Multiple sequence alignment - TraesCS4A01G054200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G054200 chr4A 100.000 3868 0 0 1 3868 45683751 45687618 0.000000e+00 7143.0
1 TraesCS4A01G054200 chr4A 87.387 111 3 1 1284 1394 531099824 531099725 2.440000e-22 117.0
2 TraesCS4A01G054200 chr4A 90.000 60 6 0 2331 2390 64138768 64138827 1.150000e-10 78.7
3 TraesCS4A01G054200 chr4B 94.215 2230 65 16 1 2187 517163836 517161628 0.000000e+00 3345.0
4 TraesCS4A01G054200 chr4B 95.276 868 23 4 2390 3239 517161557 517160690 0.000000e+00 1360.0
5 TraesCS4A01G054200 chr4B 88.582 797 56 21 3086 3868 517160805 517160030 0.000000e+00 935.0
6 TraesCS4A01G054200 chr4B 98.276 58 1 0 2220 2277 517161631 517161574 6.840000e-18 102.0
7 TraesCS4A01G054200 chr5A 84.667 600 71 10 575 1157 13410817 13410222 2.590000e-161 579.0
8 TraesCS4A01G054200 chr5A 84.975 406 38 8 2472 2873 13409617 13409231 1.300000e-104 390.0
9 TraesCS4A01G054200 chr5A 82.192 73 3 7 3256 3328 13408831 13408769 2.000000e-03 54.7
10 TraesCS4A01G054200 chr5B 82.609 414 56 12 1454 1861 667677764 667677361 6.150000e-93 351.0
11 TraesCS4A01G054200 chr7A 90.179 112 11 0 1287 1398 466944397 466944508 3.110000e-31 147.0
12 TraesCS4A01G054200 chr7A 96.078 51 2 0 2340 2390 430771650 430771700 2.480000e-12 84.2
13 TraesCS4A01G054200 chr7A 88.235 68 6 1 2323 2390 67509625 67509690 3.200000e-11 80.5
14 TraesCS4A01G054200 chr3A 90.654 107 10 0 1289 1395 80090634 80090528 4.030000e-30 143.0
15 TraesCS4A01G054200 chr3A 86.087 115 5 2 1281 1395 566124874 566124977 3.160000e-21 113.0
16 TraesCS4A01G054200 chr3D 91.892 74 6 0 1325 1398 422752417 422752344 1.900000e-18 104.0
17 TraesCS4A01G054200 chr3D 100.000 34 0 0 3323 3356 417210975 417211008 3.230000e-06 63.9
18 TraesCS4A01G054200 chr3D 100.000 28 0 0 833 860 2341978 2341951 7.000000e-03 52.8
19 TraesCS4A01G054200 chr3B 84.615 104 15 1 1282 1384 740292356 740292253 6.840000e-18 102.0
20 TraesCS4A01G054200 chr3B 94.444 36 2 0 3321 3356 575300178 575300213 5.400000e-04 56.5
21 TraesCS4A01G054200 chr7B 85.577 104 4 1 1284 1387 380069943 380069851 8.840000e-17 99.0
22 TraesCS4A01G054200 chr7B 100.000 30 0 0 3323 3352 503889136 503889107 5.400000e-04 56.5
23 TraesCS4A01G054200 chr7B 100.000 30 0 0 3323 3352 503937218 503937189 5.400000e-04 56.5
24 TraesCS4A01G054200 chr7D 89.474 76 8 0 1323 1398 289262695 289262620 3.180000e-16 97.1
25 TraesCS4A01G054200 chr2B 98.077 52 1 0 2339 2390 73148357 73148408 1.480000e-14 91.6
26 TraesCS4A01G054200 chr2B 96.154 52 2 0 2339 2390 350306687 350306738 6.890000e-13 86.1
27 TraesCS4A01G054200 chr4D 98.000 50 1 0 2341 2390 47858138 47858089 1.910000e-13 87.9
28 TraesCS4A01G054200 chr6D 97.959 49 1 0 2342 2390 34582459 34582507 6.890000e-13 86.1
29 TraesCS4A01G054200 chr6A 96.154 52 2 0 2339 2390 137532490 137532439 6.890000e-13 86.1
30 TraesCS4A01G054200 chrUn 92.857 56 4 0 2335 2390 71312960 71312905 8.910000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G054200 chr4A 45683751 45687618 3867 False 7143.000000 7143 100.000000 1 3868 1 chr4A.!!$F1 3867
1 TraesCS4A01G054200 chr4B 517160030 517163836 3806 True 1435.500000 3345 94.087250 1 3868 4 chr4B.!!$R1 3867
2 TraesCS4A01G054200 chr5A 13408769 13410817 2048 True 341.233333 579 83.944667 575 3328 3 chr5A.!!$R1 2753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 2.945008 TCATGCTTTCGGGATTTGCTAG 59.055 45.455 0.00 0.0 0.00 3.42 F
1267 1273 2.625737 GCTGCTGCATCTAGAGAACAA 58.374 47.619 11.11 0.0 39.41 2.83 F
1596 1622 0.686112 GTGGAGGAGGTGAGGAGGAG 60.686 65.000 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1322 1328 0.582005 GGCGCCTTATCACTTAAGCG 59.418 55.0 22.15 0.0 38.90 4.68 R
2297 2357 0.608640 AACAGCTAGCTAACACGCCT 59.391 50.0 18.86 0.0 0.00 5.52 R
2938 3296 0.936297 CAGCAAGCAAGACGCCAAAC 60.936 55.0 0.00 0.0 44.04 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.708177 TCTAACATAGCAGAATCCTTGGC 58.292 43.478 0.00 0.00 0.00 4.52
69 70 5.762179 TCAACCCAGATAACACTCTCATT 57.238 39.130 0.00 0.00 0.00 2.57
83 84 6.974965 ACACTCTCATTTTCTTGTTTCATCC 58.025 36.000 0.00 0.00 0.00 3.51
187 188 8.939929 CAGTTTTCAGTAGCAGAAATATCTTCA 58.060 33.333 0.00 0.00 35.17 3.02
227 228 2.945008 TCATGCTTTCGGGATTTGCTAG 59.055 45.455 0.00 0.00 0.00 3.42
248 249 2.955660 GTGTTTCCAAGACCACCATGAA 59.044 45.455 0.00 0.00 0.00 2.57
294 295 4.516698 AGAGGTGTCATGCTTGTACTTTTG 59.483 41.667 0.00 0.00 0.00 2.44
320 321 4.002982 AGCTATGTGATTGCGTTTTCAGA 58.997 39.130 0.00 0.00 36.14 3.27
359 360 4.141756 TGTTTTACGGGTTGGACTTACTGA 60.142 41.667 0.00 0.00 0.00 3.41
416 417 5.783100 CAGCAAACTGTTGATTTGTTTGT 57.217 34.783 15.86 4.34 46.91 2.83
554 556 4.918810 AATCACAAGAGTTGTTTGGTCC 57.081 40.909 0.00 0.00 43.23 4.46
555 557 3.358111 TCACAAGAGTTGTTTGGTCCA 57.642 42.857 0.00 0.00 43.23 4.02
556 558 3.897239 TCACAAGAGTTGTTTGGTCCAT 58.103 40.909 0.00 0.00 43.23 3.41
557 559 3.882888 TCACAAGAGTTGTTTGGTCCATC 59.117 43.478 0.00 0.00 43.23 3.51
558 560 3.885297 CACAAGAGTTGTTTGGTCCATCT 59.115 43.478 0.00 0.00 43.23 2.90
559 561 4.023707 CACAAGAGTTGTTTGGTCCATCTC 60.024 45.833 0.00 0.00 43.23 2.75
561 563 4.713792 AGAGTTGTTTGGTCCATCTCTT 57.286 40.909 0.00 0.00 36.19 2.85
562 564 5.825593 AGAGTTGTTTGGTCCATCTCTTA 57.174 39.130 0.00 0.00 36.19 2.10
565 567 6.881602 AGAGTTGTTTGGTCCATCTCTTATTC 59.118 38.462 0.00 0.00 36.19 1.75
782 785 3.640029 TCGAGGTTTGTTCTCTACCTTGT 59.360 43.478 0.00 0.00 42.21 3.16
861 864 4.820716 AGGATCTTGCATATGAAGTCAAGC 59.179 41.667 6.97 0.00 36.71 4.01
966 969 5.406477 GCAAAAAGAGGATTGAATGACAACC 59.594 40.000 0.00 0.00 41.52 3.77
1074 1080 8.296000 CCGATGATAATGGTATGTTTGCATTTA 58.704 33.333 0.00 0.00 36.58 1.40
1150 1156 7.574779 GCATTATGTTCACACTTTGTATCACCA 60.575 37.037 0.00 0.00 0.00 4.17
1267 1273 2.625737 GCTGCTGCATCTAGAGAACAA 58.374 47.619 11.11 0.00 39.41 2.83
1270 1276 4.439968 CTGCTGCATCTAGAGAACAATGA 58.560 43.478 1.31 0.00 0.00 2.57
1279 1285 6.083098 TCTAGAGAACAATGAGCATCTAGC 57.917 41.667 0.00 0.00 46.19 3.42
1297 1303 7.469181 GCATCTAGCCAGCATTGTTTATAAAGT 60.469 37.037 0.00 0.00 37.23 2.66
1342 1348 1.806623 CGCTTAAGTGATAAGGCGCCT 60.807 52.381 27.08 27.08 41.19 5.52
1406 1432 3.556365 GTCGCTTAAGCATCCTTTAGGTC 59.444 47.826 26.29 2.00 42.21 3.85
1407 1433 3.196901 TCGCTTAAGCATCCTTTAGGTCA 59.803 43.478 26.29 0.00 42.21 4.02
1559 1585 1.427419 CTGCGTGAGAGACCGAGAG 59.573 63.158 0.00 0.00 0.00 3.20
1594 1620 2.055042 CGTGGAGGAGGTGAGGAGG 61.055 68.421 0.00 0.00 0.00 4.30
1595 1621 1.388531 GTGGAGGAGGTGAGGAGGA 59.611 63.158 0.00 0.00 0.00 3.71
1596 1622 0.686112 GTGGAGGAGGTGAGGAGGAG 60.686 65.000 0.00 0.00 0.00 3.69
1603 1629 1.679305 GGTGAGGAGGAGCGAGTGA 60.679 63.158 0.00 0.00 0.00 3.41
1676 1702 1.294138 CCGCTGTTTAGGTCGGGAA 59.706 57.895 0.00 0.00 38.35 3.97
1684 1710 3.073356 TGTTTAGGTCGGGAAGGAAATGT 59.927 43.478 0.00 0.00 0.00 2.71
1700 1726 2.683211 ATGTATTGGGGAGGGATTGC 57.317 50.000 0.00 0.00 0.00 3.56
1749 1778 6.150034 AGGGTTAGTCTTACTCTTACTGGA 57.850 41.667 0.00 0.00 0.00 3.86
1801 1830 1.048601 ATCCAGCACGTATCGGGAAT 58.951 50.000 11.58 1.20 31.86 3.01
1808 1837 4.750098 CAGCACGTATCGGGAATTATCTTT 59.250 41.667 0.00 0.00 28.17 2.52
1847 1876 9.594478 TTTATTAATCGCAGATACTTCACTGAA 57.406 29.630 0.00 0.00 45.12 3.02
1874 1903 1.887242 GCCACGGATTCGCTATGCA 60.887 57.895 0.00 0.00 40.63 3.96
1883 1912 3.554960 GGATTCGCTATGCACAGGACATA 60.555 47.826 0.00 0.00 0.00 2.29
1886 1915 2.627699 TCGCTATGCACAGGACATATCA 59.372 45.455 0.00 0.00 29.96 2.15
1924 1953 7.862372 GTGTTCATTAGCTGTTTCAGATTTTCA 59.138 33.333 0.00 0.00 32.44 2.69
1933 1962 7.231317 AGCTGTTTCAGATTTTCAACCAGAATA 59.769 33.333 0.66 0.00 32.62 1.75
1975 2004 8.887717 CATGTCTAAAGTTTCATAAGCTTAGCT 58.112 33.333 12.54 0.00 42.56 3.32
2024 2053 9.875691 ATGCAAGTTAATAAATTCTTCCTTTCC 57.124 29.630 0.00 0.00 0.00 3.13
2161 2221 4.785341 GCGCCGGTAAAGATAACAATGAAG 60.785 45.833 1.90 0.00 0.00 3.02
2184 2244 7.111247 AGAATTCAGAATTTGGTCACAACAA 57.889 32.000 9.84 0.00 36.06 2.83
2185 2245 6.980397 AGAATTCAGAATTTGGTCACAACAAC 59.020 34.615 9.84 0.00 36.06 3.32
2186 2246 5.651387 TTCAGAATTTGGTCACAACAACA 57.349 34.783 0.00 0.00 36.06 3.33
2187 2247 4.992688 TCAGAATTTGGTCACAACAACAC 58.007 39.130 0.00 0.00 36.06 3.32
2188 2248 4.111916 CAGAATTTGGTCACAACAACACC 58.888 43.478 0.00 0.00 36.06 4.16
2189 2249 4.023291 AGAATTTGGTCACAACAACACCT 58.977 39.130 0.00 0.00 36.06 4.00
2190 2250 5.067153 CAGAATTTGGTCACAACAACACCTA 59.933 40.000 0.00 0.00 36.06 3.08
2201 2261 6.375736 TCACAACAACACCTATTTTTGACTCA 59.624 34.615 0.00 0.00 0.00 3.41
2245 2305 2.165998 GGAGTAGGTGTGTTCGGTAGT 58.834 52.381 0.00 0.00 0.00 2.73
2277 2337 9.284968 CAGATTTTCCACCGGAATATTAACTAT 57.715 33.333 9.46 0.00 41.71 2.12
2278 2338 9.284968 AGATTTTCCACCGGAATATTAACTATG 57.715 33.333 9.46 0.00 41.71 2.23
2279 2339 8.990163 ATTTTCCACCGGAATATTAACTATGT 57.010 30.769 9.46 0.00 41.71 2.29
2280 2340 8.810990 TTTTCCACCGGAATATTAACTATGTT 57.189 30.769 9.46 0.00 41.71 2.71
2281 2341 8.810990 TTTCCACCGGAATATTAACTATGTTT 57.189 30.769 9.46 0.00 41.71 2.83
2282 2342 8.810990 TTCCACCGGAATATTAACTATGTTTT 57.189 30.769 9.46 0.00 36.71 2.43
2283 2343 9.902684 TTCCACCGGAATATTAACTATGTTTTA 57.097 29.630 9.46 0.00 36.71 1.52
2284 2344 9.550406 TCCACCGGAATATTAACTATGTTTTAG 57.450 33.333 9.46 0.00 0.00 1.85
2285 2345 8.287503 CCACCGGAATATTAACTATGTTTTAGC 58.712 37.037 9.46 0.00 0.00 3.09
2288 2348 9.825972 CCGGAATATTAACTATGTTTTAGCATG 57.174 33.333 0.00 0.00 0.00 4.06
2302 2362 6.995511 TTTTAGCATGTCTAAAATAGGCGT 57.004 33.333 21.13 0.00 46.62 5.68
2303 2363 6.781138 TTTTAGCATGTCTAAAATAGGCGTG 58.219 36.000 21.13 6.80 46.62 5.34
2304 2364 3.873910 AGCATGTCTAAAATAGGCGTGT 58.126 40.909 11.57 0.00 46.44 4.49
2305 2365 4.261801 AGCATGTCTAAAATAGGCGTGTT 58.738 39.130 11.57 4.36 46.44 3.32
2306 2366 5.424757 AGCATGTCTAAAATAGGCGTGTTA 58.575 37.500 11.57 0.00 46.44 2.41
2307 2367 5.523916 AGCATGTCTAAAATAGGCGTGTTAG 59.476 40.000 11.57 0.00 46.44 2.34
2308 2368 5.738370 CATGTCTAAAATAGGCGTGTTAGC 58.262 41.667 3.59 0.00 41.34 3.09
2309 2369 5.080969 TGTCTAAAATAGGCGTGTTAGCT 57.919 39.130 0.00 0.00 37.29 3.32
2310 2370 6.211587 TGTCTAAAATAGGCGTGTTAGCTA 57.788 37.500 0.00 0.00 37.29 3.32
2311 2371 6.270815 TGTCTAAAATAGGCGTGTTAGCTAG 58.729 40.000 0.00 0.00 37.29 3.42
2312 2372 5.175308 GTCTAAAATAGGCGTGTTAGCTAGC 59.825 44.000 6.62 6.62 37.29 3.42
2313 2373 3.821421 AAATAGGCGTGTTAGCTAGCT 57.179 42.857 23.12 23.12 37.29 3.32
2314 2374 2.802787 ATAGGCGTGTTAGCTAGCTG 57.197 50.000 27.68 11.08 37.29 4.24
2315 2375 1.471119 TAGGCGTGTTAGCTAGCTGT 58.529 50.000 27.68 4.38 37.29 4.40
2316 2376 0.608640 AGGCGTGTTAGCTAGCTGTT 59.391 50.000 27.68 3.54 37.29 3.16
2317 2377 1.002087 AGGCGTGTTAGCTAGCTGTTT 59.998 47.619 27.68 3.12 37.29 2.83
2318 2378 1.393883 GGCGTGTTAGCTAGCTGTTTC 59.606 52.381 27.68 14.04 37.29 2.78
2319 2379 2.066262 GCGTGTTAGCTAGCTGTTTCA 58.934 47.619 27.68 16.29 0.00 2.69
2320 2380 2.092838 GCGTGTTAGCTAGCTGTTTCAG 59.907 50.000 27.68 14.26 34.12 3.02
2321 2381 3.575630 CGTGTTAGCTAGCTGTTTCAGA 58.424 45.455 27.68 1.70 32.44 3.27
2322 2382 4.177026 CGTGTTAGCTAGCTGTTTCAGAT 58.823 43.478 27.68 0.00 32.44 2.90
2323 2383 4.627467 CGTGTTAGCTAGCTGTTTCAGATT 59.373 41.667 27.68 0.00 32.44 2.40
2324 2384 5.120830 CGTGTTAGCTAGCTGTTTCAGATTT 59.879 40.000 27.68 0.00 32.44 2.17
2325 2385 6.538444 GTGTTAGCTAGCTGTTTCAGATTTC 58.462 40.000 27.68 5.15 32.44 2.17
2326 2386 5.643777 TGTTAGCTAGCTGTTTCAGATTTCC 59.356 40.000 27.68 0.69 32.44 3.13
2327 2387 4.292186 AGCTAGCTGTTTCAGATTTCCA 57.708 40.909 18.57 0.00 32.44 3.53
2328 2388 4.006319 AGCTAGCTGTTTCAGATTTCCAC 58.994 43.478 18.57 0.00 32.44 4.02
2329 2389 3.127721 GCTAGCTGTTTCAGATTTCCACC 59.872 47.826 7.70 0.00 32.44 4.61
2351 2411 6.326583 CACCAGAATATTAACTACTCCCTCCA 59.673 42.308 0.00 0.00 0.00 3.86
2353 2413 8.239478 ACCAGAATATTAACTACTCCCTCCATA 58.761 37.037 0.00 0.00 0.00 2.74
2357 2417 8.808240 AATATTAACTACTCCCTCCATACCAA 57.192 34.615 0.00 0.00 0.00 3.67
2362 2422 7.519347 AACTACTCCCTCCATACCAAAATAA 57.481 36.000 0.00 0.00 0.00 1.40
2363 2423 7.138054 ACTACTCCCTCCATACCAAAATAAG 57.862 40.000 0.00 0.00 0.00 1.73
2364 2424 6.677076 ACTACTCCCTCCATACCAAAATAAGT 59.323 38.462 0.00 0.00 0.00 2.24
2366 2426 5.253096 ACTCCCTCCATACCAAAATAAGTGT 59.747 40.000 0.00 0.00 0.00 3.55
2367 2427 5.751586 TCCCTCCATACCAAAATAAGTGTC 58.248 41.667 0.00 0.00 0.00 3.67
2368 2428 5.491078 TCCCTCCATACCAAAATAAGTGTCT 59.509 40.000 0.00 0.00 0.00 3.41
2369 2429 5.823045 CCCTCCATACCAAAATAAGTGTCTC 59.177 44.000 0.00 0.00 0.00 3.36
2370 2430 6.414732 CCTCCATACCAAAATAAGTGTCTCA 58.585 40.000 0.00 0.00 0.00 3.27
2371 2431 6.884295 CCTCCATACCAAAATAAGTGTCTCAA 59.116 38.462 0.00 0.00 0.00 3.02
2372 2432 7.148239 CCTCCATACCAAAATAAGTGTCTCAAC 60.148 40.741 0.00 0.00 0.00 3.18
2374 2434 7.606456 TCCATACCAAAATAAGTGTCTCAACTC 59.394 37.037 0.00 0.00 0.00 3.01
2375 2435 7.607991 CCATACCAAAATAAGTGTCTCAACTCT 59.392 37.037 0.00 0.00 0.00 3.24
2377 2437 9.877178 ATACCAAAATAAGTGTCTCAACTCTAG 57.123 33.333 0.00 0.00 0.00 2.43
2378 2438 7.736893 ACCAAAATAAGTGTCTCAACTCTAGT 58.263 34.615 0.00 0.00 0.00 2.57
2379 2439 8.867097 ACCAAAATAAGTGTCTCAACTCTAGTA 58.133 33.333 0.00 0.00 0.00 1.82
2380 2440 9.141400 CCAAAATAAGTGTCTCAACTCTAGTAC 57.859 37.037 0.00 0.00 0.00 2.73
2383 2443 9.694137 AAATAAGTGTCTCAACTCTAGTACAAC 57.306 33.333 0.00 0.00 0.00 3.32
2384 2444 6.963083 AAGTGTCTCAACTCTAGTACAACT 57.037 37.500 0.00 0.00 0.00 3.16
2581 2905 3.219281 GGAGTACAAAAAGGGTGAAGCA 58.781 45.455 0.00 0.00 0.00 3.91
2873 3202 3.797039 ACGTGTGCAAGCATAGATGTAT 58.203 40.909 0.00 0.00 0.00 2.29
2938 3296 3.862267 GCTGAGTAAGTAGCATGTGAGTG 59.138 47.826 0.00 0.00 39.67 3.51
2990 3348 1.671379 GCTCGTTTGGGTGGAGGAC 60.671 63.158 0.00 0.00 0.00 3.85
3009 3380 2.047179 GTCCTGTGCGGAACCCTC 60.047 66.667 0.00 0.00 45.32 4.30
3153 3524 4.151335 GTGCAATGTGTTTTGTTGTGTCAA 59.849 37.500 0.00 0.00 0.00 3.18
3164 3535 6.942886 TTTGTTGTGTCAATGAAGTGTTTC 57.057 33.333 0.00 0.00 0.00 2.78
3165 3536 5.895636 TGTTGTGTCAATGAAGTGTTTCT 57.104 34.783 0.00 0.00 34.31 2.52
3169 3540 4.035558 TGTGTCAATGAAGTGTTTCTCAGC 59.964 41.667 0.00 0.00 34.31 4.26
3196 3591 5.384063 TGTGTTTTGTTGTGACAGTGAAT 57.616 34.783 0.00 0.00 37.04 2.57
3213 3608 8.498054 ACAGTGAATTAGTCATAGAAATGTGG 57.502 34.615 0.00 0.00 38.90 4.17
3327 3760 5.609533 ACCAACACTGTACTTTGTACTCT 57.390 39.130 8.94 0.00 0.00 3.24
3331 3764 6.239064 CCAACACTGTACTTTGTACTCTCTCT 60.239 42.308 8.94 0.00 0.00 3.10
3464 3899 1.537202 GTTGAAGCGTCTTGCCTCATT 59.463 47.619 0.31 0.00 43.35 2.57
3516 3951 3.129988 GGCTTATCCTTGGATATGCATGC 59.870 47.826 30.91 11.82 38.90 4.06
3521 3956 1.135489 CCTTGGATATGCATGCATCGC 60.135 52.381 35.35 26.07 37.82 4.58
3565 4000 4.724399 TCTACAGAGGGAGATTGCTAGAG 58.276 47.826 0.00 0.00 0.00 2.43
3584 4019 6.092533 GCTAGAGATAAACTAGGCTACGGTAG 59.907 46.154 10.83 10.83 38.11 3.18
3601 4036 6.903883 ACGGTAGCAAGACATAAATGTTAG 57.096 37.500 0.00 0.00 41.95 2.34
3713 4154 4.106909 CGTTAAAAAGCCGAAAAACTGGT 58.893 39.130 0.00 0.00 0.00 4.00
3746 4187 6.519382 TGACACAATTAGATCTCATGGCTAG 58.481 40.000 0.00 0.00 0.00 3.42
3781 4222 6.238211 CGGAACTTAATGAAGTCATAAGCAGG 60.238 42.308 0.00 0.00 45.50 4.85
3864 4305 2.873133 TTTTTGGAATGCGAACCGTT 57.127 40.000 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.092968 TCGCCAAGGATTCTGCTATGTT 60.093 45.455 0.00 0.00 0.00 2.71
27 28 6.736853 GGTTGAACGAGTAAATTCAGATTTCG 59.263 38.462 0.00 0.00 36.26 3.46
69 70 3.243839 GCTGCTTGGGATGAAACAAGAAA 60.244 43.478 8.45 0.00 45.22 2.52
83 84 2.363359 AGACAAGGAAAAAGCTGCTTGG 59.637 45.455 16.73 2.86 45.96 3.61
149 150 1.850345 TGAAAACTGTGAGGAAGGGGT 59.150 47.619 0.00 0.00 0.00 4.95
187 188 0.472734 ACACCTCTGTTGCTCCCTCT 60.473 55.000 0.00 0.00 0.00 3.69
227 228 2.582052 TCATGGTGGTCTTGGAAACAC 58.418 47.619 0.00 0.00 42.67 3.32
265 266 5.420725 ACAAGCATGACACCTCTGTTATA 57.579 39.130 0.00 0.00 0.00 0.98
294 295 1.293924 ACGCAATCACATAGCTGAGC 58.706 50.000 0.00 0.00 0.00 4.26
320 321 3.312736 AAACAACACTGGGTCAGGAAT 57.687 42.857 0.00 0.00 35.51 3.01
359 360 1.621992 AGTGATCACTGACACGAGGT 58.378 50.000 27.37 0.00 40.75 3.85
416 417 5.712917 AGGTACCAAACAAGAAAAGTTGTGA 59.287 36.000 15.94 0.00 39.82 3.58
821 824 7.970614 GCAAGATCCTAAAACATAAGAAAGGTG 59.029 37.037 0.00 0.00 0.00 4.00
861 864 3.876914 TGAGCTTTGTAACTCACAACCTG 59.123 43.478 0.00 0.00 46.80 4.00
966 969 9.687210 TGTGATTTCAATGAAGAGAAGATTTTG 57.313 29.630 0.00 0.00 0.00 2.44
1087 1093 7.921304 ACTTGCATATTGATATACTGGATGGA 58.079 34.615 0.00 0.00 0.00 3.41
1121 1127 8.355913 TGATACAAAGTGTGAACATAATGCAAA 58.644 29.630 0.00 0.00 0.00 3.68
1150 1156 5.263599 TGGTGAATTCTGAATATGGCACTT 58.736 37.500 7.05 0.00 0.00 3.16
1184 1190 4.146961 CAGCAAGTGAAAATAACGCAACAG 59.853 41.667 0.00 0.00 0.00 3.16
1213 1219 0.957395 CGGTGGCTCTGCAACATCTT 60.957 55.000 0.00 0.00 33.46 2.40
1267 1273 2.158652 ACAATGCTGGCTAGATGCTCAT 60.159 45.455 0.00 0.00 42.39 2.90
1270 1276 2.431954 AACAATGCTGGCTAGATGCT 57.568 45.000 0.00 0.00 42.39 3.79
1279 1285 6.324819 CAGGACACTTTATAAACAATGCTGG 58.675 40.000 9.66 0.00 0.00 4.85
1297 1303 0.966179 TAAGCGTCTGAAGCAGGACA 59.034 50.000 17.46 0.00 37.01 4.02
1320 1326 1.258197 GCGCCTTATCACTTAAGCGAC 59.742 52.381 6.36 0.00 38.54 5.19
1321 1327 1.567504 GCGCCTTATCACTTAAGCGA 58.432 50.000 6.36 0.00 38.54 4.93
1322 1328 0.582005 GGCGCCTTATCACTTAAGCG 59.418 55.000 22.15 0.00 38.90 4.68
1323 1329 1.954927 AGGCGCCTTATCACTTAAGC 58.045 50.000 27.08 0.00 36.71 3.09
1324 1330 2.614057 CCAAGGCGCCTTATCACTTAAG 59.386 50.000 39.69 23.54 37.61 1.85
1325 1331 2.639065 CCAAGGCGCCTTATCACTTAA 58.361 47.619 39.69 0.00 34.50 1.85
1326 1332 1.745827 GCCAAGGCGCCTTATCACTTA 60.746 52.381 39.69 0.00 34.50 2.24
1327 1333 1.032114 GCCAAGGCGCCTTATCACTT 61.032 55.000 39.69 15.74 34.50 3.16
1328 1334 1.452108 GCCAAGGCGCCTTATCACT 60.452 57.895 39.69 16.59 34.50 3.41
1329 1335 1.718757 CTGCCAAGGCGCCTTATCAC 61.719 60.000 39.69 27.23 45.51 3.06
1330 1336 1.451927 CTGCCAAGGCGCCTTATCA 60.452 57.895 39.69 33.44 45.51 2.15
1342 1348 3.885297 GCATATTTCTAAGGAGCTGCCAA 59.115 43.478 0.00 0.00 40.02 4.52
1349 1355 6.429385 CCTAAAGCAGGCATATTTCTAAGGAG 59.571 42.308 0.00 0.00 37.70 3.69
1350 1356 6.299141 CCTAAAGCAGGCATATTTCTAAGGA 58.701 40.000 0.00 0.00 37.70 3.36
1386 1412 3.309954 GTGACCTAAAGGATGCTTAAGCG 59.690 47.826 21.97 7.26 40.64 4.68
1406 1432 5.732247 GCATGGTTTATAAGGCGGTAAAGTG 60.732 44.000 0.00 0.00 0.00 3.16
1407 1433 4.337274 GCATGGTTTATAAGGCGGTAAAGT 59.663 41.667 0.00 0.00 0.00 2.66
1471 1497 7.437862 CCTTTCTCTCTAATGCTACTGATGTTC 59.562 40.741 0.00 0.00 0.00 3.18
1474 1500 6.041409 TCCCTTTCTCTCTAATGCTACTGATG 59.959 42.308 0.00 0.00 0.00 3.07
1478 1504 4.898861 CCTCCCTTTCTCTCTAATGCTACT 59.101 45.833 0.00 0.00 0.00 2.57
1559 1585 2.352032 CGTCACCCCTGACTCCTCC 61.352 68.421 0.00 0.00 44.27 4.30
1560 1586 1.606889 ACGTCACCCCTGACTCCTC 60.607 63.158 0.00 0.00 44.27 3.71
1561 1587 1.908793 CACGTCACCCCTGACTCCT 60.909 63.158 0.00 0.00 44.27 3.69
1594 1620 2.888863 CCCCAGTCTCACTCGCTC 59.111 66.667 0.00 0.00 0.00 5.03
1595 1621 3.386237 GCCCCAGTCTCACTCGCT 61.386 66.667 0.00 0.00 0.00 4.93
1596 1622 3.655810 CTGCCCCAGTCTCACTCGC 62.656 68.421 0.00 0.00 0.00 5.03
1603 1629 3.474570 GCGATCCTGCCCCAGTCT 61.475 66.667 0.00 0.00 0.00 3.24
1676 1702 2.871796 TCCCTCCCCAATACATTTCCT 58.128 47.619 0.00 0.00 0.00 3.36
1684 1710 1.150536 GCGCAATCCCTCCCCAATA 59.849 57.895 0.30 0.00 0.00 1.90
1700 1726 2.367202 ATGGTACCCCAGTCCAGCG 61.367 63.158 10.07 0.00 46.15 5.18
1749 1778 1.133136 ACTATCCCGATACAGCCCAGT 60.133 52.381 0.00 0.00 0.00 4.00
1812 1841 9.284594 GTATCTGCGATTAATAAAGCAACAAAA 57.715 29.630 12.00 0.68 39.26 2.44
1816 1845 8.335356 TGAAGTATCTGCGATTAATAAAGCAAC 58.665 33.333 12.00 8.68 39.26 4.17
1818 1847 7.710907 AGTGAAGTATCTGCGATTAATAAAGCA 59.289 33.333 10.87 10.87 38.03 3.91
1819 1848 8.006590 CAGTGAAGTATCTGCGATTAATAAAGC 58.993 37.037 0.00 0.00 0.00 3.51
1820 1849 9.249457 TCAGTGAAGTATCTGCGATTAATAAAG 57.751 33.333 0.00 0.00 0.00 1.85
1821 1850 9.594478 TTCAGTGAAGTATCTGCGATTAATAAA 57.406 29.630 0.08 0.00 0.00 1.40
1822 1851 9.594478 TTTCAGTGAAGTATCTGCGATTAATAA 57.406 29.630 5.56 0.00 0.00 1.40
1823 1852 9.031360 GTTTCAGTGAAGTATCTGCGATTAATA 57.969 33.333 5.56 0.00 0.00 0.98
1824 1853 7.254117 CGTTTCAGTGAAGTATCTGCGATTAAT 60.254 37.037 5.56 0.00 0.00 1.40
1833 1862 6.037098 GCTGATACGTTTCAGTGAAGTATCT 58.963 40.000 28.11 10.45 44.10 1.98
1847 1876 1.801395 CGAATCCGTGGCTGATACGTT 60.801 52.381 0.00 0.00 39.76 3.99
1874 1903 6.213600 ACCTAAGAAACACTGATATGTCCTGT 59.786 38.462 0.00 0.00 30.55 4.00
1883 1912 7.119846 GCTAATGAACACCTAAGAAACACTGAT 59.880 37.037 0.00 0.00 0.00 2.90
1886 1915 6.428159 CAGCTAATGAACACCTAAGAAACACT 59.572 38.462 0.00 0.00 0.00 3.55
1975 2004 7.819415 GCATACTGATATACTGAATGGCACTTA 59.181 37.037 0.00 0.00 0.00 2.24
2161 2221 6.756074 TGTTGTTGTGACCAAATTCTGAATTC 59.244 34.615 15.43 0.00 30.94 2.17
2184 2244 7.147976 GCTCAAATTGAGTCAAAAATAGGTGT 58.852 34.615 22.28 0.00 45.94 4.16
2185 2245 7.147312 TGCTCAAATTGAGTCAAAAATAGGTG 58.853 34.615 22.28 1.29 45.94 4.00
2186 2246 7.288810 TGCTCAAATTGAGTCAAAAATAGGT 57.711 32.000 22.28 0.00 45.94 3.08
2187 2247 8.767478 AATGCTCAAATTGAGTCAAAAATAGG 57.233 30.769 22.28 0.79 45.94 2.57
2189 2249 9.985730 AGAAATGCTCAAATTGAGTCAAAAATA 57.014 25.926 22.28 1.34 45.94 1.40
2190 2250 8.897872 AGAAATGCTCAAATTGAGTCAAAAAT 57.102 26.923 22.28 9.76 45.94 1.82
2201 2261 8.156165 TCCCATGTTTTTAGAAATGCTCAAATT 58.844 29.630 0.00 0.00 0.00 1.82
2212 2272 6.001460 CACACCTACTCCCATGTTTTTAGAA 58.999 40.000 0.00 0.00 0.00 2.10
2245 2305 3.556999 TCCGGTGGAAAATCTGAAACAA 58.443 40.909 0.00 0.00 0.00 2.83
2280 2340 5.878116 ACACGCCTATTTTAGACATGCTAAA 59.122 36.000 14.44 14.44 45.01 1.85
2281 2341 5.424757 ACACGCCTATTTTAGACATGCTAA 58.575 37.500 0.00 0.00 37.30 3.09
2282 2342 5.018539 ACACGCCTATTTTAGACATGCTA 57.981 39.130 0.00 0.00 0.00 3.49
2283 2343 3.873910 ACACGCCTATTTTAGACATGCT 58.126 40.909 0.00 0.00 0.00 3.79
2284 2344 4.616181 AACACGCCTATTTTAGACATGC 57.384 40.909 0.00 0.00 0.00 4.06
2285 2345 5.523916 AGCTAACACGCCTATTTTAGACATG 59.476 40.000 0.00 0.00 0.00 3.21
2288 2348 5.175308 GCTAGCTAACACGCCTATTTTAGAC 59.825 44.000 7.70 0.00 0.00 2.59
2290 2350 5.175856 CAGCTAGCTAACACGCCTATTTTAG 59.824 44.000 18.86 0.00 0.00 1.85
2291 2351 5.047847 CAGCTAGCTAACACGCCTATTTTA 58.952 41.667 18.86 0.00 0.00 1.52
2292 2352 3.871594 CAGCTAGCTAACACGCCTATTTT 59.128 43.478 18.86 0.00 0.00 1.82
2293 2353 3.118738 ACAGCTAGCTAACACGCCTATTT 60.119 43.478 18.86 0.00 0.00 1.40
2294 2354 2.431057 ACAGCTAGCTAACACGCCTATT 59.569 45.455 18.86 0.00 0.00 1.73
2295 2355 2.032620 ACAGCTAGCTAACACGCCTAT 58.967 47.619 18.86 0.00 0.00 2.57
2296 2356 1.471119 ACAGCTAGCTAACACGCCTA 58.529 50.000 18.86 0.00 0.00 3.93
2297 2357 0.608640 AACAGCTAGCTAACACGCCT 59.391 50.000 18.86 0.00 0.00 5.52
2298 2358 1.393883 GAAACAGCTAGCTAACACGCC 59.606 52.381 18.86 0.00 0.00 5.68
2299 2359 2.066262 TGAAACAGCTAGCTAACACGC 58.934 47.619 18.86 5.78 0.00 5.34
2300 2360 3.575630 TCTGAAACAGCTAGCTAACACG 58.424 45.455 18.86 7.23 0.00 4.49
2301 2361 6.402658 GGAAATCTGAAACAGCTAGCTAACAC 60.403 42.308 18.86 10.23 0.00 3.32
2302 2362 5.643777 GGAAATCTGAAACAGCTAGCTAACA 59.356 40.000 18.86 13.43 0.00 2.41
2303 2363 5.643777 TGGAAATCTGAAACAGCTAGCTAAC 59.356 40.000 18.86 9.52 0.00 2.34
2304 2364 5.643777 GTGGAAATCTGAAACAGCTAGCTAA 59.356 40.000 18.86 0.00 0.00 3.09
2305 2365 5.178797 GTGGAAATCTGAAACAGCTAGCTA 58.821 41.667 18.86 0.00 0.00 3.32
2306 2366 4.006319 GTGGAAATCTGAAACAGCTAGCT 58.994 43.478 12.68 12.68 0.00 3.32
2307 2367 3.127721 GGTGGAAATCTGAAACAGCTAGC 59.872 47.826 6.62 6.62 0.00 3.42
2308 2368 4.326826 TGGTGGAAATCTGAAACAGCTAG 58.673 43.478 0.00 0.00 0.00 3.42
2309 2369 4.041567 TCTGGTGGAAATCTGAAACAGCTA 59.958 41.667 0.00 0.00 0.00 3.32
2310 2370 3.152341 CTGGTGGAAATCTGAAACAGCT 58.848 45.455 0.00 0.00 0.00 4.24
2311 2371 3.149196 TCTGGTGGAAATCTGAAACAGC 58.851 45.455 0.00 0.00 0.00 4.40
2312 2372 5.972107 ATTCTGGTGGAAATCTGAAACAG 57.028 39.130 0.00 0.00 37.49 3.16
2313 2373 9.527157 TTAATATTCTGGTGGAAATCTGAAACA 57.473 29.630 0.00 0.00 37.49 2.83
2314 2374 9.788960 GTTAATATTCTGGTGGAAATCTGAAAC 57.211 33.333 0.00 0.00 37.49 2.78
2315 2375 9.753674 AGTTAATATTCTGGTGGAAATCTGAAA 57.246 29.630 0.00 0.00 37.49 2.69
2317 2377 9.832445 GTAGTTAATATTCTGGTGGAAATCTGA 57.168 33.333 0.00 0.00 37.49 3.27
2318 2378 9.838339 AGTAGTTAATATTCTGGTGGAAATCTG 57.162 33.333 0.00 0.00 37.49 2.90
2320 2380 9.274206 GGAGTAGTTAATATTCTGGTGGAAATC 57.726 37.037 0.00 0.00 37.49 2.17
2321 2381 8.218488 GGGAGTAGTTAATATTCTGGTGGAAAT 58.782 37.037 0.00 0.00 37.49 2.17
2322 2382 7.404980 AGGGAGTAGTTAATATTCTGGTGGAAA 59.595 37.037 0.00 0.00 37.49 3.13
2323 2383 6.906901 AGGGAGTAGTTAATATTCTGGTGGAA 59.093 38.462 0.00 0.00 38.41 3.53
2324 2384 6.449956 AGGGAGTAGTTAATATTCTGGTGGA 58.550 40.000 0.00 0.00 0.00 4.02
2325 2385 6.239629 GGAGGGAGTAGTTAATATTCTGGTGG 60.240 46.154 0.00 0.00 0.00 4.61
2326 2386 6.326583 TGGAGGGAGTAGTTAATATTCTGGTG 59.673 42.308 0.00 0.00 0.00 4.17
2327 2387 6.449956 TGGAGGGAGTAGTTAATATTCTGGT 58.550 40.000 0.00 0.00 0.00 4.00
2328 2388 6.996180 TGGAGGGAGTAGTTAATATTCTGG 57.004 41.667 0.00 0.00 0.00 3.86
2329 2389 8.532819 GGTATGGAGGGAGTAGTTAATATTCTG 58.467 40.741 0.00 0.00 0.00 3.02
2351 2411 9.877178 CTAGAGTTGAGACACTTATTTTGGTAT 57.123 33.333 0.00 0.00 0.00 2.73
2353 2413 7.736893 ACTAGAGTTGAGACACTTATTTTGGT 58.263 34.615 0.00 0.00 0.00 3.67
2357 2417 9.694137 GTTGTACTAGAGTTGAGACACTTATTT 57.306 33.333 0.00 0.00 0.00 1.40
2362 2422 6.963083 AAGTTGTACTAGAGTTGAGACACT 57.037 37.500 0.00 0.00 0.00 3.55
2363 2423 6.979238 ACAAAGTTGTACTAGAGTTGAGACAC 59.021 38.462 0.00 0.00 40.16 3.67
2364 2424 7.108841 ACAAAGTTGTACTAGAGTTGAGACA 57.891 36.000 0.00 0.00 40.16 3.41
2366 2426 7.013942 TGCTACAAAGTTGTACTAGAGTTGAGA 59.986 37.037 0.00 0.00 42.35 3.27
2367 2427 7.145985 TGCTACAAAGTTGTACTAGAGTTGAG 58.854 38.462 0.00 0.00 42.35 3.02
2368 2428 7.046292 TGCTACAAAGTTGTACTAGAGTTGA 57.954 36.000 0.00 0.00 42.35 3.18
2369 2429 7.385205 ACATGCTACAAAGTTGTACTAGAGTTG 59.615 37.037 0.00 0.00 42.35 3.16
2370 2430 7.442656 ACATGCTACAAAGTTGTACTAGAGTT 58.557 34.615 0.00 0.00 42.35 3.01
2371 2431 6.994221 ACATGCTACAAAGTTGTACTAGAGT 58.006 36.000 0.00 0.00 42.35 3.24
2372 2432 7.316640 AGACATGCTACAAAGTTGTACTAGAG 58.683 38.462 0.00 0.00 42.35 2.43
2374 2434 8.981724 TTAGACATGCTACAAAGTTGTACTAG 57.018 34.615 0.00 0.00 42.35 2.57
2375 2435 9.419297 CTTTAGACATGCTACAAAGTTGTACTA 57.581 33.333 0.00 0.00 42.35 1.82
2377 2437 8.009974 CACTTTAGACATGCTACAAAGTTGTAC 58.990 37.037 10.78 0.00 42.35 2.90
2378 2438 7.713507 ACACTTTAGACATGCTACAAAGTTGTA 59.286 33.333 10.78 3.97 42.35 2.41
2379 2439 6.542370 ACACTTTAGACATGCTACAAAGTTGT 59.458 34.615 10.78 1.75 44.86 3.32
2380 2440 6.959361 ACACTTTAGACATGCTACAAAGTTG 58.041 36.000 10.78 9.60 31.09 3.16
2382 2442 6.288294 TGACACTTTAGACATGCTACAAAGT 58.712 36.000 8.64 8.64 32.80 2.66
2383 2443 6.785488 TGACACTTTAGACATGCTACAAAG 57.215 37.500 0.00 0.50 0.00 2.77
2384 2444 8.840833 TTATGACACTTTAGACATGCTACAAA 57.159 30.769 0.00 0.00 0.00 2.83
2500 2824 4.943705 CAGCACTCACCTACAATTATGGTT 59.056 41.667 0.00 0.00 30.72 3.67
2581 2905 1.754234 GCATCGACCATGGGGCTTT 60.754 57.895 18.09 0.00 37.90 3.51
2667 2991 5.300411 TGACTCATCTGCACATCCATATT 57.700 39.130 0.00 0.00 0.00 1.28
2873 3202 4.006989 ACGCAGCACAACCTTAATGATTA 58.993 39.130 0.00 0.00 0.00 1.75
2938 3296 0.936297 CAGCAAGCAAGACGCCAAAC 60.936 55.000 0.00 0.00 44.04 2.93
3001 3372 1.279846 TCCACCATAAACGAGGGTTCC 59.720 52.381 0.00 0.00 40.04 3.62
3009 3380 7.315247 TGTTTCAGATATTCCACCATAAACG 57.685 36.000 0.00 0.00 0.00 3.60
3153 3524 1.882912 TGCGCTGAGAAACACTTCAT 58.117 45.000 9.73 0.00 33.64 2.57
3164 3535 2.124011 ACAAAACACATTGCGCTGAG 57.876 45.000 9.73 0.00 33.52 3.35
3165 3536 2.191802 CAACAAAACACATTGCGCTGA 58.808 42.857 9.73 0.00 33.52 4.26
3169 3540 2.919859 TGTCACAACAAAACACATTGCG 59.080 40.909 0.00 0.00 33.52 4.85
3196 3591 7.661437 GCATGTATCCCACATTTCTATGACTAA 59.339 37.037 0.00 0.00 46.01 2.24
3213 3608 3.165058 TCTCTTGTCACGCATGTATCC 57.835 47.619 0.00 0.00 0.00 2.59
3392 3825 8.179509 TGCTATAAGATACTCCCTCTAACAAC 57.820 38.462 0.00 0.00 0.00 3.32
3464 3899 2.201921 AACACGCAGAGTCTCCTCTA 57.798 50.000 0.00 0.00 46.52 2.43
3488 3923 2.700225 TATCCAAGGATAAGCCCCTGCT 60.700 50.000 6.35 0.00 41.90 4.24
3494 3929 3.129988 GCATGCATATCCAAGGATAAGCC 59.870 47.826 25.14 12.21 45.59 4.35
3516 3951 4.460731 TCTCCAAGATATACTCCAGCGATG 59.539 45.833 0.00 0.00 0.00 3.84
3584 4019 5.880332 TCAGACCCTAACATTTATGTCTTGC 59.120 40.000 0.00 0.00 40.80 4.01
3601 4036 7.768807 ACTTAGATATGACATAGTCAGACCC 57.231 40.000 6.01 0.00 46.04 4.46
3630 4065 5.117406 ACAAAAATAAAACAGGGGGCAAA 57.883 34.783 0.00 0.00 0.00 3.68
3669 4110 5.239744 ACGTTCCAACTAACATTACATGCAA 59.760 36.000 0.00 0.00 0.00 4.08
3670 4111 4.757657 ACGTTCCAACTAACATTACATGCA 59.242 37.500 0.00 0.00 0.00 3.96
3671 4112 5.291293 ACGTTCCAACTAACATTACATGC 57.709 39.130 0.00 0.00 0.00 4.06
3672 4113 9.666626 TTTTAACGTTCCAACTAACATTACATG 57.333 29.630 2.82 0.00 0.00 3.21
3680 4121 4.671964 CGGCTTTTTAACGTTCCAACTAAC 59.328 41.667 2.82 0.00 0.00 2.34
3687 4128 4.799949 AGTTTTTCGGCTTTTTAACGTTCC 59.200 37.500 2.82 0.00 0.00 3.62
3713 4154 8.539544 TGAGATCTAATTGTGTCAAGTGGATAA 58.460 33.333 8.28 0.00 0.00 1.75
3746 4187 5.511234 TCATTAAGTTCCGAGCTACCTAC 57.489 43.478 0.00 0.00 0.00 3.18
3762 4203 6.061022 TGTCCCTGCTTATGACTTCATTAA 57.939 37.500 0.00 0.00 37.76 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.