Multiple sequence alignment - TraesCS4A01G064200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G064200 chr4A 100.000 4958 0 0 1 4958 60929955 60924998 0.000000e+00 9156.0
1 TraesCS4A01G064200 chr4A 77.419 248 54 2 3575 3821 180397865 180398111 4.000000e-31 147.0
2 TraesCS4A01G064200 chr4D 92.417 1899 81 23 722 2578 403399569 403397692 0.000000e+00 2651.0
3 TraesCS4A01G064200 chr4D 86.446 1387 71 54 2663 3974 403397581 403396237 0.000000e+00 1411.0
4 TraesCS4A01G064200 chr4D 82.582 643 48 26 99 725 403400248 403399654 4.430000e-140 508.0
5 TraesCS4A01G064200 chr4D 88.070 285 17 5 4534 4806 403371335 403371056 6.190000e-84 322.0
6 TraesCS4A01G064200 chr4D 89.344 244 7 6 4007 4250 403396234 403396010 6.280000e-74 289.0
7 TraesCS4A01G064200 chr4D 77.869 244 52 2 3584 3826 301299570 301299328 3.090000e-32 150.0
8 TraesCS4A01G064200 chr4D 97.674 43 1 0 4841 4883 403370987 403370945 1.910000e-09 75.0
9 TraesCS4A01G064200 chr4B 91.522 1899 79 38 722 2563 500257421 500255548 0.000000e+00 2540.0
10 TraesCS4A01G064200 chr4B 86.413 1104 59 34 2663 3696 500255421 500254339 0.000000e+00 1123.0
11 TraesCS4A01G064200 chr4B 84.835 1154 47 39 3692 4806 500253403 500252339 0.000000e+00 1044.0
12 TraesCS4A01G064200 chr4B 80.481 748 60 40 1 725 500258189 500257505 1.240000e-135 494.0
13 TraesCS4A01G064200 chr4B 86.066 122 5 4 4841 4955 500252256 500252140 2.420000e-23 121.0
14 TraesCS4A01G064200 chr5B 79.861 288 52 6 2117 2401 24115387 24115103 6.510000e-49 206.0
15 TraesCS4A01G064200 chr5A 79.655 290 49 9 2117 2401 21433394 21433110 3.030000e-47 200.0
16 TraesCS4A01G064200 chr3A 79.655 290 49 9 2117 2401 398884963 398884679 3.030000e-47 200.0
17 TraesCS4A01G064200 chr3A 80.455 220 36 6 3572 3786 589395278 589395495 1.430000e-35 161.0
18 TraesCS4A01G064200 chr3A 84.545 110 17 0 3677 3786 131406672 131406781 5.250000e-20 110.0
19 TraesCS4A01G064200 chr3B 79.310 290 50 9 2117 2401 395384251 395383967 1.410000e-45 195.0
20 TraesCS4A01G064200 chr3B 78.829 222 36 9 3572 3786 587568059 587568276 6.690000e-29 139.0
21 TraesCS4A01G064200 chr3B 89.286 56 6 0 3573 3628 76433068 76433013 2.480000e-08 71.3
22 TraesCS4A01G064200 chr3D 79.094 287 50 9 2117 2398 323693510 323693791 6.550000e-44 189.0
23 TraesCS4A01G064200 chr3D 80.000 220 37 6 3572 3786 447991875 447992092 6.650000e-34 156.0
24 TraesCS4A01G064200 chr5D 78.425 292 55 8 2117 2404 33025526 33025239 3.050000e-42 183.0
25 TraesCS4A01G064200 chr1B 76.577 222 45 6 3570 3786 535384580 535384361 1.130000e-21 115.0
26 TraesCS4A01G064200 chr7B 88.710 62 5 2 3568 3628 57633400 57633340 1.910000e-09 75.0
27 TraesCS4A01G064200 chr7B 97.059 34 1 0 2203 2236 577205266 577205233 1.930000e-04 58.4
28 TraesCS4A01G064200 chr6D 95.556 45 2 0 3581 3625 470961823 470961779 6.880000e-09 73.1
29 TraesCS4A01G064200 chr7A 84.746 59 9 0 3570 3628 5600389 5600447 5.360000e-05 60.2
30 TraesCS4A01G064200 chr7A 97.059 34 1 0 2203 2236 618241810 618241843 1.930000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G064200 chr4A 60924998 60929955 4957 True 9156.00 9156 100.00000 1 4958 1 chr4A.!!$R1 4957
1 TraesCS4A01G064200 chr4D 403396010 403400248 4238 True 1214.75 2651 87.69725 99 4250 4 chr4D.!!$R3 4151
2 TraesCS4A01G064200 chr4B 500252140 500258189 6049 True 1064.40 2540 85.86340 1 4955 5 chr4B.!!$R1 4954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.037232 GAGTCCTTGACCGGAACCAG 60.037 60.0 9.46 2.85 34.20 4.00 F
703 734 0.040067 CAGCCAGCCTTTCGTTTCAC 60.040 55.0 0.00 0.00 0.00 3.18 F
1791 1934 0.040499 AGAAGAAGAGGCTCTCCGGT 59.960 55.0 19.03 0.91 37.47 5.28 F
2645 2891 0.040942 ATTGCCATGCCCAAGGTGTA 59.959 50.0 3.87 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 1613 0.250295 TGAGCTTGTTGAAGTCGGGG 60.250 55.0 0.00 0.00 0.00 5.73 R
2611 2857 0.102300 GCAATGGCGGGGACATAAAC 59.898 55.0 0.00 0.00 27.35 2.01 R
2842 3112 0.107654 ATGGACCACGAGCTTAAGCC 60.108 55.0 23.71 13.93 43.38 4.35 R
4584 5925 0.250166 GACCTACCACACCACACCAC 60.250 60.0 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.947013 CCACGCCATCATCATCTGC 59.053 57.895 0.00 0.00 0.00 4.26
32 33 3.497932 CTGCTTGCCAGAGCTCGC 61.498 66.667 8.37 7.40 44.64 5.03
51 52 2.436824 GCTCTTGTTCTCCCGGGC 60.437 66.667 18.49 1.20 0.00 6.13
53 54 3.665675 CTCTTGTTCTCCCGGGCGG 62.666 68.421 18.49 11.61 0.00 6.13
67 68 4.802051 GCGGGAGGGCATCAGCAA 62.802 66.667 12.66 0.00 44.61 3.91
68 69 2.515523 CGGGAGGGCATCAGCAAG 60.516 66.667 0.08 0.00 44.61 4.01
69 70 2.679716 GGGAGGGCATCAGCAAGT 59.320 61.111 0.08 0.00 44.61 3.16
77 78 1.588082 CATCAGCAAGTTGGCCACC 59.412 57.895 3.88 0.00 0.00 4.61
84 85 1.337167 GCAAGTTGGCCACCATTCTTC 60.337 52.381 3.88 0.00 31.53 2.87
90 91 1.280133 TGGCCACCATTCTTCTCTCTG 59.720 52.381 0.00 0.00 0.00 3.35
93 94 2.419851 GCCACCATTCTTCTCTCTGGAG 60.420 54.545 0.00 0.00 40.73 3.86
94 95 2.836981 CCACCATTCTTCTCTCTGGAGT 59.163 50.000 0.00 0.00 40.29 3.85
97 98 3.704061 ACCATTCTTCTCTCTGGAGTAGC 59.296 47.826 0.00 0.00 40.29 3.58
123 124 1.298638 TCTCGAGCGTGATGATGCG 60.299 57.895 7.81 0.00 39.30 4.73
128 129 3.993234 GCGTGATGATGCGGCTCG 61.993 66.667 0.00 0.00 0.00 5.03
154 155 0.037232 GAGTCCTTGACCGGAACCAG 60.037 60.000 9.46 2.85 34.20 4.00
163 164 2.335712 CCGGAACCAGAAAGCCTGC 61.336 63.158 0.00 0.00 41.57 4.85
189 190 2.202932 CGATCCTGAACCTGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
202 203 0.821517 CTGCCCGGTTAAATTTCCCC 59.178 55.000 0.00 0.00 0.00 4.81
206 207 2.303600 GCCCGGTTAAATTTCCCCTTTT 59.696 45.455 0.00 0.00 0.00 2.27
207 208 3.866832 GCCCGGTTAAATTTCCCCTTTTG 60.867 47.826 0.00 0.00 0.00 2.44
208 209 3.579151 CCCGGTTAAATTTCCCCTTTTGA 59.421 43.478 0.00 0.00 0.00 2.69
209 210 4.561938 CCCGGTTAAATTTCCCCTTTTGAC 60.562 45.833 0.00 0.00 0.00 3.18
210 211 4.039366 CCGGTTAAATTTCCCCTTTTGACA 59.961 41.667 0.00 0.00 0.00 3.58
211 212 5.279758 CCGGTTAAATTTCCCCTTTTGACAT 60.280 40.000 0.00 0.00 0.00 3.06
212 213 6.227522 CGGTTAAATTTCCCCTTTTGACATT 58.772 36.000 0.00 0.00 0.00 2.71
213 214 7.379750 CGGTTAAATTTCCCCTTTTGACATTA 58.620 34.615 0.00 0.00 0.00 1.90
214 215 8.038351 CGGTTAAATTTCCCCTTTTGACATTAT 58.962 33.333 0.00 0.00 0.00 1.28
215 216 9.733556 GGTTAAATTTCCCCTTTTGACATTATT 57.266 29.630 0.00 0.00 0.00 1.40
231 232 2.519377 TATTATCGTGAACCTGCCGG 57.481 50.000 0.00 0.00 0.00 6.13
248 249 0.110373 CGGGTTTTACTGCTGCGTTC 60.110 55.000 0.00 0.00 0.00 3.95
259 260 3.939939 TGCGTTCTCAGGCAGGCA 61.940 61.111 0.00 0.00 38.89 4.75
302 303 5.020758 CGTGTTGCCAAAAATTCAAGTTTG 58.979 37.500 0.00 0.00 35.03 2.93
312 313 7.201513 CCAAAAATTCAAGTTTGTGTACACCAG 60.202 37.037 22.91 6.79 33.71 4.00
315 316 2.942376 TCAAGTTTGTGTACACCAGCAG 59.058 45.455 22.91 10.91 0.00 4.24
382 383 1.670811 CCGTGAACTGGATAACATGCC 59.329 52.381 0.00 0.00 0.00 4.40
396 397 0.464373 CATGCCATGCTCGGGTACTT 60.464 55.000 0.00 0.00 0.00 2.24
438 446 4.207281 CCTAGCAGCGCGGCAGTA 62.207 66.667 33.13 17.23 35.83 2.74
439 447 2.956964 CTAGCAGCGCGGCAGTAC 60.957 66.667 33.13 4.55 35.83 2.73
440 448 4.508128 TAGCAGCGCGGCAGTACC 62.508 66.667 33.13 3.76 35.83 3.34
443 451 4.742201 CAGCGCGGCAGTACCACT 62.742 66.667 8.83 0.00 39.03 4.00
444 452 4.436998 AGCGCGGCAGTACCACTC 62.437 66.667 8.83 0.00 39.03 3.51
445 453 4.735132 GCGCGGCAGTACCACTCA 62.735 66.667 8.83 0.00 39.03 3.41
446 454 2.809601 CGCGGCAGTACCACTCAC 60.810 66.667 0.00 0.00 39.03 3.51
447 455 2.809601 GCGGCAGTACCACTCACG 60.810 66.667 0.00 0.00 39.03 4.35
465 473 0.234884 CGAACCTTTTGCTCGTGGTC 59.765 55.000 0.00 0.00 31.64 4.02
476 484 2.742372 CGTGGTCGGAAGCTTGGG 60.742 66.667 2.10 0.00 0.00 4.12
493 501 1.203001 TGGGATTCACTCAACCCCAAC 60.203 52.381 0.00 0.00 43.53 3.77
496 504 2.162681 GATTCACTCAACCCCAACCAG 58.837 52.381 0.00 0.00 0.00 4.00
497 505 0.467290 TTCACTCAACCCCAACCAGC 60.467 55.000 0.00 0.00 0.00 4.85
498 506 1.152777 CACTCAACCCCAACCAGCA 60.153 57.895 0.00 0.00 0.00 4.41
499 507 1.151450 ACTCAACCCCAACCAGCAG 59.849 57.895 0.00 0.00 0.00 4.24
500 508 2.203480 TCAACCCCAACCAGCAGC 60.203 61.111 0.00 0.00 0.00 5.25
501 509 2.521465 CAACCCCAACCAGCAGCA 60.521 61.111 0.00 0.00 0.00 4.41
502 510 1.909781 CAACCCCAACCAGCAGCAT 60.910 57.895 0.00 0.00 0.00 3.79
506 522 2.703798 CCCAACCAGCAGCATTCCG 61.704 63.158 0.00 0.00 0.00 4.30
546 563 0.748367 GGCAGGAATTTCCTCCCGAC 60.748 60.000 15.24 3.18 45.66 4.79
567 584 1.379527 GAATTCCGGGTGAAAGCGAT 58.620 50.000 0.00 0.00 36.33 4.58
568 585 1.743394 GAATTCCGGGTGAAAGCGATT 59.257 47.619 0.00 0.00 36.33 3.34
569 586 1.834188 ATTCCGGGTGAAAGCGATTT 58.166 45.000 0.00 0.00 36.33 2.17
571 588 0.675522 TCCGGGTGAAAGCGATTTCC 60.676 55.000 22.28 13.57 33.03 3.13
572 589 0.676782 CCGGGTGAAAGCGATTTCCT 60.677 55.000 22.28 0.00 33.03 3.36
573 590 1.406341 CCGGGTGAAAGCGATTTCCTA 60.406 52.381 22.28 2.82 33.03 2.94
574 591 2.352388 CGGGTGAAAGCGATTTCCTAA 58.648 47.619 22.28 2.07 33.03 2.69
593 624 9.902196 TTTCCTAAACGATTTCCTAAACAATTC 57.098 29.630 0.00 0.00 0.00 2.17
594 625 8.624367 TCCTAAACGATTTCCTAAACAATTCA 57.376 30.769 0.00 0.00 0.00 2.57
595 626 9.238368 TCCTAAACGATTTCCTAAACAATTCAT 57.762 29.630 0.00 0.00 0.00 2.57
628 659 9.596308 TGGAAATATATTACTACTAGCACTGGA 57.404 33.333 0.00 0.00 0.00 3.86
633 664 2.223803 ACTACTAGCACTGGAGCAGT 57.776 50.000 0.00 0.00 46.51 4.40
666 697 4.038080 GTGTCTTTTGGCCCGGCG 62.038 66.667 0.00 0.00 0.00 6.46
697 728 3.121030 CGTCCAGCCAGCCTTTCG 61.121 66.667 0.00 0.00 0.00 3.46
703 734 0.040067 CAGCCAGCCTTTCGTTTCAC 60.040 55.000 0.00 0.00 0.00 3.18
705 736 1.172812 GCCAGCCTTTCGTTTCACCT 61.173 55.000 0.00 0.00 0.00 4.00
722 753 0.674895 CCTGGCCTCAAAAGACTCCG 60.675 60.000 3.32 0.00 0.00 4.63
725 756 1.302511 GCCTCAAAAGACTCCGCCA 60.303 57.895 0.00 0.00 0.00 5.69
726 757 1.578206 GCCTCAAAAGACTCCGCCAC 61.578 60.000 0.00 0.00 0.00 5.01
728 759 1.291877 CTCAAAAGACTCCGCCACCG 61.292 60.000 0.00 0.00 0.00 4.94
742 856 1.687563 CCACCGGGGTTAATCAATCC 58.312 55.000 6.32 0.00 33.72 3.01
745 859 2.622942 CACCGGGGTTAATCAATCCATG 59.377 50.000 6.32 0.00 36.55 3.66
762 876 5.509716 TCCATGATTAAAGCAGCAATCAG 57.490 39.130 11.21 5.25 42.67 2.90
769 884 1.041447 AAGCAGCAATCAGGCCCATC 61.041 55.000 0.00 0.00 0.00 3.51
846 961 1.228510 CAAGATTCCCCTGCCCCTC 59.771 63.158 0.00 0.00 0.00 4.30
891 1006 5.447778 TTCTACTACTGCCAGTACTACCT 57.552 43.478 0.00 0.00 0.00 3.08
997 1117 4.098235 CCCCCTTCCCCCGGTCTA 62.098 72.222 0.00 0.00 0.00 2.59
1434 1574 2.743928 CTCAGGAACCTGGTGCGC 60.744 66.667 18.99 0.00 43.75 6.09
1446 1586 4.166011 GTGCGCCTCAACATCGGC 62.166 66.667 4.18 0.00 42.86 5.54
1454 1594 1.081892 CTCAACATCGGCCAGAACAG 58.918 55.000 2.24 0.00 0.00 3.16
1473 1613 1.360911 GTTCTCCGGCGAGATCTCC 59.639 63.158 17.13 9.58 44.68 3.71
1520 1660 1.587613 GCTCGCTCATCCTCGACAC 60.588 63.158 0.00 0.00 0.00 3.67
1634 1774 3.207669 GCTCCGCAAGATGCCCAG 61.208 66.667 0.00 0.00 41.12 4.45
1781 1924 1.082690 GGCGGCAAGAAGAAGAAGAG 58.917 55.000 3.07 0.00 0.00 2.85
1791 1934 0.040499 AGAAGAAGAGGCTCTCCGGT 59.960 55.000 19.03 0.91 37.47 5.28
1881 2024 0.243907 TCTGCCGGAAGAAGAAGTCG 59.756 55.000 10.70 0.00 0.00 4.18
2064 2219 2.829458 GGAGGAGGAGGGTCGACG 60.829 72.222 9.92 0.00 0.00 5.12
2400 2555 2.901042 GCCCTCCTCCACGGTAAG 59.099 66.667 0.00 0.00 0.00 2.34
2407 2563 3.939592 CCTCCTCCACGGTAAGAAAAATC 59.060 47.826 0.00 0.00 0.00 2.17
2412 2568 6.321690 TCCTCCACGGTAAGAAAAATCAAAAA 59.678 34.615 0.00 0.00 0.00 1.94
2416 2572 8.035984 TCCACGGTAAGAAAAATCAAAAACTTT 58.964 29.630 0.00 0.00 0.00 2.66
2574 2770 3.366577 CCATTCCGTTTCCCTTTTAACCG 60.367 47.826 0.00 0.00 0.00 4.44
2578 2774 1.948834 CGTTTCCCTTTTAACCGGTGT 59.051 47.619 8.52 0.36 0.00 4.16
2611 2857 3.068064 GGTCCATGGCCCGGTTTG 61.068 66.667 6.96 0.00 0.00 2.93
2618 2864 1.548269 CATGGCCCGGTTTGTTTATGT 59.452 47.619 0.00 0.00 0.00 2.29
2622 2868 1.179152 CCCGGTTTGTTTATGTCCCC 58.821 55.000 0.00 0.00 0.00 4.81
2633 2879 2.005606 TATGTCCCCGCCATTGCCAT 62.006 55.000 0.00 0.00 0.00 4.40
2639 2885 3.772281 CGCCATTGCCATGCCCAA 61.772 61.111 0.00 0.38 0.00 4.12
2640 2886 2.188469 GCCATTGCCATGCCCAAG 59.812 61.111 0.00 0.00 0.00 3.61
2641 2887 2.904905 CCATTGCCATGCCCAAGG 59.095 61.111 0.00 3.45 0.00 3.61
2642 2888 1.991167 CCATTGCCATGCCCAAGGT 60.991 57.895 7.77 0.00 0.00 3.50
2643 2889 1.219664 CATTGCCATGCCCAAGGTG 59.780 57.895 3.87 0.00 0.00 4.00
2644 2890 1.229272 ATTGCCATGCCCAAGGTGT 60.229 52.632 3.87 0.00 0.00 4.16
2645 2891 0.040942 ATTGCCATGCCCAAGGTGTA 59.959 50.000 3.87 0.00 0.00 2.90
2646 2892 0.897863 TTGCCATGCCCAAGGTGTAC 60.898 55.000 0.00 0.00 0.00 2.90
2647 2893 1.304052 GCCATGCCCAAGGTGTACA 60.304 57.895 0.00 0.00 0.00 2.90
2648 2894 0.684153 GCCATGCCCAAGGTGTACAT 60.684 55.000 0.00 0.00 0.00 2.29
2649 2895 1.851304 CCATGCCCAAGGTGTACATT 58.149 50.000 0.00 0.00 0.00 2.71
2650 2896 2.178580 CCATGCCCAAGGTGTACATTT 58.821 47.619 0.00 0.00 0.00 2.32
2651 2897 2.166254 CCATGCCCAAGGTGTACATTTC 59.834 50.000 0.00 0.00 0.00 2.17
2652 2898 2.666272 TGCCCAAGGTGTACATTTCA 57.334 45.000 0.00 0.00 0.00 2.69
2653 2899 3.168035 TGCCCAAGGTGTACATTTCAT 57.832 42.857 0.00 0.00 0.00 2.57
2654 2900 2.824936 TGCCCAAGGTGTACATTTCATG 59.175 45.455 0.00 0.00 0.00 3.07
2655 2901 2.166254 GCCCAAGGTGTACATTTCATGG 59.834 50.000 0.00 5.11 33.60 3.66
2656 2902 3.696045 CCCAAGGTGTACATTTCATGGA 58.304 45.455 15.10 0.00 33.60 3.41
2657 2903 3.443681 CCCAAGGTGTACATTTCATGGAC 59.556 47.826 15.10 0.00 44.58 4.02
2675 2921 1.326548 GACGTCCACATTTCATACGCC 59.673 52.381 3.51 0.00 37.07 5.68
2766 3019 4.680237 CAGCCGAGTTGCGTGGGA 62.680 66.667 0.00 0.00 38.67 4.37
2793 3054 1.429148 CGCTAGTTTAAGGCGGCCAG 61.429 60.000 23.09 8.88 44.32 4.85
2842 3112 1.526575 ATTTGCGACCCACTTGCCTG 61.527 55.000 0.00 0.00 0.00 4.85
2870 3140 2.659063 CGTGGTCCATGGAGGCTCA 61.659 63.158 16.81 8.74 37.29 4.26
2872 3142 2.300967 TGGTCCATGGAGGCTCACC 61.301 63.158 16.81 13.02 37.29 4.02
2873 3143 2.592308 GTCCATGGAGGCTCACCC 59.408 66.667 16.81 0.00 37.29 4.61
2874 3144 2.692368 TCCATGGAGGCTCACCCC 60.692 66.667 17.69 0.00 37.29 4.95
2875 3145 3.813724 CCATGGAGGCTCACCCCC 61.814 72.222 17.69 0.00 36.11 5.40
2891 3161 4.140900 TCACCCCCTTTTGAAATCCAGTAA 60.141 41.667 0.00 0.00 0.00 2.24
2892 3162 4.021456 CACCCCCTTTTGAAATCCAGTAAC 60.021 45.833 0.00 0.00 0.00 2.50
2902 3189 4.020573 TGAAATCCAGTAACACTGTCCGAT 60.021 41.667 5.65 0.00 44.50 4.18
2903 3190 5.186215 TGAAATCCAGTAACACTGTCCGATA 59.814 40.000 5.65 0.00 44.50 2.92
2904 3191 4.650754 ATCCAGTAACACTGTCCGATAC 57.349 45.455 5.65 0.00 44.50 2.24
2947 3239 6.932356 ACATGGAGTTATTAGTTGCAGATG 57.068 37.500 0.00 0.00 0.00 2.90
2948 3240 6.653020 ACATGGAGTTATTAGTTGCAGATGA 58.347 36.000 0.00 0.00 0.00 2.92
2949 3241 6.765036 ACATGGAGTTATTAGTTGCAGATGAG 59.235 38.462 0.00 0.00 0.00 2.90
2951 3243 6.108687 TGGAGTTATTAGTTGCAGATGAGTG 58.891 40.000 0.00 0.00 0.00 3.51
3008 3333 2.362889 GGGCAGGGTGGTTGATGG 60.363 66.667 0.00 0.00 0.00 3.51
3114 3439 2.758840 GTACGTACGCACACACGC 59.241 61.111 16.72 0.00 41.80 5.34
3126 3453 2.405025 GCACACACGCAGATTTAAAAGC 59.595 45.455 0.00 0.00 0.00 3.51
3211 3549 0.239082 CGTAAAACCAACGGAAGCCC 59.761 55.000 0.00 0.00 36.71 5.19
3212 3550 1.320507 GTAAAACCAACGGAAGCCCA 58.679 50.000 0.00 0.00 0.00 5.36
3213 3551 1.682323 GTAAAACCAACGGAAGCCCAA 59.318 47.619 0.00 0.00 0.00 4.12
3214 3552 1.196012 AAAACCAACGGAAGCCCAAA 58.804 45.000 0.00 0.00 0.00 3.28
3215 3553 1.196012 AAACCAACGGAAGCCCAAAA 58.804 45.000 0.00 0.00 0.00 2.44
3216 3554 0.750249 AACCAACGGAAGCCCAAAAG 59.250 50.000 0.00 0.00 0.00 2.27
3246 3584 0.743701 AACAACCGTGTTGCACCGTA 60.744 50.000 14.29 0.00 46.40 4.02
3247 3585 0.743701 ACAACCGTGTTGCACCGTAA 60.744 50.000 14.29 0.00 32.58 3.18
3248 3586 0.316360 CAACCGTGTTGCACCGTAAC 60.316 55.000 4.23 0.00 0.00 2.50
3249 3587 0.462403 AACCGTGTTGCACCGTAACT 60.462 50.000 0.00 0.00 0.00 2.24
3250 3588 0.388659 ACCGTGTTGCACCGTAACTA 59.611 50.000 0.00 0.00 0.00 2.24
3286 3655 9.935682 GTGTGTTAATAATCTTCATGTATGTGG 57.064 33.333 0.00 0.00 0.00 4.17
3287 3656 9.679661 TGTGTTAATAATCTTCATGTATGTGGT 57.320 29.630 0.00 0.00 0.00 4.16
3288 3657 9.935682 GTGTTAATAATCTTCATGTATGTGGTG 57.064 33.333 0.00 0.00 0.00 4.17
3402 3771 2.268920 CACATCCACTCCACGGGG 59.731 66.667 0.00 0.00 0.00 5.73
3515 3884 3.470888 CGGCCCGTCATTCTCCCT 61.471 66.667 0.00 0.00 0.00 4.20
3522 3891 1.153349 GTCATTCTCCCTGACCCGC 60.153 63.158 0.00 0.00 37.61 6.13
3525 3894 2.722201 ATTCTCCCTGACCCGCGTC 61.722 63.158 4.92 0.00 39.66 5.19
3621 3990 2.663796 CTGCTGGAGCTGCTCACT 59.336 61.111 28.95 0.00 42.66 3.41
3746 5055 1.398692 GAGCTCCTCAGGTACCAGAG 58.601 60.000 23.87 23.87 0.00 3.35
3877 5186 4.851214 GCTCCGCCTCCTCCTCCT 62.851 72.222 0.00 0.00 0.00 3.69
3878 5187 2.520741 CTCCGCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
3879 5188 4.144727 TCCGCCTCCTCCTCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
3984 5299 0.868406 GCATTGATCGATCCCCGTTC 59.132 55.000 22.31 3.69 39.75 3.95
3985 5300 1.139989 CATTGATCGATCCCCGTTCG 58.860 55.000 22.31 0.86 39.24 3.95
3986 5301 0.750850 ATTGATCGATCCCCGTTCGT 59.249 50.000 22.31 0.00 39.24 3.85
3987 5302 0.101759 TTGATCGATCCCCGTTCGTC 59.898 55.000 22.31 0.00 39.24 4.20
3988 5303 1.007618 GATCGATCCCCGTTCGTCC 60.008 63.158 14.76 0.00 39.75 4.79
3989 5304 1.453762 GATCGATCCCCGTTCGTCCT 61.454 60.000 14.76 0.00 39.75 3.85
3990 5305 1.453762 ATCGATCCCCGTTCGTCCTC 61.454 60.000 0.00 0.00 39.75 3.71
3991 5306 2.813200 GATCCCCGTTCGTCCTCC 59.187 66.667 0.00 0.00 0.00 4.30
3992 5307 2.038329 ATCCCCGTTCGTCCTCCA 59.962 61.111 0.00 0.00 0.00 3.86
3993 5308 2.294132 GATCCCCGTTCGTCCTCCAC 62.294 65.000 0.00 0.00 0.00 4.02
3994 5309 4.078516 CCCCGTTCGTCCTCCACC 62.079 72.222 0.00 0.00 0.00 4.61
3995 5310 4.430765 CCCGTTCGTCCTCCACCG 62.431 72.222 0.00 0.00 0.00 4.94
4052 5367 3.374988 TGCTTAGTTCTTTGCATGGATCG 59.625 43.478 0.00 0.00 0.00 3.69
4053 5368 3.790123 GCTTAGTTCTTTGCATGGATCGC 60.790 47.826 0.00 0.00 0.00 4.58
4058 5373 0.302890 CTTTGCATGGATCGCGTCTC 59.697 55.000 5.77 4.29 0.00 3.36
4116 5431 7.502120 TTGTTTCTTTCATCTTCTTCTCCTG 57.498 36.000 0.00 0.00 0.00 3.86
4119 5434 7.227512 TGTTTCTTTCATCTTCTTCTCCTGTTC 59.772 37.037 0.00 0.00 0.00 3.18
4127 5442 2.245438 CTTCTCCTGTTCGGCCCCTC 62.245 65.000 0.00 0.00 0.00 4.30
4132 5447 0.539669 CCTGTTCGGCCCCTCTTTTT 60.540 55.000 0.00 0.00 0.00 1.94
4133 5448 0.881796 CTGTTCGGCCCCTCTTTTTC 59.118 55.000 0.00 0.00 0.00 2.29
4134 5449 0.476771 TGTTCGGCCCCTCTTTTTCT 59.523 50.000 0.00 0.00 0.00 2.52
4135 5450 1.133606 TGTTCGGCCCCTCTTTTTCTT 60.134 47.619 0.00 0.00 0.00 2.52
4136 5451 1.540267 GTTCGGCCCCTCTTTTTCTTC 59.460 52.381 0.00 0.00 0.00 2.87
4137 5452 1.064825 TCGGCCCCTCTTTTTCTTCT 58.935 50.000 0.00 0.00 0.00 2.85
4138 5453 1.423921 TCGGCCCCTCTTTTTCTTCTT 59.576 47.619 0.00 0.00 0.00 2.52
4139 5454 1.813178 CGGCCCCTCTTTTTCTTCTTC 59.187 52.381 0.00 0.00 0.00 2.87
4140 5455 2.553247 CGGCCCCTCTTTTTCTTCTTCT 60.553 50.000 0.00 0.00 0.00 2.85
4141 5456 3.501349 GGCCCCTCTTTTTCTTCTTCTT 58.499 45.455 0.00 0.00 0.00 2.52
4147 5462 7.429633 CCCCTCTTTTTCTTCTTCTTCTTTTC 58.570 38.462 0.00 0.00 0.00 2.29
4184 5499 5.979517 TGATTCTGTTCTATAGCACATGTCG 59.020 40.000 5.66 0.00 0.00 4.35
4188 5503 3.043586 GTTCTATAGCACATGTCGGTCG 58.956 50.000 0.00 0.00 0.00 4.79
4189 5504 1.607148 TCTATAGCACATGTCGGTCGG 59.393 52.381 0.00 0.00 0.00 4.79
4190 5505 1.607148 CTATAGCACATGTCGGTCGGA 59.393 52.381 0.00 0.00 0.00 4.55
4191 5506 0.821517 ATAGCACATGTCGGTCGGAA 59.178 50.000 0.00 0.00 0.00 4.30
4192 5507 0.108992 TAGCACATGTCGGTCGGAAC 60.109 55.000 0.00 0.00 0.00 3.62
4233 5548 6.206634 TGATTCTTGGAAAGTAACACATGGAC 59.793 38.462 0.00 0.00 46.34 4.02
4239 5554 2.024176 AGTAACACATGGACGATGCC 57.976 50.000 0.00 0.00 35.15 4.40
4240 5555 1.555075 AGTAACACATGGACGATGCCT 59.445 47.619 0.00 0.00 35.15 4.75
4241 5556 1.665679 GTAACACATGGACGATGCCTG 59.334 52.381 0.00 0.00 35.15 4.85
4242 5557 0.036732 AACACATGGACGATGCCTGT 59.963 50.000 0.00 0.00 35.15 4.00
4243 5558 0.901827 ACACATGGACGATGCCTGTA 59.098 50.000 0.00 0.00 35.15 2.74
4251 5566 2.947652 GGACGATGCCTGTACTGTACTA 59.052 50.000 17.98 5.03 0.00 1.82
4265 5580 6.986817 TGTACTGTACTATACCTAAGGACGAC 59.013 42.308 17.98 0.00 29.68 4.34
4266 5581 5.053145 ACTGTACTATACCTAAGGACGACG 58.947 45.833 0.00 0.00 29.68 5.12
4267 5582 5.163405 ACTGTACTATACCTAAGGACGACGA 60.163 44.000 0.00 0.00 29.68 4.20
4268 5583 5.858381 TGTACTATACCTAAGGACGACGAT 58.142 41.667 0.00 0.00 29.68 3.73
4269 5584 5.928839 TGTACTATACCTAAGGACGACGATC 59.071 44.000 0.00 0.00 29.68 3.69
4271 5586 1.972872 TACCTAAGGACGACGATCCC 58.027 55.000 0.00 0.00 39.91 3.85
4272 5587 0.033796 ACCTAAGGACGACGATCCCA 60.034 55.000 0.00 0.00 39.91 4.37
4273 5588 0.384669 CCTAAGGACGACGATCCCAC 59.615 60.000 0.00 0.00 39.91 4.61
4274 5589 0.029035 CTAAGGACGACGATCCCACG 59.971 60.000 0.00 0.00 39.91 4.94
4275 5590 1.378882 TAAGGACGACGATCCCACGG 61.379 60.000 0.00 0.00 39.91 4.94
4276 5591 3.136123 GGACGACGATCCCACGGA 61.136 66.667 0.00 0.00 37.61 4.69
4277 5592 2.487532 GGACGACGATCCCACGGAT 61.488 63.158 0.00 0.00 46.28 4.18
4278 5593 1.299165 GACGACGATCCCACGGATG 60.299 63.158 0.00 0.00 43.27 3.51
4279 5594 2.001361 GACGACGATCCCACGGATGT 62.001 60.000 0.00 0.00 43.27 3.06
4280 5595 1.299165 CGACGATCCCACGGATGTC 60.299 63.158 0.00 5.74 43.27 3.06
4307 5622 1.066257 GTTGCCACCAGCTGTTGTG 59.934 57.895 13.81 14.05 44.23 3.33
4318 5633 2.227149 CAGCTGTTGTGATGCTTGCTTA 59.773 45.455 5.25 0.00 34.51 3.09
4330 5653 4.577834 TGCTTGCTTACTTAAAACACCC 57.422 40.909 0.00 0.00 0.00 4.61
4331 5654 3.003897 TGCTTGCTTACTTAAAACACCCG 59.996 43.478 0.00 0.00 0.00 5.28
4381 5704 2.429069 CCGACGCTTTGCTTTGCC 60.429 61.111 0.00 0.00 0.00 4.52
4392 5733 2.437359 CTTTGCCTGCCTCCCTCG 60.437 66.667 0.00 0.00 0.00 4.63
4438 5779 3.925688 CGATCTCGGTTGTTAATGGTG 57.074 47.619 0.00 0.00 35.37 4.17
4459 5800 3.302129 GGGCTGCCCATTTTCCTG 58.698 61.111 32.46 0.00 44.65 3.86
4482 5823 0.323725 TGATGAGCCTCCTTTTGCCC 60.324 55.000 0.00 0.00 0.00 5.36
4486 5827 3.431725 GCCTCCTTTTGCCCGTCG 61.432 66.667 0.00 0.00 0.00 5.12
4490 5831 3.788766 CCTTTTGCCCGTCGCTCG 61.789 66.667 0.00 0.00 38.78 5.03
4491 5832 4.445545 CTTTTGCCCGTCGCTCGC 62.446 66.667 0.00 0.00 38.78 5.03
4544 5885 2.029844 GCTCGGCCTGTGAGTGAAC 61.030 63.158 0.00 0.00 35.85 3.18
4580 5921 1.664321 CGGCTACGGCTACTGGTCTT 61.664 60.000 0.00 0.00 38.73 3.01
4581 5922 0.179108 GGCTACGGCTACTGGTCTTG 60.179 60.000 0.00 0.00 38.73 3.02
4582 5923 0.179108 GCTACGGCTACTGGTCTTGG 60.179 60.000 0.00 0.00 35.22 3.61
4583 5924 1.183549 CTACGGCTACTGGTCTTGGT 58.816 55.000 0.00 0.00 0.00 3.67
4584 5925 0.892755 TACGGCTACTGGTCTTGGTG 59.107 55.000 0.00 0.00 0.00 4.17
4585 5926 1.119574 ACGGCTACTGGTCTTGGTGT 61.120 55.000 0.00 0.00 0.00 4.16
4586 5927 0.670546 CGGCTACTGGTCTTGGTGTG 60.671 60.000 0.00 0.00 0.00 3.82
4587 5928 0.321653 GGCTACTGGTCTTGGTGTGG 60.322 60.000 0.00 0.00 0.00 4.17
4588 5929 0.396811 GCTACTGGTCTTGGTGTGGT 59.603 55.000 0.00 0.00 0.00 4.16
4589 5930 1.878102 GCTACTGGTCTTGGTGTGGTG 60.878 57.143 0.00 0.00 0.00 4.17
4607 5948 1.183030 TGTGGTGTGGTAGGTCGGAG 61.183 60.000 0.00 0.00 0.00 4.63
4648 5989 1.068472 TCGGAGAGTGCTTTCGAAGTC 60.068 52.381 0.00 0.00 30.91 3.01
4656 5997 1.860078 CTTTCGAAGTCACACGGCC 59.140 57.895 0.00 0.00 0.00 6.13
4665 6006 4.742201 CACACGGCCACGGAGAGG 62.742 72.222 2.24 0.00 46.48 3.69
4713 6064 3.363788 CGTTTATACGTGTGCAGTTCC 57.636 47.619 0.00 0.00 42.72 3.62
4718 6069 1.790755 TACGTGTGCAGTTCCATGAC 58.209 50.000 0.00 0.00 0.00 3.06
4746 6097 2.430244 TCGTCAAACTCGGCGAGC 60.430 61.111 34.76 17.99 32.04 5.03
4761 6112 1.571460 GAGCAGTGCGACAACAAGG 59.429 57.895 10.00 0.00 0.00 3.61
4782 6133 1.710773 CATCATCGTCGTCTATGCACG 59.289 52.381 0.00 0.00 41.36 5.34
4806 6157 5.359576 GGTTTGTGGTTGGCTCATTCATATA 59.640 40.000 0.00 0.00 0.00 0.86
4807 6158 6.265577 GTTTGTGGTTGGCTCATTCATATAC 58.734 40.000 0.00 0.00 0.00 1.47
4810 6161 4.449068 GTGGTTGGCTCATTCATATACGAG 59.551 45.833 0.00 0.00 0.00 4.18
4813 6164 5.634020 GGTTGGCTCATTCATATACGAGTAC 59.366 44.000 0.00 0.00 0.00 2.73
4814 6165 6.448006 GTTGGCTCATTCATATACGAGTACT 58.552 40.000 0.00 0.00 0.00 2.73
4815 6166 6.255596 TGGCTCATTCATATACGAGTACTC 57.744 41.667 13.18 13.18 0.00 2.59
4816 6167 6.004574 TGGCTCATTCATATACGAGTACTCT 58.995 40.000 20.34 10.13 0.00 3.24
4817 6168 7.166167 TGGCTCATTCATATACGAGTACTCTA 58.834 38.462 20.34 11.86 0.00 2.43
4818 6169 7.119407 TGGCTCATTCATATACGAGTACTCTAC 59.881 40.741 20.34 0.00 0.00 2.59
4819 6170 7.119407 GGCTCATTCATATACGAGTACTCTACA 59.881 40.741 20.34 5.92 0.00 2.74
4820 6171 8.172484 GCTCATTCATATACGAGTACTCTACAG 58.828 40.741 20.34 7.56 0.00 2.74
4821 6172 9.425577 CTCATTCATATACGAGTACTCTACAGA 57.574 37.037 20.34 8.12 0.00 3.41
4870 6269 0.464373 CAGCTGGAATACCATGCCGT 60.464 55.000 5.57 0.00 45.87 5.68
4898 6304 4.082787 ACCTCCATTAAACAGACGCAATTG 60.083 41.667 0.00 0.00 0.00 2.32
4912 6318 3.703558 GCAATTGTGCGGTGTTTTATG 57.296 42.857 7.40 0.00 41.93 1.90
4913 6319 2.159854 GCAATTGTGCGGTGTTTTATGC 60.160 45.455 7.40 0.00 41.93 3.14
4914 6320 3.316283 CAATTGTGCGGTGTTTTATGCT 58.684 40.909 0.00 0.00 0.00 3.79
4915 6321 4.480541 CAATTGTGCGGTGTTTTATGCTA 58.519 39.130 0.00 0.00 0.00 3.49
4916 6322 3.546002 TTGTGCGGTGTTTTATGCTAC 57.454 42.857 0.00 0.00 0.00 3.58
4917 6323 1.807742 TGTGCGGTGTTTTATGCTACC 59.192 47.619 0.00 0.00 0.00 3.18
4936 6342 8.392372 TGCTACCACTAGTAATAGTATCTGTG 57.608 38.462 1.94 0.00 0.00 3.66
4955 6361 0.737219 GGTGAGCAGCAGCAATAAGG 59.263 55.000 3.17 0.00 44.31 2.69
4956 6362 1.457346 GTGAGCAGCAGCAATAAGGT 58.543 50.000 3.17 0.00 45.49 3.50
4957 6363 1.399791 GTGAGCAGCAGCAATAAGGTC 59.600 52.381 3.17 0.00 45.49 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.314302 GGCAAGCAGATGATGATGGC 59.686 55.000 0.00 0.00 43.96 4.40
15 16 3.497932 GCGAGCTCTGGCAAGCAG 61.498 66.667 12.85 14.39 45.00 4.24
32 33 2.125512 CCGGGAGAACAAGAGCGG 60.126 66.667 0.00 0.00 0.00 5.52
51 52 2.515523 CTTGCTGATGCCCTCCCG 60.516 66.667 0.00 0.00 38.71 5.14
53 54 1.318158 CCAACTTGCTGATGCCCTCC 61.318 60.000 0.00 0.00 38.71 4.30
54 55 1.941999 GCCAACTTGCTGATGCCCTC 61.942 60.000 0.00 0.00 38.71 4.30
55 56 1.980772 GCCAACTTGCTGATGCCCT 60.981 57.895 0.00 0.00 38.71 5.19
58 59 1.080298 GTGGCCAACTTGCTGATGC 60.080 57.895 7.24 0.00 40.20 3.91
59 60 1.180456 TGGTGGCCAACTTGCTGATG 61.180 55.000 24.13 0.00 0.00 3.07
60 61 0.251922 ATGGTGGCCAACTTGCTGAT 60.252 50.000 24.13 2.14 36.95 2.90
61 62 0.469705 AATGGTGGCCAACTTGCTGA 60.470 50.000 24.13 0.00 36.95 4.26
62 63 0.037975 GAATGGTGGCCAACTTGCTG 60.038 55.000 24.13 0.00 36.95 4.41
63 64 0.178953 AGAATGGTGGCCAACTTGCT 60.179 50.000 24.13 17.62 36.95 3.91
64 65 0.681175 AAGAATGGTGGCCAACTTGC 59.319 50.000 24.13 15.22 36.95 4.01
65 66 2.229784 GAGAAGAATGGTGGCCAACTTG 59.770 50.000 24.13 0.00 36.95 3.16
66 67 2.108952 AGAGAAGAATGGTGGCCAACTT 59.891 45.455 24.13 13.85 36.95 2.66
67 68 1.707427 AGAGAAGAATGGTGGCCAACT 59.293 47.619 24.13 0.98 36.95 3.16
68 69 2.087646 GAGAGAAGAATGGTGGCCAAC 58.912 52.381 15.99 15.99 36.95 3.77
69 70 1.988107 AGAGAGAAGAATGGTGGCCAA 59.012 47.619 7.24 0.00 36.95 4.52
77 78 4.737352 GCTGCTACTCCAGAGAGAAGAATG 60.737 50.000 0.70 0.00 43.39 2.67
84 85 0.749818 TCGGCTGCTACTCCAGAGAG 60.750 60.000 0.70 0.00 46.36 3.20
90 91 1.731093 GAGACTCGGCTGCTACTCC 59.269 63.158 0.00 0.00 0.00 3.85
93 94 1.353804 CTCGAGACTCGGCTGCTAC 59.646 63.158 23.92 0.00 40.88 3.58
94 95 2.473760 GCTCGAGACTCGGCTGCTA 61.474 63.158 23.92 3.32 40.88 3.49
97 98 3.805307 ACGCTCGAGACTCGGCTG 61.805 66.667 23.92 20.42 40.88 4.85
154 155 2.256461 CACGCTTGGCAGGCTTTC 59.744 61.111 19.79 0.00 0.00 2.62
163 164 1.741401 TTCAGGATCGCACGCTTGG 60.741 57.895 0.00 0.00 0.00 3.61
189 190 9.733556 AATAATGTCAAAAGGGGAAATTTAACC 57.266 29.630 0.00 0.00 0.00 2.85
199 200 6.935741 TCACGATAATAATGTCAAAAGGGG 57.064 37.500 0.00 0.00 0.00 4.79
202 203 7.429340 GCAGGTTCACGATAATAATGTCAAAAG 59.571 37.037 0.00 0.00 0.00 2.27
206 207 4.814234 GGCAGGTTCACGATAATAATGTCA 59.186 41.667 0.00 0.00 0.00 3.58
207 208 4.084537 CGGCAGGTTCACGATAATAATGTC 60.085 45.833 0.00 0.00 0.00 3.06
208 209 3.807622 CGGCAGGTTCACGATAATAATGT 59.192 43.478 0.00 0.00 0.00 2.71
209 210 3.186409 CCGGCAGGTTCACGATAATAATG 59.814 47.826 0.00 0.00 0.00 1.90
210 211 3.399330 CCGGCAGGTTCACGATAATAAT 58.601 45.455 0.00 0.00 0.00 1.28
211 212 2.484065 CCCGGCAGGTTCACGATAATAA 60.484 50.000 1.11 0.00 35.12 1.40
212 213 1.069513 CCCGGCAGGTTCACGATAATA 59.930 52.381 1.11 0.00 35.12 0.98
213 214 0.179056 CCCGGCAGGTTCACGATAAT 60.179 55.000 1.11 0.00 35.12 1.28
214 215 1.219664 CCCGGCAGGTTCACGATAA 59.780 57.895 1.11 0.00 35.12 1.75
215 216 2.897207 CCCGGCAGGTTCACGATA 59.103 61.111 1.11 0.00 35.12 2.92
231 232 1.871039 TGAGAACGCAGCAGTAAAACC 59.129 47.619 0.00 0.00 0.00 3.27
248 249 3.644606 ACCCAGTGCCTGCCTGAG 61.645 66.667 8.57 0.10 31.38 3.35
259 260 1.890876 TACGTACGTACACACCCAGT 58.109 50.000 23.60 14.41 0.00 4.00
302 303 0.955919 GGCCTTCTGCTGGTGTACAC 60.956 60.000 18.01 18.01 40.92 2.90
331 332 4.394712 AGTTCCTCGGGCAAGGCG 62.395 66.667 0.47 0.00 36.29 5.52
342 343 1.680338 GCATTTATCGGCCAGTTCCT 58.320 50.000 2.24 0.00 0.00 3.36
431 439 1.007336 GTTCGTGAGTGGTACTGCCG 61.007 60.000 0.00 0.00 41.21 5.69
432 440 0.669625 GGTTCGTGAGTGGTACTGCC 60.670 60.000 0.00 0.00 37.90 4.85
433 441 0.317479 AGGTTCGTGAGTGGTACTGC 59.683 55.000 0.00 0.00 0.00 4.40
434 442 2.814280 AAGGTTCGTGAGTGGTACTG 57.186 50.000 0.00 0.00 0.00 2.74
435 443 3.463944 CAAAAGGTTCGTGAGTGGTACT 58.536 45.455 0.00 0.00 0.00 2.73
436 444 2.032290 GCAAAAGGTTCGTGAGTGGTAC 60.032 50.000 0.00 0.00 0.00 3.34
437 445 2.158871 AGCAAAAGGTTCGTGAGTGGTA 60.159 45.455 0.00 0.00 0.00 3.25
438 446 1.021968 GCAAAAGGTTCGTGAGTGGT 58.978 50.000 0.00 0.00 0.00 4.16
439 447 1.264288 GAGCAAAAGGTTCGTGAGTGG 59.736 52.381 0.00 0.00 0.00 4.00
440 448 1.070577 CGAGCAAAAGGTTCGTGAGTG 60.071 52.381 0.00 0.00 44.11 3.51
441 449 1.217882 CGAGCAAAAGGTTCGTGAGT 58.782 50.000 0.00 0.00 44.11 3.41
447 455 0.234884 CGACCACGAGCAAAAGGTTC 59.765 55.000 0.00 0.00 42.66 3.62
465 473 1.339055 TGAGTGAATCCCAAGCTTCCG 60.339 52.381 0.00 0.00 0.00 4.30
476 484 2.162681 CTGGTTGGGGTTGAGTGAATC 58.837 52.381 0.00 0.00 0.00 2.52
493 501 1.167851 TTCTTTCGGAATGCTGCTGG 58.832 50.000 0.00 0.00 0.00 4.85
496 504 2.032675 GGAGATTCTTTCGGAATGCTGC 59.967 50.000 0.00 0.00 43.90 5.25
497 505 3.273434 TGGAGATTCTTTCGGAATGCTG 58.727 45.455 0.00 0.00 43.90 4.41
498 506 3.539604 CTGGAGATTCTTTCGGAATGCT 58.460 45.455 0.00 0.00 43.90 3.79
499 507 2.032675 GCTGGAGATTCTTTCGGAATGC 59.967 50.000 0.00 0.00 43.90 3.56
500 508 2.286294 CGCTGGAGATTCTTTCGGAATG 59.714 50.000 0.00 0.00 43.90 2.67
501 509 2.555199 CGCTGGAGATTCTTTCGGAAT 58.445 47.619 0.00 0.00 46.24 3.01
502 510 2.007049 GCGCTGGAGATTCTTTCGGAA 61.007 52.381 0.00 0.00 38.41 4.30
506 522 0.741221 ACCGCGCTGGAGATTCTTTC 60.741 55.000 22.10 0.00 42.00 2.62
567 584 9.902196 GAATTGTTTAGGAAATCGTTTAGGAAA 57.098 29.630 0.00 0.00 0.00 3.13
568 585 9.069082 TGAATTGTTTAGGAAATCGTTTAGGAA 57.931 29.630 0.00 0.00 0.00 3.36
569 586 8.624367 TGAATTGTTTAGGAAATCGTTTAGGA 57.376 30.769 0.00 0.00 0.00 2.94
571 588 9.503427 GGATGAATTGTTTAGGAAATCGTTTAG 57.497 33.333 0.00 0.00 0.00 1.85
572 589 9.015367 TGGATGAATTGTTTAGGAAATCGTTTA 57.985 29.630 0.00 0.00 0.00 2.01
573 590 7.891561 TGGATGAATTGTTTAGGAAATCGTTT 58.108 30.769 0.00 0.00 0.00 3.60
574 591 7.461182 TGGATGAATTGTTTAGGAAATCGTT 57.539 32.000 0.00 0.00 0.00 3.85
618 649 4.927978 AATACTACTGCTCCAGTGCTAG 57.072 45.455 8.06 0.85 45.01 3.42
626 657 7.491696 ACACGAGAAAAATAATACTACTGCTCC 59.508 37.037 0.00 0.00 0.00 4.70
627 658 8.408743 ACACGAGAAAAATAATACTACTGCTC 57.591 34.615 0.00 0.00 0.00 4.26
628 659 8.251721 AGACACGAGAAAAATAATACTACTGCT 58.748 33.333 0.00 0.00 0.00 4.24
683 714 1.172180 TGAAACGAAAGGCTGGCTGG 61.172 55.000 3.84 0.00 0.00 4.85
684 715 0.040067 GTGAAACGAAAGGCTGGCTG 60.040 55.000 3.84 0.00 0.00 4.85
685 716 1.172812 GGTGAAACGAAAGGCTGGCT 61.173 55.000 0.00 0.00 38.12 4.75
686 717 1.172812 AGGTGAAACGAAAGGCTGGC 61.173 55.000 0.00 0.00 38.12 4.85
697 728 2.034685 GTCTTTTGAGGCCAGGTGAAAC 59.965 50.000 5.01 0.00 0.00 2.78
703 734 0.674895 CGGAGTCTTTTGAGGCCAGG 60.675 60.000 5.01 0.00 0.00 4.45
705 736 1.302511 GCGGAGTCTTTTGAGGCCA 60.303 57.895 5.01 0.00 0.00 5.36
722 753 1.029681 GATTGATTAACCCCGGTGGC 58.970 55.000 0.00 0.00 37.83 5.01
725 756 2.512056 TCATGGATTGATTAACCCCGGT 59.488 45.455 0.00 0.00 0.00 5.28
726 757 3.222173 TCATGGATTGATTAACCCCGG 57.778 47.619 0.00 0.00 0.00 5.73
736 767 5.918426 TTGCTGCTTTAATCATGGATTGA 57.082 34.783 0.00 0.00 39.12 2.57
737 768 6.277605 TGATTGCTGCTTTAATCATGGATTG 58.722 36.000 9.12 0.00 38.12 2.67
742 856 4.049186 GCCTGATTGCTGCTTTAATCATG 58.951 43.478 12.48 11.24 41.10 3.07
745 859 2.223900 GGGCCTGATTGCTGCTTTAATC 60.224 50.000 0.84 2.74 34.64 1.75
755 869 3.957535 CGCGATGGGCCTGATTGC 61.958 66.667 0.00 14.46 38.94 3.56
756 870 3.957535 GCGCGATGGGCCTGATTG 61.958 66.667 12.10 0.00 38.94 2.67
800 915 1.231958 TGGAAGGTTTGGTTAGCGCG 61.232 55.000 0.00 0.00 0.00 6.86
802 917 6.687081 TTATAATGGAAGGTTTGGTTAGCG 57.313 37.500 0.00 0.00 0.00 4.26
852 967 0.183731 GAAATAGAGTGGGCAGGGGG 59.816 60.000 0.00 0.00 0.00 5.40
919 1036 3.851955 GCATGGCCATGGAGAAGG 58.148 61.111 39.72 18.73 39.16 3.46
982 1102 2.941563 ATCGTAGACCGGGGGAAGGG 62.942 65.000 6.32 0.00 42.51 3.95
989 1109 4.280494 CCGCCATCGTAGACCGGG 62.280 72.222 6.32 0.00 42.51 5.73
992 1112 1.227556 ATTGCCGCCATCGTAGACC 60.228 57.895 0.00 0.00 42.51 3.85
994 1114 1.887242 GCATTGCCGCCATCGTAGA 60.887 57.895 0.00 0.00 45.75 2.59
1359 1499 4.615901 TGCTGGAAGTACATGGCG 57.384 55.556 0.00 0.00 35.30 5.69
1421 1561 3.842925 TTGAGGCGCACCAGGTTCC 62.843 63.158 10.83 0.00 39.06 3.62
1434 1574 0.321564 TGTTCTGGCCGATGTTGAGG 60.322 55.000 0.00 0.00 0.00 3.86
1473 1613 0.250295 TGAGCTTGTTGAAGTCGGGG 60.250 55.000 0.00 0.00 0.00 5.73
1520 1660 2.809601 CGCCGGAGAAGTCGTTGG 60.810 66.667 5.05 0.00 0.00 3.77
2064 2219 4.083862 AGCTTCTTCGACCCGGCC 62.084 66.667 0.00 0.00 0.00 6.13
2067 2222 0.457851 AGATCAGCTTCTTCGACCCG 59.542 55.000 0.00 0.00 0.00 5.28
2412 2568 3.813724 GGCGAGAGGAAACTGTAAAAAGT 59.186 43.478 0.00 0.00 44.43 2.66
2416 2572 1.337447 CCGGCGAGAGGAAACTGTAAA 60.337 52.381 9.30 0.00 44.43 2.01
2418 2574 1.601419 CCCGGCGAGAGGAAACTGTA 61.601 60.000 9.30 0.00 44.43 2.74
2419 2575 2.657237 CCGGCGAGAGGAAACTGT 59.343 61.111 9.30 0.00 44.43 3.55
2420 2576 2.125512 CCCGGCGAGAGGAAACTG 60.126 66.667 9.30 0.00 44.43 3.16
2472 2653 1.396653 CCAGCCTGTTTGGATCCATC 58.603 55.000 17.06 12.55 37.96 3.51
2473 2654 0.685458 GCCAGCCTGTTTGGATCCAT 60.685 55.000 17.06 0.00 37.96 3.41
2474 2655 1.304381 GCCAGCCTGTTTGGATCCA 60.304 57.895 11.44 11.44 37.96 3.41
2539 2731 1.166531 GGAATGGATCCGGCGAAAGG 61.167 60.000 9.30 0.00 38.79 3.11
2548 2740 2.437085 AAGGGAAACGGAATGGATCC 57.563 50.000 4.20 4.20 45.57 3.36
2611 2857 0.102300 GCAATGGCGGGGACATAAAC 59.898 55.000 0.00 0.00 27.35 2.01
2633 2879 2.666272 TGAAATGTACACCTTGGGCA 57.334 45.000 0.00 0.00 0.00 5.36
2635 2881 3.443681 GTCCATGAAATGTACACCTTGGG 59.556 47.826 18.33 9.54 44.81 4.12
2636 2882 3.126858 CGTCCATGAAATGTACACCTTGG 59.873 47.826 0.00 8.73 44.81 3.61
2637 2883 3.751175 ACGTCCATGAAATGTACACCTTG 59.249 43.478 0.00 0.00 44.81 3.61
2638 2884 4.000988 GACGTCCATGAAATGTACACCTT 58.999 43.478 3.51 0.00 44.81 3.50
2639 2885 3.596214 GACGTCCATGAAATGTACACCT 58.404 45.455 3.51 0.00 44.81 4.00
2640 2886 2.676342 GGACGTCCATGAAATGTACACC 59.324 50.000 29.75 0.00 44.81 4.16
2641 2887 3.331150 TGGACGTCCATGAAATGTACAC 58.669 45.455 33.23 2.32 44.81 2.90
2642 2888 3.686916 TGGACGTCCATGAAATGTACA 57.313 42.857 33.23 5.92 44.81 2.90
2653 2899 2.612604 CGTATGAAATGTGGACGTCCA 58.387 47.619 33.23 33.23 45.30 4.02
2654 2900 1.326548 GCGTATGAAATGTGGACGTCC 59.673 52.381 28.17 28.17 35.97 4.79
2655 2901 1.326548 GGCGTATGAAATGTGGACGTC 59.673 52.381 7.13 7.13 35.97 4.34
2656 2902 1.365699 GGCGTATGAAATGTGGACGT 58.634 50.000 0.00 0.00 35.97 4.34
2657 2903 0.655733 GGGCGTATGAAATGTGGACG 59.344 55.000 0.00 0.00 36.62 4.79
2658 2904 0.655733 CGGGCGTATGAAATGTGGAC 59.344 55.000 0.00 0.00 0.00 4.02
2659 2905 0.537653 TCGGGCGTATGAAATGTGGA 59.462 50.000 0.00 0.00 0.00 4.02
2660 2906 1.063469 GTTCGGGCGTATGAAATGTGG 59.937 52.381 0.00 0.00 0.00 4.17
2661 2907 2.006888 AGTTCGGGCGTATGAAATGTG 58.993 47.619 0.00 0.00 0.00 3.21
2675 2921 1.196808 AGCGTACAAATTGCAGTTCGG 59.803 47.619 0.00 0.00 0.00 4.30
2700 2946 4.260825 CCTCTACTACTGTAGTCGTGCATG 60.261 50.000 22.79 0.00 44.74 4.06
2701 2947 3.878103 CCTCTACTACTGTAGTCGTGCAT 59.122 47.826 22.79 0.71 44.74 3.96
2703 2949 2.031930 GCCTCTACTACTGTAGTCGTGC 59.968 54.545 22.79 18.09 44.74 5.34
2704 2950 3.268330 TGCCTCTACTACTGTAGTCGTG 58.732 50.000 22.79 16.64 44.74 4.35
2723 2976 1.739562 CTGAGCCCGACAACTCTGC 60.740 63.158 0.00 0.00 33.92 4.26
2724 2977 1.739562 GCTGAGCCCGACAACTCTG 60.740 63.158 0.00 0.00 35.61 3.35
2725 2978 2.659610 GCTGAGCCCGACAACTCT 59.340 61.111 0.00 0.00 33.92 3.24
2726 2979 2.811317 CGCTGAGCCCGACAACTC 60.811 66.667 0.00 0.00 0.00 3.01
2727 2980 2.660258 AAACGCTGAGCCCGACAACT 62.660 55.000 0.00 0.00 0.00 3.16
2728 2981 2.251642 AAACGCTGAGCCCGACAAC 61.252 57.895 0.00 0.00 0.00 3.32
2766 3019 4.557205 CGCCTTAAACTAGCGGATTAGAT 58.443 43.478 0.00 0.00 45.88 1.98
2775 3036 1.715862 GCTGGCCGCCTTAAACTAGC 61.716 60.000 11.61 5.39 0.00 3.42
2793 3054 4.347453 CAAGGCCTGGCACGTTGC 62.347 66.667 22.05 1.14 44.08 4.17
2833 3103 0.807496 GAGCTTAAGCCAGGCAAGTG 59.193 55.000 23.71 1.99 43.38 3.16
2842 3112 0.107654 ATGGACCACGAGCTTAAGCC 60.108 55.000 23.71 13.93 43.38 4.35
2870 3140 4.157246 GTTACTGGATTTCAAAAGGGGGT 58.843 43.478 0.00 0.00 0.00 4.95
2872 3142 4.832823 AGTGTTACTGGATTTCAAAAGGGG 59.167 41.667 0.00 0.00 0.00 4.79
2873 3143 5.772521 CAGTGTTACTGGATTTCAAAAGGG 58.227 41.667 1.08 0.00 42.35 3.95
2891 3161 5.450137 GCATAGTTGTAGTATCGGACAGTGT 60.450 44.000 0.00 0.00 0.00 3.55
2892 3162 4.976731 GCATAGTTGTAGTATCGGACAGTG 59.023 45.833 0.00 0.00 0.00 3.66
2902 3189 2.421073 ACGTGCTCGCATAGTTGTAGTA 59.579 45.455 8.29 0.00 41.18 1.82
2903 3190 1.201647 ACGTGCTCGCATAGTTGTAGT 59.798 47.619 8.29 0.00 41.18 2.73
2904 3191 1.909376 ACGTGCTCGCATAGTTGTAG 58.091 50.000 8.29 0.00 41.18 2.74
2947 3239 4.590850 ACTTGCCAAGGAAATTTCACTC 57.409 40.909 19.49 2.86 0.00 3.51
2948 3240 4.696455 CAACTTGCCAAGGAAATTTCACT 58.304 39.130 19.49 11.17 0.00 3.41
2949 3241 3.248363 GCAACTTGCCAAGGAAATTTCAC 59.752 43.478 19.49 9.16 37.42 3.18
2951 3243 2.476241 CGCAACTTGCCAAGGAAATTTC 59.524 45.455 9.64 9.83 41.12 2.17
3008 3333 3.246226 GTCACATGGACGCATATCAAGTC 59.754 47.826 0.00 0.00 36.65 3.01
3053 3378 2.062070 GGGAGGAATCCCGAGGATG 58.938 63.158 6.24 0.00 42.27 3.51
3105 3430 2.405025 GCTTTTAAATCTGCGTGTGTGC 59.595 45.455 0.00 0.00 0.00 4.57
3114 3439 6.195983 GCTCACGAATGATGCTTTTAAATCTG 59.804 38.462 0.00 0.00 33.22 2.90
3126 3453 1.143838 TCCGGGCTCACGAATGATG 59.856 57.895 0.00 0.00 33.22 3.07
3181 3519 0.160182 GGTTTTACGTCTCGTGTGCG 59.840 55.000 0.00 3.58 41.39 5.34
3183 3521 2.346924 CGTTGGTTTTACGTCTCGTGTG 60.347 50.000 0.00 0.00 41.39 3.82
3185 3523 1.190763 CCGTTGGTTTTACGTCTCGTG 59.809 52.381 0.00 0.00 41.39 4.35
3186 3524 1.066908 TCCGTTGGTTTTACGTCTCGT 59.933 47.619 0.00 0.00 44.35 4.18
3187 3525 1.769733 TCCGTTGGTTTTACGTCTCG 58.230 50.000 0.00 0.00 37.30 4.04
3188 3526 2.096565 GCTTCCGTTGGTTTTACGTCTC 60.097 50.000 0.00 0.00 37.30 3.36
3189 3527 1.869132 GCTTCCGTTGGTTTTACGTCT 59.131 47.619 0.00 0.00 37.30 4.18
3190 3528 1.069703 GGCTTCCGTTGGTTTTACGTC 60.070 52.381 0.00 0.00 37.30 4.34
3211 3549 7.095816 ACACGGTTGTTTCTTTCTTTTCTTTTG 60.096 33.333 0.00 0.00 28.43 2.44
3212 3550 6.926826 ACACGGTTGTTTCTTTCTTTTCTTTT 59.073 30.769 0.00 0.00 28.43 2.27
3213 3551 6.452242 ACACGGTTGTTTCTTTCTTTTCTTT 58.548 32.000 0.00 0.00 28.43 2.52
3214 3552 6.020971 ACACGGTTGTTTCTTTCTTTTCTT 57.979 33.333 0.00 0.00 28.43 2.52
3215 3553 5.638596 ACACGGTTGTTTCTTTCTTTTCT 57.361 34.783 0.00 0.00 28.43 2.52
3216 3554 5.444087 GCAACACGGTTGTTTCTTTCTTTTC 60.444 40.000 15.22 0.00 43.89 2.29
3246 3584 9.817809 ATTATTAACACACATCTCATCGTAGTT 57.182 29.630 0.00 0.00 0.00 2.24
3247 3585 9.464714 GATTATTAACACACATCTCATCGTAGT 57.535 33.333 0.00 0.00 0.00 2.73
3248 3586 9.684448 AGATTATTAACACACATCTCATCGTAG 57.316 33.333 0.00 0.00 0.00 3.51
3250 3588 8.948631 AAGATTATTAACACACATCTCATCGT 57.051 30.769 0.00 0.00 0.00 3.73
3281 3650 3.286751 GCACGCACACCACCACAT 61.287 61.111 0.00 0.00 0.00 3.21
3507 3876 2.683933 ACGCGGGTCAGGGAGAAT 60.684 61.111 12.47 0.00 0.00 2.40
3647 4016 4.148825 CCAGGCCCTCCTCGTTCG 62.149 72.222 0.00 0.00 41.93 3.95
3690 4059 3.075641 GTCCACTCCTCCCGGACC 61.076 72.222 0.73 0.00 42.87 4.46
3746 5055 2.060980 ACCATCTCCTCCTCCACGC 61.061 63.158 0.00 0.00 0.00 5.34
3942 5257 1.168407 TCGGTTATAGGGACGGCTCG 61.168 60.000 0.00 0.00 0.00 5.03
3943 5258 0.313357 GTCGGTTATAGGGACGGCTC 59.687 60.000 0.00 0.00 0.00 4.70
3944 5259 1.111715 GGTCGGTTATAGGGACGGCT 61.112 60.000 0.00 0.00 0.00 5.52
3948 5263 1.365267 GCCGGTCGGTTATAGGGAC 59.635 63.158 11.25 0.00 37.65 4.46
3994 5309 1.393539 ACTGATGAATTTCCGTTCGCG 59.606 47.619 0.00 0.00 40.93 5.87
3995 5310 3.163594 CAACTGATGAATTTCCGTTCGC 58.836 45.455 0.00 0.00 0.00 4.70
4094 5409 7.503521 AACAGGAGAAGAAGATGAAAGAAAC 57.496 36.000 0.00 0.00 0.00 2.78
4097 5412 5.473931 CGAACAGGAGAAGAAGATGAAAGA 58.526 41.667 0.00 0.00 0.00 2.52
4116 5431 1.540267 GAAGAAAAAGAGGGGCCGAAC 59.460 52.381 0.00 0.00 0.00 3.95
4119 5434 1.813178 GAAGAAGAAAAAGAGGGGCCG 59.187 52.381 0.00 0.00 0.00 6.13
4127 5442 9.715123 GTGAGAGAAAAGAAGAAGAAGAAAAAG 57.285 33.333 0.00 0.00 0.00 2.27
4132 5447 5.509840 CCCGTGAGAGAAAAGAAGAAGAAGA 60.510 44.000 0.00 0.00 0.00 2.87
4133 5448 4.688413 CCCGTGAGAGAAAAGAAGAAGAAG 59.312 45.833 0.00 0.00 0.00 2.85
4134 5449 4.632153 CCCGTGAGAGAAAAGAAGAAGAA 58.368 43.478 0.00 0.00 0.00 2.52
4135 5450 3.555168 GCCCGTGAGAGAAAAGAAGAAGA 60.555 47.826 0.00 0.00 0.00 2.87
4136 5451 2.739379 GCCCGTGAGAGAAAAGAAGAAG 59.261 50.000 0.00 0.00 0.00 2.85
4137 5452 2.368875 AGCCCGTGAGAGAAAAGAAGAA 59.631 45.455 0.00 0.00 0.00 2.52
4138 5453 1.971357 AGCCCGTGAGAGAAAAGAAGA 59.029 47.619 0.00 0.00 0.00 2.87
4139 5454 2.464157 AGCCCGTGAGAGAAAAGAAG 57.536 50.000 0.00 0.00 0.00 2.85
4140 5455 2.878406 CAAAGCCCGTGAGAGAAAAGAA 59.122 45.455 0.00 0.00 0.00 2.52
4141 5456 2.104111 TCAAAGCCCGTGAGAGAAAAGA 59.896 45.455 0.00 0.00 0.00 2.52
4147 5462 2.005451 CAGAATCAAAGCCCGTGAGAG 58.995 52.381 0.00 0.00 0.00 3.20
4184 5499 2.603953 GCTTACAGTAGTGTTCCGACC 58.396 52.381 8.85 0.00 38.19 4.79
4188 5503 4.053295 TCAAACGCTTACAGTAGTGTTCC 58.947 43.478 8.85 0.00 45.39 3.62
4189 5504 5.840940 ATCAAACGCTTACAGTAGTGTTC 57.159 39.130 8.85 0.00 45.39 3.18
4191 5506 5.539048 AGAATCAAACGCTTACAGTAGTGT 58.461 37.500 8.55 8.55 40.42 3.55
4192 5507 6.299604 CAAGAATCAAACGCTTACAGTAGTG 58.700 40.000 0.00 0.00 0.00 2.74
4233 5548 4.760715 AGGTATAGTACAGTACAGGCATCG 59.239 45.833 13.37 0.00 0.00 3.84
4239 5554 7.170658 GTCGTCCTTAGGTATAGTACAGTACAG 59.829 44.444 13.37 0.00 0.00 2.74
4240 5555 6.986817 GTCGTCCTTAGGTATAGTACAGTACA 59.013 42.308 13.37 0.00 0.00 2.90
4241 5556 6.144724 CGTCGTCCTTAGGTATAGTACAGTAC 59.855 46.154 2.05 2.05 0.00 2.73
4242 5557 6.040504 TCGTCGTCCTTAGGTATAGTACAGTA 59.959 42.308 0.00 0.00 0.00 2.74
4243 5558 5.053145 CGTCGTCCTTAGGTATAGTACAGT 58.947 45.833 0.00 0.00 0.00 3.55
4251 5566 2.158564 TGGGATCGTCGTCCTTAGGTAT 60.159 50.000 11.83 0.00 38.38 2.73
4265 5580 1.224069 GCATGACATCCGTGGGATCG 61.224 60.000 0.00 0.00 40.98 3.69
4266 5581 0.886490 GGCATGACATCCGTGGGATC 60.886 60.000 0.00 0.00 40.98 3.36
4267 5582 1.149174 GGCATGACATCCGTGGGAT 59.851 57.895 0.00 0.00 44.21 3.85
4268 5583 2.297129 TGGCATGACATCCGTGGGA 61.297 57.895 0.00 0.00 35.55 4.37
4269 5584 2.114670 GTGGCATGACATCCGTGGG 61.115 63.158 3.50 0.00 32.41 4.61
4271 5586 2.463620 CGGTGGCATGACATCCGTG 61.464 63.158 25.45 2.97 36.99 4.94
4272 5587 2.125147 CGGTGGCATGACATCCGT 60.125 61.111 25.45 0.00 36.99 4.69
4273 5588 1.745115 AACGGTGGCATGACATCCG 60.745 57.895 29.41 29.41 45.53 4.18
4274 5589 1.802636 CAACGGTGGCATGACATCC 59.197 57.895 3.50 7.35 0.00 3.51
4275 5590 1.137404 GCAACGGTGGCATGACATC 59.863 57.895 3.50 1.68 0.00 3.06
4276 5591 3.277133 GCAACGGTGGCATGACAT 58.723 55.556 3.50 0.00 0.00 3.06
4289 5604 1.066257 CACAACAGCTGGTGGCAAC 59.934 57.895 33.95 0.00 44.79 4.17
4307 5622 5.161358 GGGTGTTTTAAGTAAGCAAGCATC 58.839 41.667 0.00 0.00 0.00 3.91
4318 5633 3.243602 GCAAATCACCGGGTGTTTTAAGT 60.244 43.478 27.16 10.38 34.85 2.24
4330 5653 1.752501 CTACCGCGAGCAAATCACCG 61.753 60.000 8.23 0.00 0.00 4.94
4331 5654 2.006772 CTACCGCGAGCAAATCACC 58.993 57.895 8.23 0.00 0.00 4.02
4366 5689 2.018324 GCAGGCAAAGCAAAGCGTC 61.018 57.895 0.00 0.00 0.00 5.19
4367 5690 2.028043 GCAGGCAAAGCAAAGCGT 59.972 55.556 0.00 0.00 0.00 5.07
4368 5691 2.735857 GGCAGGCAAAGCAAAGCG 60.736 61.111 0.00 0.00 0.00 4.68
4381 5704 2.177594 AAAGTGAGCGAGGGAGGCAG 62.178 60.000 0.00 0.00 0.00 4.85
4392 5733 3.299340 TTAGACGAGGTGAAAGTGAGC 57.701 47.619 0.00 0.00 0.00 4.26
4459 5800 0.678048 AAAAGGAGGCTCATCACGGC 60.678 55.000 17.69 0.00 0.00 5.68
4526 5867 2.029844 GTTCACTCACAGGCCGAGC 61.030 63.158 6.09 0.00 33.58 5.03
4544 5885 2.507769 GTAGCCGGGTTTCGTCCG 60.508 66.667 13.43 0.00 46.43 4.79
4580 5921 1.272554 TACCACACCACACCACACCA 61.273 55.000 0.00 0.00 0.00 4.17
4581 5922 0.534203 CTACCACACCACACCACACC 60.534 60.000 0.00 0.00 0.00 4.16
4582 5923 0.534203 CCTACCACACCACACCACAC 60.534 60.000 0.00 0.00 0.00 3.82
4583 5924 0.983905 ACCTACCACACCACACCACA 60.984 55.000 0.00 0.00 0.00 4.17
4584 5925 0.250166 GACCTACCACACCACACCAC 60.250 60.000 0.00 0.00 0.00 4.16
4585 5926 1.750341 CGACCTACCACACCACACCA 61.750 60.000 0.00 0.00 0.00 4.17
4586 5927 1.005394 CGACCTACCACACCACACC 60.005 63.158 0.00 0.00 0.00 4.16
4587 5928 1.005394 CCGACCTACCACACCACAC 60.005 63.158 0.00 0.00 0.00 3.82
4588 5929 1.152504 TCCGACCTACCACACCACA 60.153 57.895 0.00 0.00 0.00 4.17
4589 5930 1.590147 CTCCGACCTACCACACCAC 59.410 63.158 0.00 0.00 0.00 4.16
4607 5948 5.293560 CGATAAAGAAAGAGGGATGTCTCC 58.706 45.833 0.00 0.00 41.26 3.71
4616 5957 4.116238 GCACTCTCCGATAAAGAAAGAGG 58.884 47.826 0.00 0.00 38.20 3.69
4617 5958 5.004922 AGCACTCTCCGATAAAGAAAGAG 57.995 43.478 0.00 0.00 39.47 2.85
4618 5959 5.407407 AAGCACTCTCCGATAAAGAAAGA 57.593 39.130 0.00 0.00 0.00 2.52
4619 5960 5.220303 CGAAAGCACTCTCCGATAAAGAAAG 60.220 44.000 0.00 0.00 0.00 2.62
4620 5961 4.625742 CGAAAGCACTCTCCGATAAAGAAA 59.374 41.667 0.00 0.00 0.00 2.52
4621 5962 4.082408 TCGAAAGCACTCTCCGATAAAGAA 60.082 41.667 0.00 0.00 0.00 2.52
4622 5963 3.442625 TCGAAAGCACTCTCCGATAAAGA 59.557 43.478 0.00 0.00 0.00 2.52
4623 5964 3.770666 TCGAAAGCACTCTCCGATAAAG 58.229 45.455 0.00 0.00 0.00 1.85
4624 5965 3.861276 TCGAAAGCACTCTCCGATAAA 57.139 42.857 0.00 0.00 0.00 1.40
4625 5966 3.192844 ACTTCGAAAGCACTCTCCGATAA 59.807 43.478 0.00 0.00 0.00 1.75
4626 5967 2.753452 ACTTCGAAAGCACTCTCCGATA 59.247 45.455 0.00 0.00 0.00 2.92
4627 5968 1.546476 ACTTCGAAAGCACTCTCCGAT 59.454 47.619 0.00 0.00 0.00 4.18
4628 5969 0.959553 ACTTCGAAAGCACTCTCCGA 59.040 50.000 0.00 0.00 0.00 4.55
4629 5970 1.335964 TGACTTCGAAAGCACTCTCCG 60.336 52.381 0.00 0.00 0.00 4.63
4648 5989 4.742201 CCTCTCCGTGGCCGTGTG 62.742 72.222 0.00 0.00 0.00 3.82
4656 5997 2.115911 CCTCGAGTCCCTCTCCGTG 61.116 68.421 12.31 0.00 39.84 4.94
4665 6006 0.381089 CGTACATGACCCTCGAGTCC 59.619 60.000 12.31 0.30 35.83 3.85
4669 6010 1.019673 GCTACGTACATGACCCTCGA 58.980 55.000 0.00 0.00 0.00 4.04
4671 6012 0.737219 ACGCTACGTACATGACCCTC 59.263 55.000 0.00 0.00 38.73 4.30
4672 6013 1.135199 CAACGCTACGTACATGACCCT 60.135 52.381 0.00 0.00 39.99 4.34
4673 6014 1.274596 CAACGCTACGTACATGACCC 58.725 55.000 0.00 0.00 39.99 4.46
4713 6064 2.509336 GACCCCGTCAGCGTCATG 60.509 66.667 0.00 0.00 36.15 3.07
4730 6081 2.720758 CTGCTCGCCGAGTTTGACG 61.721 63.158 16.50 0.00 31.39 4.35
4746 6097 0.110056 GATGCCTTGTTGTCGCACTG 60.110 55.000 0.00 0.00 34.87 3.66
4753 6104 1.078709 CGACGATGATGCCTTGTTGT 58.921 50.000 0.00 0.00 0.00 3.32
4761 6112 1.453524 GTGCATAGACGACGATGATGC 59.546 52.381 18.81 18.81 42.57 3.91
4782 6133 1.686052 TGAATGAGCCAACCACAAACC 59.314 47.619 0.00 0.00 0.00 3.27
4791 6142 6.490381 AGAGTACTCGTATATGAATGAGCCAA 59.510 38.462 17.07 0.00 36.18 4.52
4806 6157 1.206610 TCGCCTCTGTAGAGTACTCGT 59.793 52.381 17.07 8.42 40.48 4.18
4807 6158 1.937278 TCGCCTCTGTAGAGTACTCG 58.063 55.000 17.07 3.27 40.48 4.18
4810 6161 1.063764 CGGTTCGCCTCTGTAGAGTAC 59.936 57.143 8.02 0.00 40.48 2.73
4813 6164 0.099082 GTCGGTTCGCCTCTGTAGAG 59.901 60.000 1.86 1.86 41.71 2.43
4814 6165 0.607217 TGTCGGTTCGCCTCTGTAGA 60.607 55.000 0.00 0.00 34.30 2.59
4815 6166 0.179161 CTGTCGGTTCGCCTCTGTAG 60.179 60.000 0.00 0.00 34.30 2.74
4816 6167 0.892358 ACTGTCGGTTCGCCTCTGTA 60.892 55.000 0.00 0.00 34.30 2.74
4817 6168 0.892358 TACTGTCGGTTCGCCTCTGT 60.892 55.000 0.00 0.00 34.30 3.41
4818 6169 0.456312 GTACTGTCGGTTCGCCTCTG 60.456 60.000 0.00 0.00 34.30 3.35
4819 6170 0.892358 TGTACTGTCGGTTCGCCTCT 60.892 55.000 0.00 0.00 34.30 3.69
4820 6171 0.456312 CTGTACTGTCGGTTCGCCTC 60.456 60.000 0.00 0.00 34.30 4.70
4821 6172 1.585006 CTGTACTGTCGGTTCGCCT 59.415 57.895 0.00 0.00 34.30 5.52
4870 6269 4.062293 CGTCTGTTTAATGGAGGTTGACA 58.938 43.478 0.00 0.00 0.00 3.58
4898 6304 1.807742 TGGTAGCATAAAACACCGCAC 59.192 47.619 0.00 0.00 33.55 5.34
4902 6308 9.257651 CTATTACTAGTGGTAGCATAAAACACC 57.742 37.037 5.39 0.00 32.71 4.16
4911 6317 7.447545 CCACAGATACTATTACTAGTGGTAGCA 59.552 40.741 5.39 0.00 40.17 3.49
4912 6318 7.818642 CCACAGATACTATTACTAGTGGTAGC 58.181 42.308 5.39 6.48 40.17 3.58
4917 6323 7.013369 TGCTCACCACAGATACTATTACTAGTG 59.987 40.741 5.39 0.00 38.65 2.74
4936 6342 0.737219 CCTTATTGCTGCTGCTCACC 59.263 55.000 17.00 0.00 40.48 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.