Multiple sequence alignment - TraesCS4A01G064400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G064400 chr4A 100.000 3437 0 0 1 3437 60976739 60973303 0.000000e+00 6348.0
1 TraesCS4A01G064400 chr4B 92.057 1964 126 12 451 2390 500288018 500286061 0.000000e+00 2736.0
2 TraesCS4A01G064400 chr4B 91.228 171 13 1 2437 2605 429597379 429597549 7.420000e-57 231.0
3 TraesCS4A01G064400 chr4D 89.770 2043 138 30 400 2389 403418490 403416466 0.000000e+00 2549.0
4 TraesCS4A01G064400 chr3A 96.267 1018 16 5 2437 3437 662213272 662212260 0.000000e+00 1650.0
5 TraesCS4A01G064400 chr7A 95.972 1018 19 5 2437 3437 586277526 586276514 0.000000e+00 1633.0
6 TraesCS4A01G064400 chr3B 94.428 1023 26 5 2444 3437 430937752 430936732 0.000000e+00 1544.0
7 TraesCS4A01G064400 chr3B 84.825 514 58 9 2439 2935 699800159 699799649 1.840000e-137 499.0
8 TraesCS4A01G064400 chr3B 85.341 498 54 10 2439 2935 480336674 480336195 6.620000e-137 497.0
9 TraesCS4A01G064400 chr3B 74.846 1133 210 39 1112 2222 49362429 49363508 8.750000e-121 444.0
10 TraesCS4A01G064400 chr7D 85.867 467 44 9 2453 2899 529719143 529719607 8.630000e-131 477.0
11 TraesCS4A01G064400 chr7D 95.238 42 2 0 327 368 549877637 549877678 2.210000e-07 67.6
12 TraesCS4A01G064400 chr7D 95.238 42 2 0 327 368 549925436 549925477 2.210000e-07 67.6
13 TraesCS4A01G064400 chr7D 92.857 42 3 0 327 368 550000389 550000430 1.030000e-05 62.1
14 TraesCS4A01G064400 chr7D 92.857 42 2 1 327 368 549952126 549952166 3.700000e-05 60.2
15 TraesCS4A01G064400 chr7D 100.000 29 0 0 378 406 597026424 597026452 2.000000e-03 54.7
16 TraesCS4A01G064400 chr1B 83.932 473 48 18 2439 2904 645945022 645944571 8.810000e-116 427.0
17 TraesCS4A01G064400 chr1B 88.000 50 4 2 327 374 369616336 369616385 1.330000e-04 58.4
18 TraesCS4A01G064400 chr2D 84.667 450 40 14 2461 2904 94447501 94447075 4.100000e-114 422.0
19 TraesCS4A01G064400 chr2D 92.683 41 3 0 365 405 20320670 20320630 3.700000e-05 60.2
20 TraesCS4A01G064400 chr2D 87.500 48 5 1 327 373 195220121 195220074 2.000000e-03 54.7
21 TraesCS4A01G064400 chr5A 91.813 171 12 1 2437 2605 139485095 139484925 1.590000e-58 237.0
22 TraesCS4A01G064400 chr2A 91.228 171 13 1 2437 2605 256198685 256198855 7.420000e-57 231.0
23 TraesCS4A01G064400 chr2A 91.228 171 13 1 2437 2605 668073834 668074004 7.420000e-57 231.0
24 TraesCS4A01G064400 chr2A 90.533 169 14 1 2439 2605 662940617 662940449 4.460000e-54 222.0
25 TraesCS4A01G064400 chr2A 97.059 34 1 0 376 409 10517614 10517581 1.330000e-04 58.4
26 TraesCS4A01G064400 chr6B 90.643 171 14 1 2437 2605 21194100 21194270 3.450000e-55 226.0
27 TraesCS4A01G064400 chr6B 100.000 30 0 0 376 405 389249942 389249913 4.790000e-04 56.5
28 TraesCS4A01G064400 chr6B 100.000 28 0 0 328 355 652761445 652761418 6.000000e-03 52.8
29 TraesCS4A01G064400 chr6B 100.000 28 0 0 328 355 652772192 652772165 6.000000e-03 52.8
30 TraesCS4A01G064400 chr2B 94.531 128 7 0 2777 2904 218064593 218064466 7.520000e-47 198.0
31 TraesCS4A01G064400 chr2B 100.000 30 0 0 376 405 8948123 8948094 4.790000e-04 56.5
32 TraesCS4A01G064400 chr7B 94.872 39 0 1 370 406 439449363 439449401 3.700000e-05 60.2
33 TraesCS4A01G064400 chr6D 97.059 34 1 0 376 409 310393340 310393307 1.330000e-04 58.4
34 TraesCS4A01G064400 chr6D 90.698 43 3 1 327 368 68361426 68361468 4.790000e-04 56.5
35 TraesCS4A01G064400 chr1D 97.059 34 1 0 376 409 41582161 41582128 1.330000e-04 58.4
36 TraesCS4A01G064400 chr1D 100.000 31 0 0 376 406 475249788 475249818 1.330000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G064400 chr4A 60973303 60976739 3436 True 6348 6348 100.000 1 3437 1 chr4A.!!$R1 3436
1 TraesCS4A01G064400 chr4B 500286061 500288018 1957 True 2736 2736 92.057 451 2390 1 chr4B.!!$R1 1939
2 TraesCS4A01G064400 chr4D 403416466 403418490 2024 True 2549 2549 89.770 400 2389 1 chr4D.!!$R1 1989
3 TraesCS4A01G064400 chr3A 662212260 662213272 1012 True 1650 1650 96.267 2437 3437 1 chr3A.!!$R1 1000
4 TraesCS4A01G064400 chr7A 586276514 586277526 1012 True 1633 1633 95.972 2437 3437 1 chr7A.!!$R1 1000
5 TraesCS4A01G064400 chr3B 430936732 430937752 1020 True 1544 1544 94.428 2444 3437 1 chr3B.!!$R1 993
6 TraesCS4A01G064400 chr3B 699799649 699800159 510 True 499 499 84.825 2439 2935 1 chr3B.!!$R3 496
7 TraesCS4A01G064400 chr3B 49362429 49363508 1079 False 444 444 74.846 1112 2222 1 chr3B.!!$F1 1110

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.031585 TCAACTGACGTTCGGTGAGG 59.968 55.0 2.12 0.0 35.86 3.86 F
475 476 0.034896 TTTGGAGACCAACTCGGAGC 59.965 55.0 4.58 0.0 43.82 4.70 F
707 723 0.037447 AAGGTGCTTGCTCTCTTCCC 59.963 55.0 0.00 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1041 1100 0.179127 ACTGATCGGTGTGCAGATCG 60.179 55.0 10.79 10.79 45.26 3.69 R
1545 1611 0.383231 CGATCAGCTTTCCAATGGGC 59.617 55.0 0.00 0.00 0.00 5.36 R
2491 2585 0.112412 AGGGACTGCGGGTTGATTTT 59.888 50.0 0.00 0.00 37.18 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.955061 CAACATACTCAAGTCCAAAATGTTAG 57.045 34.615 7.54 1.96 33.17 2.34
26 27 8.783093 CAACATACTCAAGTCCAAAATGTTAGA 58.217 33.333 7.54 0.00 33.17 2.10
27 28 8.553459 ACATACTCAAGTCCAAAATGTTAGAG 57.447 34.615 0.00 0.00 0.00 2.43
28 29 5.948992 ACTCAAGTCCAAAATGTTAGAGC 57.051 39.130 0.00 0.00 0.00 4.09
29 30 4.762251 ACTCAAGTCCAAAATGTTAGAGCC 59.238 41.667 0.00 0.00 0.00 4.70
30 31 4.079253 TCAAGTCCAAAATGTTAGAGCCC 58.921 43.478 0.00 0.00 0.00 5.19
31 32 3.087370 AGTCCAAAATGTTAGAGCCCC 57.913 47.619 0.00 0.00 0.00 5.80
32 33 2.378547 AGTCCAAAATGTTAGAGCCCCA 59.621 45.455 0.00 0.00 0.00 4.96
33 34 2.755103 GTCCAAAATGTTAGAGCCCCAG 59.245 50.000 0.00 0.00 0.00 4.45
34 35 2.378547 TCCAAAATGTTAGAGCCCCAGT 59.621 45.455 0.00 0.00 0.00 4.00
35 36 3.165071 CCAAAATGTTAGAGCCCCAGTT 58.835 45.455 0.00 0.00 0.00 3.16
36 37 3.056607 CCAAAATGTTAGAGCCCCAGTTG 60.057 47.826 0.00 0.00 0.00 3.16
37 38 2.514458 AATGTTAGAGCCCCAGTTGG 57.486 50.000 0.00 0.00 0.00 3.77
38 39 1.668826 ATGTTAGAGCCCCAGTTGGA 58.331 50.000 0.00 0.00 37.39 3.53
39 40 1.668826 TGTTAGAGCCCCAGTTGGAT 58.331 50.000 0.00 0.00 37.39 3.41
40 41 1.281867 TGTTAGAGCCCCAGTTGGATG 59.718 52.381 0.00 0.00 37.39 3.51
41 42 1.559682 GTTAGAGCCCCAGTTGGATGA 59.440 52.381 0.00 0.00 37.39 2.92
42 43 1.204146 TAGAGCCCCAGTTGGATGAC 58.796 55.000 0.00 0.00 37.39 3.06
43 44 0.548682 AGAGCCCCAGTTGGATGACT 60.549 55.000 0.00 0.00 37.39 3.41
44 45 0.329596 GAGCCCCAGTTGGATGACTT 59.670 55.000 0.00 0.00 37.39 3.01
45 46 0.779997 AGCCCCAGTTGGATGACTTT 59.220 50.000 0.00 0.00 37.39 2.66
46 47 1.147817 AGCCCCAGTTGGATGACTTTT 59.852 47.619 0.00 0.00 37.39 2.27
47 48 1.970640 GCCCCAGTTGGATGACTTTTT 59.029 47.619 0.00 0.00 37.39 1.94
82 83 8.615878 TTTGGGTCTAAATATAATGTCATCGG 57.384 34.615 0.00 0.00 0.00 4.18
83 84 7.311092 TGGGTCTAAATATAATGTCATCGGT 57.689 36.000 0.00 0.00 0.00 4.69
84 85 8.425237 TGGGTCTAAATATAATGTCATCGGTA 57.575 34.615 0.00 0.00 0.00 4.02
85 86 8.872134 TGGGTCTAAATATAATGTCATCGGTAA 58.128 33.333 0.00 0.00 0.00 2.85
86 87 9.886132 GGGTCTAAATATAATGTCATCGGTAAT 57.114 33.333 0.00 0.00 0.00 1.89
95 96 8.846943 ATAATGTCATCGGTAATGCTATTCAA 57.153 30.769 0.00 0.00 35.17 2.69
96 97 5.984233 TGTCATCGGTAATGCTATTCAAC 57.016 39.130 0.00 0.00 35.17 3.18
97 98 5.670485 TGTCATCGGTAATGCTATTCAACT 58.330 37.500 0.00 0.00 35.17 3.16
98 99 5.523552 TGTCATCGGTAATGCTATTCAACTG 59.476 40.000 0.00 0.00 35.17 3.16
99 100 5.753438 GTCATCGGTAATGCTATTCAACTGA 59.247 40.000 0.00 0.00 35.17 3.41
100 101 5.753438 TCATCGGTAATGCTATTCAACTGAC 59.247 40.000 0.00 0.00 35.17 3.51
101 102 4.109766 TCGGTAATGCTATTCAACTGACG 58.890 43.478 0.00 0.00 0.00 4.35
102 103 3.863424 CGGTAATGCTATTCAACTGACGT 59.137 43.478 0.00 0.00 0.00 4.34
103 104 4.328983 CGGTAATGCTATTCAACTGACGTT 59.671 41.667 0.00 0.00 0.00 3.99
104 105 5.500290 CGGTAATGCTATTCAACTGACGTTC 60.500 44.000 0.00 0.00 0.00 3.95
105 106 4.584029 AATGCTATTCAACTGACGTTCG 57.416 40.909 0.00 0.00 0.00 3.95
106 107 2.333926 TGCTATTCAACTGACGTTCGG 58.666 47.619 0.00 0.00 0.00 4.30
107 108 2.288579 TGCTATTCAACTGACGTTCGGT 60.289 45.455 0.00 0.00 37.65 4.69
108 109 2.092211 GCTATTCAACTGACGTTCGGTG 59.908 50.000 0.00 0.00 35.86 4.94
109 110 2.519377 ATTCAACTGACGTTCGGTGA 57.481 45.000 2.12 2.12 35.86 4.02
110 111 1.847818 TTCAACTGACGTTCGGTGAG 58.152 50.000 6.00 1.44 35.86 3.51
111 112 0.031585 TCAACTGACGTTCGGTGAGG 59.968 55.000 2.12 0.00 35.86 3.86
112 113 0.944311 CAACTGACGTTCGGTGAGGG 60.944 60.000 0.00 0.00 35.86 4.30
113 114 2.095978 AACTGACGTTCGGTGAGGGG 62.096 60.000 0.00 0.00 35.86 4.79
114 115 2.203523 TGACGTTCGGTGAGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
115 116 1.605058 CTGACGTTCGGTGAGGGGAT 61.605 60.000 0.00 0.00 0.00 3.85
116 117 1.153628 GACGTTCGGTGAGGGGATG 60.154 63.158 0.00 0.00 0.00 3.51
117 118 1.601419 GACGTTCGGTGAGGGGATGA 61.601 60.000 0.00 0.00 0.00 2.92
118 119 1.153628 CGTTCGGTGAGGGGATGAC 60.154 63.158 0.00 0.00 0.00 3.06
119 120 1.884075 CGTTCGGTGAGGGGATGACA 61.884 60.000 0.00 0.00 0.00 3.58
120 121 0.323629 GTTCGGTGAGGGGATGACAA 59.676 55.000 0.00 0.00 0.00 3.18
121 122 1.060729 TTCGGTGAGGGGATGACAAA 58.939 50.000 0.00 0.00 0.00 2.83
122 123 1.285280 TCGGTGAGGGGATGACAAAT 58.715 50.000 0.00 0.00 0.00 2.32
123 124 1.209504 TCGGTGAGGGGATGACAAATC 59.790 52.381 0.00 0.00 0.00 2.17
124 125 1.668419 GGTGAGGGGATGACAAATCG 58.332 55.000 0.00 0.00 0.00 3.34
125 126 1.209504 GGTGAGGGGATGACAAATCGA 59.790 52.381 0.00 0.00 0.00 3.59
126 127 2.355716 GGTGAGGGGATGACAAATCGAA 60.356 50.000 0.00 0.00 0.00 3.71
127 128 2.678336 GTGAGGGGATGACAAATCGAAC 59.322 50.000 0.00 0.00 0.00 3.95
128 129 1.933853 GAGGGGATGACAAATCGAACG 59.066 52.381 0.00 0.00 0.00 3.95
129 130 1.278127 AGGGGATGACAAATCGAACGT 59.722 47.619 0.00 0.00 0.00 3.99
130 131 2.081462 GGGGATGACAAATCGAACGTT 58.919 47.619 0.00 0.00 0.00 3.99
131 132 2.486592 GGGGATGACAAATCGAACGTTT 59.513 45.455 0.46 0.00 0.00 3.60
132 133 3.057806 GGGGATGACAAATCGAACGTTTT 60.058 43.478 0.46 0.00 0.00 2.43
133 134 4.542735 GGGATGACAAATCGAACGTTTTT 58.457 39.130 0.46 0.00 0.00 1.94
158 159 6.721571 ATGGTAATTTATATTGTCGCGAGG 57.278 37.500 10.24 0.00 0.00 4.63
159 160 5.845103 TGGTAATTTATATTGTCGCGAGGA 58.155 37.500 10.24 0.12 0.00 3.71
160 161 6.460781 TGGTAATTTATATTGTCGCGAGGAT 58.539 36.000 10.24 9.38 0.00 3.24
161 162 6.367695 TGGTAATTTATATTGTCGCGAGGATG 59.632 38.462 10.24 0.00 0.00 3.51
162 163 6.588756 GGTAATTTATATTGTCGCGAGGATGA 59.411 38.462 10.24 0.00 0.00 2.92
163 164 6.467723 AATTTATATTGTCGCGAGGATGAC 57.532 37.500 10.24 0.00 35.67 3.06
164 165 4.848562 TTATATTGTCGCGAGGATGACT 57.151 40.909 10.24 0.00 36.10 3.41
165 166 5.952526 TTATATTGTCGCGAGGATGACTA 57.047 39.130 10.24 0.00 36.10 2.59
166 167 2.493713 ATTGTCGCGAGGATGACTAC 57.506 50.000 10.24 0.00 36.10 2.73
167 168 1.460504 TTGTCGCGAGGATGACTACT 58.539 50.000 10.24 0.00 36.10 2.57
168 169 1.460504 TGTCGCGAGGATGACTACTT 58.539 50.000 10.24 0.00 36.10 2.24
169 170 2.635714 TGTCGCGAGGATGACTACTTA 58.364 47.619 10.24 0.00 36.10 2.24
170 171 3.011818 TGTCGCGAGGATGACTACTTAA 58.988 45.455 10.24 0.00 36.10 1.85
171 172 3.630769 TGTCGCGAGGATGACTACTTAAT 59.369 43.478 10.24 0.00 36.10 1.40
172 173 4.097437 TGTCGCGAGGATGACTACTTAATT 59.903 41.667 10.24 0.00 36.10 1.40
173 174 4.441415 GTCGCGAGGATGACTACTTAATTG 59.559 45.833 10.24 0.00 32.37 2.32
174 175 3.736252 CGCGAGGATGACTACTTAATTGG 59.264 47.826 0.00 0.00 0.00 3.16
175 176 4.694339 GCGAGGATGACTACTTAATTGGT 58.306 43.478 0.00 0.00 0.00 3.67
176 177 5.506815 CGCGAGGATGACTACTTAATTGGTA 60.507 44.000 0.00 0.00 0.00 3.25
177 178 6.278363 GCGAGGATGACTACTTAATTGGTAA 58.722 40.000 0.00 0.00 0.00 2.85
178 179 6.759827 GCGAGGATGACTACTTAATTGGTAAA 59.240 38.462 0.00 0.00 0.00 2.01
179 180 7.254353 GCGAGGATGACTACTTAATTGGTAAAC 60.254 40.741 0.00 0.00 0.00 2.01
180 181 7.762615 CGAGGATGACTACTTAATTGGTAAACA 59.237 37.037 0.00 0.00 0.00 2.83
181 182 8.788325 AGGATGACTACTTAATTGGTAAACAC 57.212 34.615 0.00 0.00 0.00 3.32
182 183 8.380099 AGGATGACTACTTAATTGGTAAACACA 58.620 33.333 0.00 0.00 0.00 3.72
183 184 9.005777 GGATGACTACTTAATTGGTAAACACAA 57.994 33.333 0.00 0.00 0.00 3.33
184 185 9.821662 GATGACTACTTAATTGGTAAACACAAC 57.178 33.333 0.00 0.00 0.00 3.32
185 186 8.734218 TGACTACTTAATTGGTAAACACAACA 57.266 30.769 0.00 0.00 0.00 3.33
186 187 9.175312 TGACTACTTAATTGGTAAACACAACAA 57.825 29.630 0.00 0.00 0.00 2.83
190 191 8.880878 ACTTAATTGGTAAACACAACAAATCC 57.119 30.769 0.00 0.00 0.00 3.01
191 192 8.700973 ACTTAATTGGTAAACACAACAAATCCT 58.299 29.630 0.00 0.00 0.00 3.24
215 216 1.327303 AAAAACCTGAGGCGCATTCA 58.673 45.000 10.83 11.84 0.00 2.57
216 217 1.549203 AAAACCTGAGGCGCATTCAT 58.451 45.000 10.83 0.00 0.00 2.57
217 218 1.098050 AAACCTGAGGCGCATTCATC 58.902 50.000 10.83 0.00 0.00 2.92
218 219 0.035152 AACCTGAGGCGCATTCATCA 60.035 50.000 10.83 4.00 0.00 3.07
219 220 0.182061 ACCTGAGGCGCATTCATCAT 59.818 50.000 10.83 0.00 0.00 2.45
220 221 1.417517 ACCTGAGGCGCATTCATCATA 59.582 47.619 10.83 0.00 0.00 2.15
221 222 1.802960 CCTGAGGCGCATTCATCATAC 59.197 52.381 10.83 0.00 0.00 2.39
222 223 2.549563 CCTGAGGCGCATTCATCATACT 60.550 50.000 10.83 0.00 0.00 2.12
223 224 3.136763 CTGAGGCGCATTCATCATACTT 58.863 45.455 10.83 0.00 0.00 2.24
224 225 2.874086 TGAGGCGCATTCATCATACTTG 59.126 45.455 10.83 0.00 0.00 3.16
225 226 2.874701 GAGGCGCATTCATCATACTTGT 59.125 45.455 10.83 0.00 0.00 3.16
226 227 2.874701 AGGCGCATTCATCATACTTGTC 59.125 45.455 10.83 0.00 0.00 3.18
227 228 2.613595 GGCGCATTCATCATACTTGTCA 59.386 45.455 10.83 0.00 0.00 3.58
228 229 3.065233 GGCGCATTCATCATACTTGTCAA 59.935 43.478 10.83 0.00 0.00 3.18
229 230 4.261322 GGCGCATTCATCATACTTGTCAAT 60.261 41.667 10.83 0.00 0.00 2.57
230 231 5.276270 GCGCATTCATCATACTTGTCAATT 58.724 37.500 0.30 0.00 0.00 2.32
231 232 6.429624 GCGCATTCATCATACTTGTCAATTA 58.570 36.000 0.30 0.00 0.00 1.40
232 233 6.576313 GCGCATTCATCATACTTGTCAATTAG 59.424 38.462 0.30 0.00 0.00 1.73
233 234 7.518848 GCGCATTCATCATACTTGTCAATTAGA 60.519 37.037 0.30 0.00 0.00 2.10
246 247 3.791887 GTCAATTAGACGTGTCATCCTCG 59.208 47.826 0.00 0.00 37.53 4.63
247 248 3.116300 CAATTAGACGTGTCATCCTCGG 58.884 50.000 0.00 0.00 0.00 4.63
248 249 1.830279 TTAGACGTGTCATCCTCGGT 58.170 50.000 0.00 0.00 0.00 4.69
249 250 1.376543 TAGACGTGTCATCCTCGGTC 58.623 55.000 0.00 0.00 0.00 4.79
250 251 0.608308 AGACGTGTCATCCTCGGTCA 60.608 55.000 0.00 0.00 0.00 4.02
251 252 0.242825 GACGTGTCATCCTCGGTCAA 59.757 55.000 0.00 0.00 0.00 3.18
252 253 0.895530 ACGTGTCATCCTCGGTCAAT 59.104 50.000 0.00 0.00 0.00 2.57
253 254 2.097036 ACGTGTCATCCTCGGTCAATA 58.903 47.619 0.00 0.00 0.00 1.90
254 255 2.693591 ACGTGTCATCCTCGGTCAATAT 59.306 45.455 0.00 0.00 0.00 1.28
255 256 3.887110 ACGTGTCATCCTCGGTCAATATA 59.113 43.478 0.00 0.00 0.00 0.86
256 257 4.340097 ACGTGTCATCCTCGGTCAATATAA 59.660 41.667 0.00 0.00 0.00 0.98
257 258 5.163488 ACGTGTCATCCTCGGTCAATATAAA 60.163 40.000 0.00 0.00 0.00 1.40
258 259 5.926542 CGTGTCATCCTCGGTCAATATAAAT 59.073 40.000 0.00 0.00 0.00 1.40
259 260 6.089551 CGTGTCATCCTCGGTCAATATAAATC 59.910 42.308 0.00 0.00 0.00 2.17
260 261 7.155328 GTGTCATCCTCGGTCAATATAAATCT 58.845 38.462 0.00 0.00 0.00 2.40
261 262 7.657761 GTGTCATCCTCGGTCAATATAAATCTT 59.342 37.037 0.00 0.00 0.00 2.40
262 263 7.872993 TGTCATCCTCGGTCAATATAAATCTTC 59.127 37.037 0.00 0.00 0.00 2.87
263 264 7.872993 GTCATCCTCGGTCAATATAAATCTTCA 59.127 37.037 0.00 0.00 0.00 3.02
264 265 8.597167 TCATCCTCGGTCAATATAAATCTTCAT 58.403 33.333 0.00 0.00 0.00 2.57
265 266 8.663025 CATCCTCGGTCAATATAAATCTTCATG 58.337 37.037 0.00 0.00 0.00 3.07
266 267 6.650807 TCCTCGGTCAATATAAATCTTCATGC 59.349 38.462 0.00 0.00 0.00 4.06
267 268 6.427853 CCTCGGTCAATATAAATCTTCATGCA 59.572 38.462 0.00 0.00 0.00 3.96
268 269 7.041167 CCTCGGTCAATATAAATCTTCATGCAA 60.041 37.037 0.00 0.00 0.00 4.08
269 270 8.219546 TCGGTCAATATAAATCTTCATGCAAA 57.780 30.769 0.00 0.00 0.00 3.68
270 271 8.849168 TCGGTCAATATAAATCTTCATGCAAAT 58.151 29.630 0.00 0.00 0.00 2.32
271 272 9.121517 CGGTCAATATAAATCTTCATGCAAATC 57.878 33.333 0.00 0.00 0.00 2.17
272 273 9.415544 GGTCAATATAAATCTTCATGCAAATCC 57.584 33.333 0.00 0.00 0.00 3.01
279 280 7.900782 AAATCTTCATGCAAATCCTTTTCAG 57.099 32.000 0.00 0.00 0.00 3.02
280 281 6.600882 ATCTTCATGCAAATCCTTTTCAGT 57.399 33.333 0.00 0.00 0.00 3.41
281 282 6.409524 TCTTCATGCAAATCCTTTTCAGTT 57.590 33.333 0.00 0.00 0.00 3.16
282 283 6.819284 TCTTCATGCAAATCCTTTTCAGTTT 58.181 32.000 0.00 0.00 0.00 2.66
283 284 6.925165 TCTTCATGCAAATCCTTTTCAGTTTC 59.075 34.615 0.00 0.00 0.00 2.78
284 285 5.540911 TCATGCAAATCCTTTTCAGTTTCC 58.459 37.500 0.00 0.00 0.00 3.13
285 286 5.305128 TCATGCAAATCCTTTTCAGTTTCCT 59.695 36.000 0.00 0.00 0.00 3.36
286 287 5.612725 TGCAAATCCTTTTCAGTTTCCTT 57.387 34.783 0.00 0.00 0.00 3.36
287 288 5.358922 TGCAAATCCTTTTCAGTTTCCTTG 58.641 37.500 0.00 0.00 0.00 3.61
288 289 4.212004 GCAAATCCTTTTCAGTTTCCTTGC 59.788 41.667 0.00 0.00 0.00 4.01
289 290 3.923017 ATCCTTTTCAGTTTCCTTGCG 57.077 42.857 0.00 0.00 0.00 4.85
290 291 2.650322 TCCTTTTCAGTTTCCTTGCGT 58.350 42.857 0.00 0.00 0.00 5.24
291 292 2.616842 TCCTTTTCAGTTTCCTTGCGTC 59.383 45.455 0.00 0.00 0.00 5.19
292 293 2.287608 CCTTTTCAGTTTCCTTGCGTCC 60.288 50.000 0.00 0.00 0.00 4.79
293 294 1.314730 TTTCAGTTTCCTTGCGTCCC 58.685 50.000 0.00 0.00 0.00 4.46
294 295 0.181587 TTCAGTTTCCTTGCGTCCCA 59.818 50.000 0.00 0.00 0.00 4.37
295 296 0.181587 TCAGTTTCCTTGCGTCCCAA 59.818 50.000 0.00 0.00 0.00 4.12
296 297 0.310854 CAGTTTCCTTGCGTCCCAAC 59.689 55.000 0.00 0.00 0.00 3.77
297 298 0.182775 AGTTTCCTTGCGTCCCAACT 59.817 50.000 0.00 0.00 0.00 3.16
298 299 0.310854 GTTTCCTTGCGTCCCAACTG 59.689 55.000 0.00 0.00 0.00 3.16
299 300 0.181587 TTTCCTTGCGTCCCAACTGA 59.818 50.000 0.00 0.00 0.00 3.41
300 301 0.400213 TTCCTTGCGTCCCAACTGAT 59.600 50.000 0.00 0.00 0.00 2.90
301 302 0.321564 TCCTTGCGTCCCAACTGATG 60.322 55.000 0.00 0.00 0.00 3.07
302 303 0.606401 CCTTGCGTCCCAACTGATGT 60.606 55.000 0.00 0.00 0.00 3.06
303 304 1.238439 CTTGCGTCCCAACTGATGTT 58.762 50.000 0.00 0.00 36.75 2.71
304 305 1.197721 CTTGCGTCCCAACTGATGTTC 59.802 52.381 0.00 0.00 33.52 3.18
305 306 0.948623 TGCGTCCCAACTGATGTTCG 60.949 55.000 0.00 0.00 33.52 3.95
306 307 1.787847 CGTCCCAACTGATGTTCGC 59.212 57.895 0.00 0.00 33.52 4.70
307 308 0.670546 CGTCCCAACTGATGTTCGCT 60.671 55.000 0.00 0.00 33.52 4.93
308 309 0.798776 GTCCCAACTGATGTTCGCTG 59.201 55.000 0.00 0.00 33.52 5.18
309 310 0.321564 TCCCAACTGATGTTCGCTGG 60.322 55.000 0.00 0.00 33.52 4.85
310 311 0.606401 CCCAACTGATGTTCGCTGGT 60.606 55.000 0.00 0.00 33.52 4.00
311 312 1.238439 CCAACTGATGTTCGCTGGTT 58.762 50.000 0.00 0.00 33.52 3.67
312 313 2.422597 CCAACTGATGTTCGCTGGTTA 58.577 47.619 0.00 0.00 33.52 2.85
313 314 2.811431 CCAACTGATGTTCGCTGGTTAA 59.189 45.455 0.00 0.00 33.52 2.01
314 315 3.252215 CCAACTGATGTTCGCTGGTTAAA 59.748 43.478 0.00 0.00 33.52 1.52
315 316 4.261405 CCAACTGATGTTCGCTGGTTAAAA 60.261 41.667 0.00 0.00 33.52 1.52
316 317 4.749245 ACTGATGTTCGCTGGTTAAAAG 57.251 40.909 0.00 0.00 0.00 2.27
317 318 3.502211 ACTGATGTTCGCTGGTTAAAAGG 59.498 43.478 0.00 0.00 0.00 3.11
318 319 2.817258 TGATGTTCGCTGGTTAAAAGGG 59.183 45.455 0.00 0.00 0.00 3.95
319 320 2.351706 TGTTCGCTGGTTAAAAGGGT 57.648 45.000 4.14 0.00 0.00 4.34
320 321 2.223745 TGTTCGCTGGTTAAAAGGGTC 58.776 47.619 4.14 1.47 0.00 4.46
321 322 1.538512 GTTCGCTGGTTAAAAGGGTCC 59.461 52.381 4.14 0.00 0.00 4.46
322 323 0.766131 TCGCTGGTTAAAAGGGTCCA 59.234 50.000 0.00 0.00 0.00 4.02
323 324 1.143277 TCGCTGGTTAAAAGGGTCCAA 59.857 47.619 0.00 0.00 0.00 3.53
324 325 2.167662 CGCTGGTTAAAAGGGTCCAAT 58.832 47.619 0.00 0.00 0.00 3.16
325 326 2.094752 CGCTGGTTAAAAGGGTCCAATG 60.095 50.000 0.00 0.00 0.00 2.82
326 327 3.161866 GCTGGTTAAAAGGGTCCAATGA 58.838 45.455 0.00 0.00 0.00 2.57
327 328 3.056821 GCTGGTTAAAAGGGTCCAATGAC 60.057 47.826 0.00 0.00 40.98 3.06
336 337 2.267045 GTCCAATGACCAAGTGGCC 58.733 57.895 0.00 0.00 39.32 5.36
337 338 0.539438 GTCCAATGACCAAGTGGCCA 60.539 55.000 0.00 0.00 39.32 5.36
338 339 0.251297 TCCAATGACCAAGTGGCCAG 60.251 55.000 5.11 0.00 39.32 4.85
339 340 1.588082 CAATGACCAAGTGGCCAGC 59.412 57.895 5.11 0.39 39.32 4.85
340 341 0.896940 CAATGACCAAGTGGCCAGCT 60.897 55.000 5.11 3.37 39.32 4.24
341 342 0.178953 AATGACCAAGTGGCCAGCTT 60.179 50.000 5.11 10.42 39.32 3.74
342 343 0.896940 ATGACCAAGTGGCCAGCTTG 60.897 55.000 27.60 27.60 42.00 4.01
345 346 4.819783 CAAGTGGCCAGCTTGGTA 57.180 55.556 27.19 0.00 40.46 3.25
346 347 3.034924 CAAGTGGCCAGCTTGGTAA 57.965 52.632 27.19 0.00 40.46 2.85
347 348 0.883833 CAAGTGGCCAGCTTGGTAAG 59.116 55.000 27.19 11.57 40.46 2.34
383 384 9.261318 GAAATTACAATTAAAAAGCGGATTTGC 57.739 29.630 0.00 0.00 0.00 3.68
385 386 9.646427 AATTACAATTAAAAAGCGGATTTGCTA 57.354 25.926 0.00 0.00 46.60 3.49
386 387 9.816354 ATTACAATTAAAAAGCGGATTTGCTAT 57.184 25.926 0.00 0.00 46.60 2.97
387 388 9.646427 TTACAATTAAAAAGCGGATTTGCTATT 57.354 25.926 0.00 0.00 46.60 1.73
388 389 8.546597 ACAATTAAAAAGCGGATTTGCTATTT 57.453 26.923 0.00 0.00 46.60 1.40
389 390 8.998377 ACAATTAAAAAGCGGATTTGCTATTTT 58.002 25.926 0.00 10.83 46.60 1.82
392 393 9.646427 ATTAAAAAGCGGATTTGCTATTTTACA 57.354 25.926 0.00 7.29 46.60 2.41
393 394 7.581011 AAAAAGCGGATTTGCTATTTTACAG 57.419 32.000 0.00 0.00 46.60 2.74
394 395 5.897377 AAGCGGATTTGCTATTTTACAGT 57.103 34.783 0.00 0.00 46.60 3.55
395 396 5.485662 AGCGGATTTGCTATTTTACAGTC 57.514 39.130 0.00 0.00 45.14 3.51
396 397 4.034048 AGCGGATTTGCTATTTTACAGTCG 59.966 41.667 0.00 0.00 45.14 4.18
397 398 4.033587 GCGGATTTGCTATTTTACAGTCGA 59.966 41.667 0.00 0.00 0.00 4.20
398 399 5.728255 CGGATTTGCTATTTTACAGTCGAG 58.272 41.667 0.00 0.00 0.00 4.04
399 400 5.291128 CGGATTTGCTATTTTACAGTCGAGT 59.709 40.000 0.00 0.00 0.00 4.18
400 401 6.478588 GGATTTGCTATTTTACAGTCGAGTG 58.521 40.000 18.72 18.72 0.00 3.51
401 402 6.092259 GGATTTGCTATTTTACAGTCGAGTGT 59.908 38.462 27.74 27.74 34.21 3.55
402 403 6.854496 TTTGCTATTTTACAGTCGAGTGTT 57.146 33.333 29.55 15.00 31.46 3.32
403 404 6.854496 TTGCTATTTTACAGTCGAGTGTTT 57.146 33.333 29.55 15.02 31.46 2.83
404 405 6.854496 TGCTATTTTACAGTCGAGTGTTTT 57.146 33.333 29.55 14.71 31.46 2.43
405 406 7.254227 TGCTATTTTACAGTCGAGTGTTTTT 57.746 32.000 29.55 15.02 31.46 1.94
406 407 7.129622 TGCTATTTTACAGTCGAGTGTTTTTG 58.870 34.615 29.55 15.95 31.46 2.44
407 408 7.011576 TGCTATTTTACAGTCGAGTGTTTTTGA 59.988 33.333 29.55 9.89 31.46 2.69
408 409 7.853929 GCTATTTTACAGTCGAGTGTTTTTGAA 59.146 33.333 29.55 15.30 31.46 2.69
409 410 9.710979 CTATTTTACAGTCGAGTGTTTTTGAAA 57.289 29.630 29.55 19.85 31.46 2.69
410 411 8.973835 ATTTTACAGTCGAGTGTTTTTGAAAA 57.026 26.923 29.55 25.76 31.46 2.29
475 476 0.034896 TTTGGAGACCAACTCGGAGC 59.965 55.000 4.58 0.00 43.82 4.70
496 497 1.444553 CAGCTCAGGTCGGTTCGTC 60.445 63.158 0.00 0.00 0.00 4.20
597 612 1.104577 AATCCTCCGCTCTCCTCGTC 61.105 60.000 0.00 0.00 0.00 4.20
637 652 3.771160 AAGCGCCGACGGAAGGAT 61.771 61.111 20.50 0.85 40.57 3.24
638 653 3.310860 AAGCGCCGACGGAAGGATT 62.311 57.895 20.50 7.91 40.57 3.01
707 723 0.037447 AAGGTGCTTGCTCTCTTCCC 59.963 55.000 0.00 0.00 0.00 3.97
759 778 7.316544 ACAATACAAGTAAACGGATTCATCC 57.683 36.000 0.00 0.00 43.65 3.51
775 794 7.404565 GGATTCATCCCTAATTCGGTTCGAAA 61.405 42.308 0.00 0.00 43.83 3.46
824 844 1.474077 GCCTTTTGATCTCGGCATTGT 59.526 47.619 9.29 0.00 42.06 2.71
901 933 1.043673 ATCTACCCTGTCCACGCCTC 61.044 60.000 0.00 0.00 0.00 4.70
911 943 1.301401 CCACGCCTCAAAAGGTCGA 60.301 57.895 12.82 0.00 45.34 4.20
916 948 3.123674 CCTCAAAAGGTCGAGGTCG 57.876 57.895 0.00 0.00 43.32 4.79
978 1037 2.044352 GCCCCATTACAGCCGGTT 60.044 61.111 1.90 0.00 0.00 4.44
993 1052 0.686769 CGGTTGGCTAGGGGAGTACT 60.687 60.000 0.00 0.00 0.00 2.73
1025 1084 1.135199 GGTCTTAATCGTCACCAGCGA 60.135 52.381 0.00 0.00 42.75 4.93
1041 1100 4.403976 GAGGGCGATCTCGTTGTC 57.596 61.111 1.14 0.00 42.22 3.18
1047 1106 1.116436 GCGATCTCGTTGTCGATCTG 58.884 55.000 9.51 0.00 45.21 2.90
1083 1142 1.202842 CCCCGAACCACCTACAACTTT 60.203 52.381 0.00 0.00 0.00 2.66
1113 1172 5.814705 GCTCTGCAAGATGAAGTACTACAAT 59.185 40.000 0.00 0.00 45.62 2.71
1248 1307 3.363673 GGTTTTTCAACGACGAGATCCAC 60.364 47.826 0.00 0.00 33.13 4.02
1272 1331 3.064545 CGGAACTGAGGCATTCAAAGATC 59.935 47.826 0.00 0.00 34.81 2.75
1527 1593 0.107606 ATCCTGCTGAGCTTGCTGAG 60.108 55.000 5.83 4.75 0.00 3.35
1545 1611 2.813754 TGAGCTTGTTCCTCCAAATTCG 59.186 45.455 0.00 0.00 0.00 3.34
1559 1625 1.560505 AATTCGCCCATTGGAAAGCT 58.439 45.000 3.62 0.00 0.00 3.74
1574 1640 2.215907 AAGCTGATCGACGAGATTGG 57.784 50.000 3.01 0.00 40.26 3.16
1628 1694 1.168714 GATGAAACAGTGGACCCTGC 58.831 55.000 9.24 0.00 35.83 4.85
1830 1908 2.469516 ATCGGCCGAAACAATCCGC 61.470 57.895 34.66 0.00 41.49 5.54
1938 2016 4.578871 ACAATTGTCTGATTGATGACCGA 58.421 39.130 4.92 0.00 38.93 4.69
1983 2061 0.248296 GCGTTTCAAAGTTGTGGCGA 60.248 50.000 0.00 0.00 0.00 5.54
2031 2109 4.261994 GCAAGTAAAGATGGGTGCTTCAAA 60.262 41.667 0.00 0.00 0.00 2.69
2032 2110 5.464168 CAAGTAAAGATGGGTGCTTCAAAG 58.536 41.667 0.00 0.00 0.00 2.77
2046 2124 0.038166 TCAAAGGTCATGCCCCTGAC 59.962 55.000 4.71 3.30 43.90 3.51
2051 2129 1.271840 GGTCATGCCCCTGACTACCA 61.272 60.000 10.00 0.00 44.05 3.25
2074 2152 2.330216 CCCGAGATCTGGATAAGGGTT 58.670 52.381 6.27 0.00 33.00 4.11
2148 2226 3.116531 GGTGGCAGTAACCGTCGC 61.117 66.667 0.00 0.00 0.00 5.19
2379 2472 8.138365 GATCTAGTGATCGAAGCTATAGTAGG 57.862 42.308 0.84 0.00 39.56 3.18
2390 2483 3.322254 AGCTATAGTAGGCGCAACAATCT 59.678 43.478 10.83 0.00 0.00 2.40
2391 2484 4.058817 GCTATAGTAGGCGCAACAATCTT 58.941 43.478 10.83 0.00 0.00 2.40
2392 2485 4.511826 GCTATAGTAGGCGCAACAATCTTT 59.488 41.667 10.83 0.00 0.00 2.52
2393 2486 5.333416 GCTATAGTAGGCGCAACAATCTTTC 60.333 44.000 10.83 0.00 0.00 2.62
2394 2487 2.084546 AGTAGGCGCAACAATCTTTCC 58.915 47.619 10.83 0.00 0.00 3.13
2395 2488 1.132453 GTAGGCGCAACAATCTTTCCC 59.868 52.381 10.83 0.00 0.00 3.97
2396 2489 0.251341 AGGCGCAACAATCTTTCCCT 60.251 50.000 10.83 0.00 0.00 4.20
2397 2490 0.171231 GGCGCAACAATCTTTCCCTC 59.829 55.000 10.83 0.00 0.00 4.30
2398 2491 1.168714 GCGCAACAATCTTTCCCTCT 58.831 50.000 0.30 0.00 0.00 3.69
2399 2492 1.541588 GCGCAACAATCTTTCCCTCTT 59.458 47.619 0.30 0.00 0.00 2.85
2400 2493 2.029918 GCGCAACAATCTTTCCCTCTTT 60.030 45.455 0.30 0.00 0.00 2.52
2401 2494 3.826466 CGCAACAATCTTTCCCTCTTTC 58.174 45.455 0.00 0.00 0.00 2.62
2402 2495 3.366374 CGCAACAATCTTTCCCTCTTTCC 60.366 47.826 0.00 0.00 0.00 3.13
2403 2496 3.056536 GCAACAATCTTTCCCTCTTTCCC 60.057 47.826 0.00 0.00 0.00 3.97
2404 2497 4.411013 CAACAATCTTTCCCTCTTTCCCT 58.589 43.478 0.00 0.00 0.00 4.20
2405 2498 4.308526 ACAATCTTTCCCTCTTTCCCTC 57.691 45.455 0.00 0.00 0.00 4.30
2406 2499 3.010696 ACAATCTTTCCCTCTTTCCCTCC 59.989 47.826 0.00 0.00 0.00 4.30
2407 2500 1.670059 TCTTTCCCTCTTTCCCTCCC 58.330 55.000 0.00 0.00 0.00 4.30
2408 2501 1.154434 TCTTTCCCTCTTTCCCTCCCT 59.846 52.381 0.00 0.00 0.00 4.20
2409 2502 2.389267 TCTTTCCCTCTTTCCCTCCCTA 59.611 50.000 0.00 0.00 0.00 3.53
2410 2503 3.015275 TCTTTCCCTCTTTCCCTCCCTAT 59.985 47.826 0.00 0.00 0.00 2.57
2411 2504 4.236821 TCTTTCCCTCTTTCCCTCCCTATA 59.763 45.833 0.00 0.00 0.00 1.31
2412 2505 4.871806 TTCCCTCTTTCCCTCCCTATAT 57.128 45.455 0.00 0.00 0.00 0.86
2413 2506 5.980040 TTCCCTCTTTCCCTCCCTATATA 57.020 43.478 0.00 0.00 0.00 0.86
2414 2507 6.515763 TTCCCTCTTTCCCTCCCTATATAT 57.484 41.667 0.00 0.00 0.00 0.86
2415 2508 6.106407 TCCCTCTTTCCCTCCCTATATATC 57.894 45.833 0.00 0.00 0.00 1.63
2416 2509 5.042523 TCCCTCTTTCCCTCCCTATATATCC 60.043 48.000 0.00 0.00 0.00 2.59
2417 2510 5.220521 CCTCTTTCCCTCCCTATATATCCC 58.779 50.000 0.00 0.00 0.00 3.85
2418 2511 5.042218 CCTCTTTCCCTCCCTATATATCCCT 60.042 48.000 0.00 0.00 0.00 4.20
2419 2512 6.106407 TCTTTCCCTCCCTATATATCCCTC 57.894 45.833 0.00 0.00 0.00 4.30
2420 2513 4.920781 TTCCCTCCCTATATATCCCTCC 57.079 50.000 0.00 0.00 0.00 4.30
2421 2514 3.148331 TCCCTCCCTATATATCCCTCCC 58.852 54.545 0.00 0.00 0.00 4.30
2422 2515 3.151634 CCCTCCCTATATATCCCTCCCT 58.848 54.545 0.00 0.00 0.00 4.20
2423 2516 4.011682 TCCCTCCCTATATATCCCTCCCTA 60.012 50.000 0.00 0.00 0.00 3.53
2424 2517 4.935840 CCCTCCCTATATATCCCTCCCTAT 59.064 50.000 0.00 0.00 0.00 2.57
2425 2518 6.113162 CCCTCCCTATATATCCCTCCCTATA 58.887 48.000 0.00 0.00 0.00 1.31
2426 2519 6.752639 CCCTCCCTATATATCCCTCCCTATAT 59.247 46.154 0.00 0.00 0.00 0.86
2427 2520 7.923867 CCCTCCCTATATATCCCTCCCTATATA 59.076 44.444 0.00 0.00 0.00 0.86
2428 2521 9.555083 CCTCCCTATATATCCCTCCCTATATAT 57.445 40.741 0.00 0.00 36.03 0.86
2490 2584 3.690628 CGAAAAAGCCCCTCGGTTTATAA 59.309 43.478 0.00 0.00 41.28 0.98
2491 2585 4.156373 CGAAAAAGCCCCTCGGTTTATAAA 59.844 41.667 0.00 0.00 41.28 1.40
2520 2614 2.093128 CCCGCAGTCCCTGTTTTAGTAT 60.093 50.000 0.00 0.00 33.43 2.12
2521 2615 2.936498 CCGCAGTCCCTGTTTTAGTATG 59.064 50.000 0.00 0.00 33.43 2.39
2522 2616 2.936498 CGCAGTCCCTGTTTTAGTATGG 59.064 50.000 0.00 0.00 33.43 2.74
2527 2621 4.470304 AGTCCCTGTTTTAGTATGGGTCTC 59.530 45.833 0.00 0.00 38.95 3.36
2920 3054 3.024784 CGCTGCTTTCTGTGCACA 58.975 55.556 20.37 20.37 36.37 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.783093 TCTAACATTTTGGACTTGAGTATGTTG 58.217 33.333 14.77 8.39 34.78 3.33
2 3 7.119846 GCTCTAACATTTTGGACTTGAGTATGT 59.880 37.037 0.00 0.00 0.00 2.29
3 4 7.414540 GGCTCTAACATTTTGGACTTGAGTATG 60.415 40.741 0.00 0.00 0.00 2.39
4 5 6.599638 GGCTCTAACATTTTGGACTTGAGTAT 59.400 38.462 0.00 0.00 0.00 2.12
5 6 5.938125 GGCTCTAACATTTTGGACTTGAGTA 59.062 40.000 0.00 0.00 0.00 2.59
6 7 4.762251 GGCTCTAACATTTTGGACTTGAGT 59.238 41.667 0.00 0.00 0.00 3.41
7 8 4.156739 GGGCTCTAACATTTTGGACTTGAG 59.843 45.833 0.00 0.00 0.00 3.02
8 9 4.079253 GGGCTCTAACATTTTGGACTTGA 58.921 43.478 0.00 0.00 0.00 3.02
9 10 3.193479 GGGGCTCTAACATTTTGGACTTG 59.807 47.826 0.00 0.00 0.00 3.16
13 14 2.378547 ACTGGGGCTCTAACATTTTGGA 59.621 45.455 0.00 0.00 0.00 3.53
14 15 2.807676 ACTGGGGCTCTAACATTTTGG 58.192 47.619 0.00 0.00 0.00 3.28
15 16 3.056607 CCAACTGGGGCTCTAACATTTTG 60.057 47.826 0.00 0.00 0.00 2.44
16 17 3.165071 CCAACTGGGGCTCTAACATTTT 58.835 45.455 0.00 0.00 0.00 1.82
17 18 2.378547 TCCAACTGGGGCTCTAACATTT 59.621 45.455 0.00 0.00 37.22 2.32
18 19 1.992557 TCCAACTGGGGCTCTAACATT 59.007 47.619 0.00 0.00 37.22 2.71
19 20 1.668826 TCCAACTGGGGCTCTAACAT 58.331 50.000 0.00 0.00 37.22 2.71
20 21 1.281867 CATCCAACTGGGGCTCTAACA 59.718 52.381 0.00 0.00 37.22 2.41
21 22 1.559682 TCATCCAACTGGGGCTCTAAC 59.440 52.381 0.00 0.00 37.22 2.34
22 23 1.559682 GTCATCCAACTGGGGCTCTAA 59.440 52.381 0.00 0.00 37.22 2.10
23 24 1.204146 GTCATCCAACTGGGGCTCTA 58.796 55.000 0.00 0.00 37.22 2.43
24 25 0.548682 AGTCATCCAACTGGGGCTCT 60.549 55.000 0.00 0.00 37.22 4.09
25 26 0.329596 AAGTCATCCAACTGGGGCTC 59.670 55.000 0.00 0.00 37.22 4.70
26 27 0.779997 AAAGTCATCCAACTGGGGCT 59.220 50.000 0.00 0.00 37.22 5.19
27 28 1.632589 AAAAGTCATCCAACTGGGGC 58.367 50.000 0.00 0.00 37.22 5.80
56 57 9.062524 CCGATGACATTATATTTAGACCCAAAA 57.937 33.333 0.00 0.00 0.00 2.44
57 58 8.215050 ACCGATGACATTATATTTAGACCCAAA 58.785 33.333 0.00 0.00 0.00 3.28
58 59 7.741785 ACCGATGACATTATATTTAGACCCAA 58.258 34.615 0.00 0.00 0.00 4.12
59 60 7.311092 ACCGATGACATTATATTTAGACCCA 57.689 36.000 0.00 0.00 0.00 4.51
60 61 9.886132 ATTACCGATGACATTATATTTAGACCC 57.114 33.333 0.00 0.00 0.00 4.46
69 70 9.936759 TTGAATAGCATTACCGATGACATTATA 57.063 29.630 0.00 0.00 38.03 0.98
70 71 8.721478 GTTGAATAGCATTACCGATGACATTAT 58.279 33.333 0.00 0.00 38.03 1.28
71 72 7.931407 AGTTGAATAGCATTACCGATGACATTA 59.069 33.333 0.00 0.00 38.03 1.90
72 73 6.767902 AGTTGAATAGCATTACCGATGACATT 59.232 34.615 0.00 0.00 38.03 2.71
73 74 6.203530 CAGTTGAATAGCATTACCGATGACAT 59.796 38.462 0.00 0.00 38.03 3.06
74 75 5.523552 CAGTTGAATAGCATTACCGATGACA 59.476 40.000 0.00 0.00 38.03 3.58
75 76 5.753438 TCAGTTGAATAGCATTACCGATGAC 59.247 40.000 0.00 0.00 38.03 3.06
76 77 5.753438 GTCAGTTGAATAGCATTACCGATGA 59.247 40.000 0.00 0.00 38.03 2.92
77 78 5.332581 CGTCAGTTGAATAGCATTACCGATG 60.333 44.000 0.00 0.00 38.85 3.84
78 79 4.745125 CGTCAGTTGAATAGCATTACCGAT 59.255 41.667 0.00 0.00 0.00 4.18
79 80 4.109766 CGTCAGTTGAATAGCATTACCGA 58.890 43.478 0.00 0.00 0.00 4.69
80 81 3.863424 ACGTCAGTTGAATAGCATTACCG 59.137 43.478 0.00 0.00 0.00 4.02
81 82 5.500290 CGAACGTCAGTTGAATAGCATTACC 60.500 44.000 0.00 0.00 41.34 2.85
82 83 5.481472 CGAACGTCAGTTGAATAGCATTAC 58.519 41.667 0.00 0.00 41.34 1.89
83 84 4.565166 CCGAACGTCAGTTGAATAGCATTA 59.435 41.667 0.00 0.00 41.34 1.90
84 85 3.370978 CCGAACGTCAGTTGAATAGCATT 59.629 43.478 0.00 0.00 41.34 3.56
85 86 2.930040 CCGAACGTCAGTTGAATAGCAT 59.070 45.455 0.00 0.00 41.34 3.79
86 87 2.288579 ACCGAACGTCAGTTGAATAGCA 60.289 45.455 0.00 0.00 41.34 3.49
87 88 2.092211 CACCGAACGTCAGTTGAATAGC 59.908 50.000 0.00 0.00 41.34 2.97
88 89 3.571571 TCACCGAACGTCAGTTGAATAG 58.428 45.455 0.00 0.00 41.34 1.73
89 90 3.571571 CTCACCGAACGTCAGTTGAATA 58.428 45.455 0.00 0.00 41.34 1.75
90 91 2.404215 CTCACCGAACGTCAGTTGAAT 58.596 47.619 0.00 0.00 41.34 2.57
91 92 1.537348 CCTCACCGAACGTCAGTTGAA 60.537 52.381 0.00 0.00 41.34 2.69
92 93 0.031585 CCTCACCGAACGTCAGTTGA 59.968 55.000 0.00 0.00 41.34 3.18
93 94 0.944311 CCCTCACCGAACGTCAGTTG 60.944 60.000 0.00 0.00 41.34 3.16
94 95 1.366366 CCCTCACCGAACGTCAGTT 59.634 57.895 0.00 0.00 44.47 3.16
95 96 2.571216 CCCCTCACCGAACGTCAGT 61.571 63.158 0.00 0.00 0.00 3.41
96 97 1.605058 ATCCCCTCACCGAACGTCAG 61.605 60.000 0.00 0.00 0.00 3.51
97 98 1.608336 ATCCCCTCACCGAACGTCA 60.608 57.895 0.00 0.00 0.00 4.35
98 99 1.153628 CATCCCCTCACCGAACGTC 60.154 63.158 0.00 0.00 0.00 4.34
99 100 1.608336 TCATCCCCTCACCGAACGT 60.608 57.895 0.00 0.00 0.00 3.99
100 101 1.153628 GTCATCCCCTCACCGAACG 60.154 63.158 0.00 0.00 0.00 3.95
101 102 0.323629 TTGTCATCCCCTCACCGAAC 59.676 55.000 0.00 0.00 0.00 3.95
102 103 1.060729 TTTGTCATCCCCTCACCGAA 58.939 50.000 0.00 0.00 0.00 4.30
103 104 1.209504 GATTTGTCATCCCCTCACCGA 59.790 52.381 0.00 0.00 0.00 4.69
104 105 1.668419 GATTTGTCATCCCCTCACCG 58.332 55.000 0.00 0.00 0.00 4.94
105 106 1.209504 TCGATTTGTCATCCCCTCACC 59.790 52.381 0.00 0.00 0.00 4.02
106 107 2.678336 GTTCGATTTGTCATCCCCTCAC 59.322 50.000 0.00 0.00 0.00 3.51
107 108 2.676750 CGTTCGATTTGTCATCCCCTCA 60.677 50.000 0.00 0.00 0.00 3.86
108 109 1.933853 CGTTCGATTTGTCATCCCCTC 59.066 52.381 0.00 0.00 0.00 4.30
109 110 1.278127 ACGTTCGATTTGTCATCCCCT 59.722 47.619 0.00 0.00 0.00 4.79
110 111 1.734163 ACGTTCGATTTGTCATCCCC 58.266 50.000 0.00 0.00 0.00 4.81
111 112 3.824414 AAACGTTCGATTTGTCATCCC 57.176 42.857 0.00 0.00 0.00 3.85
132 133 8.714179 CCTCGCGACAATATAAATTACCATAAA 58.286 33.333 3.71 0.00 0.00 1.40
133 134 8.089597 TCCTCGCGACAATATAAATTACCATAA 58.910 33.333 3.71 0.00 0.00 1.90
134 135 7.604549 TCCTCGCGACAATATAAATTACCATA 58.395 34.615 3.71 0.00 0.00 2.74
135 136 6.460781 TCCTCGCGACAATATAAATTACCAT 58.539 36.000 3.71 0.00 0.00 3.55
136 137 5.845103 TCCTCGCGACAATATAAATTACCA 58.155 37.500 3.71 0.00 0.00 3.25
137 138 6.588756 TCATCCTCGCGACAATATAAATTACC 59.411 38.462 3.71 0.00 0.00 2.85
138 139 7.328737 AGTCATCCTCGCGACAATATAAATTAC 59.671 37.037 3.71 0.00 34.48 1.89
139 140 7.375834 AGTCATCCTCGCGACAATATAAATTA 58.624 34.615 3.71 0.00 34.48 1.40
140 141 6.223852 AGTCATCCTCGCGACAATATAAATT 58.776 36.000 3.71 0.00 34.48 1.82
141 142 5.784177 AGTCATCCTCGCGACAATATAAAT 58.216 37.500 3.71 0.00 34.48 1.40
142 143 5.196341 AGTCATCCTCGCGACAATATAAA 57.804 39.130 3.71 0.00 34.48 1.40
143 144 4.848562 AGTCATCCTCGCGACAATATAA 57.151 40.909 3.71 0.00 34.48 0.98
144 145 5.001874 AGTAGTCATCCTCGCGACAATATA 58.998 41.667 3.71 0.00 34.48 0.86
145 146 3.821600 AGTAGTCATCCTCGCGACAATAT 59.178 43.478 3.71 0.00 34.48 1.28
146 147 3.211865 AGTAGTCATCCTCGCGACAATA 58.788 45.455 3.71 0.00 34.48 1.90
147 148 2.025155 AGTAGTCATCCTCGCGACAAT 58.975 47.619 3.71 0.00 34.48 2.71
148 149 1.460504 AGTAGTCATCCTCGCGACAA 58.539 50.000 3.71 0.00 34.48 3.18
149 150 1.460504 AAGTAGTCATCCTCGCGACA 58.539 50.000 3.71 0.00 34.48 4.35
150 151 3.687572 TTAAGTAGTCATCCTCGCGAC 57.312 47.619 3.71 0.00 0.00 5.19
151 152 4.499188 CCAATTAAGTAGTCATCCTCGCGA 60.499 45.833 9.26 9.26 0.00 5.87
152 153 3.736252 CCAATTAAGTAGTCATCCTCGCG 59.264 47.826 0.00 0.00 0.00 5.87
153 154 4.694339 ACCAATTAAGTAGTCATCCTCGC 58.306 43.478 0.00 0.00 0.00 5.03
154 155 7.762615 TGTTTACCAATTAAGTAGTCATCCTCG 59.237 37.037 0.00 0.00 0.00 4.63
155 156 8.880750 GTGTTTACCAATTAAGTAGTCATCCTC 58.119 37.037 0.00 0.00 0.00 3.71
156 157 8.380099 TGTGTTTACCAATTAAGTAGTCATCCT 58.620 33.333 0.00 0.00 0.00 3.24
157 158 8.556213 TGTGTTTACCAATTAAGTAGTCATCC 57.444 34.615 0.00 0.00 0.00 3.51
158 159 9.821662 GTTGTGTTTACCAATTAAGTAGTCATC 57.178 33.333 0.00 0.00 0.00 2.92
159 160 9.344772 TGTTGTGTTTACCAATTAAGTAGTCAT 57.655 29.630 0.00 0.00 0.00 3.06
160 161 8.734218 TGTTGTGTTTACCAATTAAGTAGTCA 57.266 30.769 0.00 0.00 0.00 3.41
164 165 9.968870 GGATTTGTTGTGTTTACCAATTAAGTA 57.031 29.630 0.00 0.00 0.00 2.24
165 166 8.700973 AGGATTTGTTGTGTTTACCAATTAAGT 58.299 29.630 0.00 0.00 0.00 2.24
196 197 1.327303 TGAATGCGCCTCAGGTTTTT 58.673 45.000 4.18 0.00 0.00 1.94
197 198 1.474077 GATGAATGCGCCTCAGGTTTT 59.526 47.619 4.18 0.00 0.00 2.43
198 199 1.098050 GATGAATGCGCCTCAGGTTT 58.902 50.000 4.18 0.00 0.00 3.27
199 200 0.035152 TGATGAATGCGCCTCAGGTT 60.035 50.000 4.18 0.00 0.00 3.50
200 201 0.182061 ATGATGAATGCGCCTCAGGT 59.818 50.000 4.18 0.00 0.00 4.00
201 202 1.802960 GTATGATGAATGCGCCTCAGG 59.197 52.381 4.18 0.00 0.00 3.86
202 203 2.763933 AGTATGATGAATGCGCCTCAG 58.236 47.619 4.18 0.00 0.00 3.35
203 204 2.874086 CAAGTATGATGAATGCGCCTCA 59.126 45.455 4.18 8.54 0.00 3.86
204 205 2.874701 ACAAGTATGATGAATGCGCCTC 59.125 45.455 4.18 1.56 0.00 4.70
205 206 2.874701 GACAAGTATGATGAATGCGCCT 59.125 45.455 4.18 0.00 0.00 5.52
206 207 2.613595 TGACAAGTATGATGAATGCGCC 59.386 45.455 4.18 0.00 0.00 6.53
207 208 3.950087 TGACAAGTATGATGAATGCGC 57.050 42.857 0.00 0.00 0.00 6.09
208 209 7.795734 GTCTAATTGACAAGTATGATGAATGCG 59.204 37.037 0.00 0.00 44.73 4.73
209 210 7.795734 CGTCTAATTGACAAGTATGATGAATGC 59.204 37.037 0.00 0.00 45.60 3.56
210 211 8.820933 ACGTCTAATTGACAAGTATGATGAATG 58.179 33.333 15.14 3.39 45.60 2.67
211 212 8.820933 CACGTCTAATTGACAAGTATGATGAAT 58.179 33.333 15.14 0.00 45.60 2.57
212 213 7.817478 ACACGTCTAATTGACAAGTATGATGAA 59.183 33.333 15.14 0.00 45.60 2.57
213 214 7.320399 ACACGTCTAATTGACAAGTATGATGA 58.680 34.615 15.14 1.70 45.60 2.92
214 215 7.275560 TGACACGTCTAATTGACAAGTATGATG 59.724 37.037 0.00 4.81 45.60 3.07
215 216 7.320399 TGACACGTCTAATTGACAAGTATGAT 58.680 34.615 0.00 0.00 45.60 2.45
216 217 6.683715 TGACACGTCTAATTGACAAGTATGA 58.316 36.000 0.00 0.00 45.60 2.15
217 218 6.944557 TGACACGTCTAATTGACAAGTATG 57.055 37.500 0.00 0.00 45.60 2.39
218 219 6.757010 GGATGACACGTCTAATTGACAAGTAT 59.243 38.462 0.00 0.00 45.60 2.12
219 220 6.071560 AGGATGACACGTCTAATTGACAAGTA 60.072 38.462 0.00 0.00 45.60 2.24
220 221 4.929808 GGATGACACGTCTAATTGACAAGT 59.070 41.667 0.00 0.00 45.60 3.16
221 222 5.171476 AGGATGACACGTCTAATTGACAAG 58.829 41.667 0.00 3.48 45.60 3.16
222 223 5.147330 AGGATGACACGTCTAATTGACAA 57.853 39.130 0.00 0.00 45.60 3.18
223 224 4.674362 CGAGGATGACACGTCTAATTGACA 60.674 45.833 0.00 0.00 45.60 3.58
224 225 3.791887 CGAGGATGACACGTCTAATTGAC 59.208 47.826 0.00 0.00 42.06 3.18
225 226 3.181490 CCGAGGATGACACGTCTAATTGA 60.181 47.826 0.00 0.00 0.00 2.57
226 227 3.116300 CCGAGGATGACACGTCTAATTG 58.884 50.000 0.00 0.00 0.00 2.32
227 228 2.758979 ACCGAGGATGACACGTCTAATT 59.241 45.455 0.00 0.00 0.00 1.40
228 229 2.358267 GACCGAGGATGACACGTCTAAT 59.642 50.000 0.00 0.00 0.00 1.73
229 230 1.741706 GACCGAGGATGACACGTCTAA 59.258 52.381 0.00 0.00 0.00 2.10
230 231 1.339342 TGACCGAGGATGACACGTCTA 60.339 52.381 0.00 0.00 0.00 2.59
231 232 0.608308 TGACCGAGGATGACACGTCT 60.608 55.000 0.00 0.00 0.00 4.18
232 233 0.242825 TTGACCGAGGATGACACGTC 59.757 55.000 0.00 0.00 0.00 4.34
233 234 0.895530 ATTGACCGAGGATGACACGT 59.104 50.000 0.00 0.00 0.00 4.49
234 235 2.863401 TATTGACCGAGGATGACACG 57.137 50.000 0.00 0.00 0.00 4.49
235 236 7.155328 AGATTTATATTGACCGAGGATGACAC 58.845 38.462 0.00 0.00 0.00 3.67
236 237 7.303182 AGATTTATATTGACCGAGGATGACA 57.697 36.000 0.00 0.00 0.00 3.58
237 238 7.872993 TGAAGATTTATATTGACCGAGGATGAC 59.127 37.037 0.00 0.00 0.00 3.06
238 239 7.962441 TGAAGATTTATATTGACCGAGGATGA 58.038 34.615 0.00 0.00 0.00 2.92
239 240 8.663025 CATGAAGATTTATATTGACCGAGGATG 58.337 37.037 0.00 0.00 0.00 3.51
240 241 7.335422 GCATGAAGATTTATATTGACCGAGGAT 59.665 37.037 0.00 0.00 0.00 3.24
241 242 6.650807 GCATGAAGATTTATATTGACCGAGGA 59.349 38.462 0.00 0.00 0.00 3.71
242 243 6.427853 TGCATGAAGATTTATATTGACCGAGG 59.572 38.462 0.00 0.00 0.00 4.63
243 244 7.425577 TGCATGAAGATTTATATTGACCGAG 57.574 36.000 0.00 0.00 0.00 4.63
244 245 7.800155 TTGCATGAAGATTTATATTGACCGA 57.200 32.000 0.00 0.00 0.00 4.69
245 246 9.121517 GATTTGCATGAAGATTTATATTGACCG 57.878 33.333 0.00 0.00 0.00 4.79
246 247 9.415544 GGATTTGCATGAAGATTTATATTGACC 57.584 33.333 0.00 0.00 0.00 4.02
253 254 9.595823 CTGAAAAGGATTTGCATGAAGATTTAT 57.404 29.630 0.00 0.00 44.09 1.40
254 255 8.587608 ACTGAAAAGGATTTGCATGAAGATTTA 58.412 29.630 0.00 0.00 44.09 1.40
255 256 7.447594 ACTGAAAAGGATTTGCATGAAGATTT 58.552 30.769 0.00 0.00 44.09 2.17
256 257 7.001099 ACTGAAAAGGATTTGCATGAAGATT 57.999 32.000 0.00 0.00 44.09 2.40
257 258 6.600882 ACTGAAAAGGATTTGCATGAAGAT 57.399 33.333 0.00 0.00 44.09 2.40
258 259 6.409524 AACTGAAAAGGATTTGCATGAAGA 57.590 33.333 0.00 0.00 44.09 2.87
259 260 6.146673 GGAAACTGAAAAGGATTTGCATGAAG 59.853 38.462 0.00 0.00 44.09 3.02
260 261 5.990996 GGAAACTGAAAAGGATTTGCATGAA 59.009 36.000 0.00 0.00 44.09 2.57
261 262 5.305128 AGGAAACTGAAAAGGATTTGCATGA 59.695 36.000 0.00 0.00 44.09 3.07
262 263 5.544650 AGGAAACTGAAAAGGATTTGCATG 58.455 37.500 0.00 0.00 44.09 4.06
263 264 5.813513 AGGAAACTGAAAAGGATTTGCAT 57.186 34.783 0.00 0.00 44.09 3.96
264 265 5.358922 CAAGGAAACTGAAAAGGATTTGCA 58.641 37.500 0.00 0.00 42.59 4.08
265 266 4.212004 GCAAGGAAACTGAAAAGGATTTGC 59.788 41.667 0.00 0.00 42.68 3.68
266 267 4.445385 CGCAAGGAAACTGAAAAGGATTTG 59.555 41.667 0.00 0.00 42.68 2.32
267 268 4.099419 ACGCAAGGAAACTGAAAAGGATTT 59.901 37.500 0.00 0.00 42.68 2.17
268 269 3.636764 ACGCAAGGAAACTGAAAAGGATT 59.363 39.130 0.00 0.00 42.68 3.01
269 270 3.222603 ACGCAAGGAAACTGAAAAGGAT 58.777 40.909 0.00 0.00 42.68 3.24
270 271 2.616842 GACGCAAGGAAACTGAAAAGGA 59.383 45.455 0.00 0.00 42.68 3.36
271 272 2.287608 GGACGCAAGGAAACTGAAAAGG 60.288 50.000 0.00 0.00 42.68 3.11
272 273 2.287608 GGGACGCAAGGAAACTGAAAAG 60.288 50.000 0.00 0.00 42.68 2.27
273 274 1.679153 GGGACGCAAGGAAACTGAAAA 59.321 47.619 0.00 0.00 42.68 2.29
274 275 1.314730 GGGACGCAAGGAAACTGAAA 58.685 50.000 0.00 0.00 42.68 2.69
275 276 0.181587 TGGGACGCAAGGAAACTGAA 59.818 50.000 0.00 0.00 42.68 3.02
276 277 0.181587 TTGGGACGCAAGGAAACTGA 59.818 50.000 0.00 0.00 42.68 3.41
277 278 0.310854 GTTGGGACGCAAGGAAACTG 59.689 55.000 5.00 0.00 42.68 3.16
279 280 0.310854 CAGTTGGGACGCAAGGAAAC 59.689 55.000 5.00 0.00 46.39 2.78
280 281 0.181587 TCAGTTGGGACGCAAGGAAA 59.818 50.000 5.00 0.00 46.39 3.13
281 282 0.400213 ATCAGTTGGGACGCAAGGAA 59.600 50.000 5.00 0.00 46.39 3.36
282 283 0.321564 CATCAGTTGGGACGCAAGGA 60.322 55.000 5.00 7.05 46.39 3.36
283 284 0.606401 ACATCAGTTGGGACGCAAGG 60.606 55.000 5.00 1.60 46.39 3.61
284 285 1.197721 GAACATCAGTTGGGACGCAAG 59.802 52.381 5.00 0.00 38.30 4.01
285 286 1.234821 GAACATCAGTTGGGACGCAA 58.765 50.000 0.00 0.00 38.30 4.85
286 287 0.948623 CGAACATCAGTTGGGACGCA 60.949 55.000 0.00 0.00 38.30 5.24
287 288 1.787847 CGAACATCAGTTGGGACGC 59.212 57.895 0.00 0.00 38.30 5.19
288 289 0.670546 AGCGAACATCAGTTGGGACG 60.671 55.000 0.00 0.00 38.30 4.79
289 290 0.798776 CAGCGAACATCAGTTGGGAC 59.201 55.000 0.00 0.00 38.30 4.46
290 291 0.321564 CCAGCGAACATCAGTTGGGA 60.322 55.000 0.00 0.00 38.30 4.37
291 292 0.606401 ACCAGCGAACATCAGTTGGG 60.606 55.000 3.59 0.00 42.07 4.12
292 293 1.238439 AACCAGCGAACATCAGTTGG 58.762 50.000 0.00 0.00 43.18 3.77
293 294 4.481930 TTTAACCAGCGAACATCAGTTG 57.518 40.909 0.00 0.00 38.30 3.16
294 295 4.023193 CCTTTTAACCAGCGAACATCAGTT 60.023 41.667 0.00 0.00 41.64 3.16
295 296 3.502211 CCTTTTAACCAGCGAACATCAGT 59.498 43.478 0.00 0.00 0.00 3.41
296 297 3.119849 CCCTTTTAACCAGCGAACATCAG 60.120 47.826 0.00 0.00 0.00 2.90
297 298 2.817258 CCCTTTTAACCAGCGAACATCA 59.183 45.455 0.00 0.00 0.00 3.07
298 299 2.817844 ACCCTTTTAACCAGCGAACATC 59.182 45.455 0.00 0.00 0.00 3.06
299 300 2.817844 GACCCTTTTAACCAGCGAACAT 59.182 45.455 0.00 0.00 0.00 2.71
300 301 2.223745 GACCCTTTTAACCAGCGAACA 58.776 47.619 0.00 0.00 0.00 3.18
301 302 1.538512 GGACCCTTTTAACCAGCGAAC 59.461 52.381 0.00 0.00 0.00 3.95
302 303 1.143277 TGGACCCTTTTAACCAGCGAA 59.857 47.619 0.00 0.00 0.00 4.70
303 304 0.766131 TGGACCCTTTTAACCAGCGA 59.234 50.000 0.00 0.00 0.00 4.93
304 305 1.611519 TTGGACCCTTTTAACCAGCG 58.388 50.000 0.00 0.00 33.85 5.18
305 306 3.056821 GTCATTGGACCCTTTTAACCAGC 60.057 47.826 0.00 0.00 38.12 4.85
306 307 4.783764 GTCATTGGACCCTTTTAACCAG 57.216 45.455 0.00 0.00 38.12 4.00
318 319 0.539438 TGGCCACTTGGTCATTGGAC 60.539 55.000 0.00 1.79 46.36 4.02
319 320 1.849832 TGGCCACTTGGTCATTGGA 59.150 52.632 0.00 0.00 46.36 3.53
320 321 4.517663 TGGCCACTTGGTCATTGG 57.482 55.556 0.00 0.00 46.36 3.16
325 326 3.359002 CAAGCTGGCCACTTGGTC 58.641 61.111 27.19 7.70 40.68 4.02
328 329 0.883833 CTTACCAAGCTGGCCACTTG 59.116 55.000 27.60 27.60 42.67 3.16
329 330 3.346426 CTTACCAAGCTGGCCACTT 57.654 52.632 0.00 8.14 42.67 3.16
357 358 9.261318 GCAAATCCGCTTTTTAATTGTAATTTC 57.739 29.630 0.00 0.00 0.00 2.17
358 359 8.998377 AGCAAATCCGCTTTTTAATTGTAATTT 58.002 25.926 0.00 0.00 39.99 1.82
359 360 8.546597 AGCAAATCCGCTTTTTAATTGTAATT 57.453 26.923 0.00 0.00 39.99 1.40
360 361 9.816354 ATAGCAAATCCGCTTTTTAATTGTAAT 57.184 25.926 0.00 0.00 43.56 1.89
361 362 9.646427 AATAGCAAATCCGCTTTTTAATTGTAA 57.354 25.926 0.00 0.00 43.56 2.41
362 363 9.646427 AAATAGCAAATCCGCTTTTTAATTGTA 57.354 25.926 0.00 0.00 40.10 2.41
363 364 8.546597 AAATAGCAAATCCGCTTTTTAATTGT 57.453 26.923 0.00 0.00 40.10 2.71
366 367 9.646427 TGTAAAATAGCAAATCCGCTTTTTAAT 57.354 25.926 0.00 0.00 40.71 1.40
367 368 9.134734 CTGTAAAATAGCAAATCCGCTTTTTAA 57.865 29.630 0.00 0.00 40.71 1.52
368 369 8.301002 ACTGTAAAATAGCAAATCCGCTTTTTA 58.699 29.630 0.00 0.00 40.71 1.52
369 370 7.151976 ACTGTAAAATAGCAAATCCGCTTTTT 58.848 30.769 0.00 0.00 42.54 1.94
370 371 6.687604 ACTGTAAAATAGCAAATCCGCTTTT 58.312 32.000 0.00 0.00 43.56 2.27
371 372 6.267496 ACTGTAAAATAGCAAATCCGCTTT 57.733 33.333 0.00 0.00 43.56 3.51
372 373 5.447279 CGACTGTAAAATAGCAAATCCGCTT 60.447 40.000 0.00 0.00 43.56 4.68
373 374 4.034048 CGACTGTAAAATAGCAAATCCGCT 59.966 41.667 0.00 0.00 46.26 5.52
374 375 4.033587 TCGACTGTAAAATAGCAAATCCGC 59.966 41.667 0.00 0.00 0.00 5.54
375 376 5.291128 ACTCGACTGTAAAATAGCAAATCCG 59.709 40.000 0.00 0.00 0.00 4.18
376 377 6.092259 ACACTCGACTGTAAAATAGCAAATCC 59.908 38.462 0.00 0.00 0.00 3.01
377 378 7.061752 ACACTCGACTGTAAAATAGCAAATC 57.938 36.000 0.00 0.00 0.00 2.17
378 379 7.435068 AACACTCGACTGTAAAATAGCAAAT 57.565 32.000 0.00 0.00 0.00 2.32
379 380 6.854496 AACACTCGACTGTAAAATAGCAAA 57.146 33.333 0.00 0.00 0.00 3.68
380 381 6.854496 AAACACTCGACTGTAAAATAGCAA 57.146 33.333 0.00 0.00 0.00 3.91
381 382 6.854496 AAAACACTCGACTGTAAAATAGCA 57.146 33.333 0.00 0.00 0.00 3.49
382 383 7.349711 TCAAAAACACTCGACTGTAAAATAGC 58.650 34.615 0.00 0.00 0.00 2.97
383 384 9.710979 TTTCAAAAACACTCGACTGTAAAATAG 57.289 29.630 0.00 0.00 0.00 1.73
385 386 8.973835 TTTTCAAAAACACTCGACTGTAAAAT 57.026 26.923 0.00 0.00 0.00 1.82
386 387 8.798748 TTTTTCAAAAACACTCGACTGTAAAA 57.201 26.923 0.00 0.00 0.00 1.52
439 440 6.754675 GTCTCCAAAGACCGATTTTTGAAAAA 59.245 34.615 5.47 5.47 45.26 1.94
440 441 6.270064 GTCTCCAAAGACCGATTTTTGAAAA 58.730 36.000 0.00 0.00 45.26 2.29
441 442 5.827666 GTCTCCAAAGACCGATTTTTGAAA 58.172 37.500 0.00 0.00 45.26 2.69
442 443 5.432885 GTCTCCAAAGACCGATTTTTGAA 57.567 39.130 0.00 0.00 45.26 2.69
475 476 1.374758 GAACCGACCTGAGCTGGTG 60.375 63.158 0.00 0.00 41.00 4.17
496 497 1.135803 CCATTGAACAAGGCGGTTACG 60.136 52.381 0.00 0.00 44.63 3.18
707 723 1.974343 CGAGAGATAGGGGGAGGCG 60.974 68.421 0.00 0.00 0.00 5.52
801 820 2.398803 GCCGAGATCAAAAGGCTCC 58.601 57.895 11.77 0.00 45.67 4.70
848 880 1.140161 TAACCCAGAATCGCCGTCG 59.860 57.895 0.00 0.00 0.00 5.12
877 909 1.867363 GTGGACAGGGTAGATCAGGT 58.133 55.000 0.00 0.00 0.00 4.00
901 933 2.380410 CGGCGACCTCGACCTTTTG 61.380 63.158 0.00 0.00 46.52 2.44
947 979 2.746277 GGGCAGCAACCTGTACCG 60.746 66.667 0.00 0.00 41.26 4.02
978 1037 1.756950 CGCAGTACTCCCCTAGCCA 60.757 63.158 0.00 0.00 0.00 4.75
993 1052 3.610821 CGATTAAGACCGACATATCCGCA 60.611 47.826 0.00 0.00 0.00 5.69
1025 1084 2.044555 TCGACAACGAGATCGCCCT 61.045 57.895 1.39 0.00 43.81 5.19
1038 1097 0.179137 GATCGGTGTGCAGATCGACA 60.179 55.000 22.49 0.00 36.79 4.35
1041 1100 0.179127 ACTGATCGGTGTGCAGATCG 60.179 55.000 10.79 10.79 45.26 3.69
1068 1127 3.883489 GCTTGAGAAAGTTGTAGGTGGTT 59.117 43.478 0.00 0.00 0.00 3.67
1083 1142 3.007723 ACTTCATCTTGCAGAGCTTGAGA 59.992 43.478 0.00 0.00 0.00 3.27
1140 1199 0.670546 CGGTCTGTGCCACGAAATCT 60.671 55.000 0.00 0.00 0.00 2.40
1197 1256 1.616865 TCACCGTGGAGGAACTTGTAG 59.383 52.381 0.00 0.00 41.55 2.74
1248 1307 0.322456 TTGAATGCCTCAGTTCCGGG 60.322 55.000 0.00 0.00 34.81 5.73
1381 1440 3.067833 GACCTTCACCTTCAGCAACTAC 58.932 50.000 0.00 0.00 0.00 2.73
1527 1593 1.402852 GGCGAATTTGGAGGAACAAGC 60.403 52.381 0.00 0.00 0.00 4.01
1545 1611 0.383231 CGATCAGCTTTCCAATGGGC 59.617 55.000 0.00 0.00 0.00 5.36
1559 1625 1.950216 CCTCTCCAATCTCGTCGATCA 59.050 52.381 0.00 0.00 0.00 2.92
1574 1640 1.616159 ATCCTCTAAGCGCTCCTCTC 58.384 55.000 12.06 0.00 0.00 3.20
1628 1694 1.500108 GATCATCTCCTCAAGCTGCG 58.500 55.000 0.00 0.00 0.00 5.18
1818 1896 1.342555 TGTAGTCGCGGATTGTTTCG 58.657 50.000 6.13 0.00 0.00 3.46
1830 1908 2.922758 GCTGTCACCAGTCTTGTAGTCG 60.923 54.545 0.00 0.00 41.02 4.18
1938 2016 8.924511 TCTGACTAAAATCAACTTGAATCCTT 57.075 30.769 0.00 0.00 0.00 3.36
1983 2061 1.069765 CGTGCCCTGTCTGAACTGT 59.930 57.895 0.00 0.00 0.00 3.55
2046 2124 0.390860 CCAGATCTCGGGCTTGGTAG 59.609 60.000 0.00 0.00 0.00 3.18
2051 2129 1.974236 CCTTATCCAGATCTCGGGCTT 59.026 52.381 10.23 0.00 0.00 4.35
2074 2152 4.944930 TCGGTCCTTGTTTTTCTTCTCAAA 59.055 37.500 0.00 0.00 0.00 2.69
2148 2226 9.605275 TCCTCATCAAAGACTAAATCATAACTG 57.395 33.333 0.00 0.00 0.00 3.16
2241 2319 1.603172 GGTACCTCTGATCGCCAATCG 60.603 57.143 4.06 0.00 37.17 3.34
2379 2472 1.168714 AGAGGGAAAGATTGTTGCGC 58.831 50.000 0.00 0.00 0.00 6.09
2390 2483 3.526360 ATAGGGAGGGAAAGAGGGAAA 57.474 47.619 0.00 0.00 0.00 3.13
2391 2484 4.871806 ATATAGGGAGGGAAAGAGGGAA 57.128 45.455 0.00 0.00 0.00 3.97
2392 2485 5.042523 GGATATATAGGGAGGGAAAGAGGGA 60.043 48.000 0.00 0.00 0.00 4.20
2393 2486 5.220521 GGATATATAGGGAGGGAAAGAGGG 58.779 50.000 0.00 0.00 0.00 4.30
2394 2487 5.042218 AGGGATATATAGGGAGGGAAAGAGG 60.042 48.000 0.00 0.00 0.00 3.69
2395 2488 6.111564 AGGGATATATAGGGAGGGAAAGAG 57.888 45.833 0.00 0.00 0.00 2.85
2396 2489 5.042523 GGAGGGATATATAGGGAGGGAAAGA 60.043 48.000 0.00 0.00 0.00 2.52
2397 2490 5.220521 GGAGGGATATATAGGGAGGGAAAG 58.779 50.000 0.00 0.00 0.00 2.62
2398 2491 4.014593 GGGAGGGATATATAGGGAGGGAAA 60.015 50.000 0.00 0.00 0.00 3.13
2399 2492 3.540687 GGGAGGGATATATAGGGAGGGAA 59.459 52.174 0.00 0.00 0.00 3.97
2400 2493 3.148331 GGGAGGGATATATAGGGAGGGA 58.852 54.545 0.00 0.00 0.00 4.20
2401 2494 3.151634 AGGGAGGGATATATAGGGAGGG 58.848 54.545 0.00 0.00 0.00 4.30
2402 2495 7.872008 ATATAGGGAGGGATATATAGGGAGG 57.128 44.000 0.00 0.00 0.00 4.30
2424 2517 9.433153 CGGACGACCAGAAGCTATATATATATA 57.567 37.037 11.21 11.21 35.59 0.86
2425 2518 7.937942 ACGGACGACCAGAAGCTATATATATAT 59.062 37.037 10.10 10.10 35.59 0.86
2426 2519 7.278135 ACGGACGACCAGAAGCTATATATATA 58.722 38.462 4.48 2.49 35.59 0.86
2427 2520 6.120905 ACGGACGACCAGAAGCTATATATAT 58.879 40.000 4.48 0.00 35.59 0.86
2428 2521 5.494724 ACGGACGACCAGAAGCTATATATA 58.505 41.667 4.48 0.00 35.59 0.86
2429 2522 4.333690 ACGGACGACCAGAAGCTATATAT 58.666 43.478 4.48 0.00 35.59 0.86
2430 2523 3.748083 ACGGACGACCAGAAGCTATATA 58.252 45.455 4.48 0.00 35.59 0.86
2431 2524 2.553172 GACGGACGACCAGAAGCTATAT 59.447 50.000 4.48 0.00 35.59 0.86
2432 2525 1.945394 GACGGACGACCAGAAGCTATA 59.055 52.381 4.48 0.00 35.59 1.31
2433 2526 0.739561 GACGGACGACCAGAAGCTAT 59.260 55.000 4.48 0.00 35.59 2.97
2434 2527 1.642037 CGACGGACGACCAGAAGCTA 61.642 60.000 4.48 0.00 45.77 3.32
2435 2528 2.963371 GACGGACGACCAGAAGCT 59.037 61.111 4.48 0.00 35.59 3.74
2458 2551 2.292803 GCTTTTTCGCAAAACGCCA 58.707 47.368 9.91 0.00 39.06 5.69
2490 2584 0.966179 GGGACTGCGGGTTGATTTTT 59.034 50.000 0.00 0.00 0.00 1.94
2491 2585 0.112412 AGGGACTGCGGGTTGATTTT 59.888 50.000 0.00 0.00 37.18 1.82
2536 2630 4.597075 AGGGGGTTTTCTGCAAAATGTAAT 59.403 37.500 0.00 0.00 33.98 1.89
2695 2829 3.774528 TCGCCTCCGCAGCATCTT 61.775 61.111 0.00 0.00 34.03 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.