>input_sequence_25733
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-------------------ATGGCGGCAATGCCGGGGCCGGCGAGGCTGGCCCTTGCCGTGCTGGCGCTCGCGTCGGTGC
TCCCGGCGTACCGCTCCGACGACCTCAACACCGACGCGCAGGCGCTGGAGGCGCTGCGCAAGGCGGTGGGGCGGTCGGCG
CTGCCGTCGTGGAACGGCAGCGCGCAGACGTGCCAGTGGCAGGGCGTGGCCTGCGAGAACGGCCGCGTCGTCGAGCTCCG
CCTCCCCGGCGCCGGGCTCATGGGCGCGCTCCCCTCGGGCGTGCTCGGCAACCTCACCGCGCTCCGCACGCTCTCCCTCC
GCTGGAACGCGCTCTCGGGGCCCATCCCCGACGACGTCGCCCGCATGACCGAGCTCCGCGCCATGTACTTCCAGCACAAC
GCCTTCTCCGGCGAGGTGCCCGCGGCGCTCTACACGCTCAGGAACCTGGTGCGCCTCAACATCGGCCAGAACAGGTTCTC
CGGCGAGATCTCCCCCGACTTCAACAAGCTCAACCGCCTCGGCTCGCTCATCCTCGACACCAACGACTTCTCCGGCGAGA
TCCCCAAGCTGGACCTGCCCACATTGGAGCAGTTCAACGTCTCCTACAACAAGCTCAACGGCTCCATCCCCCGCAAGCTC
CGCAAGATGCCCAGGGACTCCTTCCTCGGCACCGGCCTCTGCGGCGGCCCGCTCGGCCTCTGCCCCGGCGAGACCGCCGA
GACGCCCGCCGGGTCGCCGGAGGCCCAGCCGGGCGCGGGCGGCGGCGCGGCC---GACGTCGGTGGCGGCAAGAAGAAGA
AGAGGCTCTCCGGTGGCGCCATCGCCGGCATTGCCATCGCGTGCGTGCTCGGCCTGCTGCTGCTGCTCGCCCTGCTCTTC
TTCCTCTGCCGGAAGAAGAAGTCGAGCAGCGCGCCGAGGTCTTCTGCGGCGGCGGTGGAGAAGGGGCGGGACCTGGGCAT
GGGCCCGCTGGACGGGGAGCCCAAGGGGCAGAACGGCAACGGCGTCCACGGCGGCGCCGC------------AGCGGTGC
CGGCCGCCGCGGCCGCCGCAGCCGCCGTCGCCGCCAAGTCAGGAGGAGGAGGGTCGACGGCCGGGTCGAAGAAGCTGATC
TACTTCGGGCCGATGGCGGCGGCCCCGCCGTTCGACCTGGAGGACCTGCTGCGCGCGTCGGCGGAGGTGCTGGGCAAGGG
CGCGTTCGGCACGGCGTACAAGGCGGTGATGGAGAGCGGCGCGGCGGTGGCCGTGAAGCGGCTCAAGGACGTGGACCTCC
CCGAGCCGGAGTTCCGCGAGCGGATCGCGGCCATCGGCGCCGTGCAGCACGAGCTGGTGGTGCCCCTCCGCGCCTACTAC
TTCAGCAAGGACGAGAAGCTGCTCGTCTACGACTACATGTCCATGGGCAGCCTCTCCGCCCTCCTCCACGGTAAGAAAAA
-TCAAAAACTTTTTACAGTTTCCTCT-------------------------CGCCGGGCCGGTTCGTTATCGGCGCTGCC
GCCCTGTCGGTGGATGGAT----CCAAACAGGCTGGCGATATTCCGTCGCCGGCGTGAAAAAA-GTCCA------ACGCG
GTGGCGCGTCCCTTTCGCCGGATCCATTCCGTTT----CCCTTTTAACCGGTGT--------------------------
-----------------------CTGACCTACCCCGCCG-GTCCATGGCCCGGTTTGTTTATGTCCCCGCCATTGCCATG
CCCAAGGTGTACATTTCATGGACGTCCACATTTCATACGCCCGAACTGCAATTTGTACGCTAGTACATGC-------ACG
ACTACAGTAGTAGAGGCAGAGTTGTCGGGCTCAGCGTTTGCCAGCCGAGTTGCGTGGGATCT--------AATCCGCTAG
TTTAAGGCGGCCAGCAACGTGCCAGG---------CCTTGGCACGACCCGCCATTTGCGACCCACTTGCCTGGCTTAAGC
TCGTGGTCCATGGAGGCTCACCCCCTTTTGAAATCCAGTAACACTGTC-----------------CGATACTACAACTAT
GCGAGCACGTACATGGAGTTATTAGTTGCAG-----ATGAGTG-------------------AAATTTCCTTGGCAAGTT
GCGCGCGCATGTGAGCGGGGA----------G----GGCAGGGTGGTTGATGGACTTGATATGCGTCCATGTGACATTTA
GTTGGCGCCACTGCTCCCATCCTCGGGATTCCTCCCCCTCCCCGCGCCAATAATGGCCGGCGTACGTACGCACACACGC-
-AGATTTAAAAGCATCATTCGTGAGCCCGGACGGGGTAGATAAGAACACATGCCAT-----------GCACATGCACACG
CACACGAGACGTAAAACCAACGGAAGCCCAAAAGAAAAGAAAGAAACAACCGTGTTGCACCGTAACTAC-----------
------------GATGAGATG--------TGTGTTAATAATCTTCATGTATGTGGTGGTGTGCGTGCGTGCAGGGAACCG
GTCGTCGGGGCGGACGCCGCTGGACTGGGAGGCGCGGTCGGCGATCGCGCTGGCGACGGCGCGCGGGGTGGCGCACATCC
ACTCCACGGGGCCGACGGCGTCGCACGGCAACATCAAGTCCTCCAACGTGCTGCTCACCAAGAGCTACGAGGCCCGGGTG
TCGGACCACGGCCTGCCCACGCTCGTCGGCCCGTCATTCTCCCTGACCCGCGTCTCCGGCTACCGCGCGCCGGAGGTGAC
CGACATCCGGCGCGTCTCGCAGAAGGCCGACGTCTACAGCTTCGGCGTGCTGCTGCTGGAGCTGCTCACTGGCAAGGCGC
CCACCCACGCCGTGGCGAACGAGGAGGGCCTGGACCTGCCGCGCTGGGTGCAGTCCGTG---------------------
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---------------------------------------GTCCGGGAGGAGTGGACCGCCGAGGTGTTCGACCAGGAGCT
CCTCAGGTACCAGAGCGTGGAGGAGGAGATGGTGCAGCTGCTCCAGCTCGCCATCGACTGCTCCGCGCAGCACCCCGACC
GGCGGCCCAGCATGTCCGACGCCGCCGCCCGCATCGACGAGATCCGGCGCTCCGCCTCCTCCTCCTCCGCCGCCCAGCAC
GCGACGACCGCGGACGGCTCCCCCGCCGCCCCCGCCC------CCGAGGGCGACGACGAGCCGTCCCTATAA--------
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>chr4A_1_TraesCS4A01G064200
CCACGCCATCATCATCTGCTTGCCAGAGCTCGCCGCTCTTGTTCTCCCGGGCGGGAGGGCATCAGCAAGTTGGCCACCAT
TCTTCTCTCTGGAGTAGCAGCCGAGTCTCGAGCGTGATGATGCGGCTCGGCCGGCGAGTCCTTGACCGGAACCAGAAAGC
CTGCCAAGCGTGCGATCCTGAACCTGCCCGGTTAAATTTCCCCTTTTGACATTATTATCGTGAACCTGCCGGGTTTTACT
GCTGCGTTCTCAGGCAGGCACTGGGTGTGTACGTACGTACGTGTTGCCAAAAATTCAAGTTTGTGTACACCAGCAGAAGG
CCGTGCTGGTGCGCCTTGCCCGAGGAACTGGCCGATAAATGCCCGTGAACTGGATAACATGCCATGCTCGGGTACTTCCC
TCC-------CACTGCCCGAGTGTCGCACCTAGCAGCGCGGCAGTACCACTCACGAACCTTTTGCTCGTGGTCGGAAGCT
TGGGATTCACTCAACCCCAACCAGCAGCAT--------TCCGAAAGAATCTCCAGCGCGGTGGGCAGGAATTTC-CTCCC
GACGGAATTCCGGGTGAAAGCGATTTCCTAA--------------ACGATTTCCTAAACAATTCATCCATCATGGAAATA
TATTACTACTAGCACTGGAGCAGTAGTATTATTTTTCTCGTGTCTTTTGGCCCGGCGGGTGCTGGTCCCGCGTCCAGCCA
GCCTTTCGTTTCACCTGGCCTCAAAAGACTCCGCCACCGGGGTTAATC--------------------------------
---------------------------------------------------AATCCATGATTAAAGCAGCAATCAGGCCC
AT-CGCGCCAATCAGGCCCGCCGCTCCAGCTCCTCGCGCTAACCAAACCTTCCATTATAATTCAAGATTCCCCTGCCCCT
CCCCCTCCCCCTGCCCACTCTATTTCTACTACTGCCAGTACTACCTCCACAC--AGAGAGTGTCTCTGCTTTTCTCCTTC
TCCATGGCCATGCCAGTGCCCTCCTTGAGCTGACAGAGCAAC---AAGCCTCTCGCCGCCCCCCTTCCCCCGGTCTA---
-----------------CGATGGCGGCAATGCCGGGGCCGGCGAGGCTGGCCCTTGCCGTGCTGGCGCTCGCGTCGGTGC
TCCCGGCGTACCGCTCCGACGACCTCAACACCGACGCGCAGGCGCTGGAGGCGCTGCGCAAGGCGGTGGGGCGGTCGGCG
CTGCCGTCGTGGAACGGCAGCGCGCAGACGTGCCAGTGGCAGGGCGTGGCCTGCGAGAACGGCCGCGTCGTCGAGCTCCG
CCTCCCCGGCGCCGGGCTCATGGGCGCGCTCCCCTCGGGCGTGCTCGGCAACCTCACCGCGCTCCGCACGCTCTCCCTCC
GCTGGAACGCGCTCTCGGGGCCCATCCCCGACGACGTCGCCCGCATGACCGAGCTCCGCGCCATGTACTTCCAGCACAAC
GCCTTCTCCGGCGAGGTGCCCGCGGCGCTCTACACGCTCAGGAACCTGGTGCGCCTCAACATCGGCCAGAACAGGTTCTC
CGGCGAGATCTCCCCCGACTTCAACAAGCTCAACCGCCTCGGCTCGCTCATCCTCGACACCAACGACTTCTCCGGCGAGA
TCCCCAAGCTGGACCTGCCCACATTGGAGCAGTTCAACGTCTCCTACAACAAGCTCAACGGCTCCATCCCCCGCAAGCTC
CGCAAGATGCCCAGGGACTCCTTCCTCGGCACCGGCCTCTGCGGCGGCCCGCTCGGCCTCTGCCCCGGCGAGACCGCCGA
GACGCCCGCCGGGTCGCCGGAGGCCCAGCCGGGCGCGGGCGGCGGCGCGGCC---GACGTCGGTGGCGGCAAGAAGAAGA
AGAGGCTCTCCGGTGGCGCCATCGCCGGCATTGCCATCGCGTGCGTGCTCGGCCTGCTGCTGCTGCTCGCCCTGCTCTTC
TTCCTCTGCCGGAAGAAGAAGTCGAGCAGCGCGCCGAGGTCTTCTGCGGCGGCGGTGGAGAAGGGGCGGGACCTGGGCAT
GGGCCCGCTGGACGGGGAGCCCAAGGGGCAGAACGGCAACGGCGTCCACGGCGGCGCCGC------------AGCGGTGC
CGGCCGCCGCGGCCGCCGCAGCCGCCGTCGCCGCCAAGTCAGGAGGAGGAGGGTCGACGGCCGGGTCGAAGAAGCTGATC
TACTTCGGGCCGATGGCGGCGGCCCCGCCGTTCGACCTGGAGGACCTGCTGCGCGCGTCGGCGGAGGTGCTGGGCAAGGG
CGCGTTCGGCACGGCGTACAAGGCGGTGATGGAGAGCGGCGCGGCGGTGGCCGTGAAGCGGCTCAAGGACGTGGACCTCC
CCGAGCCGGAGTTCCGCGAGCGGATCGCGGCCATCGGCGCCGTGCAGCACGAGCTGGTGGTGCCCCTCCGCGCCTACTAC
TTCAGCAAGGACGAGAAGCTGCTCGTCTACGACTACATGTCCATGGGCAGCCTCTCCGCCCTCCTCCACGGTAAGAAAAA
-TCAAAAACTTTTTACAGTTTCCTCT-------------------------CGCCGGGCCGGTTCGTTATCGGCGCTGCC
GCCCTGTCGGTGGATGGAT----CCAAACAGGCTGGCGATATTCCGTCGCCGGCGTGAAAAAA-GTCCA------ACGCG
GTGGCGCGTCCCTTTCGCCGGATCCATTCCGTTT----CCCTTTTAACCGGTGT--------------------------
-----------------------CTGACCTACCCCGCCG-GTCCATGGCCCGGTTTGTTTATGTCCCCGCCATTGCCATG
CCCAAGGTGTACATTTCATGGACGTCCACATTTCATACGCCCGAACTGCAATTTGTACGCTAGTACATGC-------ACG
ACTACAGTAGTAGAGGCAGAGTTGTCGGGCTCAGCGTTTGCCAGCCGAGTTGCGTGGGATCT--------AATCCGCTAG
TTTAAGGCGGCCAGCAACGTGCCAGG---------CCTTGGCACGACCCGCCATTTGCGACCCACTTGCCTGGCTTAAGC
TCGTGGTCCATGGAGGCTCACCCCCTTTTGAAATCCAGTAACACTGTC-----------------CGATACTACAACTAT
GCGAGCACGTACATGGAGTTATTAGTTGCAG-----ATGAGTG-------------------AAATTTCCTTGGCAAGTT
GCGCGCGCATGTGAGCGGGGA----------G----GGCAGGGTGGTTGATGGACTTGATATGCGTCCATGTGACATTTA
GTTGGCGCCACTGCTCCCATCCTCGGGATTCCTCCCCCTCCCCGCGCCAATAATGGCCGGCGTACGTACGCACACACGC-
-AGATTTAAAAGCATCATTCGTGAGCCCGGACGGGGTAGATAAGAACACATGCCAT-----------GCACATGCACACG
CACACGAGACGTAAAACCAACGGAAGCCCAAAAGAAAAGAAAGAAACAACCGTGTTGCACCGTAACTAC-----------
------------GATGAGATG--------TGTGTTAATAATCTTCATGTATGTGGTGGTGTGCGTGCGTGCAGGGAACCG
GTCGTCGGGGCGGACGCCGCTGGACTGGGAGGCGCGGTCGGCGATCGCGCTGGCGACGGCGCGCGGGGTGGCGCACATCC
ACTCCACGGGGCCGACGGCGTCGCACGGCAACATCAAGTCCTCCAACGTGCTGCTCACCAAGAGCTACGAGGCCCGGGTG
TCGGACCACGGCCTGCCCACGCTCGTCGGCCCGTCATTCTCCCTGACCCGCGTCTCCGGCTACCGCGCGCCGGAGGTGAC
CGACATCCGGCGCGTCTCGCAGAAGGCCGACGTCTACAGCTTCGGCGTGCTGCTGCTGGAGCTGCTCACTGGCAAGGCGC
CCACCCACGCCGTGGCGAACGAGGAGGGCCTGGACCTGCCGCGCTGGGTGCAGTCCGTG---------------------
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---------------------------------------GTCCGGGAGGAGTGGACCGCCGAGGTGTTCGACCAGGAGCT
CCTCAGGTACCAGAGCGTGGAGGAGGAGATGGTGCAGCTGCTCCAGCTCGCCATCGACTGCTCCGCGCAGCACCCCGACC
GGCGGCCCAGCATGTCCGACGCCGCCGCCCGCATCGACGAGATCCGGCGCTCCGCCTCCTCCTCCTCCGCCGCCCAGCAC
GCGACGACCGCGGACGGCTCCCCCGCCGCCCCCGCCC------CCGAGGGCGACGACGAGCCGTCCCTATAACCGACCGG
CATTGATCGATCCCCGTTCGTCCTCCACCGCGAACGGAAATTCATCAGTTGGAAGAAAGGAAATTGCTTAGTTCTTTGCA
TGGATCGCGTCTCTGCTCATCAGCAACTTGTGCATGTCTTCATTTTTTGTTTCTTTCATCTTCTTCTCCTGTTCGGCCCC
TCTTTTTCTTCTTCTTCTTTTCTCTCACGGGCTTTGATTCTGTTCTATAGCACATGTCGGTCGGAACACTACTGTAAGCG
TTTGATTCTTGGAAAGTAACACATGGACGATGCCTGTACTGTACTATACCTAAGGACGACGATCCCACGGATGTCATGCC
ACCGTTGCCACCAGCTGTTGTGATGCTTGCTTAC--------TTAAAACACCCGGTGATTTGCTCGCGGTAGCTAGGCTT
TCGCTGCCGACGCTTTGCTTTGCCTGCCT------------------CCCTCGCTCACTTTCACCTCGTCTAATCGGCCG
ATCTCGGTTGTTAATGGTGGTTGGGCTGCCCATTTTCCTGCCGTGATGAGCCTCCTTTTGCCCGTCGCTCGCCGCCCGAT
CGATGGCTCCGCCTGTGGCGTCTAGCGCTCGGCCTGTGAGTGAACGGACGAAACCCGGCTACGGCTACGGCTACTGGTCT
TGGTGTGGTGTGGTGTGGTAGGTCGGAGGAGACATCCCTCTTTCTTTATCGGAGAGTGCTTTCGAAGTCACACGGCCACG
GAGAGGGACTCGAG----------GGTCATGTACGTAGCGTTGCGTTTATACGTGTGCAGTTCCATGACGCTGACGGGGT
CGTCAAACTCGGCGAGCAGTGCGACAACAAGGCATCATCGTCGTCTATGCACGGTTTGTGGTTGGCTCATTCATATACGA
GTACTCTACAGA--------------------------------------GGCGAACCGACAGTACAG----------GC
GTGTCAAACCAGCTGGAATACCATGCCGTGTCAACCTCCAT-------TAAACAGACGCAATTGTGCGGTGTTTTATGCT
ACCACTAGTAATAGTATCTGTGGTGAGCAGCAGCAATAAGGTC
>chr4B_1
CCACACCATCATCAT----TTGCCAGAGCTCGTCGCTCTTGTTCTCCCGGGAGACTGGC-----------TGGCCACAAT
TCTTTTCTCTTGACGAGTAGCCGAGTCTCGAGCGTGATGATGCAGCTCATCCCGCGAGTCCTTGACCGGAACCA-AAAGC
CTGTGAAGCGTGCGATCCTGAAGCTGCCCAGTTAAATTTGCCTTTTCACATAAC----CGTGAACCTGCCGAGTTTTACC
GCTGCGTCTTCAGGCA----CCGG--------GTACGTACGTGTTGCCAAAAATTCAAGTTTATGTACACCAACACAAGG
CCGTGCTCGTGTGCCTTGCCCGGGGAACTGGCCGATAAATGCCCGTGAACTGGATAACATGCGATGCTCGGGTACTACCA
CTGGCACTTGCACTGGCCGAGTGCCGCACCTAGCAGC--------------------CCTTTTGCTCGTGGTTGGAAGCT
TGGAATTCACTCAACCCCAAGCACAGCAGCATTCCAACTCCAAAAGAATCTCCAGCGCGGTGGGTAGGAATTTCTCTCCC
GATGGAATTCCGGGTGAAAGCGAGCGCGGTTCACCCGTCTAGCTCGTGATTTCCTAAACAAT----CCATCATGGAAATA
TATAT-TATTAGCACT---GCAGCAGTATTATTTTTCTCGTGTCTTTTGCCCCGGCTGG------TCCCGCGC----CCA
GCCTTTCATTTCATCGGGCCTCAAAAGACTCCACCTGCTAATCTGCCTTT-TCCCCTCTGAGCGAGCTTTGGATTAGAAA
AAGAGGAAAGCGGGAATTCTCCAACTAGGCTCCAGTAAGCGCCACCGGGTTAATCTATCATTAAAGCA---ATCAAGCCC
AT-TGCGCCAATCAGGCCCGCCGCTCCAGCTCCTTGGGCTAACCAAACCTTCCATTATAATTCAAGATTCCCCTGCCCCT
GCCTC-------GCCCACTCTATTTCTACTACTGCCAGTACTACCACCACACAGAGAGTGTGTCTGTGCTTTTCTTCTTC
TCCATGGCCATGGCAGTGCTCTCCTTGAGCTGACAGAGCAAGAAGAAGACTCTCGCCGCCCACCGTCCTCCCGCTCTCTC
TCACCCCGCGCCGCCGGCGATGGCGGCAATGCCGGGGCCGGCGAGGCTGGCCCTTGCGGTGCTGGTGCTCGCGTCGGTGC
TCCCGGCCTACCGCTCCGACGACCTCAACACCGACGCGCAGGCGCTGGAGGCGCTGCGCAAGGCGGTGGGCCGGTCCGCG
CTGCCGGCGTGGAACAGCAGCACCCAGACGTGCCAGTGGCAGGGCGTGGCCTGCGAGAACGGCCGCGTCGTCGAGCTCCG
CCTCCCCGGCGCCGGGCTCATGGGCGCGCTCCCCTCGGGCGTGCTCGGCAACCTCACCGCGCTCCGCACGCTCTCCCTCC
GCTGGAACGCGCTCACGGGCCCCATCCCCGACGACGTCTCCCGCATGACCGAGCTCCGGGCCATGTACTTCCAGCACAAC
GCCTTCTCCGGCGAGGTGCCCGCGGCGCTCTACGCGCTGAAGAACCTGGTGCGGCTCAACATCGGGCAGAACAAGTTCTC
GGGCGAGATCTCGCCCGACTTCAACAAGCTCAACCGCCTCGGCTCGCTCATCCTCGACAGCAACGACTTCTCCGGCGAGA
TCCCCAAGCTGGACCTGCCCACATTGGAGCAGTTCAACGTCTCCTACAACAAGCTCAACGGCTCCATCCCCCGCAAGCTC
CGGAAGATGCCCAAGGACTCCTTCCTCGGCACCGGGCTCTGCGGCGGCCCGCTCGGCCTGTGCCCCGGCGAGACCGCGGA
CACGCCGGCCGGATCGCCGGAGGGCCAGCCAGGCGC---CGGCGGCGCGGCC---GACGTCGGTGGCGGCAAGAAGAAGA
AGAAGCTCTCCGGCGGCGCCATCGCCGGCATTGCCATCGCGTGCGTGTTCGGCCTGCTGCTGCTGCTCGCCCTGATCTTT
TTCCTCTGCCGGAAGAAGAAGTCCGGCAGCGCGCCGAGGTCTTCTACGGCGGCGGTGGAGAAGGGGCGGGACCTGGGCAT
GGGCCCGCTGGACGGGGAGCCCAAGGGGCAGAACGGCAACGGCGTCCACGGCG---CCGGGGCCGCCGCTGGAGCAGTGC
CGGCCGCCGCG---GCCGCAGCTGCCGTCGCCGCCAAGTCAGGAGGAGG---GTCGACCACGGGCTCGAAGAAGCTGATC
TACTTCGGGCCGATGGCGGCGGCCCCGCCGTTCGACCTGGAGGACCTGCTGCGCGCGTCGGCGGAGGTGCTGGGCAAGGG
CGCGTTCGGGACGGCGTACAAGGCGGTGATGGAGAGCGGCGCGGCGGTGGCCGTGAAGCGGCTCAAGGACGTGGACCTCC
CCGAGCCGGAGTTCCGCGAGCGGATCGCGGCCATCGGCGCCGTGCAGCACGAGCTGGTGGTTCCCCTCCGCGCCTACTAC
TTCAGCAAGGACGAGAAGCTGCTCGTCTACGACTACATGTCCATGGGCAGCCTCTCCGCCCTCCTCCACGGTAACAAAAA
-TAAAAACCTTCTCTTTCACCGTACAGTCCGAGTAACTTTTTACAGGTTCGCGCCGGGCCGGATCGTTATCGCCGCTGCC
GTCCTGTCGGT----GGAT----CCAAACAGGCTGGCGATATTCCGTCGCCGGCGTGAAAAAAAGTCCA------ACGCG
GTGGCGCGTCGCTTTCGCCCGATCCATTCCGTTTGAGACCCTTTTTACCAGTGCTCCCTCGGACACCGATCAATTTGCTC
GCTCACATCACGG----CCACGCCTGACCTACCCCGCCGCGTCCCTGGCCCGGTTTCTTTATGGCTCTGCCATTGCCAAG
GTGT-----------------------ACATTTCATACGCTGGAACTGCAATTTGTACGCTAGCATGTAGGAGTACTACG
ACTACAGTAGTAGAC------TTGTCGGGTTCAGCG-TTGCCAGCCGAGTTGCGTGGGGTCTAATCCACTAATCCACTAG
TTTAAGGCAGCCAACAACGTGACAGCCATGACTGCCCTTGGCACGACCCGCCATTTGCGACCAACTTGCCTAGCTTAAGC
TCGTGGTCCATGGAGGCTCTCG---TTTTGAAATCCACTAGTACTGTC-----------------CGA---TACGACTAT
GCGAGCACGTACATGGAGTTATTAGTTGCAG-----ATTGATTCCTGGTAGTACGAGTAGTAAAATTTCCTTGGCAAGTT
GCGCGCGCATGTGAGCGGGGAAGGCGTCCCGGGGCTGGCAGGGTGGTTGATGAACTTGATATGCGTCCATGTGACATTTA
GTTGGCGCCACTGCTCCGATCCTCGGGATTCCTCCC-CTCCCCGCGCCAATAATGGCTGGCGTACGTACACAGAGAGAAA
GAGATTTAAAAGGATCATTCATGAGCCCGGACGGGGTAGATAAGAACACATGGGTGGCATCCGCATGGCACATGCACATG
AA------ACGTAAAACCAACGGAAGCCA-----AAAAGAAAGAAACAACCGTGTTGCACCGTGGACGCGG---------
-----TAACTGTGATGAGATG--------TGTGTTAATAATCTTCATGTGATT----GTGGT-GTGCGTGCAGGGAACCG
GTCGTCGGGGCGGACGCCGCTGGACTGGGAGGCGCGGTCGGCGATCGCGCTATCGACGGCGCGCGGCGTGGCGCACATCC
ACTCCACGGGCCCGACGGCGTCGCACGGCAACATCAAGTCCTCCAACGTCCTGCTCACCAAGAGCTACGAGGCCCGGGTG
TCGGACCACGGCCTGCCCACGCTCGTCGGCCCCTCCTTCTCCCCGACCCGGGTGTCCGGCTACCGCGCCCCGGAGGTGAC
CGACATCCGGCGCGTGTCGCAGAAGGCCGACGTCTACAGCTTCGGCGTGCTGCTGCTGGAGCTGCTCACCGGCAAGGCGC
CCACGCACGCCGTGGTCAACGAGGAGGGCCTCGACCTGCCGCGCTGGGTGCAGTCCGTCGTCCGCAGTGGCGTAGCTAGG
ATTTTATCTCAGGGTGGTCCAATTGACAGGAAAAAAAATTGCTCCACAAATTCAACTAAACCAGCATATGCACACAGAAT
ATATCAATAAGGTCTTCATCACAATAATAAAATTCATGGTTAAGTCTTAAATTCGCGTAAAAGAAGATTCACACCTTATA
TGTCGGGATAACGCCTTCTCACCATGAAAGTATCAATTATATCATCTTCATTCACTTTGGAGAAAGCATCTCGCCTGATG
TATATAACGCAATCAAAAGAGATACTATGTCTCCAGTCCTCTTCATTTTGCAAAAATTCTACACAAACATTAATTTATTA
TCTATCAACTGGATCAAATCCCTAATGATAAGTCAGTTCTATACTTCTATTTATCAATTATCAATTGCCAAAAGTAAAAC
TATATCTTGCACTCTCAGATCTCAGCTTAACTTGTTCAAATCTTCATAGCAAAAGAAATTTACACTTTGAATTTATGAAT
AAGGAGAACAAAATATCTTACTTTTGATTGGAGTAGTAGGATGAAAAACTGAACAAGTGGTGCTCAACCTAATGCTTCAC
CGACAGCCTGTTTGCCGCCGCAGGCAAGTGTCCTTCGCCCGGCCACCGGTTCGGCACGTCGATTAGTGCCCTGTCGGCCG
GTGGATGCGCAGTGGGAGTGCGGGGCGATGGCGGATGGCGCTCGCTGCTAGGGTTCCAGAACTGCAAGAGGAGACGGGAA
TCAGGAACGTCTTCTGGTGTCGATCAATCAGCGCATACACGCGTTCGCGGAGACTAACGAGCCAACCTTCACGTATACAT
GGGCTGAGTTGGGCTTGCTTTCTTCTTTTTCTTTTTGATAGACTAGTAGTATATTAATGGGCTGAATTCCAGGGTGGTCC
ATGGACCACCCAGGCCACCCTACAGCTACGCCACTGGTCGTCCGGGAGGAGTGGACCGCCGAGGTGTTCGACCAAGAGCT
CCTGAGGTACCAGAACGTGGAGGAGGAGATGGTGCAGCTGCTCCAGCTCGCCATCGACTGCTCCGCGCAGCACCCCGACC
GGAGGCCCAACATGTCCGACGCCGCCGCCCGCATCGACGAGATCCGGCGCTCCGCCTCCTCC---------GCCCAGCAC
GCGACGACGGACGG------CGCCCCCGCCCCCGCCCCCGCCCCCGAGGGCGACGA---GCCTTCCCTATAACCGACCGG
CGTTGATCGATCCCCGTT------------CGAACGGAAATTCATCAGTTGGAAAAAAGGAAATTGCTTAGTTCTTTGCA
TGGATCTTATCTTTGCTCATCAGCAACTTGTGCATGTCTTCATATTTTCTTCTTCTT---TTCTTCTCCTTTTTGGCCCC
TTTTC-------------TTTTTCTCACGGGCTTTGATTCTGTTCTATAGCACATGTCAGTC-----ACTACTGTAAGCG
TTTGATTCTTGGAAAGTAACACATGGATGATGC-----CTGTACTGTACCTAAGGACGATCCCACGG--------ATGCC
ACCATTGCCACCAGCTGTTGTAATGCTTGCTTGCTTGCTTATTTAAAACACCGAGTGATTTGCTCGCGGTAGCTAGGCTT
TCGCTGCCAGTGCTTTGCTTTGCTTGCCTGTGCATGCCAGCTCCCGACCCTCCCTCACTTTCACCTCGTCTAATCGGCCG
ATCTCGGTTGTTAATGGTTGTTGGGCTGCCCATTTTCCTACCGTGATGAGCCTCCTTTTGCCTGTCACTCCGCCGC---T
CGATGGCTCCACCTGTGGCGTCTAGCACTCGGCCTGTGAGTGAATGGACGAAACCCGGCTACGGCTACGGCTACTGGTCT
----------TGGTGTGGTAGGTCGGAAGAGACATC--------------GGAGAGTGCTTTCGAAGTAACACGGCGACG
GAGAGAGACCCATCCCGTCCCAGAGGTCATGTACGTAGCGTTGCGTTTATACGTGTGCAGTTCGATGATGCTGACGGGGT
TGTCAAACTCGGCGAG-AGTGCGGCAACAAGACATCATCGTCGTCTATGCACCGTTTGTGGCTGGCTCATTCATATCGGA
TTATCGCCTGTCTGCAACTGCAACCCGGTTTTGTATGGGTACCATACGCCGGCGAACCGACAGTACAGACCAGCCGTCGC
GTGTCAAACCAGCTGGAATACCATGCCGCGTCAACCTCCATGTAGTAATAAACAGACGCAATTATGCAGTGTCTTAGT--
---ACTAGTAATAGTATCTGTAGTGAGCAGCAGCAATAAG---
>chr4D_99
--------------------------------------------------------------------------------
------------------AGCCGAGTCTCGAGCGTGATGATGCAGCTCAGCCGGCGAGTCCTTGACCGGAACCA-AAAGC
CTGTCAAGCGTGCGATCCTGAACCTGCCCAGTTAAATTTGCCTTTTCACACAAC----CGTGAACCTGCCGAGTTTTACT
GCTGCGTTATCAGGCA----CTGGGTGGGTACGTACGTACGTGTTGCCCAAAATTCAAGATTATGTACACCAACACAAGA
CCGTGCTCGTGTGCCTTGCCCGGGGAACTGGCCGATAAATGCCCGTGAACTGGATAACATGCGATGCTCGGGTACTACCA
CCGGCACTTGCACTGCCCGAGTGGCCAGCAGTACTCGCA----------------AACCTTTTGCTCATGGTTGGAAGCT
TGGAATTCACTCAAC------------------------CCAAAAGAATCTCCAGCGCGGTGGGTAGGAATTTCTCCCA-
-ATGGAATTCCGGGTGAAAGCGAGCGCGGTTCATCTGTCTAGCTCACGATTTCCTAAACAAT----CCATCATGGAAATA
TATTACTATTAGCACT---GCAGCAGTATTATTTTTCTCGTGTCTTTTGCCCCGGCTGGTGCTGGTCCCGCGT----CCA
GCCTTTCATCTCATCGGGCCTCAAAAGACTCCACCTGCTAATCTGCCTTTCTCCCCTCGGAGCGAGCTTTGGATTAGAAA
AAGAGGAAAGCGGGAATTCTCCAACTAGGCTCCAGTAAGCGCCACCGGGTTAATCTATCATTAAAGCA---ATCAAGCCC
ATTTGCGCCAATCAGGCCCGCCGCTCCAGCTCCTTGGCCTAACCAAACCTTCCATTATAATTCAAGATTCCCCTGCCCCT
GCCCCTGCCCCTGCCCACTCTATTTCTACTGCTGCCAGTACTACCACCACAC--AGAGAGAGTGTCCG----------TC
TCCATGGCCATGCCAGTGCCCTCCTTGAGCTGACAGAGC---AAGAAGCCTCTCGCCGCCCACCTCCCTCCCGCCCTCTC
TCACCCCGCGCCGCCGGCGATGGCGGCAATGCCGGGGC---------TGGCACTTGCGGTGCTGGTCCTTGTGTCGGTGC
TCCCGGCGTACCGCTCCGACGACCTCAACACGGACGCGCAGGCGCTGGAGGCGCTGCGCAAGGCGGTGGGCCGGTCCGCG
CTGCCGGCGTGGAACAGCAGCACGCAGACGTGCCAGTGGCAGGGCGTGGCCTGCGAGAACGGCCGCGTCGTCGAGCTCCG
GCTCCCCGGCGCCGGGCTCATGGGCGCGCTCCCCTCGGGCGTGCTCGGCAACCTCACCGCGCTCCGCACGCTCTCCCTCC
GCTGGAACGCGCTCACGGGGCCCATCCCCGACGACGTCGCCCGCATGACCGAGCTCCGGGCCATGTACTTCCAGCACAAC
GCCTTCTCCGGCGAGGTCCCCGCGGGGCTCTTCACGCTCAAGAACCTGGTGCGGCTCAACATCGGGCAGAACAAGTTCTC
CGGCGAGATCTCGCCCGACTTCAACAAGCTCAACCGCCTCGGCTCGCTCATCCTCGACAGCAACGACTTCTCCGGCGAGA
TCCCCAAGCTGGACCTGCCCACATTGGAGCAGTTCAACGTCTCCTACAACAAGCTCAACGGCTCCATCCCCCGCAAGCTC
CGCAAGATGCCCAAGGACTCCTTCCTCGGCACCGGGCTCTGCGGCGGTCCGCTCGGCCTGTGCCCCGGCGAGACCGCGGA
GACGCCGGCCGGGTCGCCGGAGGGCCAGCCAGGCGC---CGGCGGCGCCGCCGCTGACGTCGGTGGCGGCAAGAAGAAGA
AGAAGCTCTCCGGCGGCGCCATCGCCGGCATTGCCATCGCGTGCGTGCTCGGCCTGCTGCTGCTGCTCGCCCTGCTCTTC
TTCCTCTGCCGGAAGAAGAAGTCCAGCAGCGCGCCGAGGTCTTCTACGGCGGCGGTGGAGAAGGGGCGGGACCTGGGCAT
GGGCCCGCTGGACGCGGAGCCCAAGGGGCAGAACGGCAACGGCGTCCACGGCG---CCGC------------AGCGGTGC
CGGCCGCCGCGGCCGCAGCTGCCGCCGTCGCCGCCAAGTCAGGAGGAGGAGGGTCGACCGCGGGGTCGAAGAAGCTGATC
TACTTCGGGCCGATGGCGGCGGCCCCGCCGTTCGACCTGGAGGACCTGCTGCGCGCGTCGGCGGAGGTGCTGGGCAAGGG
CGCGTTCGGCACGGCGTACAAGGCGGTGATGGAGAGCGGCGCGGCGGTGGCCGTGAAGCGGCTCAAGGACGTGGACCTCC
CCGAGCCGGAGTTCCGCGAGCGCATCGCGGCCATCGGCGCCGTGCAGCACGAGCTGGTGGTGCCCCTCCGCGCCTACTAC
TTCAGCAAGGACGAGAAGCTGCTCGTCTACGACTACATGTCCATGGGCAGCCTCTCCGCCCTCCTCCACGGTAACAAAAA
ATAAAAACCTTCTCTTTCACAGTACG------GTAACTTTTTACAGGCTCGCGCCGGGCCGGTTCGTTATCGGCGCTGCC
GCCCTGTCGGT----GGATCGATCCAAACAGGCTGGCGATATTCCGTCGCCGGCGTGAAAAAA-GTCCAACGCGGACGCG
GTGGCGCGTCGCTTTCGCCCGATCCATTCCGTTTGAGACCCTTTTAACCAGTGCTCCCTCGGGCAC-GATCAATTCGCTG
GCTCGCATCACGGCCACCCACGCCTGACCTACCCCGCCGCATCCATGGCCCGGTTTCTTTATGGCCCTGCCATTGCCAAG
GTGT-----------------------ACATTTCATACGCTCGAACTGCAATTTGTACGCTAGTAAT-----GTACTACG
ACTACAGTAGTAGAG------TTGTCGGGCTCAGCGTTTGCCAGCTGAGTTGCGTGGGGTCT--------AATCCACTAG
TTTAAGGCAGCCAACAACGTGACAGCCATGACTGCCCTTGGCACGACCCGCCATTTGCGACCAACTTGCCCTGTTCTGAG
GCGAC-------------CTAG---TTTTGAAATCTTGGATGCCATACTGTGCTAGCGTAGTGTACGA---TACAACTAT
GCGAGCACGTACATGGAGTTATTAGTTGCAGATTGGATTGATTCCTGGTAGTAGT-------AAAATTTCTTGGCAAGTT
GCGTGCGCATGTGAGCAGGGAAGGCGTCCCGG----GGCAGGGTGGTTGATGAACTTGATATGCGTCCATGTGACATTTA
GTTGGCGCCACTGCTCCGGTCCTCGGGATTCCTCCCCCTCCCCGCGCCAATAATGGCTGGCGTACGTAAACACACACGGA
GAGATTTAAAAGGATCATTCGTGAGCCCGGACGGGGTAGATAAGAACACATGCCAT-----------GCACATGCACATG
AA------ACGTAAAACCAACGGAAGCCA-----AAAGGAAAGAAACAACCGTGTTGCACCGTGCACGCACGCCAGCGCG
GTAACTAACTGTGATGAGATATGTACTACTGTGTTAACAATCTTCATGTGATC----GTGTGCATGCGTGCAGGGAACCG
GTCGTCGGGGCGGACGCCGCTGGACTGGGAGGCGCGGTCGGCGATCGCGCTATCGACGGCGCGCGGGGTGGCGCACATCC
ACTCCACGGGCCCGACGGCGTCGCACGGCAACATCAAGTCCTCCAACGTGCTGCTCACCAAGAGCTACGAGGCCCGGGTG
TCGGACCACGGCCTGCCCACGCTCGTCGGCCCGTCCTTCTCCCCCACCCGGGTGTCCGGCTACCGCGCCCCGGAGGTGAC
CGACATCCGGCGCGTCTCGCAGAAGGCCGACGTCTACAGCTTCGGCGTGCTGCTGCTGGAGCTGCTCACGGGCAAGGCGC
CCACCCACGCCGTGGTGAACGAGGAGGGCCTGGACCTGCCCCGGTGGGTGCAGTC-------------------------
--------------------------------------------------------------------------------
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-----------------------------------GGTCGTCCGGGAGGAGTGGACCGCCGAGGTGTTCGACCAGGAGCT
CCTCAGGTACCAGAACGTGGAGGAGGAGATGGTGCAGCTGCTCCAGCTCGCCATCGACTGCTCCGCGCAGCACCCCGACC
GGAGGCCCAGCATGTCCGACGCCGCCGCGCGCATCGACGAGATCCGGCGCTCCGCCTCCTCCC------CCGCCCAGCAC
GCGACGACGGACAG------CCCCGCCGCCCCCGCCC------CCGAGGGCGACGA---GCCCTCCCTATAACCGACCGG
CATTGATCCC------------------------------TTCATCAGTTGGAAGAAAGGAAATTGCTTAGTTCTTTGCA
TGGATCTTGTCTTTGCTCATCAGCAACTTGTGCATGTCTTCATTTTTT----CTTTCATCTTCTTCTCCTTTTTGGCCCC
TTTTTT----------CTTTTTTCTCACGGGCTTTGATTCTGTTCTATAGCACATGTCAGTC-----ACTACTGTAAGCG
TTTGATTCTTGGAAAGTAACACATGGATGATGC-----CTGTACTGTAC-------------------------------
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-------------------------------------------
>SNPs
----S----------SSSS-------------S------------------S-SSS--SSSSSSSSSSSS-------S--
----S-----S--SS--S-------------------------S----S-------------------------S-----
---S-------------------------S---------S--S---SSSSSSSSSSSS-------------S--------
--------S-------SSSS-------S----------------------------------S---------S--S----
-------S---S----------S---------------------------------------S-------------S--S
S-S--------------------S-------------SSSSSSSSSSSSSSSSSS-----------------S-------
---S----------------S--SSSSSSS-----------S----------------------S---------------
--S--------------------SSS-SSSS-------------------------------SSSS--------------
--------S-------SSS----S-------------------------S------S----------------SSSS---
-------S-----S-S----------------S--SS-SSSSS-SSSS--------------------------------
-------------------------------------------------------S--S---------SSS----S----
---S------------------------------S-S-------------------------------------------
S-----S--------------------------------------S-----------------------------S----
-----------------------------------------S-------------------S------S--S-S-SS---
---------------------------------------------------------S-------S--------------
----------------------------------------------------------------------S-----S---
------S--------S-----S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-------------------------------------------S---------------------
----------------------------------------S------------S-----------S-------S------
------------S----------------------------------------------S--------------------
--------------------------------------------------------------------------------
-------------S---------------------S-----------------------S-----------------S--
------S----------------S------S-----SSS-----------------------------------------
---S---------S------------------------------------------------------------------
-----------------------S---------------------S----------------------------------
-----------------------------------------------------SSS------------------------
----------------------------------------------------------S--S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--S----S---S-SSSSSSSSSSS-S------------------------------------------------------
-----------SSSS-----------------------------------------------------------------
----------S--------S-----------------------------S---S--------------------------
--------------------------------------------------------S------S---S----------S-
SSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S------------------------SS-SS----------
---------------SSSSSS-------------------------------------S----------------S----
--------S----S-------S---S------------------------------------S--------S--------
-------------------S-SSSS---------------SS--------------------------SSS---------
--------------------------------------SSS-S-------------------------------------
----------------------------------------------------S---------------------------
-----------------S---------------------------------------S-----------S--------S-
------------S-----------------------------------------------------------------S-
S-SSSSSS--------------------SSSSSS-----------------------------SSSSS------------
-------------------------------------------------SSS-SSSS-----------------------
---------------------------------------------------SS---------------------------
----------S---------------------------------------------------------------------
-----------------------------------S-------S------S--S--------------S-----------
---------------------------------------------------------------------S----------
---------------S------------------------------------------S---------------------
--------------------------------------------------------------------------------
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--------------S-----------------------------------------------------------------
--S-----------------------------------------------------------SSSSSSS-----------
--------S-SS-SSSSSSS------------------------------------SSS---S-----------------
------------------SSSSSSSSSSSS--------------------------------------------------
------SS----S-----------------------------------S--S------------------S--S------
-S----SSSSSSSSSS-----S------------------------------------S---SSSSS-------------
---------------------------S-----SSSSS-------S-------------SSSSS-SSSSSSSSSS-----
---S-----------------S----------S-------------------SS--------------------------
--------SSS------------S----------------------------S---------------------------
------------------S--------------------S----------------------S---S---SS-SS-SSS-
----------S---------------S-----------------S-----------------------------------
SSSSSSSSSS-----------------S--------SSSSSSSSSSSSSS------------------S-------S---
-----S---S-SSS-------------------------------------------------S----S-----------
S---------------S------S-------S--------------------S--------S--------------SS--
S--SSSSSSSSS--------------------------------------------------------------------
----------------------------S----------------------------------S---S----S---SSSS
SSS------------------S------------------SSS
>forward_155
--------------------------------------------------------------------------------
-------------------------------------------------------GAGTCCTTGACCGGAACCAG-----
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>reverse_1613
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------------CCCCGACTTCAACAAGCTCA------------------------------------------------
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-------------------------------------------
>forward_734
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------CAGCCA
GCCTTTCGTTTCAC------------------------------------------------------------------
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-------------------------------------------
>reverse_2857
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--------------------------------------------------------GTTTATGTCCCCGCCATTGC----
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>forward_1934
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--------------------------------------------------------------------------AGAAGA
AGAGGCTCTCCGGT------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3112
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-----------------------------------------------------------------------GGCTTAAGC
TCGTGGTCCAT---------------------------------------------------------------------
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>forward_2891
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-----------------------------------------------------------------------ATTGCCATG
CCCAAGGTGTA---------------------------------------------------------------------
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>reverse_5925
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----GTGGTGTGGTGTGGTAGGTC--------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------
