGAGCTTTGCGCCCG 62.982 63.158 4.18 0.00 40.39 6.13
3447 3815 4.766088 GAGCTTTGCGCCCGCTTG 62.766 66.667 14.13 5.21 42.51 4.01
3469 3837 4.914420 CCGTGGCGAGCGCTAGAG 62.914 72.222 22.43 12.03 41.60 2.43
3517 3885 3.832492 GCCTCTCGCGCTTCTCCT 61.832 66.667 5.56 0.00 0.00 3.69
3518 3886 2.888863 CCTCTCGCGCTTCTCCTT 59.111 61.111 5.56 0.00 0.00 3.36
3519 3887 1.226831 CCTCTCGCGCTTCTCCTTC 60.227 63.158 5.56 0.00 0.00 3.46
3520 3888 1.226831 CTCTCGCGCTTCTCCTTCC 60.227 63.158 5.56 0.00 0.00 3.46
3521 3889 1.662438 CTCTCGCGCTTCTCCTTCCT 61.662 60.000 5.56 0.00 0.00 3.36
3522 3890 1.226831 CTCGCGCTTCTCCTTCCTC 60.227 63.158 5.56 0.00 0.00 3.71
3523 3891 2.202810 CGCGCTTCTCCTTCCTCC 60.203 66.667 5.56 0.00 0.00 4.30
3524 3892 2.716017 CGCGCTTCTCCTTCCTCCT 61.716 63.158 5.56 0.00 0.00 3.69
3525 3893 1.599576 GCGCTTCTCCTTCCTCCTT 59.400 57.895 0.00 0.00 0.00 3.36
3526 3894 0.461163 GCGCTTCTCCTTCCTCCTTC 60.461 60.000 0.00 0.00 0.00 3.46
3527 3895 0.179124 CGCTTCTCCTTCCTCCTTCG 60.179 60.000 0.00 0.00 0.00 3.79
3528 3896 0.461163 GCTTCTCCTTCCTCCTTCGC 60.461 60.000 0.00 0.00 0.00 4.70
3529 3897 0.179124 CTTCTCCTTCCTCCTTCGCG 60.179 60.000 0.00 0.00 0.00 5.87
3530 3898 2.202810 CTCCTTCCTCCTTCGCGC 60.203 66.667 0.00 0.00 0.00 6.86
3531 3899 4.129737 TCCTTCCTCCTTCGCGCG 62.130 66.667 26.76 26.76 0.00 6.86
3534 3902 4.673298 TTCCTCCTTCGCGCGCAA 62.673 61.111 32.61 21.88 0.00 4.85
3535 3903 4.673298 TCCTCCTTCGCGCGCAAA 62.673 61.111 32.61 19.71 0.00 3.68
3536 3904 3.722295 CCTCCTTCGCGCGCAAAA 61.722 61.111 32.61 22.54 0.00 2.44
3537 3905 2.251075 CTCCTTCGCGCGCAAAAA 59.749 55.556 32.61 19.94 0.00 1.94
3538 3906 1.154225 CTCCTTCGCGCGCAAAAAT 60.154 52.632 32.61 0.00 0.00 1.82
3539 3907 1.128147 CTCCTTCGCGCGCAAAAATC 61.128 55.000 32.61 0.00 0.00 2.17
3540 3908 1.441849 CCTTCGCGCGCAAAAATCA 60.442 52.632 32.61 1.08 0.00 2.57
3541 3909 1.398022 CCTTCGCGCGCAAAAATCAG 61.398 55.000 32.61 12.21 0.00 2.90
3542 3910 1.990877 CTTCGCGCGCAAAAATCAGC 61.991 55.000 32.61 0.00 0.00 4.26
3543 3911 2.456594 TTCGCGCGCAAAAATCAGCT 62.457 50.000 32.61 0.00 0.00 4.24
3544 3912 2.491271 CGCGCGCAAAAATCAGCTC 61.491 57.895 32.61 0.00 0.00 4.09
3545 3913 2.491271 GCGCGCAAAAATCAGCTCG 61.491 57.895 29.10 0.00 41.41 5.03
3546 3914 1.154413 CGCGCAAAAATCAGCTCGT 60.154 52.632 8.75 0.00 34.60 4.18
3547 3915 1.390664 CGCGCAAAAATCAGCTCGTG 61.391 55.000 8.75 0.00 34.60 4.35
3548 3916 1.668253 GCGCAAAAATCAGCTCGTGC 61.668 55.000 0.30 0.07 40.05 5.34
3549 3917 1.067199 CGCAAAAATCAGCTCGTGCC 61.067 55.000 5.73 0.00 40.80 5.01
3550 3918 1.067199 GCAAAAATCAGCTCGTGCCG 61.067 55.000 5.73 0.00 40.80 5.69
3551 3919 0.238289 CAAAAATCAGCTCGTGCCGT 59.762 50.000 5.73 0.00 40.80 5.68
3552 3920 0.517316 AAAAATCAGCTCGTGCCGTC 59.483 50.000 5.73 0.00 40.80 4.79
3553 3921 1.626654 AAAATCAGCTCGTGCCGTCG 61.627 55.000 5.73 0.00 40.80 5.12
3562 3930 2.437002 GTGCCGTCGCCCCAAATA 60.437 61.111 0.00 0.00 0.00 1.40
3563 3931 2.124901 TGCCGTCGCCCCAAATAG 60.125 61.111 0.00 0.00 0.00 1.73
3564 3932 3.583086 GCCGTCGCCCCAAATAGC 61.583 66.667 0.00 0.00 0.00 2.97
3565 3933 2.189521 CCGTCGCCCCAAATAGCT 59.810 61.111 0.00 0.00 0.00 3.32
3566 3934 1.451387 CCGTCGCCCCAAATAGCTT 60.451 57.895 0.00 0.00 0.00 3.74
3567 3935 1.436983 CCGTCGCCCCAAATAGCTTC 61.437 60.000 0.00 0.00 0.00 3.86
3568 3936 1.436983 CGTCGCCCCAAATAGCTTCC 61.437 60.000 0.00 0.00 0.00 3.46
3569 3937 0.107165 GTCGCCCCAAATAGCTTCCT 60.107 55.000 0.00 0.00 0.00 3.36
3570 3938 0.180406 TCGCCCCAAATAGCTTCCTC 59.820 55.000 0.00 0.00 0.00 3.71
3571 3939 1.160329 CGCCCCAAATAGCTTCCTCG 61.160 60.000 0.00 0.00 0.00 4.63
3572 3940 1.448119 GCCCCAAATAGCTTCCTCGC 61.448 60.000 0.00 0.00 0.00 5.03
3573 3941 1.160329 CCCCAAATAGCTTCCTCGCG 61.160 60.000 0.00 0.00 34.40 5.87
3574 3942 1.643832 CCAAATAGCTTCCTCGCGC 59.356 57.895 0.00 0.00 34.40 6.86
3575 3943 1.643832 CAAATAGCTTCCTCGCGCC 59.356 57.895 0.00 0.00 34.40 6.53
3576 3944 1.089481 CAAATAGCTTCCTCGCGCCA 61.089 55.000 0.00 0.00 34.40 5.69
3577 3945 0.392461 AAATAGCTTCCTCGCGCCAA 60.392 50.000 0.00 0.00 34.40 4.52
3578 3946 0.392461 AATAGCTTCCTCGCGCCAAA 60.392 50.000 0.00 0.00 34.40 3.28
3579 3947 0.179045 ATAGCTTCCTCGCGCCAAAT 60.179 50.000 0.00 0.00 34.40 2.32
3580 3948 0.810031 TAGCTTCCTCGCGCCAAATC 60.810 55.000 0.00 0.00 34.40 2.17
3581 3949 2.398554 GCTTCCTCGCGCCAAATCA 61.399 57.895 0.00 0.00 0.00 2.57
3582 3950 1.922135 GCTTCCTCGCGCCAAATCAA 61.922 55.000 0.00 0.00 0.00 2.57
3583 3951 0.097674 CTTCCTCGCGCCAAATCAAG 59.902 55.000 0.00 0.00 0.00 3.02
3584 3952 1.922135 TTCCTCGCGCCAAATCAAGC 61.922 55.000 0.00 0.00 0.00 4.01
3585 3953 2.100991 CTCGCGCCAAATCAAGCC 59.899 61.111 0.00 0.00 0.00 4.35
3586 3954 2.359850 TCGCGCCAAATCAAGCCT 60.360 55.556 0.00 0.00 0.00 4.58
3587 3955 1.926511 CTCGCGCCAAATCAAGCCTT 61.927 55.000 0.00 0.00 0.00 4.35
3588 3956 1.514873 CGCGCCAAATCAAGCCTTC 60.515 57.895 0.00 0.00 0.00 3.46
3589 3957 1.153765 GCGCCAAATCAAGCCTTCC 60.154 57.895 0.00 0.00 0.00 3.46
3590 3958 1.876497 GCGCCAAATCAAGCCTTCCA 61.876 55.000 0.00 0.00 0.00 3.53
3591 3959 0.602562 CGCCAAATCAAGCCTTCCAA 59.397 50.000 0.00 0.00 0.00 3.53
3592 3960 1.000731 CGCCAAATCAAGCCTTCCAAA 59.999 47.619 0.00 0.00 0.00 3.28
3593 3961 2.354003 CGCCAAATCAAGCCTTCCAAAT 60.354 45.455 0.00 0.00 0.00 2.32
3594 3962 3.678289 GCCAAATCAAGCCTTCCAAATT 58.322 40.909 0.00 0.00 0.00 1.82
3595 3963 4.074259 GCCAAATCAAGCCTTCCAAATTT 58.926 39.130 0.00 0.00 0.00 1.82
3596 3964 4.154737 GCCAAATCAAGCCTTCCAAATTTC 59.845 41.667 0.00 0.00 0.00 2.17
3597 3965 4.696877 CCAAATCAAGCCTTCCAAATTTCC 59.303 41.667 0.00 0.00 0.00 3.13
3598 3966 4.558226 AATCAAGCCTTCCAAATTTCCC 57.442 40.909 0.00 0.00 0.00 3.97
3599 3967 2.256306 TCAAGCCTTCCAAATTTCCCC 58.744 47.619 0.00 0.00 0.00 4.81
3600 3968 1.977129 CAAGCCTTCCAAATTTCCCCA 59.023 47.619 0.00 0.00 0.00 4.96
3601 3969 2.371510 CAAGCCTTCCAAATTTCCCCAA 59.628 45.455 0.00 0.00 0.00 4.12
3602 3970 2.700354 AGCCTTCCAAATTTCCCCAAA 58.300 42.857 0.00 0.00 0.00 3.28
3603 3971 3.259328 AGCCTTCCAAATTTCCCCAAAT 58.741 40.909 0.00 0.00 33.27 2.32
3604 3972 3.264193 AGCCTTCCAAATTTCCCCAAATC 59.736 43.478 0.00 0.00 30.37 2.17
3605 3973 3.860641 CCTTCCAAATTTCCCCAAATCG 58.139 45.455 0.00 0.00 30.37 3.34
3606 3974 3.261580 CTTCCAAATTTCCCCAAATCGC 58.738 45.455 0.00 0.00 30.37 4.58
3607 3975 1.552792 TCCAAATTTCCCCAAATCGCC 59.447 47.619 0.00 0.00 30.37 5.54
3608 3976 1.277557 CCAAATTTCCCCAAATCGCCA 59.722 47.619 0.00 0.00 30.37 5.69
3609 3977 2.345876 CAAATTTCCCCAAATCGCCAC 58.654 47.619 0.00 0.00 30.37 5.01
3610 3978 0.901827 AATTTCCCCAAATCGCCACC 59.098 50.000 0.00 0.00 30.37 4.61
3611 3979 0.041090 ATTTCCCCAAATCGCCACCT 59.959 50.000 0.00 0.00 0.00 4.00
3612 3980 0.610785 TTTCCCCAAATCGCCACCTC 60.611 55.000 0.00 0.00 0.00 3.85
3613 3981 1.497309 TTCCCCAAATCGCCACCTCT 61.497 55.000 0.00 0.00 0.00 3.69
3614 3982 1.452108 CCCCAAATCGCCACCTCTC 60.452 63.158 0.00 0.00 0.00 3.20
3615 3983 1.452108 CCCAAATCGCCACCTCTCC 60.452 63.158 0.00 0.00 0.00 3.71
3616 3984 1.452108 CCAAATCGCCACCTCTCCC 60.452 63.158 0.00 0.00 0.00 4.30
3617 3985 1.815421 CAAATCGCCACCTCTCCCG 60.815 63.158 0.00 0.00 0.00 5.14
3618 3986 1.987855 AAATCGCCACCTCTCCCGA 60.988 57.895 0.00 0.00 0.00 5.14
3619 3987 1.550130 AAATCGCCACCTCTCCCGAA 61.550 55.000 0.00 0.00 33.10 4.30
3620 3988 2.240162 AATCGCCACCTCTCCCGAAC 62.240 60.000 0.00 0.00 33.10 3.95
3621 3989 4.452733 CGCCACCTCTCCCGAACC 62.453 72.222 0.00 0.00 0.00 3.62
3622 3990 4.097361 GCCACCTCTCCCGAACCC 62.097 72.222 0.00 0.00 0.00 4.11
3623 3991 2.284699 CCACCTCTCCCGAACCCT 60.285 66.667 0.00 0.00 0.00 4.34
3624 3992 1.001248 CCACCTCTCCCGAACCCTA 59.999 63.158 0.00 0.00 0.00 3.53
3625 3993 0.616679 CCACCTCTCCCGAACCCTAA 60.617 60.000 0.00 0.00 0.00 2.69
3626 3994 1.272807 CACCTCTCCCGAACCCTAAA 58.727 55.000 0.00 0.00 0.00 1.85
3627 3995 1.626825 CACCTCTCCCGAACCCTAAAA 59.373 52.381 0.00 0.00 0.00 1.52
3628 3996 2.238898 CACCTCTCCCGAACCCTAAAAT 59.761 50.000 0.00 0.00 0.00 1.82
3629 3997 2.917600 ACCTCTCCCGAACCCTAAAATT 59.082 45.455 0.00 0.00 0.00 1.82
3630 3998 3.279434 CCTCTCCCGAACCCTAAAATTG 58.721 50.000 0.00 0.00 0.00 2.32
3631 3999 3.308188 CCTCTCCCGAACCCTAAAATTGT 60.308 47.826 0.00 0.00 0.00 2.71
3632 4000 3.939592 CTCTCCCGAACCCTAAAATTGTC 59.060 47.826 0.00 0.00 0.00 3.18
3633 4001 2.676342 CTCCCGAACCCTAAAATTGTCG 59.324 50.000 0.00 0.00 0.00 4.35
3634 4002 1.131693 CCCGAACCCTAAAATTGTCGC 59.868 52.381 0.00 0.00 0.00 5.19
3635 4003 1.131693 CCGAACCCTAAAATTGTCGCC 59.868 52.381 0.00 0.00 0.00 5.54
3636 4004 1.201987 CGAACCCTAAAATTGTCGCCG 60.202 52.381 0.00 0.00 0.00 6.46
3637 4005 2.078392 GAACCCTAAAATTGTCGCCGA 58.922 47.619 0.00 0.00 0.00 5.54
3638 4006 1.445871 ACCCTAAAATTGTCGCCGAC 58.554 50.000 10.96 10.96 0.00 4.79
3639 4007 0.372334 CCCTAAAATTGTCGCCGACG 59.628 55.000 13.18 0.00 42.01 5.12
3640 4008 0.247537 CCTAAAATTGTCGCCGACGC 60.248 55.000 13.18 0.00 39.84 5.19
3641 4009 0.440758 CTAAAATTGTCGCCGACGCA 59.559 50.000 13.18 1.73 39.84 5.24
3642 4010 0.164217 TAAAATTGTCGCCGACGCAC 59.836 50.000 13.18 0.00 39.84 5.34
3643 4011 1.777030 AAAATTGTCGCCGACGCACA 61.777 50.000 13.18 0.00 39.84 4.57
3644 4012 1.573829 AAATTGTCGCCGACGCACAT 61.574 50.000 13.18 0.00 39.84 3.21
3645 4013 1.966493 AATTGTCGCCGACGCACATC 61.966 55.000 13.18 0.00 39.84 3.06
3646 4014 3.850095 TTGTCGCCGACGCACATCA 62.850 57.895 13.18 0.00 39.84 3.07
3647 4015 3.109547 GTCGCCGACGCACATCAA 61.110 61.111 0.00 0.00 39.84 2.57
3648 4016 2.809174 TCGCCGACGCACATCAAG 60.809 61.111 0.00 0.00 39.84 3.02
3649 4017 3.853330 CGCCGACGCACATCAAGG 61.853 66.667 0.00 0.00 34.03 3.61
3650 4018 2.434185 GCCGACGCACATCAAGGA 60.434 61.111 0.00 0.00 34.03 3.36
3651 4019 2.456119 GCCGACGCACATCAAGGAG 61.456 63.158 0.00 0.00 34.03 3.69
3652 4020 1.215382 CCGACGCACATCAAGGAGA 59.785 57.895 0.00 0.00 0.00 3.71
3653 4021 0.179100 CCGACGCACATCAAGGAGAT 60.179 55.000 0.00 0.00 37.48 2.75
3663 4031 3.853355 ATCAAGGAGATGGGTTAGCAG 57.147 47.619 0.00 0.00 35.06 4.24
3664 4032 2.551270 TCAAGGAGATGGGTTAGCAGT 58.449 47.619 0.00 0.00 0.00 4.40
3665 4033 2.501723 TCAAGGAGATGGGTTAGCAGTC 59.498 50.000 0.00 0.00 0.00 3.51
3666 4034 1.501582 AGGAGATGGGTTAGCAGTCC 58.498 55.000 0.00 0.00 0.00 3.85
3667 4035 1.204146 GGAGATGGGTTAGCAGTCCA 58.796 55.000 0.00 0.00 34.79 4.02
3668 4036 1.559682 GGAGATGGGTTAGCAGTCCAA 59.440 52.381 0.00 0.00 33.90 3.53
3669 4037 2.026262 GGAGATGGGTTAGCAGTCCAAA 60.026 50.000 0.00 0.00 33.90 3.28
3670 4038 3.010420 GAGATGGGTTAGCAGTCCAAAC 58.990 50.000 0.00 0.00 33.90 2.93
3671 4039 2.375174 AGATGGGTTAGCAGTCCAAACA 59.625 45.455 0.00 0.00 33.90 2.83
3672 4040 2.270352 TGGGTTAGCAGTCCAAACAG 57.730 50.000 0.00 0.00 0.00 3.16
3673 4041 1.771854 TGGGTTAGCAGTCCAAACAGA 59.228 47.619 0.00 0.00 0.00 3.41
3674 4042 2.152016 GGGTTAGCAGTCCAAACAGAC 58.848 52.381 0.00 0.00 37.01 3.51
3675 4043 1.798813 GGTTAGCAGTCCAAACAGACG 59.201 52.381 0.00 0.00 41.83 4.18
3676 4044 1.194772 GTTAGCAGTCCAAACAGACGC 59.805 52.381 0.00 0.00 41.83 5.19
3677 4045 0.666274 TAGCAGTCCAAACAGACGCG 60.666 55.000 3.53 3.53 41.83 6.01
3678 4046 2.551270 CAGTCCAAACAGACGCGC 59.449 61.111 5.73 0.00 41.83 6.86
3679 4047 3.036084 AGTCCAAACAGACGCGCG 61.036 61.111 30.96 30.96 41.83 6.86
3680 4048 4.719616 GTCCAAACAGACGCGCGC 62.720 66.667 32.58 23.91 0.00 6.86
3702 4070 4.021925 GCACCTCGTGAAGCCCCT 62.022 66.667 0.00 0.00 35.23 4.79
3703 4071 2.266055 CACCTCGTGAAGCCCCTC 59.734 66.667 0.00 0.00 35.23 4.30
3704 4072 3.003763 ACCTCGTGAAGCCCCTCC 61.004 66.667 0.00 0.00 0.00 4.30
3705 4073 3.003173 CCTCGTGAAGCCCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
3706 4074 2.266055 CTCGTGAAGCCCCTCCAC 59.734 66.667 0.00 0.00 0.00 4.02
3707 4075 3.316573 CTCGTGAAGCCCCTCCACC 62.317 68.421 0.00 0.00 0.00 4.61
3708 4076 3.636231 CGTGAAGCCCCTCCACCA 61.636 66.667 0.00 0.00 0.00 4.17
3709 4077 2.352805 GTGAAGCCCCTCCACCAG 59.647 66.667 0.00 0.00 0.00 4.00
3710 4078 3.650950 TGAAGCCCCTCCACCAGC 61.651 66.667 0.00 0.00 0.00 4.85
3711 4079 4.785453 GAAGCCCCTCCACCAGCG 62.785 72.222 0.00 0.00 0.00 5.18
3717 4085 4.463879 CCTCCACCAGCGCCTCTG 62.464 72.222 2.29 0.00 42.49 3.35
3721 4089 4.383861 CACCAGCGCCTCTGCTCA 62.384 66.667 2.29 0.00 45.23 4.26
3722 4090 4.385405 ACCAGCGCCTCTGCTCAC 62.385 66.667 2.29 0.00 45.23 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.581213 ACCAAACATGTCTATTTTCTGAACA 57.419 32.000 0.00 0.00 0.00 3.18
86 87 7.818446 TCAGCATCTTCAGAGCATATTATCTTC 59.182 37.037 0.00 0.00 0.00 2.87
87 88 7.677892 TCAGCATCTTCAGAGCATATTATCTT 58.322 34.615 0.00 0.00 0.00 2.40
118 121 1.479323 CGACCGATTTCTTAGGGTGGA 59.521 52.381 0.00 0.00 31.66 4.02
133 136 1.148310 GTGGCCATATGATTCGACCG 58.852 55.000 9.72 0.00 0.00 4.79
149 152 0.756294 ATCATGCATGCAATGGGTGG 59.244 50.000 26.68 8.41 46.86 4.61
188 191 9.848238 AGATGAATTAATTATTTGGGATGGGAT 57.152 29.630 0.00 0.00 0.00 3.85
225 228 6.866248 GGAACCATTCGATTTATGTGTTTGTT 59.134 34.615 0.00 0.00 0.00 2.83
226 229 6.015856 TGGAACCATTCGATTTATGTGTTTGT 60.016 34.615 0.00 0.00 0.00 2.83
231 234 5.278463 GGGATGGAACCATTCGATTTATGTG 60.278 44.000 7.79 0.00 36.70 3.21
236 239 3.380471 TGGGATGGAACCATTCGATTT 57.620 42.857 7.79 0.00 36.70 2.17
289 293 2.819608 CCTATGTGTTTGGTTGGAGGTG 59.180 50.000 0.00 0.00 0.00 4.00
294 298 1.923356 AGCCCTATGTGTTTGGTTGG 58.077 50.000 0.00 0.00 0.00 3.77
332 336 3.186283 TGGCCTCTTATTTGGGTCAGTA 58.814 45.455 3.32 0.00 30.70 2.74
335 339 1.992557 ACTGGCCTCTTATTTGGGTCA 59.007 47.619 3.32 0.00 33.44 4.02
359 363 6.397272 TGTTTGTTCTGTGAGCATTCTTTTT 58.603 32.000 0.00 0.00 0.00 1.94
367 371 5.122519 TCTATGTTGTTTGTTCTGTGAGCA 58.877 37.500 0.00 0.00 0.00 4.26
420 424 4.703379 TTGTGGCCATTGGATTTTTCTT 57.297 36.364 9.72 0.00 0.00 2.52
481 485 6.095377 CGGAGAAAGTACAATTTACCTACGT 58.905 40.000 0.00 0.00 0.00 3.57
499 503 5.106555 ACGACGAGTAATTTAGAACGGAGAA 60.107 40.000 0.00 0.00 0.00 2.87
500 504 4.393062 ACGACGAGTAATTTAGAACGGAGA 59.607 41.667 0.00 0.00 0.00 3.71
561 623 2.027561 TGACCCGTACCAAAATCCTCTG 60.028 50.000 0.00 0.00 0.00 3.35
585 649 1.194781 TGTTGCTCAGTCTCTCCCCC 61.195 60.000 0.00 0.00 0.00 5.40
689 754 8.767085 ACTTGCTGTTTATGATGTTTTGATTTG 58.233 29.630 0.00 0.00 0.00 2.32
725 790 1.890174 GTTGATTTTGGGGCTCGGG 59.110 57.895 0.00 0.00 0.00 5.14
743 808 1.402968 CAGGATGGTTTGATTCTGGCG 59.597 52.381 0.00 0.00 0.00 5.69
765 835 1.723608 CGCGGCCATTATTTCTGCCA 61.724 55.000 2.24 0.00 44.22 4.92
766 836 1.008538 CGCGGCCATTATTTCTGCC 60.009 57.895 2.24 0.00 40.54 4.85
770 840 2.725815 GCGCGCGGCCATTATTTC 60.726 61.111 33.06 6.44 34.80 2.17
839 909 4.871993 ACGGTACAGTAGTATTGACGAG 57.128 45.455 0.00 1.13 31.84 4.18
851 1086 1.474077 GGACCAACGATACGGTACAGT 59.526 52.381 3.62 3.62 36.02 3.55
852 1087 1.532505 CGGACCAACGATACGGTACAG 60.533 57.143 0.00 0.00 35.67 2.74
853 1088 0.451383 CGGACCAACGATACGGTACA 59.549 55.000 0.00 0.00 35.67 2.90
858 1093 0.804544 ATGCACGGACCAACGATACG 60.805 55.000 0.00 0.00 37.61 3.06
897 1132 0.383590 ATGGATCTGAGCTCGTGACG 59.616 55.000 9.64 0.00 0.00 4.35
993 1233 1.965754 GAGGAGGCTTCATGGTCGCT 61.966 60.000 0.00 0.00 0.00 4.93
1200 1458 2.284699 AGGGAGAGGTTGGACGGG 60.285 66.667 0.00 0.00 0.00 5.28
1202 1460 2.359967 GGGAGGGAGAGGTTGGACG 61.360 68.421 0.00 0.00 0.00 4.79
1395 1653 2.202570 CGGTAGCCGTCGTTCCAG 60.203 66.667 0.00 0.00 42.73 3.86
1647 1905 2.038975 TTCTCCTCGGGGTCCCTG 59.961 66.667 10.99 10.99 0.00 4.45
1689 1947 0.591170 AAAGGTTGCCGTCGATGTTG 59.409 50.000 3.52 0.00 0.00 3.33
1734 1992 3.506455 TGTTCTTCCTGTAGTCGAGAAGG 59.494 47.826 9.24 3.77 37.05 3.46
1748 2006 1.203994 TCCGGACGATCTTGTTCTTCC 59.796 52.381 0.00 0.00 32.20 3.46
1941 2199 2.203070 ATCTTGATCCGCCCGCAC 60.203 61.111 0.00 0.00 0.00 5.34
2109 2367 2.102749 TACATGACGGGCGCGTAC 59.897 61.111 29.59 21.12 0.00 3.67
2403 2661 1.734655 ACTGGAGGGTCATTGACTGT 58.265 50.000 16.02 4.16 32.47 3.55
2404 2662 2.704572 GAACTGGAGGGTCATTGACTG 58.295 52.381 16.02 3.66 32.47 3.51
2406 2664 1.275291 TCGAACTGGAGGGTCATTGAC 59.725 52.381 8.34 8.34 0.00 3.18
2418 2676 2.743928 GCTGGCACCTCGAACTGG 60.744 66.667 0.00 0.00 0.00 4.00
2442 2700 3.132139 CGCGGTCTCCTTCTCGGA 61.132 66.667 0.00 0.00 40.30 4.55
2484 2742 4.803426 GACACCAGGCCGAGAGCG 62.803 72.222 0.00 0.00 45.17 5.03
2543 2801 1.088340 CAGCAGCCTCTGGTTCATCG 61.088 60.000 0.00 0.00 40.40 3.84
2835 3095 1.204062 CACATTCGTGCGTGGTGAC 59.796 57.895 0.00 0.00 36.06 3.67
2836 3096 0.943835 CTCACATTCGTGCGTGGTGA 60.944 55.000 12.12 12.12 43.28 4.02
2837 3097 1.492873 CTCACATTCGTGCGTGGTG 59.507 57.895 0.00 0.00 43.28 4.17
2931 3191 1.599606 TTCCGCTCTCTCTGTCCTGC 61.600 60.000 0.00 0.00 0.00 4.85
2948 3212 2.143122 TCACACACATTCTTCGCCTTC 58.857 47.619 0.00 0.00 0.00 3.46
2963 3227 3.445450 TGAATCTAGCCTCACTCTCACAC 59.555 47.826 0.00 0.00 0.00 3.82
3002 3314 4.293648 CGTCACGTGTGCCCCTCA 62.294 66.667 16.51 0.00 0.00 3.86
3044 3362 3.801997 CACCTAGGCCAGCCAGGG 61.802 72.222 22.84 19.42 38.13 4.45
3045 3363 4.496336 GCACCTAGGCCAGCCAGG 62.496 72.222 19.48 19.48 39.04 4.45
3046 3364 2.563013 AATGCACCTAGGCCAGCCAG 62.563 60.000 9.30 6.32 38.92 4.85
3047 3365 2.153898 AAATGCACCTAGGCCAGCCA 62.154 55.000 9.30 0.00 38.92 4.75
3048 3366 1.380380 AAATGCACCTAGGCCAGCC 60.380 57.895 9.30 0.00 0.00 4.85
3049 3367 1.669999 CCAAATGCACCTAGGCCAGC 61.670 60.000 9.30 11.59 0.00 4.85
3079 3422 2.167861 GCTGGATCGCGACACCTTC 61.168 63.158 26.61 15.08 0.00 3.46
3080 3423 2.125512 GCTGGATCGCGACACCTT 60.126 61.111 26.61 7.26 0.00 3.50
3081 3424 4.148825 GGCTGGATCGCGACACCT 62.149 66.667 26.61 7.64 0.00 4.00
3127 3491 3.522731 CGCCGGTCTCTCCCAGAG 61.523 72.222 1.90 0.00 43.64 3.35
3274 3642 0.530744 TACTCGGCAGTACCAAGCTG 59.469 55.000 5.31 5.31 39.03 4.24
3275 3643 1.204941 CTTACTCGGCAGTACCAAGCT 59.795 52.381 3.07 0.00 39.03 3.74
3276 3644 1.203994 TCTTACTCGGCAGTACCAAGC 59.796 52.381 0.00 0.00 39.03 4.01
3277 3645 2.735762 GCTCTTACTCGGCAGTACCAAG 60.736 54.545 0.00 0.00 39.03 3.61
3278 3646 1.203994 GCTCTTACTCGGCAGTACCAA 59.796 52.381 0.00 0.00 39.03 3.67
3279 3647 0.815734 GCTCTTACTCGGCAGTACCA 59.184 55.000 0.00 0.00 39.03 3.25
3280 3648 0.815734 TGCTCTTACTCGGCAGTACC 59.184 55.000 0.00 0.00 34.64 3.34
3281 3649 2.094649 ACTTGCTCTTACTCGGCAGTAC 60.095 50.000 0.00 0.00 34.64 2.73
3282 3650 2.168496 ACTTGCTCTTACTCGGCAGTA 58.832 47.619 0.00 0.00 37.28 2.74
3283 3651 0.969894 ACTTGCTCTTACTCGGCAGT 59.030 50.000 0.00 0.00 37.28 4.40
3284 3652 2.941453 TACTTGCTCTTACTCGGCAG 57.059 50.000 0.00 0.00 37.28 4.85
3285 3653 3.887621 ATTACTTGCTCTTACTCGGCA 57.112 42.857 0.00 0.00 0.00 5.69
3286 3654 4.745620 CCTTATTACTTGCTCTTACTCGGC 59.254 45.833 0.00 0.00 0.00 5.54
3287 3655 4.745620 GCCTTATTACTTGCTCTTACTCGG 59.254 45.833 0.00 0.00 0.00 4.63
3288 3656 5.593010 AGCCTTATTACTTGCTCTTACTCG 58.407 41.667 0.00 0.00 0.00 4.18
3296 3664 4.764172 CTGAGTGAGCCTTATTACTTGCT 58.236 43.478 0.00 0.00 36.62 3.91
3297 3665 3.311048 GCTGAGTGAGCCTTATTACTTGC 59.689 47.826 0.00 0.00 42.54 4.01
3309 3677 3.122145 GCTTATAGCCAGCTGAGTGAGC 61.122 54.545 17.39 9.76 41.04 4.26
3310 3678 2.753296 GCTTATAGCCAGCTGAGTGAG 58.247 52.381 17.39 6.37 34.48 3.51
3311 3679 2.898729 GCTTATAGCCAGCTGAGTGA 57.101 50.000 17.39 0.00 34.48 3.41
3322 3690 1.138266 TGACGTGGAAGGGCTTATAGC 59.862 52.381 0.00 0.00 41.46 2.97
3323 3691 2.803492 GCTGACGTGGAAGGGCTTATAG 60.803 54.545 0.00 0.00 0.00 1.31
3324 3692 1.138266 GCTGACGTGGAAGGGCTTATA 59.862 52.381 0.00 0.00 0.00 0.98
3325 3693 0.107654 GCTGACGTGGAAGGGCTTAT 60.108 55.000 0.00 0.00 0.00 1.73
3326 3694 1.295423 GCTGACGTGGAAGGGCTTA 59.705 57.895 0.00 0.00 0.00 3.09
3327 3695 2.032681 GCTGACGTGGAAGGGCTT 59.967 61.111 0.00 0.00 0.00 4.35
3328 3696 4.021925 GGCTGACGTGGAAGGGCT 62.022 66.667 0.00 0.00 0.00 5.19
3329 3697 3.842925 TTGGCTGACGTGGAAGGGC 62.843 63.158 0.00 0.00 0.00 5.19
3330 3698 0.609131 ATTTGGCTGACGTGGAAGGG 60.609 55.000 0.00 0.00 0.00 3.95
3331 3699 0.804989 GATTTGGCTGACGTGGAAGG 59.195 55.000 0.00 0.00 0.00 3.46
3332 3700 1.197721 GTGATTTGGCTGACGTGGAAG 59.802 52.381 0.00 0.00 0.00 3.46
3333 3701 1.234821 GTGATTTGGCTGACGTGGAA 58.765 50.000 0.00 0.00 0.00 3.53
3334 3702 0.107643 TGTGATTTGGCTGACGTGGA 59.892 50.000 0.00 0.00 0.00 4.02
3335 3703 1.131126 GATGTGATTTGGCTGACGTGG 59.869 52.381 0.00 0.00 0.00 4.94
3336 3704 2.079158 AGATGTGATTTGGCTGACGTG 58.921 47.619 0.00 0.00 0.00 4.49
3337 3705 2.079158 CAGATGTGATTTGGCTGACGT 58.921 47.619 0.00 0.00 0.00 4.34
3338 3706 1.399440 CCAGATGTGATTTGGCTGACG 59.601 52.381 0.00 0.00 0.00 4.35
3339 3707 2.681848 CTCCAGATGTGATTTGGCTGAC 59.318 50.000 0.00 0.00 31.94 3.51
3340 3708 2.356432 CCTCCAGATGTGATTTGGCTGA 60.356 50.000 0.00 0.00 31.94 4.26
3341 3709 2.022195 CCTCCAGATGTGATTTGGCTG 58.978 52.381 0.00 0.00 31.94 4.85
3342 3710 1.064166 CCCTCCAGATGTGATTTGGCT 60.064 52.381 0.00 0.00 31.94 4.75
3343 3711 1.064463 TCCCTCCAGATGTGATTTGGC 60.064 52.381 0.00 0.00 31.94 4.52
3344 3712 3.054139 TCTTCCCTCCAGATGTGATTTGG 60.054 47.826 0.00 0.00 0.00 3.28
3345 3713 4.080695 TCTCTTCCCTCCAGATGTGATTTG 60.081 45.833 0.00 0.00 0.00 2.32
3346 3714 4.107072 TCTCTTCCCTCCAGATGTGATTT 58.893 43.478 0.00 0.00 0.00 2.17
3347 3715 3.729108 TCTCTTCCCTCCAGATGTGATT 58.271 45.455 0.00 0.00 0.00 2.57
3348 3716 3.411454 TCTCTTCCCTCCAGATGTGAT 57.589 47.619 0.00 0.00 0.00 3.06
3349 3717 2.928036 TCTCTTCCCTCCAGATGTGA 57.072 50.000 0.00 0.00 0.00 3.58
3350 3718 3.517100 TCTTTCTCTTCCCTCCAGATGTG 59.483 47.826 0.00 0.00 0.00 3.21
3351 3719 3.774216 CTCTTTCTCTTCCCTCCAGATGT 59.226 47.826 0.00 0.00 0.00 3.06
3352 3720 3.134442 CCTCTTTCTCTTCCCTCCAGATG 59.866 52.174 0.00 0.00 0.00 2.90
3353 3721 3.383223 CCTCTTTCTCTTCCCTCCAGAT 58.617 50.000 0.00 0.00 0.00 2.90
3354 3722 2.560841 CCCTCTTTCTCTTCCCTCCAGA 60.561 54.545 0.00 0.00 0.00 3.86
3355 3723 1.836802 CCCTCTTTCTCTTCCCTCCAG 59.163 57.143 0.00 0.00 0.00 3.86
3356 3724 1.437149 TCCCTCTTTCTCTTCCCTCCA 59.563 52.381 0.00 0.00 0.00 3.86
3357 3725 2.115427 CTCCCTCTTTCTCTTCCCTCC 58.885 57.143 0.00 0.00 0.00 4.30
3358 3726 3.031013 CTCTCCCTCTTTCTCTTCCCTC 58.969 54.545 0.00 0.00 0.00 4.30
3359 3727 2.657459 TCTCTCCCTCTTTCTCTTCCCT 59.343 50.000 0.00 0.00 0.00 4.20
3360 3728 3.031013 CTCTCTCCCTCTTTCTCTTCCC 58.969 54.545 0.00 0.00 0.00 3.97
3361 3729 3.976015 TCTCTCTCCCTCTTTCTCTTCC 58.024 50.000 0.00 0.00 0.00 3.46
3362 3730 4.142160 GCTTCTCTCTCCCTCTTTCTCTTC 60.142 50.000 0.00 0.00 0.00 2.87
3363 3731 3.769300 GCTTCTCTCTCCCTCTTTCTCTT 59.231 47.826 0.00 0.00 0.00 2.85
3364 3732 3.365472 GCTTCTCTCTCCCTCTTTCTCT 58.635 50.000 0.00 0.00 0.00 3.10
3365 3733 2.099098 CGCTTCTCTCTCCCTCTTTCTC 59.901 54.545 0.00 0.00 0.00 2.87
3366 3734 2.099405 CGCTTCTCTCTCCCTCTTTCT 58.901 52.381 0.00 0.00 0.00 2.52
3367 3735 2.096248 TCGCTTCTCTCTCCCTCTTTC 58.904 52.381 0.00 0.00 0.00 2.62
3368 3736 2.223803 TCGCTTCTCTCTCCCTCTTT 57.776 50.000 0.00 0.00 0.00 2.52
3369 3737 1.822371 GTTCGCTTCTCTCTCCCTCTT 59.178 52.381 0.00 0.00 0.00 2.85
3370 3738 1.470051 GTTCGCTTCTCTCTCCCTCT 58.530 55.000 0.00 0.00 0.00 3.69
3371 3739 0.099791 CGTTCGCTTCTCTCTCCCTC 59.900 60.000 0.00 0.00 0.00 4.30
3372 3740 1.316706 CCGTTCGCTTCTCTCTCCCT 61.317 60.000 0.00 0.00 0.00 4.20
3373 3741 1.139947 CCGTTCGCTTCTCTCTCCC 59.860 63.158 0.00 0.00 0.00 4.30
3374 3742 1.139947 CCCGTTCGCTTCTCTCTCC 59.860 63.158 0.00 0.00 0.00 3.71
3375 3743 1.517475 GCCCGTTCGCTTCTCTCTC 60.517 63.158 0.00 0.00 0.00 3.20
3376 3744 2.574399 GCCCGTTCGCTTCTCTCT 59.426 61.111 0.00 0.00 0.00 3.10
3377 3745 2.881352 CGCCCGTTCGCTTCTCTC 60.881 66.667 0.00 0.00 0.00 3.20
3386 3754 3.011760 CTTGACGAAGCGCCCGTTC 62.012 63.158 23.06 16.78 40.67 3.95
3387 3755 3.041940 CTTGACGAAGCGCCCGTT 61.042 61.111 23.06 3.36 40.67 4.44
3409 3777 2.124736 TATCTTGTGCCGCAGCCC 60.125 61.111 0.00 0.00 38.69 5.19
3410 3778 2.813179 CGTATCTTGTGCCGCAGCC 61.813 63.158 0.00 0.00 38.69 4.85
3411 3779 1.756375 CTCGTATCTTGTGCCGCAGC 61.756 60.000 0.00 0.00 40.48 5.25
3412 3780 0.179137 TCTCGTATCTTGTGCCGCAG 60.179 55.000 0.00 0.00 0.00 5.18
3413 3781 0.179137 CTCTCGTATCTTGTGCCGCA 60.179 55.000 0.00 0.00 0.00 5.69
3414 3782 1.483424 GCTCTCGTATCTTGTGCCGC 61.483 60.000 0.00 0.00 0.00 6.53
3415 3783 0.101399 AGCTCTCGTATCTTGTGCCG 59.899 55.000 0.00 0.00 0.00 5.69
3416 3784 2.301577 AAGCTCTCGTATCTTGTGCC 57.698 50.000 0.00 0.00 0.00 5.01
3417 3785 2.222908 GCAAAGCTCTCGTATCTTGTGC 60.223 50.000 0.00 0.00 0.00 4.57
3418 3786 2.028523 CGCAAAGCTCTCGTATCTTGTG 59.971 50.000 0.00 0.00 0.00 3.33
3419 3787 2.263077 CGCAAAGCTCTCGTATCTTGT 58.737 47.619 0.00 0.00 0.00 3.16
3420 3788 1.005557 GCGCAAAGCTCTCGTATCTTG 60.006 52.381 0.30 0.00 44.04 3.02
3421 3789 1.281899 GCGCAAAGCTCTCGTATCTT 58.718 50.000 0.30 0.00 44.04 2.40
3422 3790 2.964911 GCGCAAAGCTCTCGTATCT 58.035 52.632 0.30 0.00 44.04 1.98
3423 3791 1.491505 GGGCGCAAAGCTCTCGTATC 61.492 60.000 10.83 0.00 44.82 2.24
3424 3792 1.521681 GGGCGCAAAGCTCTCGTAT 60.522 57.895 10.83 0.00 44.82 3.06
3425 3793 2.125673 GGGCGCAAAGCTCTCGTA 60.126 61.111 10.83 0.00 44.82 3.43
3452 3820 4.914420 CTCTAGCGCTCGCCACGG 62.914 72.222 16.34 0.00 43.17 4.94
3500 3868 3.363844 AAGGAGAAGCGCGAGAGGC 62.364 63.158 12.10 0.00 38.69 4.70
3501 3869 1.226831 GAAGGAGAAGCGCGAGAGG 60.227 63.158 12.10 0.00 0.00 3.69
3502 3870 1.226831 GGAAGGAGAAGCGCGAGAG 60.227 63.158 12.10 0.00 0.00 3.20
3503 3871 1.658686 GAGGAAGGAGAAGCGCGAGA 61.659 60.000 12.10 0.00 0.00 4.04
3504 3872 1.226831 GAGGAAGGAGAAGCGCGAG 60.227 63.158 12.10 0.00 0.00 5.03
3505 3873 2.711922 GGAGGAAGGAGAAGCGCGA 61.712 63.158 12.10 0.00 0.00 5.87
3506 3874 2.202810 GGAGGAAGGAGAAGCGCG 60.203 66.667 0.00 0.00 0.00 6.86
3507 3875 0.461163 GAAGGAGGAAGGAGAAGCGC 60.461 60.000 0.00 0.00 0.00 5.92
3508 3876 0.179124 CGAAGGAGGAAGGAGAAGCG 60.179 60.000 0.00 0.00 0.00 4.68
3509 3877 0.461163 GCGAAGGAGGAAGGAGAAGC 60.461 60.000 0.00 0.00 0.00 3.86
3510 3878 0.179124 CGCGAAGGAGGAAGGAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
3511 3879 1.890894 CGCGAAGGAGGAAGGAGAA 59.109 57.895 0.00 0.00 0.00 2.87
3512 3880 2.711922 GCGCGAAGGAGGAAGGAGA 61.712 63.158 12.10 0.00 0.00 3.71
3513 3881 2.202810 GCGCGAAGGAGGAAGGAG 60.203 66.667 12.10 0.00 0.00 3.69
3514 3882 4.129737 CGCGCGAAGGAGGAAGGA 62.130 66.667 28.94 0.00 0.00 3.36
3517 3885 4.673298 TTGCGCGCGAAGGAGGAA 62.673 61.111 37.18 9.58 0.00 3.36
3518 3886 4.673298 TTTGCGCGCGAAGGAGGA 62.673 61.111 37.18 3.82 0.00 3.71
3519 3887 2.527547 ATTTTTGCGCGCGAAGGAGG 62.528 55.000 37.18 2.07 0.00 4.30
3520 3888 1.128147 GATTTTTGCGCGCGAAGGAG 61.128 55.000 37.18 2.99 0.00 3.69
3521 3889 1.154301 GATTTTTGCGCGCGAAGGA 60.154 52.632 37.18 23.73 0.00 3.36
3522 3890 1.398022 CTGATTTTTGCGCGCGAAGG 61.398 55.000 37.18 16.74 0.00 3.46
3523 3891 1.975741 CTGATTTTTGCGCGCGAAG 59.024 52.632 37.18 17.28 0.00 3.79
3524 3892 2.080062 GCTGATTTTTGCGCGCGAA 61.080 52.632 37.18 29.28 0.00 4.70
3525 3893 2.501650 GCTGATTTTTGCGCGCGA 60.502 55.556 37.18 23.83 0.00 5.87
3526 3894 2.491271 GAGCTGATTTTTGCGCGCG 61.491 57.895 28.44 28.44 0.00 6.86
3527 3895 2.491271 CGAGCTGATTTTTGCGCGC 61.491 57.895 27.26 27.26 44.11 6.86
3528 3896 3.654365 CGAGCTGATTTTTGCGCG 58.346 55.556 0.00 0.00 44.55 6.86
3529 3897 1.668253 GCACGAGCTGATTTTTGCGC 61.668 55.000 0.00 0.00 37.91 6.09
3530 3898 1.067199 GGCACGAGCTGATTTTTGCG 61.067 55.000 4.48 0.00 41.70 4.85
3531 3899 2.729378 GGCACGAGCTGATTTTTGC 58.271 52.632 4.48 0.00 41.70 3.68
3545 3913 2.437002 TATTTGGGGCGACGGCAC 60.437 61.111 23.66 21.00 43.79 5.01
3546 3914 2.124901 CTATTTGGGGCGACGGCA 60.125 61.111 23.66 2.29 42.47 5.69
3547 3915 3.583086 GCTATTTGGGGCGACGGC 61.583 66.667 13.84 13.84 38.90 5.68
3548 3916 1.436983 GAAGCTATTTGGGGCGACGG 61.437 60.000 0.00 0.00 0.00 4.79
3549 3917 1.436983 GGAAGCTATTTGGGGCGACG 61.437 60.000 0.00 0.00 0.00 5.12
3550 3918 0.107165 AGGAAGCTATTTGGGGCGAC 60.107 55.000 0.00 0.00 0.00 5.19
3551 3919 0.180406 GAGGAAGCTATTTGGGGCGA 59.820 55.000 0.00 0.00 0.00 5.54
3552 3920 1.160329 CGAGGAAGCTATTTGGGGCG 61.160 60.000 0.00 0.00 0.00 6.13
3553 3921 1.448119 GCGAGGAAGCTATTTGGGGC 61.448 60.000 0.00 0.00 0.00 5.80
3554 3922 1.160329 CGCGAGGAAGCTATTTGGGG 61.160 60.000 0.00 0.00 34.40 4.96
3555 3923 1.776034 GCGCGAGGAAGCTATTTGGG 61.776 60.000 12.10 0.00 34.40 4.12
3556 3924 1.643832 GCGCGAGGAAGCTATTTGG 59.356 57.895 12.10 0.00 34.40 3.28
3557 3925 1.089481 TGGCGCGAGGAAGCTATTTG 61.089 55.000 12.10 0.00 34.40 2.32
3558 3926 0.392461 TTGGCGCGAGGAAGCTATTT 60.392 50.000 12.10 0.00 34.40 1.40
3559 3927 0.392461 TTTGGCGCGAGGAAGCTATT 60.392 50.000 12.10 0.00 34.40 1.73
3560 3928 0.179045 ATTTGGCGCGAGGAAGCTAT 60.179 50.000 12.10 0.00 34.40 2.97
3561 3929 0.810031 GATTTGGCGCGAGGAAGCTA 60.810 55.000 12.10 0.00 34.40 3.32
3562 3930 2.045926 ATTTGGCGCGAGGAAGCT 60.046 55.556 12.10 0.00 34.40 3.74
3563 3931 1.922135 TTGATTTGGCGCGAGGAAGC 61.922 55.000 12.10 3.43 0.00 3.86
3564 3932 0.097674 CTTGATTTGGCGCGAGGAAG 59.902 55.000 12.10 0.00 0.00 3.46
3565 3933 1.922135 GCTTGATTTGGCGCGAGGAA 61.922 55.000 12.10 0.00 0.00 3.36
3566 3934 2.398554 GCTTGATTTGGCGCGAGGA 61.399 57.895 12.10 0.00 0.00 3.71
3567 3935 2.100991 GCTTGATTTGGCGCGAGG 59.899 61.111 12.10 0.00 0.00 4.63
3568 3936 1.926511 AAGGCTTGATTTGGCGCGAG 61.927 55.000 12.10 0.00 35.01 5.03
3569 3937 1.922135 GAAGGCTTGATTTGGCGCGA 61.922 55.000 12.10 0.00 35.01 5.87
3570 3938 1.514873 GAAGGCTTGATTTGGCGCG 60.515 57.895 3.46 0.00 35.01 6.86
3571 3939 1.153765 GGAAGGCTTGATTTGGCGC 60.154 57.895 3.46 0.00 35.01 6.53
3572 3940 0.602562 TTGGAAGGCTTGATTTGGCG 59.397 50.000 3.46 0.00 35.01 5.69
3573 3941 2.837532 TTTGGAAGGCTTGATTTGGC 57.162 45.000 3.46 0.00 0.00 4.52
3574 3942 4.696877 GGAAATTTGGAAGGCTTGATTTGG 59.303 41.667 3.46 0.00 0.00 3.28
3575 3943 4.696877 GGGAAATTTGGAAGGCTTGATTTG 59.303 41.667 3.46 0.00 0.00 2.32
3576 3944 4.263462 GGGGAAATTTGGAAGGCTTGATTT 60.263 41.667 3.46 5.88 0.00 2.17
3577 3945 3.264193 GGGGAAATTTGGAAGGCTTGATT 59.736 43.478 3.46 0.00 0.00 2.57
3578 3946 2.840038 GGGGAAATTTGGAAGGCTTGAT 59.160 45.455 3.46 0.00 0.00 2.57
3579 3947 2.256306 GGGGAAATTTGGAAGGCTTGA 58.744 47.619 3.46 0.00 0.00 3.02
3580 3948 1.977129 TGGGGAAATTTGGAAGGCTTG 59.023 47.619 3.46 0.00 0.00 4.01
3581 3949 2.414250 TGGGGAAATTTGGAAGGCTT 57.586 45.000 0.00 0.00 0.00 4.35
3582 3950 2.414250 TTGGGGAAATTTGGAAGGCT 57.586 45.000 0.00 0.00 0.00 4.58
3583 3951 3.609853 GATTTGGGGAAATTTGGAAGGC 58.390 45.455 0.00 0.00 0.00 4.35
3584 3952 3.860641 CGATTTGGGGAAATTTGGAAGG 58.139 45.455 0.00 0.00 0.00 3.46
3585 3953 3.261580 GCGATTTGGGGAAATTTGGAAG 58.738 45.455 0.00 0.00 0.00 3.46
3586 3954 2.027653 GGCGATTTGGGGAAATTTGGAA 60.028 45.455 0.00 0.00 0.00 3.53
3587 3955 1.552792 GGCGATTTGGGGAAATTTGGA 59.447 47.619 0.00 0.00 0.00 3.53
3588 3956 1.277557 TGGCGATTTGGGGAAATTTGG 59.722 47.619 0.00 0.00 0.00 3.28
3589 3957 2.345876 GTGGCGATTTGGGGAAATTTG 58.654 47.619 0.00 0.00 0.00 2.32
3590 3958 1.277842 GGTGGCGATTTGGGGAAATTT 59.722 47.619 0.00 0.00 0.00 1.82
3591 3959 0.901827 GGTGGCGATTTGGGGAAATT 59.098 50.000 0.00 0.00 0.00 1.82
3592 3960 0.041090 AGGTGGCGATTTGGGGAAAT 59.959 50.000 0.00 0.00 0.00 2.17
3593 3961 0.610785 GAGGTGGCGATTTGGGGAAA 60.611 55.000 0.00 0.00 0.00 3.13
3594 3962 1.001393 GAGGTGGCGATTTGGGGAA 60.001 57.895 0.00 0.00 0.00 3.97
3595 3963 1.910580 GAGAGGTGGCGATTTGGGGA 61.911 60.000 0.00 0.00 0.00 4.81
3596 3964 1.452108 GAGAGGTGGCGATTTGGGG 60.452 63.158 0.00 0.00 0.00 4.96
3597 3965 1.452108 GGAGAGGTGGCGATTTGGG 60.452 63.158 0.00 0.00 0.00 4.12
3598 3966 1.452108 GGGAGAGGTGGCGATTTGG 60.452 63.158 0.00 0.00 0.00 3.28
3599 3967 1.815421 CGGGAGAGGTGGCGATTTG 60.815 63.158 0.00 0.00 0.00 2.32
3600 3968 1.550130 TTCGGGAGAGGTGGCGATTT 61.550 55.000 0.00 0.00 41.75 2.17
3601 3969 1.987855 TTCGGGAGAGGTGGCGATT 60.988 57.895 0.00 0.00 41.75 3.34
3602 3970 2.363795 TTCGGGAGAGGTGGCGAT 60.364 61.111 0.00 0.00 41.75 4.58
3603 3971 3.379445 GTTCGGGAGAGGTGGCGA 61.379 66.667 0.00 0.00 41.75 5.54
3604 3972 4.452733 GGTTCGGGAGAGGTGGCG 62.453 72.222 0.00 0.00 41.75 5.69
3605 3973 4.097361 GGGTTCGGGAGAGGTGGC 62.097 72.222 0.00 0.00 41.75 5.01
3606 3974 0.616679 TTAGGGTTCGGGAGAGGTGG 60.617 60.000 0.00 0.00 41.75 4.61
3607 3975 1.272807 TTTAGGGTTCGGGAGAGGTG 58.727 55.000 0.00 0.00 41.75 4.00
3608 3976 2.034436 TTTTAGGGTTCGGGAGAGGT 57.966 50.000 0.00 0.00 41.75 3.85
3609 3977 3.279434 CAATTTTAGGGTTCGGGAGAGG 58.721 50.000 0.00 0.00 41.75 3.69
3610 3978 3.939592 GACAATTTTAGGGTTCGGGAGAG 59.060 47.826 0.00 0.00 41.75 3.20
3611 3979 3.618019 CGACAATTTTAGGGTTCGGGAGA 60.618 47.826 0.00 0.00 0.00 3.71
3612 3980 2.676342 CGACAATTTTAGGGTTCGGGAG 59.324 50.000 0.00 0.00 0.00 4.30
3613 3981 2.702261 CGACAATTTTAGGGTTCGGGA 58.298 47.619 0.00 0.00 0.00 5.14
3614 3982 1.131693 GCGACAATTTTAGGGTTCGGG 59.868 52.381 0.00 0.00 0.00 5.14
3615 3983 1.131693 GGCGACAATTTTAGGGTTCGG 59.868 52.381 0.00 0.00 0.00 4.30
3616 3984 1.201987 CGGCGACAATTTTAGGGTTCG 60.202 52.381 0.00 0.00 0.00 3.95
3617 3985 2.078392 TCGGCGACAATTTTAGGGTTC 58.922 47.619 4.99 0.00 0.00 3.62
3618 3986 1.808343 GTCGGCGACAATTTTAGGGTT 59.192 47.619 33.07 0.00 32.09 4.11
3619 3987 1.445871 GTCGGCGACAATTTTAGGGT 58.554 50.000 33.07 0.00 32.09 4.34
3620 3988 0.372334 CGTCGGCGACAATTTTAGGG 59.628 55.000 35.62 15.11 41.33 3.53
3621 3989 0.247537 GCGTCGGCGACAATTTTAGG 60.248 55.000 35.62 19.61 41.33 2.69
3622 3990 0.440758 TGCGTCGGCGACAATTTTAG 59.559 50.000 35.62 20.30 44.10 1.85
3623 3991 0.164217 GTGCGTCGGCGACAATTTTA 59.836 50.000 35.62 14.38 44.10 1.52
3624 3992 1.082366 GTGCGTCGGCGACAATTTT 60.082 52.632 35.62 0.00 44.10 1.82
3625 3993 1.573829 ATGTGCGTCGGCGACAATTT 61.574 50.000 35.62 15.81 44.10 1.82
3626 3994 1.966493 GATGTGCGTCGGCGACAATT 61.966 55.000 35.62 17.45 44.10 2.32
3627 3995 2.434185 ATGTGCGTCGGCGACAAT 60.434 55.556 35.62 21.26 44.10 2.71
3628 3996 3.109547 GATGTGCGTCGGCGACAA 61.110 61.111 35.62 22.51 44.10 3.18
3629 3997 3.850095 TTGATGTGCGTCGGCGACA 62.850 57.895 35.62 20.12 44.10 4.35
3630 3998 3.071459 CTTGATGTGCGTCGGCGAC 62.071 63.158 29.06 29.06 44.10 5.19
3631 3999 2.809174 CTTGATGTGCGTCGGCGA 60.809 61.111 16.53 4.99 44.10 5.54
3632 4000 3.853330 CCTTGATGTGCGTCGGCG 61.853 66.667 4.29 4.29 44.10 6.46
3633 4001 2.434185 TCCTTGATGTGCGTCGGC 60.434 61.111 0.00 0.00 40.52 5.54
3634 4002 0.179100 ATCTCCTTGATGTGCGTCGG 60.179 55.000 0.00 0.00 33.43 4.79
3635 4003 0.926155 CATCTCCTTGATGTGCGTCG 59.074 55.000 0.00 0.00 45.55 5.12
3643 4011 3.118531 ACTGCTAACCCATCTCCTTGAT 58.881 45.455 0.00 0.00 35.40 2.57
3644 4012 2.501723 GACTGCTAACCCATCTCCTTGA 59.498 50.000 0.00 0.00 0.00 3.02
3645 4013 2.420687 GGACTGCTAACCCATCTCCTTG 60.421 54.545 0.00 0.00 0.00 3.61
3646 4014 1.840635 GGACTGCTAACCCATCTCCTT 59.159 52.381 0.00 0.00 0.00 3.36
3647 4015 1.273838 TGGACTGCTAACCCATCTCCT 60.274 52.381 0.00 0.00 0.00 3.69
3648 4016 1.204146 TGGACTGCTAACCCATCTCC 58.796 55.000 0.00 0.00 0.00 3.71
3649 4017 3.010420 GTTTGGACTGCTAACCCATCTC 58.990 50.000 0.00 0.00 0.00 2.75
3650 4018 2.375174 TGTTTGGACTGCTAACCCATCT 59.625 45.455 0.00 0.00 0.00 2.90
3651 4019 2.749621 CTGTTTGGACTGCTAACCCATC 59.250 50.000 0.00 0.00 0.00 3.51
3652 4020 2.375174 TCTGTTTGGACTGCTAACCCAT 59.625 45.455 0.00 0.00 0.00 4.00
3653 4021 1.771854 TCTGTTTGGACTGCTAACCCA 59.228 47.619 0.00 0.00 0.00 4.51
3654 4022 2.152016 GTCTGTTTGGACTGCTAACCC 58.848 52.381 0.00 0.00 33.81 4.11
3655 4023 1.798813 CGTCTGTTTGGACTGCTAACC 59.201 52.381 0.00 0.00 34.38 2.85
3656 4024 1.194772 GCGTCTGTTTGGACTGCTAAC 59.805 52.381 0.00 0.00 35.04 2.34
3657 4025 1.508632 GCGTCTGTTTGGACTGCTAA 58.491 50.000 0.00 0.00 35.04 3.09
3658 4026 0.666274 CGCGTCTGTTTGGACTGCTA 60.666 55.000 0.00 0.00 35.41 3.49
3659 4027 1.956170 CGCGTCTGTTTGGACTGCT 60.956 57.895 0.00 0.00 35.41 4.24
3660 4028 2.551270 CGCGTCTGTTTGGACTGC 59.449 61.111 0.00 0.00 34.38 4.40
3661 4029 2.551270 GCGCGTCTGTTTGGACTG 59.449 61.111 8.43 0.00 34.38 3.51
3662 4030 3.036084 CGCGCGTCTGTTTGGACT 61.036 61.111 24.19 0.00 34.38 3.85
3663 4031 4.719616 GCGCGCGTCTGTTTGGAC 62.720 66.667 32.35 6.30 0.00 4.02
3685 4053 3.959991 GAGGGGCTTCACGAGGTGC 62.960 68.421 0.00 0.00 32.98 5.01
3686 4054 2.266055 GAGGGGCTTCACGAGGTG 59.734 66.667 0.00 0.00 34.45 4.00
3687 4055 3.003763 GGAGGGGCTTCACGAGGT 61.004 66.667 0.00 0.00 0.00 3.85
3688 4056 3.003173 TGGAGGGGCTTCACGAGG 61.003 66.667 0.00 0.00 0.00 4.63
3689 4057 2.266055 GTGGAGGGGCTTCACGAG 59.734 66.667 0.00 0.00 29.75 4.18
3690 4058 3.319198 GGTGGAGGGGCTTCACGA 61.319 66.667 0.00 0.00 40.67 4.35
3691 4059 3.612247 CTGGTGGAGGGGCTTCACG 62.612 68.421 0.00 0.00 40.67 4.35
3692 4060 2.352805 CTGGTGGAGGGGCTTCAC 59.647 66.667 0.00 0.00 39.14 3.18
3693 4061 3.650950 GCTGGTGGAGGGGCTTCA 61.651 66.667 0.00 0.00 0.00 3.02
3694 4062 4.785453 CGCTGGTGGAGGGGCTTC 62.785 72.222 0.00 0.00 0.00 3.86
3700 4068 4.463879 CAGAGGCGCTGGTGGAGG 62.464 72.222 10.69 0.00 41.07 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.