Multiple sequence alignment - TraesCS4A01G080000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G080000 chr4A 100.000 3405 0 0 1 3405 82403466 82406870 0.000000e+00 6288
1 TraesCS4A01G080000 chr4D 94.571 1713 56 7 1102 2788 381100085 381098384 0.000000e+00 2614
2 TraesCS4A01G080000 chr4D 92.195 410 16 9 41 444 381101256 381100857 1.770000e-157 566
3 TraesCS4A01G080000 chr4D 83.358 679 24 35 456 1086 381100770 381100133 2.310000e-151 545
4 TraesCS4A01G080000 chr4B 93.074 1617 57 13 1105 2698 468455448 468453864 0.000000e+00 2314
5 TraesCS4A01G080000 chr4B 88.235 476 29 7 1 458 468456660 468456194 8.310000e-151 544
6 TraesCS4A01G080000 chr4B 81.832 644 35 37 485 1092 468456095 468455498 1.850000e-127 466
7 TraesCS4A01G080000 chr2B 93.458 214 14 0 1308 1521 682132221 682132434 5.480000e-83 318
8 TraesCS4A01G080000 chr1D 95.429 175 8 0 1512 1686 8012973 8012799 2.590000e-71 279
9 TraesCS4A01G080000 chr1D 89.000 100 11 0 1308 1407 8013077 8012978 1.280000e-24 124
10 TraesCS4A01G080000 chr1B 93.889 180 10 1 1512 1690 658481279 658481100 1.560000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G080000 chr4A 82403466 82406870 3404 False 6288.000000 6288 100.000000 1 3405 1 chr4A.!!$F1 3404
1 TraesCS4A01G080000 chr4D 381098384 381101256 2872 True 1241.666667 2614 90.041333 41 2788 3 chr4D.!!$R1 2747
2 TraesCS4A01G080000 chr4B 468453864 468456660 2796 True 1108.000000 2314 87.713667 1 2698 3 chr4B.!!$R1 2697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 282 0.105964 TTCAGTTCCACACACGGGAG 59.894 55.0 0.00 0.0 35.46 4.30 F
474 595 0.462225 TGAGGACGGACGAGCTAGAG 60.462 60.0 0.00 0.0 0.00 2.43 F
1774 2012 0.174617 CCAACCTCGAGAGCTTCCTC 59.825 60.0 15.71 0.0 38.42 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1402 1640 4.131088 GAGCGTCGGGTGAGGGAC 62.131 72.222 0.0 0.0 0.00 4.46 R
2335 2573 3.554259 TTCATATCGCTACAGCTACCG 57.446 47.619 0.0 0.0 39.32 4.02 R
3099 3364 0.035739 GCCGAGGGTGTTTTGGTAGA 59.964 55.000 0.0 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.152379 CGATAGCAACTTATGAGCAGTGATA 58.848 40.000 0.00 0.00 0.00 2.15
25 26 6.088749 CGATAGCAACTTATGAGCAGTGATAC 59.911 42.308 0.00 0.00 0.00 2.24
76 90 4.044426 GAGCATGCGTTCTTTGACTTTTT 58.956 39.130 13.01 0.00 0.00 1.94
94 108 2.961526 TTAATCTCAGACGGAGCACC 57.038 50.000 0.00 0.00 43.70 5.01
124 138 1.091771 CGCTGGAGGAATTCACGCAT 61.092 55.000 7.93 0.00 0.00 4.73
130 144 1.398390 GAGGAATTCACGCATGTCACC 59.602 52.381 7.93 0.00 0.00 4.02
162 176 1.609840 GACGCAGCGAGTGACAAGAC 61.610 60.000 24.65 0.00 0.00 3.01
219 237 7.149307 TCTCTCTCTAGTACTGTATGTCATCG 58.851 42.308 5.39 0.00 0.00 3.84
224 242 4.902443 AGTACTGTATGTCATCGGACTG 57.098 45.455 0.00 0.00 44.61 3.51
264 282 0.105964 TTCAGTTCCACACACGGGAG 59.894 55.000 0.00 0.00 35.46 4.30
265 283 0.757561 TCAGTTCCACACACGGGAGA 60.758 55.000 0.00 0.00 35.46 3.71
266 284 0.600255 CAGTTCCACACACGGGAGAC 60.600 60.000 0.00 0.00 35.46 3.36
344 363 4.736896 GGTCCAGACGGGTCGTGC 62.737 72.222 0.00 0.00 41.37 5.34
353 372 4.077184 GGGTCGTGCCGATGTCCA 62.077 66.667 0.67 0.00 38.42 4.02
373 392 3.181450 CCAGATTTATGGTGTCCTCCCTC 60.181 52.174 0.00 0.00 35.47 4.30
414 433 1.737838 CTCTTAATGTGCCGCTCCAA 58.262 50.000 0.00 0.00 0.00 3.53
435 457 5.481472 CAAAAACTCATGATACGTACGAGC 58.519 41.667 24.41 9.10 0.00 5.03
474 595 0.462225 TGAGGACGGACGAGCTAGAG 60.462 60.000 0.00 0.00 0.00 2.43
539 660 2.223845 GGCGACGCAAAACCTTTTACTA 59.776 45.455 23.09 0.00 0.00 1.82
540 661 3.220773 GCGACGCAAAACCTTTTACTAC 58.779 45.455 16.42 0.00 0.00 2.73
541 662 3.059393 GCGACGCAAAACCTTTTACTACT 60.059 43.478 16.42 0.00 0.00 2.57
602 723 2.802667 GCGCGCGTCTCATCACAAT 61.803 57.895 32.35 0.00 0.00 2.71
616 737 6.264970 TCTCATCACAATGTCACAAATGGAAA 59.735 34.615 0.00 0.00 34.32 3.13
617 738 6.814043 TCATCACAATGTCACAAATGGAAAA 58.186 32.000 0.00 0.00 34.32 2.29
618 739 7.443477 TCATCACAATGTCACAAATGGAAAAT 58.557 30.769 0.00 0.00 34.32 1.82
619 740 7.599621 TCATCACAATGTCACAAATGGAAAATC 59.400 33.333 0.00 0.00 34.32 2.17
620 741 7.053316 TCACAATGTCACAAATGGAAAATCT 57.947 32.000 0.00 0.00 0.00 2.40
621 742 6.924612 TCACAATGTCACAAATGGAAAATCTG 59.075 34.615 0.00 0.00 0.00 2.90
622 743 6.924612 CACAATGTCACAAATGGAAAATCTGA 59.075 34.615 0.00 0.00 0.00 3.27
623 744 7.115805 CACAATGTCACAAATGGAAAATCTGAG 59.884 37.037 0.00 0.00 0.00 3.35
624 745 5.125100 TGTCACAAATGGAAAATCTGAGC 57.875 39.130 0.00 0.00 0.00 4.26
625 746 4.828939 TGTCACAAATGGAAAATCTGAGCT 59.171 37.500 0.00 0.00 0.00 4.09
626 747 5.302568 TGTCACAAATGGAAAATCTGAGCTT 59.697 36.000 0.00 0.00 0.00 3.74
627 748 5.860716 GTCACAAATGGAAAATCTGAGCTTC 59.139 40.000 0.00 0.00 0.00 3.86
628 749 5.535783 TCACAAATGGAAAATCTGAGCTTCA 59.464 36.000 0.00 0.00 0.00 3.02
629 750 6.040729 TCACAAATGGAAAATCTGAGCTTCAA 59.959 34.615 0.00 0.00 0.00 2.69
630 751 6.702723 CACAAATGGAAAATCTGAGCTTCAAA 59.297 34.615 0.00 0.00 0.00 2.69
631 752 7.225145 CACAAATGGAAAATCTGAGCTTCAAAA 59.775 33.333 0.00 0.00 0.00 2.44
632 753 7.769970 ACAAATGGAAAATCTGAGCTTCAAAAA 59.230 29.630 0.00 0.00 0.00 1.94
633 754 7.958053 AATGGAAAATCTGAGCTTCAAAAAG 57.042 32.000 0.00 0.00 35.47 2.27
634 755 5.846203 TGGAAAATCTGAGCTTCAAAAAGG 58.154 37.500 0.00 0.00 32.79 3.11
635 756 5.598005 TGGAAAATCTGAGCTTCAAAAAGGA 59.402 36.000 0.00 0.00 32.79 3.36
636 757 6.098124 TGGAAAATCTGAGCTTCAAAAAGGAA 59.902 34.615 0.00 0.00 32.79 3.36
637 758 6.986231 GGAAAATCTGAGCTTCAAAAAGGAAA 59.014 34.615 0.00 0.00 32.79 3.13
638 759 7.495606 GGAAAATCTGAGCTTCAAAAAGGAAAA 59.504 33.333 0.00 0.00 32.79 2.29
639 760 7.776933 AAATCTGAGCTTCAAAAAGGAAAAC 57.223 32.000 0.00 0.00 32.79 2.43
640 761 5.913137 TCTGAGCTTCAAAAAGGAAAACA 57.087 34.783 0.00 0.00 32.79 2.83
641 762 6.279513 TCTGAGCTTCAAAAAGGAAAACAA 57.720 33.333 0.00 0.00 32.79 2.83
642 763 6.696411 TCTGAGCTTCAAAAAGGAAAACAAA 58.304 32.000 0.00 0.00 32.79 2.83
643 764 7.330262 TCTGAGCTTCAAAAAGGAAAACAAAT 58.670 30.769 0.00 0.00 32.79 2.32
644 765 7.278424 TCTGAGCTTCAAAAAGGAAAACAAATG 59.722 33.333 0.00 0.00 32.79 2.32
645 766 6.315891 TGAGCTTCAAAAAGGAAAACAAATGG 59.684 34.615 0.00 0.00 32.79 3.16
646 767 6.413892 AGCTTCAAAAAGGAAAACAAATGGA 58.586 32.000 0.00 0.00 32.79 3.41
647 768 6.539826 AGCTTCAAAAAGGAAAACAAATGGAG 59.460 34.615 0.00 0.00 32.79 3.86
665 786 1.688197 GAGAATCTGAGAGCAGGAGGG 59.312 57.143 0.00 0.00 42.53 4.30
705 837 1.395826 GGAGATGGTCCAGACGGAGG 61.396 65.000 0.00 0.00 46.10 4.30
877 1030 4.279043 GGCAACCAACACCGCACC 62.279 66.667 0.00 0.00 0.00 5.01
879 1032 4.622456 CAACCAACACCGCACCGC 62.622 66.667 0.00 0.00 0.00 5.68
918 1101 4.584688 GCAAAAGCAGCCACCATC 57.415 55.556 0.00 0.00 0.00 3.51
919 1102 1.079612 GCAAAAGCAGCCACCATCC 60.080 57.895 0.00 0.00 0.00 3.51
920 1103 1.593265 CAAAAGCAGCCACCATCCC 59.407 57.895 0.00 0.00 0.00 3.85
921 1104 0.901580 CAAAAGCAGCCACCATCCCT 60.902 55.000 0.00 0.00 0.00 4.20
967 1166 1.007387 CAGCCCAACAAAAGGTCGC 60.007 57.895 0.00 0.00 0.00 5.19
981 1180 1.058404 GGTCGCTGTTGTTCGTAGAC 58.942 55.000 0.00 0.00 34.32 2.59
1086 1289 2.095567 CCTTTTCTCCTTGCGATGTGTG 60.096 50.000 0.00 0.00 0.00 3.82
1088 1291 3.394674 TTTCTCCTTGCGATGTGTGTA 57.605 42.857 0.00 0.00 0.00 2.90
1090 1293 2.892374 TCTCCTTGCGATGTGTGTATG 58.108 47.619 0.00 0.00 0.00 2.39
1092 1295 3.002791 CTCCTTGCGATGTGTGTATGTT 58.997 45.455 0.00 0.00 0.00 2.71
1093 1296 2.741517 TCCTTGCGATGTGTGTATGTTG 59.258 45.455 0.00 0.00 0.00 3.33
1094 1297 2.508867 CTTGCGATGTGTGTATGTTGC 58.491 47.619 0.00 0.00 0.00 4.17
1097 1300 2.095819 TGCGATGTGTGTATGTTGCTTG 60.096 45.455 0.00 0.00 0.00 4.01
1099 1302 3.481839 CGATGTGTGTATGTTGCTTGTG 58.518 45.455 0.00 0.00 0.00 3.33
1100 1303 3.186205 CGATGTGTGTATGTTGCTTGTGA 59.814 43.478 0.00 0.00 0.00 3.58
1158 1396 3.197790 CGAGACCAAGCGGCATGG 61.198 66.667 21.70 21.70 43.84 3.66
1402 1640 2.507102 ATCCGCTCGCTGTTCGTG 60.507 61.111 0.00 0.00 39.67 4.35
1423 1661 3.374402 CTCACCCGACGCTCCACT 61.374 66.667 0.00 0.00 0.00 4.00
1465 1703 4.458829 TCGGCCTCGGAGGGTGAT 62.459 66.667 24.81 0.00 35.37 3.06
1774 2012 0.174617 CCAACCTCGAGAGCTTCCTC 59.825 60.000 15.71 0.00 38.42 3.71
1907 2145 3.465403 CCTGGGAGGAGGTGCTCG 61.465 72.222 0.00 0.00 37.67 5.03
2276 2514 1.855978 TCGTGTGCTTCTACAACAACG 59.144 47.619 0.00 0.00 31.36 4.10
2282 2520 2.222953 CTTCTACAACAACGGCCGCG 62.223 60.000 28.58 20.08 0.00 6.46
2483 2722 4.314522 TGATGTGTGAATATGGGGTGTT 57.685 40.909 0.00 0.00 0.00 3.32
2546 2811 3.189080 TGAAGTGATCATCTTTGGTTGCG 59.811 43.478 0.00 0.00 31.50 4.85
2597 2862 2.764314 GCGCATGCCCGAGACAAAT 61.764 57.895 13.15 0.00 33.98 2.32
2660 2925 1.841302 ATGCGGGTGCTCCTTTCAGA 61.841 55.000 4.53 0.00 43.34 3.27
2679 2944 1.398390 GAGGAAACGATGCCATGTCAC 59.602 52.381 0.00 0.00 0.00 3.67
2688 2953 1.227674 GCCATGTCACCGGATCCTC 60.228 63.158 9.46 0.00 0.00 3.71
2710 2975 1.668826 AGGTGAGGCCAACTCCAATA 58.331 50.000 18.49 0.00 46.01 1.90
2742 3007 3.427425 CCGTTTGGATCCGCGCAA 61.427 61.111 8.75 0.00 37.49 4.85
2744 3009 1.795962 CGTTTGGATCCGCGCAAAC 60.796 57.895 22.26 22.26 35.82 2.93
2755 3020 0.700226 CGCGCAAACAAAATACACGG 59.300 50.000 8.75 0.00 0.00 4.94
2756 3021 1.056869 GCGCAAACAAAATACACGGG 58.943 50.000 0.30 0.00 0.00 5.28
2760 3025 2.803492 GCAAACAAAATACACGGGCCAA 60.803 45.455 4.39 0.00 0.00 4.52
2765 3030 0.250381 AAATACACGGGCCAACGTCA 60.250 50.000 4.39 0.00 46.75 4.35
2773 3038 0.526739 GGGCCAACGTCAACACAAAC 60.527 55.000 4.39 0.00 0.00 2.93
2776 3041 0.727970 CCAACGTCAACACAAACGGA 59.272 50.000 0.00 0.00 42.99 4.69
2791 3056 3.231222 CGGACGGATGTTCGTACTC 57.769 57.895 0.00 0.00 42.34 2.59
2792 3057 0.448990 CGGACGGATGTTCGTACTCA 59.551 55.000 0.00 0.00 42.34 3.41
2793 3058 1.065102 CGGACGGATGTTCGTACTCAT 59.935 52.381 0.00 0.00 42.34 2.90
2794 3059 2.479049 CGGACGGATGTTCGTACTCATT 60.479 50.000 0.00 0.00 42.34 2.57
2795 3060 3.518590 GGACGGATGTTCGTACTCATTT 58.481 45.455 0.00 0.00 43.96 2.32
2796 3061 3.930848 GGACGGATGTTCGTACTCATTTT 59.069 43.478 0.00 0.00 43.96 1.82
2797 3062 4.390909 GGACGGATGTTCGTACTCATTTTT 59.609 41.667 0.00 0.00 43.96 1.94
2798 3063 5.445540 GGACGGATGTTCGTACTCATTTTTC 60.446 44.000 0.00 0.00 43.96 2.29
2799 3064 4.992319 ACGGATGTTCGTACTCATTTTTCA 59.008 37.500 0.00 0.00 41.98 2.69
2800 3065 5.467399 ACGGATGTTCGTACTCATTTTTCAA 59.533 36.000 0.00 0.00 41.98 2.69
2801 3066 5.788531 CGGATGTTCGTACTCATTTTTCAAC 59.211 40.000 0.00 0.00 0.00 3.18
2802 3067 6.565060 CGGATGTTCGTACTCATTTTTCAACA 60.565 38.462 0.00 0.00 0.00 3.33
2803 3068 7.305474 GGATGTTCGTACTCATTTTTCAACAT 58.695 34.615 0.00 0.00 36.24 2.71
2804 3069 8.447833 GGATGTTCGTACTCATTTTTCAACATA 58.552 33.333 0.00 0.00 34.24 2.29
2805 3070 9.820229 GATGTTCGTACTCATTTTTCAACATAA 57.180 29.630 0.00 0.00 34.24 1.90
2810 3075 9.619316 TCGTACTCATTTTTCAACATAAATTGG 57.381 29.630 0.00 0.00 0.00 3.16
2811 3076 9.405587 CGTACTCATTTTTCAACATAAATTGGT 57.594 29.630 0.00 0.00 0.00 3.67
2821 3086 5.689514 TCAACATAAATTGGTTGAGTTTGCG 59.310 36.000 13.51 0.00 46.01 4.85
2822 3087 5.195001 ACATAAATTGGTTGAGTTTGCGT 57.805 34.783 0.00 0.00 0.00 5.24
2823 3088 5.219633 ACATAAATTGGTTGAGTTTGCGTC 58.780 37.500 0.00 0.00 0.00 5.19
2824 3089 5.009610 ACATAAATTGGTTGAGTTTGCGTCT 59.990 36.000 0.00 0.00 0.00 4.18
2825 3090 3.354089 AATTGGTTGAGTTTGCGTCTG 57.646 42.857 0.00 0.00 0.00 3.51
2826 3091 0.380378 TTGGTTGAGTTTGCGTCTGC 59.620 50.000 0.00 0.00 43.20 4.26
2839 3104 2.049156 TCTGCGCAGACACCTTCG 60.049 61.111 35.30 8.71 31.41 3.79
2843 3108 2.357517 CGCAGACACCTTCGCCTT 60.358 61.111 0.00 0.00 0.00 4.35
2844 3109 2.671177 CGCAGACACCTTCGCCTTG 61.671 63.158 0.00 0.00 0.00 3.61
2845 3110 2.970974 GCAGACACCTTCGCCTTGC 61.971 63.158 0.00 0.00 0.00 4.01
2846 3111 1.597854 CAGACACCTTCGCCTTGCA 60.598 57.895 0.00 0.00 0.00 4.08
2847 3112 1.148273 AGACACCTTCGCCTTGCAA 59.852 52.632 0.00 0.00 0.00 4.08
2848 3113 0.886490 AGACACCTTCGCCTTGCAAG 60.886 55.000 19.93 19.93 0.00 4.01
2849 3114 0.884704 GACACCTTCGCCTTGCAAGA 60.885 55.000 28.05 5.30 0.00 3.02
2850 3115 0.886490 ACACCTTCGCCTTGCAAGAG 60.886 55.000 28.05 19.81 0.00 2.85
2851 3116 0.886490 CACCTTCGCCTTGCAAGAGT 60.886 55.000 28.05 11.40 0.00 3.24
2852 3117 0.685097 ACCTTCGCCTTGCAAGAGTA 59.315 50.000 28.05 13.36 0.00 2.59
2853 3118 1.071699 ACCTTCGCCTTGCAAGAGTAA 59.928 47.619 28.05 15.76 0.00 2.24
2854 3119 2.290323 ACCTTCGCCTTGCAAGAGTAAT 60.290 45.455 28.05 4.05 0.00 1.89
2855 3120 2.096496 CCTTCGCCTTGCAAGAGTAATG 59.904 50.000 28.05 10.74 0.00 1.90
2856 3121 1.086696 TCGCCTTGCAAGAGTAATGC 58.913 50.000 28.05 18.87 44.08 3.56
2857 3122 1.089920 CGCCTTGCAAGAGTAATGCT 58.910 50.000 28.05 0.00 44.14 3.79
2858 3123 2.093711 TCGCCTTGCAAGAGTAATGCTA 60.094 45.455 28.05 10.33 44.14 3.49
2859 3124 2.286294 CGCCTTGCAAGAGTAATGCTAG 59.714 50.000 28.05 7.78 44.14 3.42
2860 3125 3.535561 GCCTTGCAAGAGTAATGCTAGA 58.464 45.455 28.05 0.00 45.47 2.43
2861 3126 3.559242 GCCTTGCAAGAGTAATGCTAGAG 59.441 47.826 28.05 7.06 45.47 2.43
2862 3127 4.681781 GCCTTGCAAGAGTAATGCTAGAGA 60.682 45.833 28.05 0.00 45.47 3.10
2863 3128 5.609423 CCTTGCAAGAGTAATGCTAGAGAT 58.391 41.667 28.05 0.00 45.47 2.75
2864 3129 6.739843 GCCTTGCAAGAGTAATGCTAGAGATA 60.740 42.308 28.05 0.00 45.47 1.98
2865 3130 6.644592 CCTTGCAAGAGTAATGCTAGAGATAC 59.355 42.308 28.05 0.00 45.47 2.24
2866 3131 6.715347 TGCAAGAGTAATGCTAGAGATACA 57.285 37.500 0.00 0.00 44.14 2.29
2867 3132 7.295322 TGCAAGAGTAATGCTAGAGATACAT 57.705 36.000 0.00 0.00 44.14 2.29
2868 3133 8.409358 TGCAAGAGTAATGCTAGAGATACATA 57.591 34.615 0.00 0.00 44.14 2.29
2869 3134 9.029368 TGCAAGAGTAATGCTAGAGATACATAT 57.971 33.333 0.00 0.00 44.14 1.78
2900 3165 9.927081 ACATAGGATTTACAAGGAGATGAATTT 57.073 29.630 0.00 0.00 0.00 1.82
2903 3168 8.884124 AGGATTTACAAGGAGATGAATTTTGA 57.116 30.769 0.00 0.00 0.00 2.69
2904 3169 9.484806 AGGATTTACAAGGAGATGAATTTTGAT 57.515 29.630 0.00 0.00 0.00 2.57
2907 3172 9.880157 ATTTACAAGGAGATGAATTTTGATTGG 57.120 29.630 0.00 0.00 0.00 3.16
2908 3173 8.648698 TTACAAGGAGATGAATTTTGATTGGA 57.351 30.769 0.00 0.00 0.00 3.53
2909 3174 7.543359 ACAAGGAGATGAATTTTGATTGGAA 57.457 32.000 0.00 0.00 0.00 3.53
2910 3175 7.965718 ACAAGGAGATGAATTTTGATTGGAAA 58.034 30.769 0.00 0.00 0.00 3.13
2911 3176 8.599792 ACAAGGAGATGAATTTTGATTGGAAAT 58.400 29.630 0.00 0.00 0.00 2.17
2912 3177 9.444600 CAAGGAGATGAATTTTGATTGGAAATT 57.555 29.630 0.00 0.00 38.89 1.82
2943 3208 9.047947 AGGAGATATATTTACATAAGACACCCC 57.952 37.037 0.00 0.00 0.00 4.95
2944 3209 9.047947 GGAGATATATTTACATAAGACACCCCT 57.952 37.037 0.00 0.00 0.00 4.79
2945 3210 9.877178 GAGATATATTTACATAAGACACCCCTG 57.123 37.037 0.00 0.00 0.00 4.45
2946 3211 9.615660 AGATATATTTACATAAGACACCCCTGA 57.384 33.333 0.00 0.00 0.00 3.86
2947 3212 9.877178 GATATATTTACATAAGACACCCCTGAG 57.123 37.037 0.00 0.00 0.00 3.35
2948 3213 7.691993 ATATTTACATAAGACACCCCTGAGT 57.308 36.000 0.00 0.00 0.00 3.41
2949 3214 5.836024 TTTACATAAGACACCCCTGAGTT 57.164 39.130 0.00 0.00 0.00 3.01
2950 3215 5.836024 TTACATAAGACACCCCTGAGTTT 57.164 39.130 0.00 0.00 0.00 2.66
2951 3216 4.287766 ACATAAGACACCCCTGAGTTTC 57.712 45.455 0.00 0.00 0.00 2.78
2952 3217 3.910627 ACATAAGACACCCCTGAGTTTCT 59.089 43.478 0.00 0.00 0.00 2.52
2953 3218 2.938956 AAGACACCCCTGAGTTTCTG 57.061 50.000 0.00 0.00 27.49 3.02
2954 3219 1.059913 AGACACCCCTGAGTTTCTGG 58.940 55.000 0.00 0.00 35.51 3.86
2959 3224 2.463441 CCCTGAGTTTCTGGGTGGA 58.537 57.895 11.65 0.00 46.87 4.02
2960 3225 0.036875 CCCTGAGTTTCTGGGTGGAC 59.963 60.000 11.65 0.00 46.87 4.02
2961 3226 0.036875 CCTGAGTTTCTGGGTGGACC 59.963 60.000 0.00 0.00 40.81 4.46
2971 3236 4.252493 GGTGGACCCTTTCTCCCT 57.748 61.111 0.00 0.00 0.00 4.20
2972 3237 1.992037 GGTGGACCCTTTCTCCCTC 59.008 63.158 0.00 0.00 0.00 4.30
2973 3238 0.547954 GGTGGACCCTTTCTCCCTCT 60.548 60.000 0.00 0.00 0.00 3.69
2974 3239 1.363246 GTGGACCCTTTCTCCCTCTT 58.637 55.000 0.00 0.00 0.00 2.85
2975 3240 2.547990 GTGGACCCTTTCTCCCTCTTA 58.452 52.381 0.00 0.00 0.00 2.10
2976 3241 2.910977 GTGGACCCTTTCTCCCTCTTAA 59.089 50.000 0.00 0.00 0.00 1.85
2977 3242 3.523972 GTGGACCCTTTCTCCCTCTTAAT 59.476 47.826 0.00 0.00 0.00 1.40
2978 3243 3.780850 TGGACCCTTTCTCCCTCTTAATC 59.219 47.826 0.00 0.00 0.00 1.75
2979 3244 4.041464 GGACCCTTTCTCCCTCTTAATCT 58.959 47.826 0.00 0.00 0.00 2.40
2980 3245 4.101898 GGACCCTTTCTCCCTCTTAATCTC 59.898 50.000 0.00 0.00 0.00 2.75
2981 3246 4.041464 ACCCTTTCTCCCTCTTAATCTCC 58.959 47.826 0.00 0.00 0.00 3.71
2982 3247 4.040755 CCCTTTCTCCCTCTTAATCTCCA 58.959 47.826 0.00 0.00 0.00 3.86
2983 3248 4.475016 CCCTTTCTCCCTCTTAATCTCCAA 59.525 45.833 0.00 0.00 0.00 3.53
2984 3249 5.133491 CCCTTTCTCCCTCTTAATCTCCAAT 59.867 44.000 0.00 0.00 0.00 3.16
2985 3250 6.295249 CCTTTCTCCCTCTTAATCTCCAATC 58.705 44.000 0.00 0.00 0.00 2.67
2986 3251 6.126652 CCTTTCTCCCTCTTAATCTCCAATCA 60.127 42.308 0.00 0.00 0.00 2.57
2987 3252 6.891306 TTCTCCCTCTTAATCTCCAATCAA 57.109 37.500 0.00 0.00 0.00 2.57
2988 3253 6.891306 TCTCCCTCTTAATCTCCAATCAAA 57.109 37.500 0.00 0.00 0.00 2.69
2989 3254 7.270832 TCTCCCTCTTAATCTCCAATCAAAA 57.729 36.000 0.00 0.00 0.00 2.44
2990 3255 7.876371 TCTCCCTCTTAATCTCCAATCAAAAT 58.124 34.615 0.00 0.00 0.00 1.82
2991 3256 8.339247 TCTCCCTCTTAATCTCCAATCAAAATT 58.661 33.333 0.00 0.00 0.00 1.82
2992 3257 8.525290 TCCCTCTTAATCTCCAATCAAAATTC 57.475 34.615 0.00 0.00 0.00 2.17
2993 3258 8.115384 TCCCTCTTAATCTCCAATCAAAATTCA 58.885 33.333 0.00 0.00 0.00 2.57
2994 3259 8.921205 CCCTCTTAATCTCCAATCAAAATTCAT 58.079 33.333 0.00 0.00 0.00 2.57
2995 3260 9.962783 CCTCTTAATCTCCAATCAAAATTCATC 57.037 33.333 0.00 0.00 0.00 2.92
2998 3263 9.245962 CTTAATCTCCAATCAAAATTCATCTGC 57.754 33.333 0.00 0.00 0.00 4.26
2999 3264 7.419711 AATCTCCAATCAAAATTCATCTGCT 57.580 32.000 0.00 0.00 0.00 4.24
3000 3265 6.845758 TCTCCAATCAAAATTCATCTGCTT 57.154 33.333 0.00 0.00 0.00 3.91
3001 3266 6.627243 TCTCCAATCAAAATTCATCTGCTTG 58.373 36.000 0.00 0.00 0.00 4.01
3002 3267 6.209986 TCTCCAATCAAAATTCATCTGCTTGT 59.790 34.615 0.00 0.00 0.00 3.16
3003 3268 7.394077 TCTCCAATCAAAATTCATCTGCTTGTA 59.606 33.333 0.00 0.00 0.00 2.41
3004 3269 7.894708 TCCAATCAAAATTCATCTGCTTGTAA 58.105 30.769 0.00 0.00 0.00 2.41
3005 3270 8.366401 TCCAATCAAAATTCATCTGCTTGTAAA 58.634 29.630 0.00 0.00 0.00 2.01
3006 3271 9.158233 CCAATCAAAATTCATCTGCTTGTAAAT 57.842 29.630 0.00 0.00 0.00 1.40
3008 3273 9.932207 AATCAAAATTCATCTGCTTGTAAATCA 57.068 25.926 0.00 0.00 0.00 2.57
3040 3305 9.509956 AAATCTACGTATCTCTAGCATTACTCT 57.490 33.333 0.00 0.00 0.00 3.24
3041 3306 9.509956 AATCTACGTATCTCTAGCATTACTCTT 57.490 33.333 0.00 0.00 0.00 2.85
3042 3307 8.537049 TCTACGTATCTCTAGCATTACTCTTC 57.463 38.462 0.00 0.00 0.00 2.87
3043 3308 6.563222 ACGTATCTCTAGCATTACTCTTCC 57.437 41.667 0.00 0.00 0.00 3.46
3044 3309 5.474189 ACGTATCTCTAGCATTACTCTTCCC 59.526 44.000 0.00 0.00 0.00 3.97
3045 3310 5.708230 CGTATCTCTAGCATTACTCTTCCCT 59.292 44.000 0.00 0.00 0.00 4.20
3046 3311 6.207810 CGTATCTCTAGCATTACTCTTCCCTT 59.792 42.308 0.00 0.00 0.00 3.95
3047 3312 5.860941 TCTCTAGCATTACTCTTCCCTTG 57.139 43.478 0.00 0.00 0.00 3.61
3048 3313 5.273208 TCTCTAGCATTACTCTTCCCTTGT 58.727 41.667 0.00 0.00 0.00 3.16
3049 3314 5.361285 TCTCTAGCATTACTCTTCCCTTGTC 59.639 44.000 0.00 0.00 0.00 3.18
3050 3315 3.636153 AGCATTACTCTTCCCTTGTCC 57.364 47.619 0.00 0.00 0.00 4.02
3051 3316 3.185455 AGCATTACTCTTCCCTTGTCCT 58.815 45.455 0.00 0.00 0.00 3.85
3052 3317 3.589288 AGCATTACTCTTCCCTTGTCCTT 59.411 43.478 0.00 0.00 0.00 3.36
3053 3318 3.942115 GCATTACTCTTCCCTTGTCCTTC 59.058 47.826 0.00 0.00 0.00 3.46
3054 3319 4.518249 CATTACTCTTCCCTTGTCCTTCC 58.482 47.826 0.00 0.00 0.00 3.46
3055 3320 2.424684 ACTCTTCCCTTGTCCTTCCT 57.575 50.000 0.00 0.00 0.00 3.36
3056 3321 2.707554 ACTCTTCCCTTGTCCTTCCTT 58.292 47.619 0.00 0.00 0.00 3.36
3057 3322 2.373502 ACTCTTCCCTTGTCCTTCCTTG 59.626 50.000 0.00 0.00 0.00 3.61
3058 3323 2.639839 CTCTTCCCTTGTCCTTCCTTGA 59.360 50.000 0.00 0.00 0.00 3.02
3059 3324 3.053077 TCTTCCCTTGTCCTTCCTTGAA 58.947 45.455 0.00 0.00 0.00 2.69
3060 3325 2.951229 TCCCTTGTCCTTCCTTGAAC 57.049 50.000 0.00 0.00 0.00 3.18
3061 3326 1.423921 TCCCTTGTCCTTCCTTGAACC 59.576 52.381 0.00 0.00 0.00 3.62
3062 3327 1.523758 CCTTGTCCTTCCTTGAACCG 58.476 55.000 0.00 0.00 0.00 4.44
3063 3328 0.875059 CTTGTCCTTCCTTGAACCGC 59.125 55.000 0.00 0.00 0.00 5.68
3064 3329 0.536460 TTGTCCTTCCTTGAACCGCC 60.536 55.000 0.00 0.00 0.00 6.13
3065 3330 1.375326 GTCCTTCCTTGAACCGCCT 59.625 57.895 0.00 0.00 0.00 5.52
3066 3331 0.611714 GTCCTTCCTTGAACCGCCTA 59.388 55.000 0.00 0.00 0.00 3.93
3067 3332 1.209747 GTCCTTCCTTGAACCGCCTAT 59.790 52.381 0.00 0.00 0.00 2.57
3068 3333 1.485066 TCCTTCCTTGAACCGCCTATC 59.515 52.381 0.00 0.00 0.00 2.08
3069 3334 1.486726 CCTTCCTTGAACCGCCTATCT 59.513 52.381 0.00 0.00 0.00 1.98
3070 3335 2.555199 CTTCCTTGAACCGCCTATCTG 58.445 52.381 0.00 0.00 0.00 2.90
3071 3336 1.568504 TCCTTGAACCGCCTATCTGT 58.431 50.000 0.00 0.00 0.00 3.41
3072 3337 1.207089 TCCTTGAACCGCCTATCTGTG 59.793 52.381 0.00 0.00 0.00 3.66
3073 3338 1.656652 CTTGAACCGCCTATCTGTGG 58.343 55.000 0.00 0.00 41.79 4.17
3074 3339 0.392461 TTGAACCGCCTATCTGTGGC 60.392 55.000 0.00 0.00 46.42 5.01
3083 3348 1.464608 CCTATCTGTGGCACAACAACG 59.535 52.381 22.31 9.63 44.16 4.10
3084 3349 2.143122 CTATCTGTGGCACAACAACGT 58.857 47.619 22.31 6.55 44.16 3.99
3085 3350 0.944386 ATCTGTGGCACAACAACGTC 59.056 50.000 22.31 0.00 44.16 4.34
3086 3351 0.391793 TCTGTGGCACAACAACGTCA 60.392 50.000 22.31 0.00 44.16 4.35
3087 3352 0.662619 CTGTGGCACAACAACGTCAT 59.337 50.000 22.31 0.00 44.16 3.06
3088 3353 1.065401 CTGTGGCACAACAACGTCATT 59.935 47.619 22.31 0.00 44.16 2.57
3089 3354 1.064803 TGTGGCACAACAACGTCATTC 59.935 47.619 19.74 0.00 44.16 2.67
3090 3355 0.665835 TGGCACAACAACGTCATTCC 59.334 50.000 0.00 0.00 31.92 3.01
3091 3356 0.039527 GGCACAACAACGTCATTCCC 60.040 55.000 0.00 0.00 0.00 3.97
3092 3357 0.951558 GCACAACAACGTCATTCCCT 59.048 50.000 0.00 0.00 0.00 4.20
3093 3358 1.069227 GCACAACAACGTCATTCCCTC 60.069 52.381 0.00 0.00 0.00 4.30
3094 3359 1.535462 CACAACAACGTCATTCCCTCC 59.465 52.381 0.00 0.00 0.00 4.30
3095 3360 1.142060 ACAACAACGTCATTCCCTCCA 59.858 47.619 0.00 0.00 0.00 3.86
3096 3361 1.535462 CAACAACGTCATTCCCTCCAC 59.465 52.381 0.00 0.00 0.00 4.02
3097 3362 1.056660 ACAACGTCATTCCCTCCACT 58.943 50.000 0.00 0.00 0.00 4.00
3098 3363 1.002087 ACAACGTCATTCCCTCCACTC 59.998 52.381 0.00 0.00 0.00 3.51
3099 3364 1.276421 CAACGTCATTCCCTCCACTCT 59.724 52.381 0.00 0.00 0.00 3.24
3100 3365 1.187087 ACGTCATTCCCTCCACTCTC 58.813 55.000 0.00 0.00 0.00 3.20
3101 3366 1.272760 ACGTCATTCCCTCCACTCTCT 60.273 52.381 0.00 0.00 0.00 3.10
3102 3367 2.025226 ACGTCATTCCCTCCACTCTCTA 60.025 50.000 0.00 0.00 0.00 2.43
3103 3368 2.359531 CGTCATTCCCTCCACTCTCTAC 59.640 54.545 0.00 0.00 0.00 2.59
3104 3369 2.696187 GTCATTCCCTCCACTCTCTACC 59.304 54.545 0.00 0.00 0.00 3.18
3105 3370 2.314852 TCATTCCCTCCACTCTCTACCA 59.685 50.000 0.00 0.00 0.00 3.25
3106 3371 3.107601 CATTCCCTCCACTCTCTACCAA 58.892 50.000 0.00 0.00 0.00 3.67
3107 3372 3.269592 TTCCCTCCACTCTCTACCAAA 57.730 47.619 0.00 0.00 0.00 3.28
3108 3373 3.269592 TCCCTCCACTCTCTACCAAAA 57.730 47.619 0.00 0.00 0.00 2.44
3109 3374 2.904434 TCCCTCCACTCTCTACCAAAAC 59.096 50.000 0.00 0.00 0.00 2.43
3110 3375 2.637872 CCCTCCACTCTCTACCAAAACA 59.362 50.000 0.00 0.00 0.00 2.83
3111 3376 3.557264 CCCTCCACTCTCTACCAAAACAC 60.557 52.174 0.00 0.00 0.00 3.32
3112 3377 3.557264 CCTCCACTCTCTACCAAAACACC 60.557 52.174 0.00 0.00 0.00 4.16
3113 3378 2.370849 TCCACTCTCTACCAAAACACCC 59.629 50.000 0.00 0.00 0.00 4.61
3114 3379 2.372172 CCACTCTCTACCAAAACACCCT 59.628 50.000 0.00 0.00 0.00 4.34
3115 3380 3.557264 CCACTCTCTACCAAAACACCCTC 60.557 52.174 0.00 0.00 0.00 4.30
3116 3381 2.299297 ACTCTCTACCAAAACACCCTCG 59.701 50.000 0.00 0.00 0.00 4.63
3117 3382 1.621814 TCTCTACCAAAACACCCTCGG 59.378 52.381 0.00 0.00 0.00 4.63
3118 3383 0.035739 TCTACCAAAACACCCTCGGC 59.964 55.000 0.00 0.00 0.00 5.54
3119 3384 0.958876 CTACCAAAACACCCTCGGCC 60.959 60.000 0.00 0.00 0.00 6.13
3120 3385 1.420532 TACCAAAACACCCTCGGCCT 61.421 55.000 0.00 0.00 0.00 5.19
3121 3386 1.971695 CCAAAACACCCTCGGCCTC 60.972 63.158 0.00 0.00 0.00 4.70
3122 3387 1.971695 CAAAACACCCTCGGCCTCC 60.972 63.158 0.00 0.00 0.00 4.30
3123 3388 3.205851 AAAACACCCTCGGCCTCCC 62.206 63.158 0.00 0.00 0.00 4.30
3154 3419 3.814268 CGCCCAATCCCGCAACTG 61.814 66.667 0.00 0.00 0.00 3.16
3155 3420 4.133796 GCCCAATCCCGCAACTGC 62.134 66.667 0.00 0.00 37.78 4.40
3156 3421 2.361610 CCCAATCCCGCAACTGCT 60.362 61.111 0.00 0.00 39.32 4.24
3157 3422 2.409870 CCCAATCCCGCAACTGCTC 61.410 63.158 0.00 0.00 39.32 4.26
3158 3423 2.409870 CCAATCCCGCAACTGCTCC 61.410 63.158 0.00 0.00 39.32 4.70
3159 3424 2.044946 AATCCCGCAACTGCTCCC 60.045 61.111 0.00 0.00 39.32 4.30
3160 3425 2.606587 AATCCCGCAACTGCTCCCT 61.607 57.895 0.00 0.00 39.32 4.20
3161 3426 2.142292 AATCCCGCAACTGCTCCCTT 62.142 55.000 0.00 0.00 39.32 3.95
3162 3427 2.543067 ATCCCGCAACTGCTCCCTTC 62.543 60.000 0.00 0.00 39.32 3.46
3163 3428 2.747855 CCGCAACTGCTCCCTTCC 60.748 66.667 0.00 0.00 39.32 3.46
3164 3429 3.121030 CGCAACTGCTCCCTTCCG 61.121 66.667 0.00 0.00 39.32 4.30
3165 3430 2.747855 GCAACTGCTCCCTTCCGG 60.748 66.667 0.00 0.00 38.21 5.14
3166 3431 2.747855 CAACTGCTCCCTTCCGGC 60.748 66.667 0.00 0.00 0.00 6.13
3167 3432 4.035102 AACTGCTCCCTTCCGGCC 62.035 66.667 0.00 0.00 0.00 6.13
3183 3448 4.939368 CCCCGTCGTGTTTGCCCA 62.939 66.667 0.00 0.00 0.00 5.36
3184 3449 2.671619 CCCGTCGTGTTTGCCCAT 60.672 61.111 0.00 0.00 0.00 4.00
3185 3450 2.560861 CCGTCGTGTTTGCCCATG 59.439 61.111 0.00 0.00 0.00 3.66
3186 3451 2.258013 CCGTCGTGTTTGCCCATGT 61.258 57.895 0.00 0.00 0.00 3.21
3187 3452 1.206578 CGTCGTGTTTGCCCATGTC 59.793 57.895 0.00 0.00 0.00 3.06
3188 3453 1.206578 GTCGTGTTTGCCCATGTCG 59.793 57.895 0.00 0.00 0.00 4.35
3189 3454 1.227704 TCGTGTTTGCCCATGTCGT 60.228 52.632 0.00 0.00 0.00 4.34
3190 3455 1.082169 CGTGTTTGCCCATGTCGTG 60.082 57.895 0.00 0.00 0.00 4.35
3198 3463 4.402528 CCATGTCGTGGGCCCGAA 62.403 66.667 19.37 0.94 44.79 4.30
3199 3464 2.819595 CATGTCGTGGGCCCGAAG 60.820 66.667 19.37 11.20 38.80 3.79
3200 3465 3.000819 ATGTCGTGGGCCCGAAGA 61.001 61.111 19.37 13.65 38.80 2.87
3201 3466 2.589157 ATGTCGTGGGCCCGAAGAA 61.589 57.895 19.37 2.48 38.80 2.52
3202 3467 2.434359 GTCGTGGGCCCGAAGAAG 60.434 66.667 19.37 1.14 38.80 2.85
3203 3468 4.388499 TCGTGGGCCCGAAGAAGC 62.388 66.667 19.37 0.00 33.15 3.86
3205 3470 4.344865 GTGGGCCCGAAGAAGCCA 62.345 66.667 19.37 0.00 46.43 4.75
3206 3471 3.575247 TGGGCCCGAAGAAGCCAA 61.575 61.111 19.37 0.00 46.43 4.52
3207 3472 2.282887 GGGCCCGAAGAAGCCAAA 60.283 61.111 5.69 0.00 46.43 3.28
3208 3473 2.343426 GGGCCCGAAGAAGCCAAAG 61.343 63.158 5.69 0.00 46.43 2.77
3209 3474 2.343426 GGCCCGAAGAAGCCAAAGG 61.343 63.158 0.00 0.00 44.48 3.11
3210 3475 1.603739 GCCCGAAGAAGCCAAAGGT 60.604 57.895 0.00 0.00 0.00 3.50
3211 3476 1.866853 GCCCGAAGAAGCCAAAGGTG 61.867 60.000 0.00 0.00 0.00 4.00
3212 3477 0.250727 CCCGAAGAAGCCAAAGGTGA 60.251 55.000 0.00 0.00 0.00 4.02
3213 3478 1.160137 CCGAAGAAGCCAAAGGTGAG 58.840 55.000 0.00 0.00 0.00 3.51
3214 3479 0.519077 CGAAGAAGCCAAAGGTGAGC 59.481 55.000 0.00 0.00 0.00 4.26
3215 3480 1.609208 GAAGAAGCCAAAGGTGAGCA 58.391 50.000 0.00 0.00 0.00 4.26
3216 3481 1.268079 GAAGAAGCCAAAGGTGAGCAC 59.732 52.381 0.00 0.00 0.00 4.40
3247 3512 4.094684 GTCATCCAGACGGCGAAG 57.905 61.111 16.62 1.97 37.53 3.79
3248 3513 1.511305 GTCATCCAGACGGCGAAGA 59.489 57.895 16.62 4.50 37.53 2.87
3249 3514 0.526524 GTCATCCAGACGGCGAAGAG 60.527 60.000 16.62 0.00 37.53 2.85
3250 3515 1.227089 CATCCAGACGGCGAAGAGG 60.227 63.158 16.62 10.05 0.00 3.69
3251 3516 2.427245 ATCCAGACGGCGAAGAGGG 61.427 63.158 16.62 7.72 0.00 4.30
3252 3517 3.382832 CCAGACGGCGAAGAGGGT 61.383 66.667 16.62 0.00 0.00 4.34
3253 3518 2.657237 CAGACGGCGAAGAGGGTT 59.343 61.111 16.62 0.00 0.00 4.11
3254 3519 1.738099 CAGACGGCGAAGAGGGTTG 60.738 63.158 16.62 0.00 0.00 3.77
3255 3520 2.434359 GACGGCGAAGAGGGTTGG 60.434 66.667 16.62 0.00 0.00 3.77
3256 3521 4.699522 ACGGCGAAGAGGGTTGGC 62.700 66.667 16.62 0.00 0.00 4.52
3260 3525 3.702048 CGAAGAGGGTTGGCCGGA 61.702 66.667 5.05 0.00 34.97 5.14
3261 3526 2.269241 GAAGAGGGTTGGCCGGAG 59.731 66.667 5.05 0.00 34.97 4.63
3275 3540 1.901085 CGGAGGAGGAAGGACAAGG 59.099 63.158 0.00 0.00 0.00 3.61
3276 3541 0.905337 CGGAGGAGGAAGGACAAGGT 60.905 60.000 0.00 0.00 0.00 3.50
3277 3542 0.615850 GGAGGAGGAAGGACAAGGTG 59.384 60.000 0.00 0.00 0.00 4.00
3278 3543 0.615850 GAGGAGGAAGGACAAGGTGG 59.384 60.000 0.00 0.00 0.00 4.61
3279 3544 0.193574 AGGAGGAAGGACAAGGTGGA 59.806 55.000 0.00 0.00 0.00 4.02
3280 3545 1.064825 GGAGGAAGGACAAGGTGGAA 58.935 55.000 0.00 0.00 0.00 3.53
3281 3546 1.423921 GGAGGAAGGACAAGGTGGAAA 59.576 52.381 0.00 0.00 0.00 3.13
3282 3547 2.158519 GGAGGAAGGACAAGGTGGAAAA 60.159 50.000 0.00 0.00 0.00 2.29
3283 3548 3.562182 GAGGAAGGACAAGGTGGAAAAA 58.438 45.455 0.00 0.00 0.00 1.94
3284 3549 3.566351 AGGAAGGACAAGGTGGAAAAAG 58.434 45.455 0.00 0.00 0.00 2.27
3285 3550 3.204382 AGGAAGGACAAGGTGGAAAAAGA 59.796 43.478 0.00 0.00 0.00 2.52
3286 3551 3.958147 GGAAGGACAAGGTGGAAAAAGAA 59.042 43.478 0.00 0.00 0.00 2.52
3287 3552 4.038042 GGAAGGACAAGGTGGAAAAAGAAG 59.962 45.833 0.00 0.00 0.00 2.85
3288 3553 2.959030 AGGACAAGGTGGAAAAAGAAGC 59.041 45.455 0.00 0.00 0.00 3.86
3289 3554 2.035961 GGACAAGGTGGAAAAAGAAGCC 59.964 50.000 0.00 0.00 0.00 4.35
3290 3555 1.681264 ACAAGGTGGAAAAAGAAGCCG 59.319 47.619 0.00 0.00 0.00 5.52
3291 3556 0.673985 AAGGTGGAAAAAGAAGCCGC 59.326 50.000 0.00 0.00 0.00 6.53
3292 3557 1.289066 GGTGGAAAAAGAAGCCGCC 59.711 57.895 0.00 0.00 44.27 6.13
3293 3558 1.081442 GTGGAAAAAGAAGCCGCCG 60.081 57.895 0.00 0.00 0.00 6.46
3294 3559 2.126463 GGAAAAAGAAGCCGCCGC 60.126 61.111 0.00 0.00 0.00 6.53
3295 3560 2.126463 GAAAAAGAAGCCGCCGCC 60.126 61.111 0.00 0.00 34.57 6.13
3296 3561 2.909965 AAAAAGAAGCCGCCGCCA 60.910 55.556 0.00 0.00 34.57 5.69
3297 3562 3.207547 AAAAAGAAGCCGCCGCCAC 62.208 57.895 0.00 0.00 34.57 5.01
3298 3563 4.947147 AAAGAAGCCGCCGCCACA 62.947 61.111 0.00 0.00 34.57 4.17
3307 3572 3.200593 GCCGCCACAGATGCTCAG 61.201 66.667 0.00 0.00 0.00 3.35
3308 3573 2.513204 CCGCCACAGATGCTCAGG 60.513 66.667 0.00 0.00 0.00 3.86
3309 3574 3.200593 CGCCACAGATGCTCAGGC 61.201 66.667 0.00 0.00 41.86 4.85
3310 3575 2.827642 GCCACAGATGCTCAGGCC 60.828 66.667 0.00 0.00 39.42 5.19
3311 3576 2.124403 CCACAGATGCTCAGGCCC 60.124 66.667 0.00 0.00 37.74 5.80
3312 3577 2.124403 CACAGATGCTCAGGCCCC 60.124 66.667 0.00 0.00 37.74 5.80
3313 3578 2.611800 ACAGATGCTCAGGCCCCA 60.612 61.111 0.00 0.00 37.74 4.96
3314 3579 2.124403 CAGATGCTCAGGCCCCAC 60.124 66.667 0.00 0.00 37.74 4.61
3315 3580 3.415087 AGATGCTCAGGCCCCACC 61.415 66.667 0.00 0.00 37.74 4.61
3316 3581 3.731728 GATGCTCAGGCCCCACCA 61.732 66.667 0.00 0.00 43.14 4.17
3317 3582 4.052518 ATGCTCAGGCCCCACCAC 62.053 66.667 0.00 0.00 43.14 4.16
3319 3584 4.729918 GCTCAGGCCCCACCACTG 62.730 72.222 0.00 0.00 43.14 3.66
3320 3585 4.729918 CTCAGGCCCCACCACTGC 62.730 72.222 0.00 0.00 43.14 4.40
3326 3591 4.087892 CCCCACCACTGCGGAGAG 62.088 72.222 12.26 1.63 38.63 3.20
3345 3610 2.266055 GAGGCCCTCGTCACCAAG 59.734 66.667 0.00 0.00 0.00 3.61
3346 3611 3.316573 GAGGCCCTCGTCACCAAGG 62.317 68.421 0.00 0.00 0.00 3.61
3349 3614 4.760047 CCCTCGTCACCAAGGCCG 62.760 72.222 0.00 0.00 0.00 6.13
3350 3615 4.003788 CCTCGTCACCAAGGCCGT 62.004 66.667 0.00 0.00 0.00 5.68
3351 3616 2.738521 CTCGTCACCAAGGCCGTG 60.739 66.667 12.27 12.27 0.00 4.94
3352 3617 3.515316 CTCGTCACCAAGGCCGTGT 62.515 63.158 17.81 3.36 32.86 4.49
3353 3618 2.149803 CTCGTCACCAAGGCCGTGTA 62.150 60.000 17.81 0.00 32.86 2.90
3354 3619 1.736645 CGTCACCAAGGCCGTGTAG 60.737 63.158 17.81 9.38 32.86 2.74
3355 3620 1.370064 GTCACCAAGGCCGTGTAGT 59.630 57.895 17.81 6.34 32.86 2.73
3356 3621 0.604578 GTCACCAAGGCCGTGTAGTA 59.395 55.000 17.81 0.00 32.86 1.82
3357 3622 0.892755 TCACCAAGGCCGTGTAGTAG 59.107 55.000 17.81 4.18 32.86 2.57
3358 3623 0.108329 CACCAAGGCCGTGTAGTAGG 60.108 60.000 17.81 3.37 0.00 3.18
3365 3630 2.822215 CCGTGTAGTAGGCCATCCT 58.178 57.895 5.01 0.00 46.57 3.24
3366 3631 0.674534 CCGTGTAGTAGGCCATCCTC 59.325 60.000 5.01 0.00 43.06 3.71
3367 3632 1.693627 CGTGTAGTAGGCCATCCTCT 58.306 55.000 5.01 0.00 43.06 3.69
3368 3633 2.032620 CGTGTAGTAGGCCATCCTCTT 58.967 52.381 5.01 0.00 43.06 2.85
3369 3634 2.223829 CGTGTAGTAGGCCATCCTCTTG 60.224 54.545 5.01 0.00 43.06 3.02
3370 3635 1.762957 TGTAGTAGGCCATCCTCTTGC 59.237 52.381 5.01 0.00 43.06 4.01
3371 3636 2.043227 GTAGTAGGCCATCCTCTTGCT 58.957 52.381 5.01 0.00 43.06 3.91
3372 3637 0.835941 AGTAGGCCATCCTCTTGCTG 59.164 55.000 5.01 0.00 43.06 4.41
3373 3638 0.179034 GTAGGCCATCCTCTTGCTGG 60.179 60.000 5.01 0.00 43.06 4.85
3374 3639 1.348008 TAGGCCATCCTCTTGCTGGG 61.348 60.000 5.01 0.00 43.06 4.45
3375 3640 2.123982 GCCATCCTCTTGCTGGGG 60.124 66.667 0.00 0.00 0.00 4.96
3376 3641 2.988839 GCCATCCTCTTGCTGGGGT 61.989 63.158 0.00 0.00 0.00 4.95
3377 3642 1.635817 GCCATCCTCTTGCTGGGGTA 61.636 60.000 0.00 0.00 0.00 3.69
3378 3643 0.181350 CCATCCTCTTGCTGGGGTAC 59.819 60.000 0.00 0.00 0.00 3.34
3396 3661 4.856607 CGCGAGCCGTCCCTTCTC 62.857 72.222 0.00 0.00 0.00 2.87
3398 3663 4.856607 CGAGCCGTCCCTTCTCGC 62.857 72.222 0.00 0.00 42.28 5.03
3399 3664 4.516195 GAGCCGTCCCTTCTCGCC 62.516 72.222 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.892358 TCAGGTCTGCCGTCGTTAGT 60.892 55.000 0.00 0.00 40.50 2.24
25 26 0.242825 TTCAGGTCTGCCGTCGTTAG 59.757 55.000 0.00 0.00 40.50 2.34
76 90 2.025155 GAGGTGCTCCGTCTGAGATTA 58.975 52.381 0.00 0.00 44.42 1.75
114 128 1.922135 GCCGGTGACATGCGTGAATT 61.922 55.000 14.17 0.00 0.00 2.17
124 138 4.994471 CTGCAGCTGCCGGTGACA 62.994 66.667 34.64 14.22 41.05 3.58
162 176 1.423845 CGATCAACCTTTTCCCGCG 59.576 57.895 0.00 0.00 0.00 6.46
219 237 1.687297 GGATTCCGTCCTCCCAGTCC 61.687 65.000 0.00 0.00 44.16 3.85
342 361 2.172505 ACCATAAATCTGGACATCGGCA 59.827 45.455 0.00 0.00 39.73 5.69
344 363 3.808728 ACACCATAAATCTGGACATCGG 58.191 45.455 0.00 0.00 39.73 4.18
353 372 3.049344 GGAGGGAGGACACCATAAATCT 58.951 50.000 0.00 0.00 0.00 2.40
414 433 4.740268 TGCTCGTACGTATCATGAGTTTT 58.260 39.130 16.05 0.00 32.60 2.43
435 457 1.102154 TAATCACTGGGGCGCAAATG 58.898 50.000 10.83 7.39 0.00 2.32
539 660 1.202940 GGGTTCTGGAGGCAGAAAAGT 60.203 52.381 0.00 0.00 42.12 2.66
540 661 1.202927 TGGGTTCTGGAGGCAGAAAAG 60.203 52.381 0.00 0.00 42.12 2.27
541 662 0.850100 TGGGTTCTGGAGGCAGAAAA 59.150 50.000 0.00 0.00 42.12 2.29
586 707 0.025513 GACATTGTGATGAGACGCGC 59.974 55.000 5.73 0.00 36.73 6.86
587 708 1.059692 GTGACATTGTGATGAGACGCG 59.940 52.381 3.53 3.53 36.73 6.01
602 723 4.828939 AGCTCAGATTTTCCATTTGTGACA 59.171 37.500 0.00 0.00 0.00 3.58
616 737 6.877236 TGTTTTCCTTTTTGAAGCTCAGATT 58.123 32.000 0.00 0.00 0.00 2.40
617 738 6.469782 TGTTTTCCTTTTTGAAGCTCAGAT 57.530 33.333 0.00 0.00 0.00 2.90
618 739 5.913137 TGTTTTCCTTTTTGAAGCTCAGA 57.087 34.783 0.00 0.00 0.00 3.27
619 740 6.966435 TTTGTTTTCCTTTTTGAAGCTCAG 57.034 33.333 0.00 0.00 0.00 3.35
620 741 6.315891 CCATTTGTTTTCCTTTTTGAAGCTCA 59.684 34.615 0.00 0.00 0.00 4.26
621 742 6.538381 TCCATTTGTTTTCCTTTTTGAAGCTC 59.462 34.615 0.00 0.00 0.00 4.09
622 743 6.413892 TCCATTTGTTTTCCTTTTTGAAGCT 58.586 32.000 0.00 0.00 0.00 3.74
623 744 6.538381 TCTCCATTTGTTTTCCTTTTTGAAGC 59.462 34.615 0.00 0.00 0.00 3.86
624 745 8.491331 TTCTCCATTTGTTTTCCTTTTTGAAG 57.509 30.769 0.00 0.00 0.00 3.02
625 746 9.108284 GATTCTCCATTTGTTTTCCTTTTTGAA 57.892 29.630 0.00 0.00 0.00 2.69
626 747 8.485392 AGATTCTCCATTTGTTTTCCTTTTTGA 58.515 29.630 0.00 0.00 0.00 2.69
627 748 8.553696 CAGATTCTCCATTTGTTTTCCTTTTTG 58.446 33.333 0.00 0.00 0.00 2.44
628 749 8.485392 TCAGATTCTCCATTTGTTTTCCTTTTT 58.515 29.630 0.00 0.00 0.00 1.94
629 750 8.021898 TCAGATTCTCCATTTGTTTTCCTTTT 57.978 30.769 0.00 0.00 0.00 2.27
630 751 7.506938 TCTCAGATTCTCCATTTGTTTTCCTTT 59.493 33.333 0.00 0.00 0.00 3.11
631 752 7.006509 TCTCAGATTCTCCATTTGTTTTCCTT 58.993 34.615 0.00 0.00 0.00 3.36
632 753 6.546484 TCTCAGATTCTCCATTTGTTTTCCT 58.454 36.000 0.00 0.00 0.00 3.36
633 754 6.624642 GCTCTCAGATTCTCCATTTGTTTTCC 60.625 42.308 0.00 0.00 0.00 3.13
634 755 6.072286 TGCTCTCAGATTCTCCATTTGTTTTC 60.072 38.462 0.00 0.00 0.00 2.29
635 756 5.771666 TGCTCTCAGATTCTCCATTTGTTTT 59.228 36.000 0.00 0.00 0.00 2.43
636 757 5.319453 TGCTCTCAGATTCTCCATTTGTTT 58.681 37.500 0.00 0.00 0.00 2.83
637 758 4.914983 TGCTCTCAGATTCTCCATTTGTT 58.085 39.130 0.00 0.00 0.00 2.83
638 759 4.515361 CTGCTCTCAGATTCTCCATTTGT 58.485 43.478 0.00 0.00 42.95 2.83
639 760 3.878103 CCTGCTCTCAGATTCTCCATTTG 59.122 47.826 0.00 0.00 42.95 2.32
640 761 3.779183 TCCTGCTCTCAGATTCTCCATTT 59.221 43.478 0.00 0.00 42.95 2.32
641 762 3.382278 TCCTGCTCTCAGATTCTCCATT 58.618 45.455 0.00 0.00 42.95 3.16
642 763 2.967201 CTCCTGCTCTCAGATTCTCCAT 59.033 50.000 0.00 0.00 42.95 3.41
643 764 2.386779 CTCCTGCTCTCAGATTCTCCA 58.613 52.381 0.00 0.00 42.95 3.86
644 765 1.688197 CCTCCTGCTCTCAGATTCTCC 59.312 57.143 0.00 0.00 42.95 3.71
645 766 1.688197 CCCTCCTGCTCTCAGATTCTC 59.312 57.143 0.00 0.00 42.95 2.87
646 767 1.692121 CCCCTCCTGCTCTCAGATTCT 60.692 57.143 0.00 0.00 42.95 2.40
647 768 0.758123 CCCCTCCTGCTCTCAGATTC 59.242 60.000 0.00 0.00 42.95 2.52
665 786 2.829120 CCCCCTCTCTCTCGATTTATCC 59.171 54.545 0.00 0.00 0.00 2.59
710 842 1.062873 CGTTGGTGCGTTTAATGCCG 61.063 55.000 6.70 0.00 0.00 5.69
832 985 2.751072 CGTCTGTACTGTACGTGTACG 58.249 52.381 18.01 14.06 42.09 3.67
910 1093 4.175337 TAGCGCAGGGATGGTGGC 62.175 66.667 11.47 0.00 0.00 5.01
911 1094 2.109799 CTAGCGCAGGGATGGTGG 59.890 66.667 11.47 0.00 0.00 4.61
912 1095 2.590007 GCTAGCGCAGGGATGGTG 60.590 66.667 11.47 0.00 35.78 4.17
913 1096 4.227134 CGCTAGCGCAGGGATGGT 62.227 66.667 26.07 0.00 39.56 3.55
914 1097 4.227134 ACGCTAGCGCAGGGATGG 62.227 66.667 35.63 7.99 44.19 3.51
915 1098 2.659897 GACGCTAGCGCAGGGATG 60.660 66.667 35.63 8.77 44.19 3.51
916 1099 3.917760 GGACGCTAGCGCAGGGAT 61.918 66.667 35.63 16.46 44.19 3.85
951 1146 1.007387 CAGCGACCTTTTGTTGGGC 60.007 57.895 0.00 0.00 0.00 5.36
967 1166 1.068472 AGCTCCGTCTACGAACAACAG 60.068 52.381 3.65 0.00 43.02 3.16
1057 1256 3.412386 GCAAGGAGAAAAGGTAGAAGCA 58.588 45.455 0.00 0.00 0.00 3.91
1058 1257 2.416893 CGCAAGGAGAAAAGGTAGAAGC 59.583 50.000 0.00 0.00 0.00 3.86
1402 1640 4.131088 GAGCGTCGGGTGAGGGAC 62.131 72.222 0.00 0.00 0.00 4.46
1462 1700 4.731853 TCGCCCTCACCCCCATCA 62.732 66.667 0.00 0.00 0.00 3.07
2335 2573 3.554259 TTCATATCGCTACAGCTACCG 57.446 47.619 0.00 0.00 39.32 4.02
2425 2664 6.698329 GTCCTGTTTTTACCACACAAATAACC 59.302 38.462 0.00 0.00 0.00 2.85
2483 2722 1.203758 TGCTGTTCGAGAGCGGAATTA 59.796 47.619 12.37 0.00 39.47 1.40
2546 2811 1.577328 CCATGACGGTGAAGTGTGCC 61.577 60.000 0.00 0.00 0.00 5.01
2597 2862 3.257127 GGTCCAATCACCAATTTTCCGAA 59.743 43.478 0.00 0.00 36.32 4.30
2660 2925 1.453155 GTGACATGGCATCGTTTCCT 58.547 50.000 3.50 0.00 0.00 3.36
2688 2953 2.266055 GAGTTGGCCTCACCTCCG 59.734 66.667 3.32 0.00 40.17 4.63
2726 2991 1.795962 GTTTGCGCGGATCCAAACG 60.796 57.895 19.31 13.19 40.68 3.60
2730 2995 0.600557 ATTTTGTTTGCGCGGATCCA 59.399 45.000 13.41 1.20 0.00 3.41
2742 3007 1.001158 CGTTGGCCCGTGTATTTTGTT 60.001 47.619 0.00 0.00 0.00 2.83
2744 3009 0.594110 ACGTTGGCCCGTGTATTTTG 59.406 50.000 6.23 0.00 40.08 2.44
2755 3020 0.863957 CGTTTGTGTTGACGTTGGCC 60.864 55.000 0.00 0.00 34.75 5.36
2756 3021 0.863957 CCGTTTGTGTTGACGTTGGC 60.864 55.000 0.00 0.00 37.56 4.52
2760 3025 1.422950 CCGTCCGTTTGTGTTGACGT 61.423 55.000 9.63 0.00 46.69 4.34
2765 3030 1.600485 GAACATCCGTCCGTTTGTGTT 59.400 47.619 0.00 0.00 32.98 3.32
2773 3038 0.448990 TGAGTACGAACATCCGTCCG 59.551 55.000 0.00 0.00 43.20 4.79
2776 3041 4.992319 TGAAAAATGAGTACGAACATCCGT 59.008 37.500 0.00 0.00 45.54 4.69
2788 3053 9.829507 TCAACCAATTTATGTTGAAAAATGAGT 57.170 25.926 10.84 0.00 45.64 3.41
2797 3062 5.689514 CGCAAACTCAACCAATTTATGTTGA 59.310 36.000 12.09 12.09 46.23 3.18
2798 3063 5.461737 ACGCAAACTCAACCAATTTATGTTG 59.538 36.000 6.09 6.09 42.46 3.33
2799 3064 5.596845 ACGCAAACTCAACCAATTTATGTT 58.403 33.333 0.00 0.00 0.00 2.71
2800 3065 5.009610 AGACGCAAACTCAACCAATTTATGT 59.990 36.000 0.00 0.00 0.00 2.29
2801 3066 5.343058 CAGACGCAAACTCAACCAATTTATG 59.657 40.000 0.00 0.00 0.00 1.90
2802 3067 5.460646 CAGACGCAAACTCAACCAATTTAT 58.539 37.500 0.00 0.00 0.00 1.40
2803 3068 4.791411 GCAGACGCAAACTCAACCAATTTA 60.791 41.667 0.00 0.00 38.36 1.40
2804 3069 3.705604 CAGACGCAAACTCAACCAATTT 58.294 40.909 0.00 0.00 0.00 1.82
2805 3070 2.543653 GCAGACGCAAACTCAACCAATT 60.544 45.455 0.00 0.00 38.36 2.32
2806 3071 1.001378 GCAGACGCAAACTCAACCAAT 60.001 47.619 0.00 0.00 38.36 3.16
2807 3072 0.380378 GCAGACGCAAACTCAACCAA 59.620 50.000 0.00 0.00 38.36 3.67
2808 3073 1.771073 CGCAGACGCAAACTCAACCA 61.771 55.000 0.00 0.00 38.40 3.67
2809 3074 1.082756 CGCAGACGCAAACTCAACC 60.083 57.895 0.00 0.00 38.40 3.77
2810 3075 4.496898 CGCAGACGCAAACTCAAC 57.503 55.556 0.00 0.00 38.40 3.18
2822 3087 2.049156 CGAAGGTGTCTGCGCAGA 60.049 61.111 35.30 35.30 34.97 4.26
2826 3091 2.357517 AAGGCGAAGGTGTCTGCG 60.358 61.111 0.00 0.00 44.72 5.18
2827 3092 2.970974 GCAAGGCGAAGGTGTCTGC 61.971 63.158 0.00 0.00 0.00 4.26
2828 3093 1.165907 TTGCAAGGCGAAGGTGTCTG 61.166 55.000 0.00 0.00 0.00 3.51
2829 3094 0.886490 CTTGCAAGGCGAAGGTGTCT 60.886 55.000 19.14 0.00 0.00 3.41
2830 3095 0.884704 TCTTGCAAGGCGAAGGTGTC 60.885 55.000 25.73 0.00 0.00 3.67
2831 3096 0.886490 CTCTTGCAAGGCGAAGGTGT 60.886 55.000 25.73 0.00 0.00 4.16
2832 3097 0.886490 ACTCTTGCAAGGCGAAGGTG 60.886 55.000 25.73 3.56 0.00 4.00
2833 3098 0.685097 TACTCTTGCAAGGCGAAGGT 59.315 50.000 25.73 15.85 0.00 3.50
2834 3099 1.808411 TTACTCTTGCAAGGCGAAGG 58.192 50.000 25.73 11.50 0.00 3.46
2835 3100 2.476854 GCATTACTCTTGCAAGGCGAAG 60.477 50.000 25.73 17.51 39.90 3.79
2836 3101 1.468520 GCATTACTCTTGCAAGGCGAA 59.531 47.619 25.73 16.46 39.90 4.70
2837 3102 1.086696 GCATTACTCTTGCAAGGCGA 58.913 50.000 25.73 10.39 39.90 5.54
2838 3103 1.089920 AGCATTACTCTTGCAAGGCG 58.910 50.000 25.73 18.61 42.62 5.52
2839 3104 3.535561 TCTAGCATTACTCTTGCAAGGC 58.464 45.455 25.73 18.94 42.62 4.35
2840 3105 5.016051 TCTCTAGCATTACTCTTGCAAGG 57.984 43.478 25.73 18.09 42.62 3.61
2841 3106 7.205992 TGTATCTCTAGCATTACTCTTGCAAG 58.794 38.462 20.81 20.81 42.62 4.01
2842 3107 7.112452 TGTATCTCTAGCATTACTCTTGCAA 57.888 36.000 0.00 0.00 42.62 4.08
2843 3108 6.715347 TGTATCTCTAGCATTACTCTTGCA 57.285 37.500 0.00 0.00 42.62 4.08
2874 3139 9.927081 AAATTCATCTCCTTGTAAATCCTATGT 57.073 29.630 0.00 0.00 0.00 2.29
2877 3142 9.973661 TCAAAATTCATCTCCTTGTAAATCCTA 57.026 29.630 0.00 0.00 0.00 2.94
2878 3143 8.884124 TCAAAATTCATCTCCTTGTAAATCCT 57.116 30.769 0.00 0.00 0.00 3.24
2881 3146 9.880157 CCAATCAAAATTCATCTCCTTGTAAAT 57.120 29.630 0.00 0.00 0.00 1.40
2882 3147 9.087871 TCCAATCAAAATTCATCTCCTTGTAAA 57.912 29.630 0.00 0.00 0.00 2.01
2883 3148 8.648698 TCCAATCAAAATTCATCTCCTTGTAA 57.351 30.769 0.00 0.00 0.00 2.41
2884 3149 8.648698 TTCCAATCAAAATTCATCTCCTTGTA 57.351 30.769 0.00 0.00 0.00 2.41
2885 3150 7.543359 TTCCAATCAAAATTCATCTCCTTGT 57.457 32.000 0.00 0.00 0.00 3.16
2886 3151 9.444600 AATTTCCAATCAAAATTCATCTCCTTG 57.555 29.630 0.00 0.00 32.27 3.61
2917 3182 9.047947 GGGGTGTCTTATGTAAATATATCTCCT 57.952 37.037 0.00 0.00 0.00 3.69
2918 3183 9.047947 AGGGGTGTCTTATGTAAATATATCTCC 57.952 37.037 0.00 0.00 0.00 3.71
2919 3184 9.877178 CAGGGGTGTCTTATGTAAATATATCTC 57.123 37.037 0.00 0.00 0.00 2.75
2920 3185 9.615660 TCAGGGGTGTCTTATGTAAATATATCT 57.384 33.333 0.00 0.00 0.00 1.98
2921 3186 9.877178 CTCAGGGGTGTCTTATGTAAATATATC 57.123 37.037 0.00 0.00 0.00 1.63
2922 3187 9.393786 ACTCAGGGGTGTCTTATGTAAATATAT 57.606 33.333 0.00 0.00 0.00 0.86
2923 3188 8.792830 ACTCAGGGGTGTCTTATGTAAATATA 57.207 34.615 0.00 0.00 0.00 0.86
2924 3189 7.691993 ACTCAGGGGTGTCTTATGTAAATAT 57.308 36.000 0.00 0.00 0.00 1.28
2925 3190 7.504926 AACTCAGGGGTGTCTTATGTAAATA 57.495 36.000 0.00 0.00 0.00 1.40
2926 3191 6.388619 AACTCAGGGGTGTCTTATGTAAAT 57.611 37.500 0.00 0.00 0.00 1.40
2927 3192 5.836024 AACTCAGGGGTGTCTTATGTAAA 57.164 39.130 0.00 0.00 0.00 2.01
2928 3193 5.546499 AGAAACTCAGGGGTGTCTTATGTAA 59.454 40.000 0.00 0.00 30.26 2.41
2929 3194 5.046591 CAGAAACTCAGGGGTGTCTTATGTA 60.047 44.000 0.00 0.00 31.99 2.29
2930 3195 3.910627 AGAAACTCAGGGGTGTCTTATGT 59.089 43.478 0.00 0.00 30.26 2.29
2931 3196 4.256920 CAGAAACTCAGGGGTGTCTTATG 58.743 47.826 0.00 0.00 31.99 1.90
2932 3197 3.264450 CCAGAAACTCAGGGGTGTCTTAT 59.736 47.826 0.00 0.00 31.99 1.73
2933 3198 2.637872 CCAGAAACTCAGGGGTGTCTTA 59.362 50.000 0.00 0.00 31.99 2.10
2934 3199 1.421646 CCAGAAACTCAGGGGTGTCTT 59.578 52.381 0.00 0.00 31.99 3.01
2935 3200 1.059913 CCAGAAACTCAGGGGTGTCT 58.940 55.000 0.00 0.00 34.41 3.41
2936 3201 0.036875 CCCAGAAACTCAGGGGTGTC 59.963 60.000 0.00 0.00 39.34 3.67
2937 3202 2.155065 CCCAGAAACTCAGGGGTGT 58.845 57.895 0.00 0.00 39.34 4.16
2939 3204 4.772118 ACCCAGAAACTCAGGGGT 57.228 55.556 8.79 6.23 46.52 4.95
2940 3205 1.133809 TCCACCCAGAAACTCAGGGG 61.134 60.000 8.79 5.65 46.52 4.79
2942 3207 0.036875 GGTCCACCCAGAAACTCAGG 59.963 60.000 0.00 0.00 0.00 3.86
2943 3208 3.633361 GGTCCACCCAGAAACTCAG 57.367 57.895 0.00 0.00 0.00 3.35
2954 3219 0.547954 AGAGGGAGAAAGGGTCCACC 60.548 60.000 0.00 0.00 35.57 4.61
2955 3220 1.363246 AAGAGGGAGAAAGGGTCCAC 58.637 55.000 0.00 0.00 35.57 4.02
2956 3221 3.285290 TTAAGAGGGAGAAAGGGTCCA 57.715 47.619 0.00 0.00 35.57 4.02
2957 3222 4.041464 AGATTAAGAGGGAGAAAGGGTCC 58.959 47.826 0.00 0.00 0.00 4.46
2958 3223 4.101898 GGAGATTAAGAGGGAGAAAGGGTC 59.898 50.000 0.00 0.00 0.00 4.46
2959 3224 4.041464 GGAGATTAAGAGGGAGAAAGGGT 58.959 47.826 0.00 0.00 0.00 4.34
2960 3225 4.040755 TGGAGATTAAGAGGGAGAAAGGG 58.959 47.826 0.00 0.00 0.00 3.95
2961 3226 5.700402 TTGGAGATTAAGAGGGAGAAAGG 57.300 43.478 0.00 0.00 0.00 3.11
2962 3227 6.893583 TGATTGGAGATTAAGAGGGAGAAAG 58.106 40.000 0.00 0.00 0.00 2.62
2963 3228 6.891306 TGATTGGAGATTAAGAGGGAGAAA 57.109 37.500 0.00 0.00 0.00 2.52
2964 3229 6.891306 TTGATTGGAGATTAAGAGGGAGAA 57.109 37.500 0.00 0.00 0.00 2.87
2965 3230 6.891306 TTTGATTGGAGATTAAGAGGGAGA 57.109 37.500 0.00 0.00 0.00 3.71
2966 3231 8.530804 AATTTTGATTGGAGATTAAGAGGGAG 57.469 34.615 0.00 0.00 0.00 4.30
2967 3232 8.115384 TGAATTTTGATTGGAGATTAAGAGGGA 58.885 33.333 0.00 0.00 0.00 4.20
2968 3233 8.297470 TGAATTTTGATTGGAGATTAAGAGGG 57.703 34.615 0.00 0.00 0.00 4.30
2969 3234 9.962783 GATGAATTTTGATTGGAGATTAAGAGG 57.037 33.333 0.00 0.00 0.00 3.69
2972 3237 9.245962 GCAGATGAATTTTGATTGGAGATTAAG 57.754 33.333 0.00 0.00 0.00 1.85
2973 3238 8.974238 AGCAGATGAATTTTGATTGGAGATTAA 58.026 29.630 0.00 0.00 0.00 1.40
2974 3239 8.529424 AGCAGATGAATTTTGATTGGAGATTA 57.471 30.769 0.00 0.00 0.00 1.75
2975 3240 7.419711 AGCAGATGAATTTTGATTGGAGATT 57.580 32.000 0.00 0.00 0.00 2.40
2976 3241 7.093465 ACAAGCAGATGAATTTTGATTGGAGAT 60.093 33.333 12.49 0.00 41.19 2.75
2977 3242 6.209986 ACAAGCAGATGAATTTTGATTGGAGA 59.790 34.615 12.49 0.00 41.19 3.71
2978 3243 6.395629 ACAAGCAGATGAATTTTGATTGGAG 58.604 36.000 12.49 0.00 41.19 3.86
2979 3244 6.349243 ACAAGCAGATGAATTTTGATTGGA 57.651 33.333 12.49 0.00 41.19 3.53
2980 3245 8.537049 TTTACAAGCAGATGAATTTTGATTGG 57.463 30.769 12.49 0.00 41.19 3.16
2982 3247 9.932207 TGATTTACAAGCAGATGAATTTTGATT 57.068 25.926 0.00 0.00 0.00 2.57
3014 3279 9.509956 AGAGTAATGCTAGAGATACGTAGATTT 57.490 33.333 0.08 0.00 0.00 2.17
3015 3280 9.509956 AAGAGTAATGCTAGAGATACGTAGATT 57.490 33.333 0.08 0.00 0.00 2.40
3016 3281 9.158233 GAAGAGTAATGCTAGAGATACGTAGAT 57.842 37.037 0.08 0.00 0.00 1.98
3017 3282 7.603404 GGAAGAGTAATGCTAGAGATACGTAGA 59.397 40.741 0.08 0.00 0.00 2.59
3018 3283 7.148373 GGGAAGAGTAATGCTAGAGATACGTAG 60.148 44.444 0.08 0.00 0.00 3.51
3019 3284 6.654161 GGGAAGAGTAATGCTAGAGATACGTA 59.346 42.308 0.00 0.00 0.00 3.57
3020 3285 5.474189 GGGAAGAGTAATGCTAGAGATACGT 59.526 44.000 0.00 0.00 0.00 3.57
3021 3286 5.708230 AGGGAAGAGTAATGCTAGAGATACG 59.292 44.000 0.00 0.00 0.00 3.06
3022 3287 7.014808 ACAAGGGAAGAGTAATGCTAGAGATAC 59.985 40.741 0.00 0.00 0.00 2.24
3023 3288 7.069986 ACAAGGGAAGAGTAATGCTAGAGATA 58.930 38.462 0.00 0.00 0.00 1.98
3024 3289 5.902431 ACAAGGGAAGAGTAATGCTAGAGAT 59.098 40.000 0.00 0.00 0.00 2.75
3025 3290 5.273208 ACAAGGGAAGAGTAATGCTAGAGA 58.727 41.667 0.00 0.00 0.00 3.10
3026 3291 5.452636 GGACAAGGGAAGAGTAATGCTAGAG 60.453 48.000 0.00 0.00 0.00 2.43
3027 3292 4.406003 GGACAAGGGAAGAGTAATGCTAGA 59.594 45.833 0.00 0.00 0.00 2.43
3028 3293 4.407296 AGGACAAGGGAAGAGTAATGCTAG 59.593 45.833 0.00 0.00 0.00 3.42
3029 3294 4.362677 AGGACAAGGGAAGAGTAATGCTA 58.637 43.478 0.00 0.00 0.00 3.49
3030 3295 3.185455 AGGACAAGGGAAGAGTAATGCT 58.815 45.455 0.00 0.00 0.00 3.79
3031 3296 3.636153 AGGACAAGGGAAGAGTAATGC 57.364 47.619 0.00 0.00 0.00 3.56
3032 3297 4.226168 AGGAAGGACAAGGGAAGAGTAATG 59.774 45.833 0.00 0.00 0.00 1.90
3033 3298 4.439860 AGGAAGGACAAGGGAAGAGTAAT 58.560 43.478 0.00 0.00 0.00 1.89
3034 3299 3.870559 AGGAAGGACAAGGGAAGAGTAA 58.129 45.455 0.00 0.00 0.00 2.24
3035 3300 3.562108 AGGAAGGACAAGGGAAGAGTA 57.438 47.619 0.00 0.00 0.00 2.59
3036 3301 2.373502 CAAGGAAGGACAAGGGAAGAGT 59.626 50.000 0.00 0.00 0.00 3.24
3037 3302 2.639839 TCAAGGAAGGACAAGGGAAGAG 59.360 50.000 0.00 0.00 0.00 2.85
3038 3303 2.701551 TCAAGGAAGGACAAGGGAAGA 58.298 47.619 0.00 0.00 0.00 2.87
3039 3304 3.149981 GTTCAAGGAAGGACAAGGGAAG 58.850 50.000 0.00 0.00 0.00 3.46
3040 3305 2.158519 GGTTCAAGGAAGGACAAGGGAA 60.159 50.000 0.00 0.00 0.00 3.97
3041 3306 1.423921 GGTTCAAGGAAGGACAAGGGA 59.576 52.381 0.00 0.00 0.00 4.20
3042 3307 1.882352 CGGTTCAAGGAAGGACAAGGG 60.882 57.143 0.00 0.00 0.00 3.95
3043 3308 1.523758 CGGTTCAAGGAAGGACAAGG 58.476 55.000 0.00 0.00 0.00 3.61
3044 3309 0.875059 GCGGTTCAAGGAAGGACAAG 59.125 55.000 0.00 0.00 0.00 3.16
3045 3310 0.536460 GGCGGTTCAAGGAAGGACAA 60.536 55.000 0.00 0.00 0.00 3.18
3046 3311 1.072505 GGCGGTTCAAGGAAGGACA 59.927 57.895 0.00 0.00 0.00 4.02
3047 3312 0.611714 TAGGCGGTTCAAGGAAGGAC 59.388 55.000 0.00 0.00 0.00 3.85
3048 3313 1.485066 GATAGGCGGTTCAAGGAAGGA 59.515 52.381 0.00 0.00 0.00 3.36
3049 3314 1.486726 AGATAGGCGGTTCAAGGAAGG 59.513 52.381 0.00 0.00 0.00 3.46
3050 3315 2.093447 ACAGATAGGCGGTTCAAGGAAG 60.093 50.000 0.00 0.00 0.00 3.46
3051 3316 1.906574 ACAGATAGGCGGTTCAAGGAA 59.093 47.619 0.00 0.00 0.00 3.36
3052 3317 1.207089 CACAGATAGGCGGTTCAAGGA 59.793 52.381 0.00 0.00 0.00 3.36
3053 3318 1.656652 CACAGATAGGCGGTTCAAGG 58.343 55.000 0.00 0.00 0.00 3.61
3054 3319 1.656652 CCACAGATAGGCGGTTCAAG 58.343 55.000 0.00 0.00 0.00 3.02
3055 3320 0.392461 GCCACAGATAGGCGGTTCAA 60.392 55.000 0.00 0.00 43.15 2.69
3056 3321 1.220749 GCCACAGATAGGCGGTTCA 59.779 57.895 0.00 0.00 43.15 3.18
3057 3322 4.126524 GCCACAGATAGGCGGTTC 57.873 61.111 0.00 0.00 43.15 3.62
3063 3328 1.464608 CGTTGTTGTGCCACAGATAGG 59.535 52.381 0.00 0.00 0.00 2.57
3064 3329 2.143122 ACGTTGTTGTGCCACAGATAG 58.857 47.619 0.00 0.00 0.00 2.08
3065 3330 2.139917 GACGTTGTTGTGCCACAGATA 58.860 47.619 0.00 0.00 0.00 1.98
3066 3331 0.944386 GACGTTGTTGTGCCACAGAT 59.056 50.000 0.00 0.00 0.00 2.90
3067 3332 0.391793 TGACGTTGTTGTGCCACAGA 60.392 50.000 0.00 0.00 0.00 3.41
3068 3333 0.662619 ATGACGTTGTTGTGCCACAG 59.337 50.000 0.00 0.00 0.00 3.66
3069 3334 1.064803 GAATGACGTTGTTGTGCCACA 59.935 47.619 0.00 0.00 0.00 4.17
3070 3335 1.599419 GGAATGACGTTGTTGTGCCAC 60.599 52.381 0.00 0.00 0.00 5.01
3071 3336 0.665835 GGAATGACGTTGTTGTGCCA 59.334 50.000 0.00 0.00 0.00 4.92
3072 3337 0.039527 GGGAATGACGTTGTTGTGCC 60.040 55.000 0.00 0.00 0.00 5.01
3073 3338 0.951558 AGGGAATGACGTTGTTGTGC 59.048 50.000 0.00 0.00 0.00 4.57
3074 3339 1.535462 GGAGGGAATGACGTTGTTGTG 59.465 52.381 0.00 0.00 0.00 3.33
3075 3340 1.142060 TGGAGGGAATGACGTTGTTGT 59.858 47.619 0.00 0.00 0.00 3.32
3076 3341 1.535462 GTGGAGGGAATGACGTTGTTG 59.465 52.381 0.00 0.00 0.00 3.33
3077 3342 1.420138 AGTGGAGGGAATGACGTTGTT 59.580 47.619 0.00 0.00 0.00 2.83
3078 3343 1.002087 GAGTGGAGGGAATGACGTTGT 59.998 52.381 0.00 0.00 0.00 3.32
3079 3344 1.276421 AGAGTGGAGGGAATGACGTTG 59.724 52.381 0.00 0.00 0.00 4.10
3080 3345 1.550976 GAGAGTGGAGGGAATGACGTT 59.449 52.381 0.00 0.00 0.00 3.99
3081 3346 1.187087 GAGAGTGGAGGGAATGACGT 58.813 55.000 0.00 0.00 0.00 4.34
3082 3347 1.479709 AGAGAGTGGAGGGAATGACG 58.520 55.000 0.00 0.00 0.00 4.35
3083 3348 2.696187 GGTAGAGAGTGGAGGGAATGAC 59.304 54.545 0.00 0.00 0.00 3.06
3084 3349 2.314852 TGGTAGAGAGTGGAGGGAATGA 59.685 50.000 0.00 0.00 0.00 2.57
3085 3350 2.752030 TGGTAGAGAGTGGAGGGAATG 58.248 52.381 0.00 0.00 0.00 2.67
3086 3351 3.491766 TTGGTAGAGAGTGGAGGGAAT 57.508 47.619 0.00 0.00 0.00 3.01
3087 3352 3.269592 TTTGGTAGAGAGTGGAGGGAA 57.730 47.619 0.00 0.00 0.00 3.97
3088 3353 2.904434 GTTTTGGTAGAGAGTGGAGGGA 59.096 50.000 0.00 0.00 0.00 4.20
3089 3354 2.637872 TGTTTTGGTAGAGAGTGGAGGG 59.362 50.000 0.00 0.00 0.00 4.30
3090 3355 3.557264 GGTGTTTTGGTAGAGAGTGGAGG 60.557 52.174 0.00 0.00 0.00 4.30
3091 3356 3.557264 GGGTGTTTTGGTAGAGAGTGGAG 60.557 52.174 0.00 0.00 0.00 3.86
3092 3357 2.370849 GGGTGTTTTGGTAGAGAGTGGA 59.629 50.000 0.00 0.00 0.00 4.02
3093 3358 2.372172 AGGGTGTTTTGGTAGAGAGTGG 59.628 50.000 0.00 0.00 0.00 4.00
3094 3359 3.665190 GAGGGTGTTTTGGTAGAGAGTG 58.335 50.000 0.00 0.00 0.00 3.51
3095 3360 2.299297 CGAGGGTGTTTTGGTAGAGAGT 59.701 50.000 0.00 0.00 0.00 3.24
3096 3361 2.353803 CCGAGGGTGTTTTGGTAGAGAG 60.354 54.545 0.00 0.00 0.00 3.20
3097 3362 1.621814 CCGAGGGTGTTTTGGTAGAGA 59.378 52.381 0.00 0.00 0.00 3.10
3098 3363 1.944430 GCCGAGGGTGTTTTGGTAGAG 60.944 57.143 0.00 0.00 0.00 2.43
3099 3364 0.035739 GCCGAGGGTGTTTTGGTAGA 59.964 55.000 0.00 0.00 0.00 2.59
3100 3365 0.958876 GGCCGAGGGTGTTTTGGTAG 60.959 60.000 0.00 0.00 0.00 3.18
3101 3366 1.073548 GGCCGAGGGTGTTTTGGTA 59.926 57.895 0.00 0.00 0.00 3.25
3102 3367 2.203437 GGCCGAGGGTGTTTTGGT 60.203 61.111 0.00 0.00 0.00 3.67
3103 3368 1.971695 GAGGCCGAGGGTGTTTTGG 60.972 63.158 0.00 0.00 0.00 3.28
3104 3369 1.971695 GGAGGCCGAGGGTGTTTTG 60.972 63.158 0.00 0.00 0.00 2.44
3105 3370 2.434774 GGAGGCCGAGGGTGTTTT 59.565 61.111 0.00 0.00 0.00 2.43
3106 3371 3.647771 GGGAGGCCGAGGGTGTTT 61.648 66.667 0.00 0.00 0.00 2.83
3137 3402 3.814268 CAGTTGCGGGATTGGGCG 61.814 66.667 0.00 0.00 0.00 6.13
3138 3403 4.133796 GCAGTTGCGGGATTGGGC 62.134 66.667 0.00 0.00 0.00 5.36
3166 3431 4.939368 TGGGCAAACACGACGGGG 62.939 66.667 0.43 0.00 0.00 5.73
3167 3432 2.671619 ATGGGCAAACACGACGGG 60.672 61.111 0.00 0.00 0.00 5.28
3168 3433 2.182614 GACATGGGCAAACACGACGG 62.183 60.000 0.00 0.00 0.00 4.79
3169 3434 1.206578 GACATGGGCAAACACGACG 59.793 57.895 0.00 0.00 0.00 5.12
3170 3435 1.206578 CGACATGGGCAAACACGAC 59.793 57.895 0.00 0.00 0.00 4.34
3171 3436 1.227704 ACGACATGGGCAAACACGA 60.228 52.632 0.00 0.00 0.00 4.35
3172 3437 1.082169 CACGACATGGGCAAACACG 60.082 57.895 0.00 0.00 0.00 4.49
3173 3438 1.285641 CCACGACATGGGCAAACAC 59.714 57.895 0.00 0.00 45.95 3.32
3174 3439 3.756802 CCACGACATGGGCAAACA 58.243 55.556 0.00 0.00 45.95 2.83
3182 3447 2.796483 TTCTTCGGGCCCACGACATG 62.796 60.000 24.92 2.86 43.37 3.21
3183 3448 2.521958 CTTCTTCGGGCCCACGACAT 62.522 60.000 24.92 0.00 43.37 3.06
3184 3449 3.234630 CTTCTTCGGGCCCACGACA 62.235 63.158 24.92 0.44 43.37 4.35
3185 3450 2.434359 CTTCTTCGGGCCCACGAC 60.434 66.667 24.92 0.00 43.37 4.34
3186 3451 4.388499 GCTTCTTCGGGCCCACGA 62.388 66.667 24.92 11.86 41.76 4.35
3192 3457 1.603739 ACCTTTGGCTTCTTCGGGC 60.604 57.895 0.00 0.00 0.00 6.13
3193 3458 0.250727 TCACCTTTGGCTTCTTCGGG 60.251 55.000 0.00 0.00 0.00 5.14
3194 3459 1.160137 CTCACCTTTGGCTTCTTCGG 58.840 55.000 0.00 0.00 0.00 4.30
3195 3460 0.519077 GCTCACCTTTGGCTTCTTCG 59.481 55.000 0.00 0.00 0.00 3.79
3196 3461 1.268079 GTGCTCACCTTTGGCTTCTTC 59.732 52.381 0.00 0.00 0.00 2.87
3197 3462 1.322442 GTGCTCACCTTTGGCTTCTT 58.678 50.000 0.00 0.00 0.00 2.52
3198 3463 3.027419 GTGCTCACCTTTGGCTTCT 57.973 52.632 0.00 0.00 0.00 2.85
3209 3474 1.760875 TATCCTCCGGGGTGCTCAC 60.761 63.158 0.00 0.00 36.25 3.51
3210 3475 1.760875 GTATCCTCCGGGGTGCTCA 60.761 63.158 0.00 0.00 36.25 4.26
3211 3476 2.857744 CGTATCCTCCGGGGTGCTC 61.858 68.421 0.00 0.00 36.25 4.26
3212 3477 2.838225 CGTATCCTCCGGGGTGCT 60.838 66.667 0.00 0.00 36.25 4.40
3213 3478 3.925090 CCGTATCCTCCGGGGTGC 61.925 72.222 0.00 0.00 41.78 5.01
3219 3484 0.598562 CTGGATGACCGTATCCTCCG 59.401 60.000 10.68 0.00 43.36 4.63
3220 3485 1.614413 GTCTGGATGACCGTATCCTCC 59.386 57.143 10.68 6.69 45.59 4.30
3221 3486 1.267261 CGTCTGGATGACCGTATCCTC 59.733 57.143 10.68 0.00 45.59 3.71
3222 3487 1.319541 CGTCTGGATGACCGTATCCT 58.680 55.000 10.68 0.00 45.59 3.24
3223 3488 0.314302 CCGTCTGGATGACCGTATCC 59.686 60.000 0.00 0.00 45.59 2.59
3224 3489 0.318784 GCCGTCTGGATGACCGTATC 60.319 60.000 0.00 0.00 42.49 2.24
3225 3490 1.740285 GCCGTCTGGATGACCGTAT 59.260 57.895 0.00 0.00 42.49 3.06
3226 3491 2.767445 CGCCGTCTGGATGACCGTA 61.767 63.158 0.00 0.00 42.49 4.02
3227 3492 4.129737 CGCCGTCTGGATGACCGT 62.130 66.667 0.00 0.00 42.49 4.83
3228 3493 3.350909 TTCGCCGTCTGGATGACCG 62.351 63.158 0.00 0.00 42.49 4.79
3229 3494 1.519455 CTTCGCCGTCTGGATGACC 60.519 63.158 0.00 0.00 42.49 4.02
3230 3495 0.526524 CTCTTCGCCGTCTGGATGAC 60.527 60.000 0.00 0.00 42.06 3.06
3231 3496 1.667154 CCTCTTCGCCGTCTGGATGA 61.667 60.000 0.00 0.00 37.49 2.92
3232 3497 1.227089 CCTCTTCGCCGTCTGGATG 60.227 63.158 0.00 0.00 37.49 3.51
3233 3498 2.427245 CCCTCTTCGCCGTCTGGAT 61.427 63.158 0.00 0.00 37.49 3.41
3234 3499 3.068691 CCCTCTTCGCCGTCTGGA 61.069 66.667 0.00 0.00 37.49 3.86
3235 3500 2.943978 AACCCTCTTCGCCGTCTGG 61.944 63.158 0.00 0.00 38.77 3.86
3236 3501 1.738099 CAACCCTCTTCGCCGTCTG 60.738 63.158 0.00 0.00 0.00 3.51
3237 3502 2.657237 CAACCCTCTTCGCCGTCT 59.343 61.111 0.00 0.00 0.00 4.18
3238 3503 2.434359 CCAACCCTCTTCGCCGTC 60.434 66.667 0.00 0.00 0.00 4.79
3239 3504 4.699522 GCCAACCCTCTTCGCCGT 62.700 66.667 0.00 0.00 0.00 5.68
3243 3508 3.665675 CTCCGGCCAACCCTCTTCG 62.666 68.421 2.24 0.00 0.00 3.79
3244 3509 2.269241 CTCCGGCCAACCCTCTTC 59.731 66.667 2.24 0.00 0.00 2.87
3245 3510 3.330720 CCTCCGGCCAACCCTCTT 61.331 66.667 2.24 0.00 0.00 2.85
3246 3511 4.332543 TCCTCCGGCCAACCCTCT 62.333 66.667 2.24 0.00 0.00 3.69
3247 3512 3.787001 CTCCTCCGGCCAACCCTC 61.787 72.222 2.24 0.00 0.00 4.30
3250 3515 3.327404 TTCCTCCTCCGGCCAACC 61.327 66.667 2.24 0.00 0.00 3.77
3251 3516 2.269241 CTTCCTCCTCCGGCCAAC 59.731 66.667 2.24 0.00 0.00 3.77
3252 3517 3.009115 CCTTCCTCCTCCGGCCAA 61.009 66.667 2.24 0.00 0.00 4.52
3253 3518 4.005978 TCCTTCCTCCTCCGGCCA 62.006 66.667 2.24 0.00 0.00 5.36
3254 3519 3.471806 GTCCTTCCTCCTCCGGCC 61.472 72.222 0.00 0.00 0.00 6.13
3255 3520 2.245438 CTTGTCCTTCCTCCTCCGGC 62.245 65.000 0.00 0.00 0.00 6.13
3256 3521 1.617947 CCTTGTCCTTCCTCCTCCGG 61.618 65.000 0.00 0.00 0.00 5.14
3257 3522 0.905337 ACCTTGTCCTTCCTCCTCCG 60.905 60.000 0.00 0.00 0.00 4.63
3258 3523 0.615850 CACCTTGTCCTTCCTCCTCC 59.384 60.000 0.00 0.00 0.00 4.30
3259 3524 0.615850 CCACCTTGTCCTTCCTCCTC 59.384 60.000 0.00 0.00 0.00 3.71
3260 3525 0.193574 TCCACCTTGTCCTTCCTCCT 59.806 55.000 0.00 0.00 0.00 3.69
3261 3526 1.064825 TTCCACCTTGTCCTTCCTCC 58.935 55.000 0.00 0.00 0.00 4.30
3262 3527 2.951229 TTTCCACCTTGTCCTTCCTC 57.049 50.000 0.00 0.00 0.00 3.71
3263 3528 3.204382 TCTTTTTCCACCTTGTCCTTCCT 59.796 43.478 0.00 0.00 0.00 3.36
3264 3529 3.562182 TCTTTTTCCACCTTGTCCTTCC 58.438 45.455 0.00 0.00 0.00 3.46
3265 3530 4.499865 GCTTCTTTTTCCACCTTGTCCTTC 60.500 45.833 0.00 0.00 0.00 3.46
3266 3531 3.384789 GCTTCTTTTTCCACCTTGTCCTT 59.615 43.478 0.00 0.00 0.00 3.36
3267 3532 2.959030 GCTTCTTTTTCCACCTTGTCCT 59.041 45.455 0.00 0.00 0.00 3.85
3268 3533 2.035961 GGCTTCTTTTTCCACCTTGTCC 59.964 50.000 0.00 0.00 0.00 4.02
3269 3534 2.287608 CGGCTTCTTTTTCCACCTTGTC 60.288 50.000 0.00 0.00 0.00 3.18
3270 3535 1.681264 CGGCTTCTTTTTCCACCTTGT 59.319 47.619 0.00 0.00 0.00 3.16
3271 3536 1.602920 GCGGCTTCTTTTTCCACCTTG 60.603 52.381 0.00 0.00 0.00 3.61
3272 3537 0.673985 GCGGCTTCTTTTTCCACCTT 59.326 50.000 0.00 0.00 0.00 3.50
3273 3538 1.179174 GGCGGCTTCTTTTTCCACCT 61.179 55.000 0.00 0.00 0.00 4.00
3274 3539 1.289066 GGCGGCTTCTTTTTCCACC 59.711 57.895 0.00 0.00 0.00 4.61
3275 3540 1.081442 CGGCGGCTTCTTTTTCCAC 60.081 57.895 7.61 0.00 0.00 4.02
3276 3541 2.914908 GCGGCGGCTTCTTTTTCCA 61.915 57.895 9.78 0.00 35.83 3.53
3277 3542 2.126463 GCGGCGGCTTCTTTTTCC 60.126 61.111 9.78 0.00 35.83 3.13
3278 3543 2.126463 GGCGGCGGCTTCTTTTTC 60.126 61.111 27.22 0.00 39.81 2.29
3279 3544 2.909965 TGGCGGCGGCTTCTTTTT 60.910 55.556 33.21 0.00 39.81 1.94
3280 3545 3.670377 GTGGCGGCGGCTTCTTTT 61.670 61.111 33.21 0.00 39.81 2.27
3281 3546 4.947147 TGTGGCGGCGGCTTCTTT 62.947 61.111 33.21 0.00 39.81 2.52
3290 3555 3.200593 CTGAGCATCTGTGGCGGC 61.201 66.667 0.00 0.00 34.92 6.53
3291 3556 2.513204 CCTGAGCATCTGTGGCGG 60.513 66.667 0.00 0.00 34.92 6.13
3292 3557 3.200593 GCCTGAGCATCTGTGGCG 61.201 66.667 0.00 0.00 37.08 5.69
3293 3558 2.827642 GGCCTGAGCATCTGTGGC 60.828 66.667 0.00 0.00 42.61 5.01
3294 3559 2.124403 GGGCCTGAGCATCTGTGG 60.124 66.667 0.84 0.00 42.56 4.17
3295 3560 2.124403 GGGGCCTGAGCATCTGTG 60.124 66.667 0.84 0.00 42.56 3.66
3296 3561 2.611800 TGGGGCCTGAGCATCTGT 60.612 61.111 0.84 0.00 42.56 3.41
3297 3562 2.124403 GTGGGGCCTGAGCATCTG 60.124 66.667 0.84 0.00 42.56 2.90
3298 3563 3.415087 GGTGGGGCCTGAGCATCT 61.415 66.667 0.84 0.00 42.56 2.90
3299 3564 3.731728 TGGTGGGGCCTGAGCATC 61.732 66.667 0.84 0.00 42.56 3.91
3300 3565 4.052518 GTGGTGGGGCCTGAGCAT 62.053 66.667 0.84 0.00 42.56 3.79
3302 3567 4.729918 CAGTGGTGGGGCCTGAGC 62.730 72.222 0.84 0.34 38.35 4.26
3303 3568 4.729918 GCAGTGGTGGGGCCTGAG 62.730 72.222 0.84 0.00 38.35 3.35
3310 3575 4.767255 GCTCTCCGCAGTGGTGGG 62.767 72.222 0.00 0.00 45.10 4.61
3312 3577 3.978723 CTCGCTCTCCGCAGTGGTG 62.979 68.421 0.00 0.00 39.08 4.17
3313 3578 3.753434 CTCGCTCTCCGCAGTGGT 61.753 66.667 0.00 0.00 39.08 4.16
3314 3579 4.504916 CCTCGCTCTCCGCAGTGG 62.505 72.222 0.00 0.00 39.08 4.00
3328 3593 2.266055 CTTGGTGACGAGGGCCTC 59.734 66.667 24.06 24.06 38.28 4.70
3334 3599 2.149803 TACACGGCCTTGGTGACGAG 62.150 60.000 14.57 0.00 41.95 4.18
3335 3600 2.149803 CTACACGGCCTTGGTGACGA 62.150 60.000 14.57 0.00 38.73 4.20
3336 3601 1.736645 CTACACGGCCTTGGTGACG 60.737 63.158 14.57 1.83 38.73 4.35
3337 3602 0.604578 TACTACACGGCCTTGGTGAC 59.395 55.000 14.57 0.00 38.73 3.67
3338 3603 0.892755 CTACTACACGGCCTTGGTGA 59.107 55.000 14.57 0.00 38.73 4.02
3339 3604 0.108329 CCTACTACACGGCCTTGGTG 60.108 60.000 14.57 10.87 41.15 4.17
3340 3605 1.896122 GCCTACTACACGGCCTTGGT 61.896 60.000 14.57 5.31 40.43 3.67
3341 3606 1.153429 GCCTACTACACGGCCTTGG 60.153 63.158 14.57 0.00 40.43 3.61
3342 3607 4.515404 GCCTACTACACGGCCTTG 57.485 61.111 7.87 7.87 40.43 3.61
3346 3611 1.069258 GGATGGCCTACTACACGGC 59.931 63.158 3.32 0.00 45.55 5.68
3347 3612 2.822215 AGGATGGCCTACTACACGG 58.178 57.895 3.32 0.00 44.74 4.94
3360 3625 0.181350 GGTACCCCAGCAAGAGGATG 59.819 60.000 0.00 0.00 0.00 3.51
3361 3626 1.338136 CGGTACCCCAGCAAGAGGAT 61.338 60.000 6.25 0.00 0.00 3.24
3362 3627 1.987855 CGGTACCCCAGCAAGAGGA 60.988 63.158 6.25 0.00 0.00 3.71
3363 3628 2.584608 CGGTACCCCAGCAAGAGG 59.415 66.667 6.25 0.00 0.00 3.69
3364 3629 2.125106 GCGGTACCCCAGCAAGAG 60.125 66.667 6.25 0.00 32.67 2.85
3365 3630 4.077184 CGCGGTACCCCAGCAAGA 62.077 66.667 6.25 0.00 32.67 3.02
3366 3631 4.077184 TCGCGGTACCCCAGCAAG 62.077 66.667 6.13 0.00 32.67 4.01
3367 3632 4.077184 CTCGCGGTACCCCAGCAA 62.077 66.667 6.13 0.00 32.67 3.91
3379 3644 4.856607 GAGAAGGGACGGCTCGCG 62.857 72.222 0.00 0.00 34.50 5.87
3380 3645 4.856607 CGAGAAGGGACGGCTCGC 62.857 72.222 0.00 0.00 45.66 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.