Multiple sequence alignment - TraesCS4A01G053400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G053400 chr4A 100.000 2783 0 0 1 2783 45133341 45136123 0.000000e+00 5140.0
1 TraesCS4A01G053400 chr4A 96.429 112 4 0 424 535 736461242 736461131 4.730000e-43 185.0
2 TraesCS4A01G053400 chr4D 95.416 1527 54 8 532 2052 419420899 419419383 0.000000e+00 2418.0
3 TraesCS4A01G053400 chr4D 92.814 334 18 5 101 430 419421227 419420896 1.940000e-131 479.0
4 TraesCS4A01G053400 chr4D 85.915 355 47 3 2097 2449 419419384 419419031 2.620000e-100 375.0
5 TraesCS4A01G053400 chr4D 90.265 113 8 2 1 113 419421398 419421289 8.030000e-31 145.0
6 TraesCS4A01G053400 chr4B 94.408 1538 62 13 530 2049 517493153 517491622 0.000000e+00 2342.0
7 TraesCS4A01G053400 chr4B 88.235 289 23 7 101 384 517493457 517493175 4.440000e-88 335.0
8 TraesCS4A01G053400 chr4B 83.571 140 22 1 2312 2450 517491450 517491311 2.250000e-26 130.0
9 TraesCS4A01G053400 chr4B 86.726 113 12 2 1 113 517493621 517493512 3.760000e-24 122.0
10 TraesCS4A01G053400 chr5A 88.095 294 30 4 2465 2757 681509800 681509511 7.380000e-91 344.0
11 TraesCS4A01G053400 chr6B 97.273 110 3 0 427 536 665526528 665526637 1.320000e-43 187.0
12 TraesCS4A01G053400 chr6B 94.118 119 7 0 415 533 239360375 239360493 6.120000e-42 182.0
13 TraesCS4A01G053400 chr6B 77.037 135 24 6 2465 2597 199715838 199715709 1.380000e-08 71.3
14 TraesCS4A01G053400 chr3A 96.429 112 4 0 427 538 427104430 427104319 4.730000e-43 185.0
15 TraesCS4A01G053400 chr3B 94.167 120 7 0 414 533 205166482 205166363 1.700000e-42 183.0
16 TraesCS4A01G053400 chr3B 90.441 136 10 3 405 539 472584071 472583938 2.850000e-40 176.0
17 TraesCS4A01G053400 chr5B 93.388 121 7 1 415 535 167283415 167283534 7.920000e-41 178.0
18 TraesCS4A01G053400 chr5B 89.630 135 11 3 399 533 425294729 425294860 4.770000e-38 169.0
19 TraesCS4A01G053400 chr5B 77.165 127 19 7 2448 2565 711857747 711857622 6.430000e-07 65.8
20 TraesCS4A01G053400 chr2A 91.473 129 8 3 427 553 57865497 57865370 1.020000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G053400 chr4A 45133341 45136123 2782 False 5140.00 5140 100.0000 1 2783 1 chr4A.!!$F1 2782
1 TraesCS4A01G053400 chr4D 419419031 419421398 2367 True 854.25 2418 91.1025 1 2449 4 chr4D.!!$R1 2448
2 TraesCS4A01G053400 chr4B 517491311 517493621 2310 True 732.25 2342 88.2350 1 2450 4 chr4B.!!$R1 2449

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 520 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 2030 0.041833 AGGCCAGAGCAGAAGAGGTA 59.958 55.0 5.01 0.0 42.56 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.327386 ACTATTCTTGCCTAGGATCCAAAA 57.673 37.500 14.75 5.53 0.00 2.44
46 47 4.985538 TCCAAAAGAGTCCTTAATGTGCT 58.014 39.130 0.00 0.00 31.15 4.40
62 63 2.290960 TGTGCTGCTAGTCCTCTGTAGA 60.291 50.000 0.00 0.00 0.00 2.59
69 70 5.817784 TGCTAGTCCTCTGTAGACTTTACT 58.182 41.667 7.45 0.00 41.87 2.24
85 86 6.879458 AGACTTTACTGAGCGGATTAAAACAT 59.121 34.615 0.00 0.00 0.00 2.71
89 90 5.296813 ACTGAGCGGATTAAAACATTGTC 57.703 39.130 0.00 0.00 0.00 3.18
90 91 4.142902 ACTGAGCGGATTAAAACATTGTCG 60.143 41.667 0.00 0.00 0.00 4.35
98 99 7.431084 GCGGATTAAAACATTGTCGTGATAATT 59.569 33.333 0.00 0.00 0.00 1.40
132 206 9.979578 TTTACCACGATTTTGTAACTAGAGTAA 57.020 29.630 0.00 0.00 0.00 2.24
177 254 7.619964 ACGGTAGGGATAATTAACTGTTTTG 57.380 36.000 0.00 0.00 0.00 2.44
262 339 4.414337 ACTAGTGAATGATGCTCCTTCC 57.586 45.455 0.00 0.00 0.00 3.46
283 360 4.020039 TCCCGATAAGTTTCCAGCAGTAAA 60.020 41.667 0.00 0.00 0.00 2.01
351 428 5.578005 TCTCACCTTCTTTAGATACCACG 57.422 43.478 0.00 0.00 0.00 4.94
434 512 9.668497 AAATCTGTACAAATTAAGTACTCCCTC 57.332 33.333 17.13 0.00 41.76 4.30
435 513 7.179076 TCTGTACAAATTAAGTACTCCCTCC 57.821 40.000 17.13 0.00 41.76 4.30
436 514 5.969423 TGTACAAATTAAGTACTCCCTCCG 58.031 41.667 17.13 0.00 41.76 4.63
437 515 5.481473 TGTACAAATTAAGTACTCCCTCCGT 59.519 40.000 17.13 0.00 41.76 4.69
438 516 5.494390 ACAAATTAAGTACTCCCTCCGTT 57.506 39.130 0.00 0.00 0.00 4.44
439 517 5.485620 ACAAATTAAGTACTCCCTCCGTTC 58.514 41.667 0.00 0.00 0.00 3.95
440 518 4.382345 AATTAAGTACTCCCTCCGTTCG 57.618 45.455 0.00 0.00 0.00 3.95
441 519 1.755179 TAAGTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
442 520 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
443 521 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
444 522 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
445 523 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
446 524 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
447 525 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
448 526 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
449 527 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
450 528 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
451 529 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
452 530 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
453 531 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
454 532 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
455 533 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
456 534 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
457 535 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
458 536 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
459 537 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
460 538 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
461 539 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
462 540 6.442952 TCGGAATTACTTGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
463 541 6.263392 TCGGAATTACTTGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
464 542 7.040062 TCGGAATTACTTGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
465 543 7.062138 CGGAATTACTTGTCACAAAAATGGATG 59.938 37.037 0.00 0.00 0.00 3.51
466 544 7.872483 GGAATTACTTGTCACAAAAATGGATGT 59.128 33.333 0.00 0.00 0.00 3.06
467 545 9.906660 GAATTACTTGTCACAAAAATGGATGTA 57.093 29.630 0.00 0.00 0.00 2.29
470 548 7.765695 ACTTGTCACAAAAATGGATGTATCT 57.234 32.000 0.00 0.00 0.00 1.98
471 549 8.862325 ACTTGTCACAAAAATGGATGTATCTA 57.138 30.769 0.00 0.00 0.00 1.98
472 550 8.950210 ACTTGTCACAAAAATGGATGTATCTAG 58.050 33.333 0.00 0.00 0.00 2.43
473 551 9.166173 CTTGTCACAAAAATGGATGTATCTAGA 57.834 33.333 0.00 0.00 0.00 2.43
474 552 8.492673 TGTCACAAAAATGGATGTATCTAGAC 57.507 34.615 0.00 0.00 0.00 2.59
475 553 7.277760 TGTCACAAAAATGGATGTATCTAGACG 59.722 37.037 0.00 0.00 0.00 4.18
476 554 7.277981 GTCACAAAAATGGATGTATCTAGACGT 59.722 37.037 0.00 0.00 0.00 4.34
477 555 8.471609 TCACAAAAATGGATGTATCTAGACGTA 58.528 33.333 0.00 0.00 0.00 3.57
478 556 9.261180 CACAAAAATGGATGTATCTAGACGTAT 57.739 33.333 0.00 0.00 0.00 3.06
479 557 9.832445 ACAAAAATGGATGTATCTAGACGTATT 57.168 29.630 0.00 0.00 0.00 1.89
504 582 9.542462 TTTTAGTTCTATCTACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
505 583 6.978674 AGTTCTATCTACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
506 584 6.987386 AGTTCTATCTACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
507 585 6.778069 AGTTCTATCTACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
508 586 6.576662 TCTATCTACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
509 587 6.068670 TCTATCTACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
510 588 5.614324 ATCTACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
511 589 5.011090 TCTACATCCATTTCCGAGACAAG 57.989 43.478 0.00 0.00 0.00 3.16
512 590 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
513 591 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
514 592 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
515 593 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
516 594 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
517 595 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
518 596 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
519 597 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
520 598 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
521 599 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
522 600 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
523 601 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
524 602 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
525 603 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
526 604 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
527 605 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
528 606 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
572 650 0.741221 AGCCGACTGAGAAAATCGCC 60.741 55.000 0.00 0.00 34.52 5.54
596 674 4.018415 ACCTAATCAACTAGGCCACACATT 60.018 41.667 5.01 0.00 42.09 2.71
626 706 4.451774 CCCTCCTCGACTAAAGTAGATACG 59.548 50.000 0.00 0.00 0.00 3.06
641 721 7.747155 AGTAGATACGTATGCAGTCAGTAAT 57.253 36.000 13.97 0.00 0.00 1.89
645 725 8.336801 AGATACGTATGCAGTCAGTAATATCA 57.663 34.615 13.97 0.00 0.00 2.15
843 939 9.985730 TTCATTTATGAGAGCATTTCACTTTTT 57.014 25.926 0.00 0.00 38.19 1.94
887 983 5.461526 GTCAGTTTTACTGGAGAAATTGGC 58.538 41.667 6.96 0.00 45.94 4.52
895 997 2.692041 CTGGAGAAATTGGCATTCCCTC 59.308 50.000 0.00 0.00 0.00 4.30
896 998 2.312741 TGGAGAAATTGGCATTCCCTCT 59.687 45.455 0.00 0.00 0.00 3.69
897 999 3.527253 TGGAGAAATTGGCATTCCCTCTA 59.473 43.478 0.00 0.00 0.00 2.43
898 1000 4.168675 TGGAGAAATTGGCATTCCCTCTAT 59.831 41.667 0.00 0.00 0.00 1.98
899 1001 4.522022 GGAGAAATTGGCATTCCCTCTATG 59.478 45.833 0.00 0.00 0.00 2.23
900 1002 5.134725 AGAAATTGGCATTCCCTCTATGT 57.865 39.130 0.00 0.00 0.00 2.29
1069 1171 1.708341 ACAACCATCAAAAGGCAGCT 58.292 45.000 0.00 0.00 0.00 4.24
1149 1251 2.289819 CCTTGAATGCCCAATTTGCTGT 60.290 45.455 0.00 0.00 0.00 4.40
1455 1557 0.179000 CAGTATGTCCCTCCAGTGGC 59.821 60.000 3.51 0.00 0.00 5.01
1537 1639 2.773661 TCTGCCAGAGATAGAAATGCCA 59.226 45.455 0.00 0.00 0.00 4.92
1581 1683 1.202698 AGCGTGTCTCTCCAAAAGCTT 60.203 47.619 0.00 0.00 0.00 3.74
1831 1933 9.379791 GTACAGTTTATATAGCTTTGTGAAGGT 57.620 33.333 0.00 0.00 45.08 3.50
1832 1934 8.268850 ACAGTTTATATAGCTTTGTGAAGGTG 57.731 34.615 0.00 0.00 43.10 4.00
1833 1935 8.100791 ACAGTTTATATAGCTTTGTGAAGGTGA 58.899 33.333 0.00 0.00 43.10 4.02
1853 1956 7.175104 AGGTGAAAACAAAGCTTGGATATCTA 58.825 34.615 8.15 0.00 34.12 1.98
1854 1957 7.836183 AGGTGAAAACAAAGCTTGGATATCTAT 59.164 33.333 8.15 0.00 34.12 1.98
1863 1966 5.738909 AGCTTGGATATCTATTTCCATCCG 58.261 41.667 2.05 0.00 41.52 4.18
1868 1971 2.169832 ATCTATTTCCATCCGTGGCG 57.830 50.000 0.00 0.00 45.63 5.69
1871 1974 2.258748 TATTTCCATCCGTGGCGCCA 62.259 55.000 29.03 29.03 45.63 5.69
1885 1988 0.240945 GCGCCACTTTGCTGTTATGT 59.759 50.000 0.00 0.00 0.00 2.29
1888 1991 2.162681 GCCACTTTGCTGTTATGTCCT 58.837 47.619 0.00 0.00 0.00 3.85
1899 2002 8.706322 TTGCTGTTATGTCCTCTGTATAGATA 57.294 34.615 0.00 0.00 31.21 1.98
1911 2014 6.268847 CCTCTGTATAGATAGCCCTTTTCTGT 59.731 42.308 0.00 0.00 31.21 3.41
1922 2025 4.959839 AGCCCTTTTCTGTTCCTTGTTTTA 59.040 37.500 0.00 0.00 0.00 1.52
1924 2027 6.099701 AGCCCTTTTCTGTTCCTTGTTTTATT 59.900 34.615 0.00 0.00 0.00 1.40
1927 2030 9.173021 CCCTTTTCTGTTCCTTGTTTTATTTTT 57.827 29.630 0.00 0.00 0.00 1.94
1949 2052 1.556911 CCTCTTCTGCTCTGGCCTTTA 59.443 52.381 3.32 0.00 37.74 1.85
2014 2117 2.173519 CTTGTTCATGAGTGCCCCAAT 58.826 47.619 0.00 0.00 0.00 3.16
2036 2139 9.934190 CCAATCTTTGTAATTTTCCTTTTGTTG 57.066 29.630 0.00 0.00 0.00 3.33
2049 2153 3.510719 CTTTTGTTGTGGTCAGGTGTTG 58.489 45.455 0.00 0.00 0.00 3.33
2050 2154 2.208132 TTGTTGTGGTCAGGTGTTGT 57.792 45.000 0.00 0.00 0.00 3.32
2051 2155 3.351794 TTGTTGTGGTCAGGTGTTGTA 57.648 42.857 0.00 0.00 0.00 2.41
2052 2156 3.569194 TGTTGTGGTCAGGTGTTGTAT 57.431 42.857 0.00 0.00 0.00 2.29
2053 2157 3.892284 TGTTGTGGTCAGGTGTTGTATT 58.108 40.909 0.00 0.00 0.00 1.89
2054 2158 3.880490 TGTTGTGGTCAGGTGTTGTATTC 59.120 43.478 0.00 0.00 0.00 1.75
2055 2159 3.134574 TGTGGTCAGGTGTTGTATTCC 57.865 47.619 0.00 0.00 0.00 3.01
2056 2160 2.224670 TGTGGTCAGGTGTTGTATTCCC 60.225 50.000 0.00 0.00 0.00 3.97
2057 2161 2.039879 GTGGTCAGGTGTTGTATTCCCT 59.960 50.000 0.00 0.00 0.00 4.20
2058 2162 2.304761 TGGTCAGGTGTTGTATTCCCTC 59.695 50.000 0.00 0.00 0.00 4.30
2059 2163 2.355818 GGTCAGGTGTTGTATTCCCTCC 60.356 54.545 0.00 0.00 0.00 4.30
2060 2164 2.572104 GTCAGGTGTTGTATTCCCTCCT 59.428 50.000 0.00 0.00 0.00 3.69
2061 2165 3.773119 GTCAGGTGTTGTATTCCCTCCTA 59.227 47.826 0.00 0.00 0.00 2.94
2062 2166 4.409247 GTCAGGTGTTGTATTCCCTCCTAT 59.591 45.833 0.00 0.00 0.00 2.57
2063 2167 4.654262 TCAGGTGTTGTATTCCCTCCTATC 59.346 45.833 0.00 0.00 0.00 2.08
2064 2168 3.974642 AGGTGTTGTATTCCCTCCTATCC 59.025 47.826 0.00 0.00 0.00 2.59
2065 2169 3.714798 GGTGTTGTATTCCCTCCTATCCA 59.285 47.826 0.00 0.00 0.00 3.41
2066 2170 4.351111 GGTGTTGTATTCCCTCCTATCCAT 59.649 45.833 0.00 0.00 0.00 3.41
2067 2171 5.546499 GGTGTTGTATTCCCTCCTATCCATA 59.454 44.000 0.00 0.00 0.00 2.74
2068 2172 6.215636 GGTGTTGTATTCCCTCCTATCCATAT 59.784 42.308 0.00 0.00 0.00 1.78
2069 2173 7.257053 GGTGTTGTATTCCCTCCTATCCATATT 60.257 40.741 0.00 0.00 0.00 1.28
2070 2174 8.164070 GTGTTGTATTCCCTCCTATCCATATTT 58.836 37.037 0.00 0.00 0.00 1.40
2071 2175 9.400208 TGTTGTATTCCCTCCTATCCATATTTA 57.600 33.333 0.00 0.00 0.00 1.40
2077 2181 7.182817 TCCCTCCTATCCATATTTATTGTCG 57.817 40.000 0.00 0.00 0.00 4.35
2078 2182 5.817816 CCCTCCTATCCATATTTATTGTCGC 59.182 44.000 0.00 0.00 0.00 5.19
2079 2183 6.352222 CCCTCCTATCCATATTTATTGTCGCT 60.352 42.308 0.00 0.00 0.00 4.93
2080 2184 6.536582 CCTCCTATCCATATTTATTGTCGCTG 59.463 42.308 0.00 0.00 0.00 5.18
2081 2185 5.874810 TCCTATCCATATTTATTGTCGCTGC 59.125 40.000 0.00 0.00 0.00 5.25
2082 2186 5.877012 CCTATCCATATTTATTGTCGCTGCT 59.123 40.000 0.00 0.00 0.00 4.24
2083 2187 5.869753 ATCCATATTTATTGTCGCTGCTC 57.130 39.130 0.00 0.00 0.00 4.26
2084 2188 4.960938 TCCATATTTATTGTCGCTGCTCT 58.039 39.130 0.00 0.00 0.00 4.09
2085 2189 6.096673 TCCATATTTATTGTCGCTGCTCTA 57.903 37.500 0.00 0.00 0.00 2.43
2086 2190 5.926542 TCCATATTTATTGTCGCTGCTCTAC 59.073 40.000 0.00 0.00 0.00 2.59
2087 2191 5.928839 CCATATTTATTGTCGCTGCTCTACT 59.071 40.000 0.00 0.00 0.00 2.57
2088 2192 7.039993 TCCATATTTATTGTCGCTGCTCTACTA 60.040 37.037 0.00 0.00 0.00 1.82
2089 2193 7.274468 CCATATTTATTGTCGCTGCTCTACTAG 59.726 40.741 0.00 0.00 0.00 2.57
2090 2194 5.830000 TTTATTGTCGCTGCTCTACTAGA 57.170 39.130 0.00 0.00 0.00 2.43
2091 2195 3.980646 ATTGTCGCTGCTCTACTAGAG 57.019 47.619 8.56 8.56 45.04 2.43
2092 2196 1.669604 TGTCGCTGCTCTACTAGAGG 58.330 55.000 13.92 1.06 42.54 3.69
2093 2197 0.948678 GTCGCTGCTCTACTAGAGGG 59.051 60.000 13.92 0.00 42.54 4.30
2094 2198 0.837940 TCGCTGCTCTACTAGAGGGA 59.162 55.000 13.92 1.80 42.54 4.20
2095 2199 1.202710 TCGCTGCTCTACTAGAGGGAG 60.203 57.143 13.92 7.24 42.54 4.30
2109 2213 2.375174 AGAGGGAGTACCATGTTTTGCA 59.625 45.455 0.00 0.00 43.89 4.08
2135 2239 2.650196 GGGAATGCTTGCGTTGCA 59.350 55.556 18.03 0.79 44.95 4.08
2153 2257 4.424061 TGCAATGTTCTCATACAGTTGC 57.576 40.909 0.00 0.00 39.81 4.17
2176 2281 8.177119 TGCTTACATTTTGGTACTGATTCTTT 57.823 30.769 0.00 0.00 0.00 2.52
2178 2283 7.062255 GCTTACATTTTGGTACTGATTCTTTGC 59.938 37.037 0.00 0.00 0.00 3.68
2181 2286 7.147976 ACATTTTGGTACTGATTCTTTGCTTC 58.852 34.615 0.00 0.00 0.00 3.86
2189 2294 2.749076 TGATTCTTTGCTTCGGGACATG 59.251 45.455 0.00 0.00 0.00 3.21
2192 2297 0.962356 CTTTGCTTCGGGACATGGCT 60.962 55.000 0.00 0.00 0.00 4.75
2194 2299 0.539438 TTGCTTCGGGACATGGCTTT 60.539 50.000 0.00 0.00 0.00 3.51
2195 2300 0.539438 TGCTTCGGGACATGGCTTTT 60.539 50.000 0.00 0.00 0.00 2.27
2215 2320 0.447801 GCATGTCGAAATGCGGTTCT 59.552 50.000 24.10 0.00 43.22 3.01
2225 2330 1.174783 ATGCGGTTCTGTAGACGTCT 58.825 50.000 23.66 23.66 0.00 4.18
2255 2361 1.686052 GACTTGCCAACCAAACATGGA 59.314 47.619 1.10 0.00 39.12 3.41
2258 2364 1.327303 TGCCAACCAAACATGGAGTC 58.673 50.000 1.10 0.00 39.12 3.36
2268 2374 1.028330 ACATGGAGTCGGCATTGCTG 61.028 55.000 11.39 11.39 36.06 4.41
2280 2386 3.119884 CGGCATTGCTGTTCATCAAGTTA 60.120 43.478 9.40 0.00 0.00 2.24
2296 2402 9.642327 TCATCAAGTTAACTAACGCTTTATACA 57.358 29.630 8.92 0.00 40.96 2.29
2301 2407 8.822652 AGTTAACTAACGCTTTATACACTTGT 57.177 30.769 6.26 0.00 40.96 3.16
2303 2409 6.476243 AACTAACGCTTTATACACTTGTGG 57.524 37.500 5.72 0.00 0.00 4.17
2305 2411 2.773487 ACGCTTTATACACTTGTGGCA 58.227 42.857 5.72 0.00 0.00 4.92
2309 2415 4.494690 CGCTTTATACACTTGTGGCAGATG 60.495 45.833 5.72 0.00 0.00 2.90
2310 2416 4.635765 GCTTTATACACTTGTGGCAGATGA 59.364 41.667 4.48 0.00 0.00 2.92
2343 2449 1.671379 GTCCTTGGCCCTGACGAAC 60.671 63.158 0.00 0.00 0.00 3.95
2345 2451 1.002134 CCTTGGCCCTGACGAACAT 60.002 57.895 0.00 0.00 0.00 2.71
2352 2458 0.108615 CCCTGACGAACATTCTCGCT 60.109 55.000 0.00 0.00 42.69 4.93
2374 2480 1.374758 GACCAGTCTGTTGCGGAGG 60.375 63.158 0.00 0.00 0.00 4.30
2375 2481 2.743928 CCAGTCTGTTGCGGAGGC 60.744 66.667 0.00 0.00 40.52 4.70
2376 2482 3.114616 CAGTCTGTTGCGGAGGCG 61.115 66.667 0.00 0.00 44.10 5.52
2385 2491 4.971125 GCGGAGGCGGCCTACATC 62.971 72.222 29.89 17.28 33.03 3.06
2392 2498 1.064758 AGGCGGCCTACATCAAATTGA 60.065 47.619 22.47 0.00 28.47 2.57
2393 2499 1.334869 GGCGGCCTACATCAAATTGAG 59.665 52.381 12.87 0.00 0.00 3.02
2395 2501 2.880890 GCGGCCTACATCAAATTGAGAT 59.119 45.455 0.00 0.00 0.00 2.75
2406 2512 4.602107 TCAAATTGAGATTCCATCAGCCA 58.398 39.130 0.00 0.00 0.00 4.75
2409 2515 1.977056 TGAGATTCCATCAGCCATGC 58.023 50.000 0.00 0.00 0.00 4.06
2410 2516 1.493446 TGAGATTCCATCAGCCATGCT 59.507 47.619 0.00 0.00 40.77 3.79
2446 2552 2.690778 GCCGCTCCGCATGTCTTTT 61.691 57.895 0.00 0.00 0.00 2.27
2466 2572 5.356882 TTTTTAAGCATCTCCAACAGACG 57.643 39.130 0.00 0.00 32.26 4.18
2467 2573 2.010145 TAAGCATCTCCAACAGACGC 57.990 50.000 0.00 0.00 40.90 5.19
2468 2574 1.016130 AAGCATCTCCAACAGACGCG 61.016 55.000 3.53 3.53 45.48 6.01
2469 2575 3.084579 CATCTCCAACAGACGCGC 58.915 61.111 5.73 0.00 32.26 6.86
2470 2576 2.507102 ATCTCCAACAGACGCGCG 60.507 61.111 30.96 30.96 32.26 6.86
2471 2577 2.989881 ATCTCCAACAGACGCGCGA 61.990 57.895 39.36 10.38 32.26 5.87
2472 2578 3.470567 CTCCAACAGACGCGCGAC 61.471 66.667 39.36 31.45 0.00 5.19
2489 2595 3.429061 CGACGCGCTAAAAAGTAGTTT 57.571 42.857 5.73 0.00 0.00 2.66
2490 2596 3.143279 CGACGCGCTAAAAAGTAGTTTG 58.857 45.455 5.73 0.00 0.00 2.93
2491 2597 2.900655 GACGCGCTAAAAAGTAGTTTGC 59.099 45.455 5.73 0.00 0.00 3.68
2492 2598 2.288458 ACGCGCTAAAAAGTAGTTTGCA 59.712 40.909 5.73 0.00 0.00 4.08
2493 2599 2.902484 CGCGCTAAAAAGTAGTTTGCAG 59.098 45.455 5.56 0.00 0.00 4.41
2494 2600 2.656897 GCGCTAAAAAGTAGTTTGCAGC 59.343 45.455 14.78 14.78 35.88 5.25
2495 2601 2.902484 CGCTAAAAAGTAGTTTGCAGCG 59.098 45.455 25.00 25.00 46.40 5.18
2496 2602 2.656897 GCTAAAAAGTAGTTTGCAGCGC 59.343 45.455 0.00 0.00 31.85 5.92
2497 2603 2.861462 AAAAAGTAGTTTGCAGCGCA 57.139 40.000 11.47 0.00 36.47 6.09
2498 2604 3.369546 AAAAAGTAGTTTGCAGCGCAT 57.630 38.095 11.47 0.00 38.76 4.73
2499 2605 2.619013 AAAGTAGTTTGCAGCGCATC 57.381 45.000 11.47 0.00 38.76 3.91
2500 2606 1.813513 AAGTAGTTTGCAGCGCATCT 58.186 45.000 11.47 8.39 38.76 2.90
2501 2607 2.672961 AGTAGTTTGCAGCGCATCTA 57.327 45.000 11.47 7.61 38.76 1.98
2502 2608 3.185246 AGTAGTTTGCAGCGCATCTAT 57.815 42.857 11.47 0.00 38.76 1.98
2503 2609 3.126831 AGTAGTTTGCAGCGCATCTATC 58.873 45.455 11.47 0.00 38.76 2.08
2504 2610 0.933097 AGTTTGCAGCGCATCTATCG 59.067 50.000 11.47 0.00 38.76 2.92
2505 2611 0.652592 GTTTGCAGCGCATCTATCGT 59.347 50.000 11.47 0.00 38.76 3.73
2506 2612 0.930310 TTTGCAGCGCATCTATCGTC 59.070 50.000 11.47 0.00 38.76 4.20
2507 2613 0.103026 TTGCAGCGCATCTATCGTCT 59.897 50.000 11.47 0.00 38.76 4.18
2508 2614 0.595825 TGCAGCGCATCTATCGTCTG 60.596 55.000 11.47 0.00 35.66 3.51
2509 2615 0.596083 GCAGCGCATCTATCGTCTGT 60.596 55.000 11.47 0.00 35.31 3.41
2510 2616 1.335051 GCAGCGCATCTATCGTCTGTA 60.335 52.381 11.47 0.00 35.31 2.74
2511 2617 2.858646 GCAGCGCATCTATCGTCTGTAA 60.859 50.000 11.47 0.00 35.31 2.41
2512 2618 3.372060 CAGCGCATCTATCGTCTGTAAA 58.628 45.455 11.47 0.00 0.00 2.01
2513 2619 3.796717 CAGCGCATCTATCGTCTGTAAAA 59.203 43.478 11.47 0.00 0.00 1.52
2514 2620 4.045104 AGCGCATCTATCGTCTGTAAAAG 58.955 43.478 11.47 0.00 0.00 2.27
2515 2621 3.362110 GCGCATCTATCGTCTGTAAAAGC 60.362 47.826 0.30 0.00 0.00 3.51
2516 2622 3.121663 CGCATCTATCGTCTGTAAAAGCG 60.122 47.826 0.00 0.00 0.00 4.68
2517 2623 3.797256 GCATCTATCGTCTGTAAAAGCGT 59.203 43.478 0.00 0.00 0.00 5.07
2518 2624 4.317418 GCATCTATCGTCTGTAAAAGCGTG 60.317 45.833 0.00 0.00 0.00 5.34
2519 2625 3.766151 TCTATCGTCTGTAAAAGCGTGG 58.234 45.455 0.00 0.00 0.00 4.94
2520 2626 1.076332 ATCGTCTGTAAAAGCGTGGC 58.924 50.000 0.00 0.00 0.00 5.01
2521 2627 1.129809 CGTCTGTAAAAGCGTGGCG 59.870 57.895 0.00 0.00 0.00 5.69
2522 2628 1.495951 GTCTGTAAAAGCGTGGCGG 59.504 57.895 0.00 0.00 0.00 6.13
2523 2629 1.669760 TCTGTAAAAGCGTGGCGGG 60.670 57.895 0.00 0.00 0.00 6.13
2524 2630 3.322706 CTGTAAAAGCGTGGCGGGC 62.323 63.158 0.00 0.00 0.00 6.13
2525 2631 3.358707 GTAAAAGCGTGGCGGGCA 61.359 61.111 0.00 0.00 0.00 5.36
2526 2632 3.053291 TAAAAGCGTGGCGGGCAG 61.053 61.111 3.75 0.36 0.00 4.85
2560 2666 2.592459 CAGCCGTGCTAAAATTTAACGC 59.408 45.455 4.88 0.00 36.40 4.84
2561 2667 2.226912 AGCCGTGCTAAAATTTAACGCA 59.773 40.909 4.88 7.26 36.99 5.24
2562 2668 2.340283 GCCGTGCTAAAATTTAACGCAC 59.660 45.455 20.58 20.58 45.39 5.34
2564 2670 3.595137 GTGCTAAAATTTAACGCACGC 57.405 42.857 17.78 1.21 41.06 5.34
2565 2671 2.024759 GTGCTAAAATTTAACGCACGCG 59.975 45.455 17.78 10.36 41.06 6.01
2566 2672 1.008846 GCTAAAATTTAACGCACGCGC 60.009 47.619 12.02 0.00 44.19 6.86
2587 2693 3.118454 GCTTCAGCAGCCGCGTTA 61.118 61.111 4.92 0.00 43.65 3.18
2588 2694 2.677003 GCTTCAGCAGCCGCGTTAA 61.677 57.895 4.92 0.00 43.65 2.01
2589 2695 1.866237 CTTCAGCAGCCGCGTTAAA 59.134 52.632 4.92 0.00 45.49 1.52
2590 2696 0.237235 CTTCAGCAGCCGCGTTAAAA 59.763 50.000 4.92 0.00 45.49 1.52
2591 2697 0.878416 TTCAGCAGCCGCGTTAAAAT 59.122 45.000 4.92 0.00 45.49 1.82
2592 2698 0.167908 TCAGCAGCCGCGTTAAAATG 59.832 50.000 4.92 0.00 45.49 2.32
2593 2699 1.154035 AGCAGCCGCGTTAAAATGC 60.154 52.632 4.92 5.86 45.49 3.56
2594 2700 1.443533 GCAGCCGCGTTAAAATGCA 60.444 52.632 4.92 0.00 40.94 3.96
2595 2701 1.405469 GCAGCCGCGTTAAAATGCAG 61.405 55.000 4.92 0.00 40.94 4.41
2596 2702 1.154035 AGCCGCGTTAAAATGCAGC 60.154 52.632 4.92 6.96 43.02 5.25
2597 2703 2.849142 AGCCGCGTTAAAATGCAGCG 62.849 55.000 4.92 7.22 46.25 5.18
2598 2704 2.979036 CGCGTTAAAATGCAGCGC 59.021 55.556 0.00 0.00 44.19 5.92
2599 2705 2.979036 GCGTTAAAATGCAGCGCG 59.021 55.556 0.00 0.00 40.60 6.86
2600 2706 1.795962 GCGTTAAAATGCAGCGCGT 60.796 52.632 8.43 0.00 40.60 6.01
2601 2707 0.519586 GCGTTAAAATGCAGCGCGTA 60.520 50.000 8.43 0.00 40.60 4.42
2602 2708 1.854434 GCGTTAAAATGCAGCGCGTAT 60.854 47.619 8.43 0.00 40.60 3.06
2603 2709 2.026990 CGTTAAAATGCAGCGCGTATC 58.973 47.619 8.43 0.00 0.00 2.24
2604 2710 2.026990 GTTAAAATGCAGCGCGTATCG 58.973 47.619 8.43 0.00 42.12 2.92
2621 2727 3.965677 CGCATGAACATTGCGTACA 57.034 47.368 9.69 0.00 45.59 2.90
2622 2728 2.456942 CGCATGAACATTGCGTACAT 57.543 45.000 9.69 0.00 45.59 2.29
2623 2729 3.584095 CGCATGAACATTGCGTACATA 57.416 42.857 9.69 0.00 45.59 2.29
2624 2730 4.132529 CGCATGAACATTGCGTACATAT 57.867 40.909 9.69 0.00 45.59 1.78
2625 2731 4.526625 CGCATGAACATTGCGTACATATT 58.473 39.130 9.69 0.00 45.59 1.28
2626 2732 4.969395 CGCATGAACATTGCGTACATATTT 59.031 37.500 9.69 0.00 45.59 1.40
2627 2733 5.455201 CGCATGAACATTGCGTACATATTTT 59.545 36.000 9.69 0.00 45.59 1.82
2628 2734 6.020758 CGCATGAACATTGCGTACATATTTTT 60.021 34.615 9.69 0.00 45.59 1.94
2629 2735 7.164990 CGCATGAACATTGCGTACATATTTTTA 59.835 33.333 9.69 0.00 45.59 1.52
2630 2736 8.802856 GCATGAACATTGCGTACATATTTTTAA 58.197 29.630 0.00 0.00 0.00 1.52
2726 2832 7.477144 CATAGATAAAACTATGGTGCAACGA 57.523 36.000 0.00 0.00 43.22 3.85
2727 2833 5.796350 AGATAAAACTATGGTGCAACGAC 57.204 39.130 0.00 0.00 38.12 4.34
2728 2834 5.242434 AGATAAAACTATGGTGCAACGACA 58.758 37.500 0.00 0.00 38.12 4.35
2729 2835 5.880332 AGATAAAACTATGGTGCAACGACAT 59.120 36.000 0.00 0.00 38.12 3.06
2730 2836 7.045416 AGATAAAACTATGGTGCAACGACATA 58.955 34.615 0.00 0.00 38.12 2.29
2731 2837 5.950758 AAAACTATGGTGCAACGACATAA 57.049 34.783 0.00 0.00 38.12 1.90
2732 2838 5.950758 AAACTATGGTGCAACGACATAAA 57.049 34.783 0.00 0.00 38.12 1.40
2733 2839 5.950758 AACTATGGTGCAACGACATAAAA 57.049 34.783 0.00 0.00 38.12 1.52
2734 2840 5.950758 ACTATGGTGCAACGACATAAAAA 57.049 34.783 0.00 0.00 38.12 1.94
2770 2876 5.786401 GTGCAACTACAACCTATTCTCAG 57.214 43.478 0.00 0.00 0.00 3.35
2771 2877 5.238583 GTGCAACTACAACCTATTCTCAGT 58.761 41.667 0.00 0.00 0.00 3.41
2772 2878 5.348997 GTGCAACTACAACCTATTCTCAGTC 59.651 44.000 0.00 0.00 0.00 3.51
2773 2879 4.563184 GCAACTACAACCTATTCTCAGTCG 59.437 45.833 0.00 0.00 0.00 4.18
2774 2880 5.710984 CAACTACAACCTATTCTCAGTCGT 58.289 41.667 0.00 0.00 0.00 4.34
2775 2881 5.564048 ACTACAACCTATTCTCAGTCGTC 57.436 43.478 0.00 0.00 0.00 4.20
2776 2882 5.008331 ACTACAACCTATTCTCAGTCGTCA 58.992 41.667 0.00 0.00 0.00 4.35
2777 2883 5.652891 ACTACAACCTATTCTCAGTCGTCAT 59.347 40.000 0.00 0.00 0.00 3.06
2778 2884 5.000012 ACAACCTATTCTCAGTCGTCATC 58.000 43.478 0.00 0.00 0.00 2.92
2779 2885 4.462834 ACAACCTATTCTCAGTCGTCATCA 59.537 41.667 0.00 0.00 0.00 3.07
2780 2886 5.127845 ACAACCTATTCTCAGTCGTCATCAT 59.872 40.000 0.00 0.00 0.00 2.45
2781 2887 5.446143 ACCTATTCTCAGTCGTCATCATC 57.554 43.478 0.00 0.00 0.00 2.92
2782 2888 4.889995 ACCTATTCTCAGTCGTCATCATCA 59.110 41.667 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.772025 ACTAGCAGCACATTAAGGACTCT 59.228 43.478 0.00 0.00 0.00 3.24
46 47 5.648526 CAGTAAAGTCTACAGAGGACTAGCA 59.351 44.000 0.00 0.00 42.39 3.49
62 63 7.040686 ACAATGTTTTAATCCGCTCAGTAAAGT 60.041 33.333 0.00 0.00 0.00 2.66
69 70 3.749088 ACGACAATGTTTTAATCCGCTCA 59.251 39.130 0.00 0.00 0.00 4.26
105 177 8.891671 ACTCTAGTTACAAAATCGTGGTAAAA 57.108 30.769 0.00 0.00 0.00 1.52
160 237 9.476202 AGTGCTTTTCAAAACAGTTAATTATCC 57.524 29.630 0.00 0.00 0.00 2.59
177 254 3.503748 ACATTAGACCTGCAGTGCTTTTC 59.496 43.478 17.60 9.29 0.00 2.29
262 339 5.873179 TTTTACTGCTGGAAACTTATCGG 57.127 39.130 0.00 0.00 0.00 4.18
283 360 9.405587 CATCCGTGAAAGTTATTGTAAACATTT 57.594 29.630 0.00 0.00 0.00 2.32
425 503 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
426 504 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
427 505 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
428 506 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
429 507 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
430 508 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
431 509 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
432 510 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
433 511 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
434 512 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
435 513 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
436 514 7.096230 CCATTTTTGTGACAAGTAATTCCGAAC 60.096 37.037 0.00 0.00 0.00 3.95
437 515 6.920758 CCATTTTTGTGACAAGTAATTCCGAA 59.079 34.615 0.00 0.00 0.00 4.30
438 516 6.263392 TCCATTTTTGTGACAAGTAATTCCGA 59.737 34.615 0.00 0.00 0.00 4.55
439 517 6.442952 TCCATTTTTGTGACAAGTAATTCCG 58.557 36.000 0.00 0.00 0.00 4.30
440 518 7.872483 ACATCCATTTTTGTGACAAGTAATTCC 59.128 33.333 0.00 0.00 0.00 3.01
441 519 8.816640 ACATCCATTTTTGTGACAAGTAATTC 57.183 30.769 0.00 0.00 0.00 2.17
444 522 9.295825 AGATACATCCATTTTTGTGACAAGTAA 57.704 29.630 0.00 0.00 0.00 2.24
445 523 8.862325 AGATACATCCATTTTTGTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
446 524 7.765695 AGATACATCCATTTTTGTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
447 525 9.166173 TCTAGATACATCCATTTTTGTGACAAG 57.834 33.333 0.00 0.00 0.00 3.16
448 526 8.946085 GTCTAGATACATCCATTTTTGTGACAA 58.054 33.333 0.00 0.00 0.00 3.18
449 527 7.277760 CGTCTAGATACATCCATTTTTGTGACA 59.722 37.037 0.00 0.00 0.00 3.58
450 528 7.277981 ACGTCTAGATACATCCATTTTTGTGAC 59.722 37.037 0.00 0.00 0.00 3.67
451 529 7.327975 ACGTCTAGATACATCCATTTTTGTGA 58.672 34.615 0.00 0.00 0.00 3.58
452 530 7.539712 ACGTCTAGATACATCCATTTTTGTG 57.460 36.000 0.00 0.00 0.00 3.33
453 531 9.832445 AATACGTCTAGATACATCCATTTTTGT 57.168 29.630 0.00 0.00 0.00 2.83
478 556 9.542462 CGGAAATGGATGTAGATAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
479 557 8.920174 TCGGAAATGGATGTAGATAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
480 558 8.473358 TCGGAAATGGATGTAGATAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
481 559 7.942894 TCTCGGAAATGGATGTAGATAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
482 560 6.778069 TCTCGGAAATGGATGTAGATAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
483 561 6.864165 GTCTCGGAAATGGATGTAGATAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
484 562 6.549736 TGTCTCGGAAATGGATGTAGATAGAA 59.450 38.462 0.00 0.00 0.00 2.10
485 563 6.068670 TGTCTCGGAAATGGATGTAGATAGA 58.931 40.000 0.00 0.00 0.00 1.98
486 564 6.332735 TGTCTCGGAAATGGATGTAGATAG 57.667 41.667 0.00 0.00 0.00 2.08
487 565 6.323996 ACTTGTCTCGGAAATGGATGTAGATA 59.676 38.462 0.00 0.00 0.00 1.98
488 566 5.129485 ACTTGTCTCGGAAATGGATGTAGAT 59.871 40.000 0.00 0.00 0.00 1.98
489 567 4.466370 ACTTGTCTCGGAAATGGATGTAGA 59.534 41.667 0.00 0.00 0.00 2.59
490 568 4.759782 ACTTGTCTCGGAAATGGATGTAG 58.240 43.478 0.00 0.00 0.00 2.74
491 569 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
492 570 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
493 571 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
494 572 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
495 573 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
496 574 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
497 575 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
498 576 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
499 577 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
500 578 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
501 579 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
502 580 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
503 581 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
504 582 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
505 583 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
506 584 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
507 585 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
508 586 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
509 587 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
510 588 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
511 589 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
512 590 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
513 591 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
514 592 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
515 593 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
516 594 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
517 595 1.403323 GTAAGTACTCCCTCCGTTCGG 59.597 57.143 4.74 4.74 0.00 4.30
518 596 2.354199 GAGTAAGTACTCCCTCCGTTCG 59.646 54.545 7.17 0.00 45.33 3.95
572 650 3.270877 GTGTGGCCTAGTTGATTAGGTG 58.729 50.000 3.32 0.00 41.90 4.00
596 674 8.443176 TCTACTTTAGTCGAGGAGGGATTAATA 58.557 37.037 0.00 0.00 0.00 0.98
626 706 6.073548 GCCAAGTGATATTACTGACTGCATAC 60.074 42.308 0.16 0.00 0.00 2.39
641 721 1.901833 TGCTGAGAGTGCCAAGTGATA 59.098 47.619 0.00 0.00 0.00 2.15
645 725 2.157738 GAAATGCTGAGAGTGCCAAGT 58.842 47.619 0.00 0.00 0.00 3.16
843 939 6.000840 TGACCACAAGTATTTATGTTGAGCA 58.999 36.000 0.00 0.00 0.00 4.26
887 983 7.979786 ATACCATACCTACATAGAGGGAATG 57.020 40.000 0.00 0.00 41.36 2.67
895 997 9.302345 CAAGCGAATAATACCATACCTACATAG 57.698 37.037 0.00 0.00 0.00 2.23
896 998 8.809066 ACAAGCGAATAATACCATACCTACATA 58.191 33.333 0.00 0.00 0.00 2.29
897 999 7.602644 CACAAGCGAATAATACCATACCTACAT 59.397 37.037 0.00 0.00 0.00 2.29
898 1000 6.926826 CACAAGCGAATAATACCATACCTACA 59.073 38.462 0.00 0.00 0.00 2.74
899 1001 7.149973 TCACAAGCGAATAATACCATACCTAC 58.850 38.462 0.00 0.00 0.00 3.18
900 1002 7.292713 TCACAAGCGAATAATACCATACCTA 57.707 36.000 0.00 0.00 0.00 3.08
1069 1171 7.174426 GTCATCAGAGCAATCATGATTGGATAA 59.826 37.037 37.09 21.20 46.14 1.75
1455 1557 1.227823 TTGACTGGAACTGGTGCCG 60.228 57.895 0.00 0.00 0.00 5.69
1537 1639 0.751643 GTGTTGGAGGTGTTGGCAGT 60.752 55.000 0.00 0.00 0.00 4.40
1816 1918 6.463995 TTGTTTTCACCTTCACAAAGCTAT 57.536 33.333 0.00 0.00 0.00 2.97
1829 1931 6.272822 AGATATCCAAGCTTTGTTTTCACC 57.727 37.500 0.00 0.00 0.00 4.02
1832 1934 9.521503 GGAAATAGATATCCAAGCTTTGTTTTC 57.478 33.333 0.00 0.00 35.71 2.29
1833 1935 9.034800 TGGAAATAGATATCCAAGCTTTGTTTT 57.965 29.630 0.00 0.00 42.61 2.43
1863 1966 1.791103 TAACAGCAAAGTGGCGCCAC 61.791 55.000 45.27 45.27 46.50 5.01
1868 1971 2.162408 GAGGACATAACAGCAAAGTGGC 59.838 50.000 0.00 0.00 0.00 5.01
1871 1974 4.357918 ACAGAGGACATAACAGCAAAGT 57.642 40.909 0.00 0.00 0.00 2.66
1885 1988 6.495181 CAGAAAAGGGCTATCTATACAGAGGA 59.505 42.308 0.00 0.00 33.22 3.71
1888 1991 7.202011 GGAACAGAAAAGGGCTATCTATACAGA 60.202 40.741 0.00 0.00 34.56 3.41
1899 2002 2.755952 ACAAGGAACAGAAAAGGGCT 57.244 45.000 0.00 0.00 0.00 5.19
1922 2025 4.013050 GCCAGAGCAGAAGAGGTAAAAAT 58.987 43.478 0.00 0.00 39.53 1.82
1924 2027 2.290323 GGCCAGAGCAGAAGAGGTAAAA 60.290 50.000 0.00 0.00 42.56 1.52
1927 2030 0.041833 AGGCCAGAGCAGAAGAGGTA 59.958 55.000 5.01 0.00 42.56 3.08
1928 2031 0.839853 AAGGCCAGAGCAGAAGAGGT 60.840 55.000 5.01 0.00 42.56 3.85
1932 2035 2.419851 CCTCTAAAGGCCAGAGCAGAAG 60.420 54.545 12.18 0.00 42.56 2.85
1949 2052 0.764890 TACAGCAAACCACAGCCTCT 59.235 50.000 0.00 0.00 0.00 3.69
2014 2117 8.097662 ACCACAACAAAAGGAAAATTACAAAGA 58.902 29.630 0.00 0.00 0.00 2.52
2036 2139 2.039879 AGGGAATACAACACCTGACCAC 59.960 50.000 0.00 0.00 30.71 4.16
2051 2155 8.267894 CGACAATAAATATGGATAGGAGGGAAT 58.732 37.037 0.00 0.00 0.00 3.01
2052 2156 7.620880 CGACAATAAATATGGATAGGAGGGAA 58.379 38.462 0.00 0.00 0.00 3.97
2053 2157 6.351881 GCGACAATAAATATGGATAGGAGGGA 60.352 42.308 0.00 0.00 0.00 4.20
2054 2158 5.817816 GCGACAATAAATATGGATAGGAGGG 59.182 44.000 0.00 0.00 0.00 4.30
2055 2159 6.536582 CAGCGACAATAAATATGGATAGGAGG 59.463 42.308 0.00 0.00 0.00 4.30
2056 2160 6.036517 GCAGCGACAATAAATATGGATAGGAG 59.963 42.308 0.00 0.00 0.00 3.69
2057 2161 5.874810 GCAGCGACAATAAATATGGATAGGA 59.125 40.000 0.00 0.00 0.00 2.94
2058 2162 5.877012 AGCAGCGACAATAAATATGGATAGG 59.123 40.000 0.00 0.00 0.00 2.57
2059 2163 6.815641 AGAGCAGCGACAATAAATATGGATAG 59.184 38.462 0.00 0.00 0.00 2.08
2060 2164 6.701340 AGAGCAGCGACAATAAATATGGATA 58.299 36.000 0.00 0.00 0.00 2.59
2061 2165 5.555017 AGAGCAGCGACAATAAATATGGAT 58.445 37.500 0.00 0.00 0.00 3.41
2062 2166 4.960938 AGAGCAGCGACAATAAATATGGA 58.039 39.130 0.00 0.00 0.00 3.41
2063 2167 5.928839 AGTAGAGCAGCGACAATAAATATGG 59.071 40.000 0.00 0.00 0.00 2.74
2064 2168 8.023706 TCTAGTAGAGCAGCGACAATAAATATG 58.976 37.037 0.00 0.00 0.00 1.78
2065 2169 8.112016 TCTAGTAGAGCAGCGACAATAAATAT 57.888 34.615 0.00 0.00 0.00 1.28
2066 2170 7.308649 CCTCTAGTAGAGCAGCGACAATAAATA 60.309 40.741 20.10 0.00 40.98 1.40
2067 2171 6.392625 TCTAGTAGAGCAGCGACAATAAAT 57.607 37.500 0.00 0.00 0.00 1.40
2068 2172 5.221067 CCTCTAGTAGAGCAGCGACAATAAA 60.221 44.000 20.10 0.00 40.98 1.40
2069 2173 4.276183 CCTCTAGTAGAGCAGCGACAATAA 59.724 45.833 20.10 0.00 40.98 1.40
2070 2174 3.815962 CCTCTAGTAGAGCAGCGACAATA 59.184 47.826 20.10 0.00 40.98 1.90
2071 2175 2.621055 CCTCTAGTAGAGCAGCGACAAT 59.379 50.000 20.10 0.00 40.98 2.71
2072 2176 2.017782 CCTCTAGTAGAGCAGCGACAA 58.982 52.381 20.10 0.00 40.98 3.18
2073 2177 1.669604 CCTCTAGTAGAGCAGCGACA 58.330 55.000 20.10 0.00 40.98 4.35
2074 2178 0.948678 CCCTCTAGTAGAGCAGCGAC 59.051 60.000 20.10 0.00 40.98 5.19
2075 2179 0.837940 TCCCTCTAGTAGAGCAGCGA 59.162 55.000 20.10 10.10 40.98 4.93
2076 2180 1.234821 CTCCCTCTAGTAGAGCAGCG 58.765 60.000 20.10 7.74 40.98 5.18
2077 2181 2.358322 ACTCCCTCTAGTAGAGCAGC 57.642 55.000 20.10 0.00 40.98 5.25
2078 2182 3.136809 TGGTACTCCCTCTAGTAGAGCAG 59.863 52.174 20.10 18.39 40.98 4.24
2079 2183 3.120898 TGGTACTCCCTCTAGTAGAGCA 58.879 50.000 20.10 9.03 40.98 4.26
2080 2184 3.860968 TGGTACTCCCTCTAGTAGAGC 57.139 52.381 20.10 6.66 40.98 4.09
2081 2185 5.313280 ACATGGTACTCCCTCTAGTAGAG 57.687 47.826 18.81 18.81 41.96 2.43
2082 2186 5.728937 AACATGGTACTCCCTCTAGTAGA 57.271 43.478 0.00 0.00 32.69 2.59
2083 2187 6.574350 CAAAACATGGTACTCCCTCTAGTAG 58.426 44.000 0.00 0.00 32.69 2.57
2084 2188 5.105064 GCAAAACATGGTACTCCCTCTAGTA 60.105 44.000 0.00 0.00 0.00 1.82
2085 2189 4.323562 GCAAAACATGGTACTCCCTCTAGT 60.324 45.833 0.00 0.00 0.00 2.57
2086 2190 4.192317 GCAAAACATGGTACTCCCTCTAG 58.808 47.826 0.00 0.00 0.00 2.43
2087 2191 3.585289 TGCAAAACATGGTACTCCCTCTA 59.415 43.478 0.00 0.00 0.00 2.43
2088 2192 2.375174 TGCAAAACATGGTACTCCCTCT 59.625 45.455 0.00 0.00 0.00 3.69
2089 2193 2.749621 CTGCAAAACATGGTACTCCCTC 59.250 50.000 0.00 0.00 0.00 4.30
2090 2194 2.795329 CTGCAAAACATGGTACTCCCT 58.205 47.619 0.00 0.00 0.00 4.20
2091 2195 1.202348 GCTGCAAAACATGGTACTCCC 59.798 52.381 0.00 0.00 0.00 4.30
2092 2196 2.162408 GAGCTGCAAAACATGGTACTCC 59.838 50.000 1.02 0.00 0.00 3.85
2093 2197 3.077359 AGAGCTGCAAAACATGGTACTC 58.923 45.455 1.02 0.00 0.00 2.59
2094 2198 3.146104 AGAGCTGCAAAACATGGTACT 57.854 42.857 1.02 0.00 0.00 2.73
2095 2199 3.923017 AAGAGCTGCAAAACATGGTAC 57.077 42.857 1.02 0.00 0.00 3.34
2109 2213 1.457346 CAAGCATTCCCGAAAGAGCT 58.543 50.000 0.00 0.00 0.00 4.09
2135 2239 7.928307 ATGTAAGCAACTGTATGAGAACATT 57.072 32.000 0.00 0.00 37.87 2.71
2153 2257 8.299570 AGCAAAGAATCAGTACCAAAATGTAAG 58.700 33.333 0.00 0.00 0.00 2.34
2176 2281 0.539438 AAAAGCCATGTCCCGAAGCA 60.539 50.000 0.00 0.00 0.00 3.91
2178 2283 0.109132 GCAAAAGCCATGTCCCGAAG 60.109 55.000 0.00 0.00 0.00 3.79
2181 2286 0.458889 CATGCAAAAGCCATGTCCCG 60.459 55.000 0.00 0.00 36.26 5.14
2206 2311 1.135373 CAGACGTCTACAGAACCGCAT 60.135 52.381 19.57 0.00 0.00 4.73
2213 2318 2.085320 GAGAAGGCAGACGTCTACAGA 58.915 52.381 19.57 0.00 38.07 3.41
2215 2320 0.803117 CGAGAAGGCAGACGTCTACA 59.197 55.000 19.57 0.00 38.07 2.74
2225 2330 2.050836 TTGGCAAGTCCGAGAAGGCA 62.051 55.000 0.00 0.00 40.77 4.75
2255 2361 1.089920 GATGAACAGCAATGCCGACT 58.910 50.000 0.00 0.00 0.00 4.18
2258 2364 1.200716 ACTTGATGAACAGCAATGCCG 59.799 47.619 0.00 0.00 36.03 5.69
2280 2386 5.106830 GCCACAAGTGTATAAAGCGTTAGTT 60.107 40.000 0.00 0.00 0.00 2.24
2295 2401 1.132453 CATGCTCATCTGCCACAAGTG 59.868 52.381 0.00 0.00 0.00 3.16
2296 2402 1.271762 ACATGCTCATCTGCCACAAGT 60.272 47.619 0.00 0.00 0.00 3.16
2301 2407 1.317431 GCCAACATGCTCATCTGCCA 61.317 55.000 0.00 0.00 0.00 4.92
2303 2409 1.317431 TGGCCAACATGCTCATCTGC 61.317 55.000 0.61 0.00 0.00 4.26
2305 2411 1.028330 CGTGGCCAACATGCTCATCT 61.028 55.000 7.24 0.00 0.00 2.90
2309 2415 2.672996 ACCGTGGCCAACATGCTC 60.673 61.111 7.24 0.00 34.66 4.26
2310 2416 2.672996 GACCGTGGCCAACATGCT 60.673 61.111 7.24 0.00 34.66 3.79
2352 2458 0.878523 CCGCAACAGACTGGTCGAAA 60.879 55.000 7.51 0.00 34.09 3.46
2374 2480 2.288666 TCTCAATTTGATGTAGGCCGC 58.711 47.619 0.00 0.00 0.00 6.53
2375 2481 4.023707 GGAATCTCAATTTGATGTAGGCCG 60.024 45.833 0.00 0.00 0.00 6.13
2376 2482 4.889409 TGGAATCTCAATTTGATGTAGGCC 59.111 41.667 0.00 0.00 0.00 5.19
2384 2490 4.602107 TGGCTGATGGAATCTCAATTTGA 58.398 39.130 0.00 0.00 45.81 2.69
2385 2491 4.994907 TGGCTGATGGAATCTCAATTTG 57.005 40.909 0.00 0.00 45.81 2.32
2392 2498 1.202903 GGAGCATGGCTGATGGAATCT 60.203 52.381 0.00 0.00 45.81 2.40
2393 2499 1.245732 GGAGCATGGCTGATGGAATC 58.754 55.000 0.00 0.00 45.83 2.52
2395 2501 0.106868 CTGGAGCATGGCTGATGGAA 60.107 55.000 0.00 0.00 39.88 3.53
2452 2558 2.792290 CGCGCGTCTGTTGGAGATG 61.792 63.158 24.19 0.00 40.33 2.90
2453 2559 2.507102 CGCGCGTCTGTTGGAGAT 60.507 61.111 24.19 0.00 31.63 2.75
2454 2560 3.666253 TCGCGCGTCTGTTGGAGA 61.666 61.111 30.98 2.41 0.00 3.71
2455 2561 3.470567 GTCGCGCGTCTGTTGGAG 61.471 66.667 30.98 0.00 0.00 3.86
2469 2575 3.143279 CAAACTACTTTTTAGCGCGTCG 58.857 45.455 8.43 0.00 0.00 5.12
2470 2576 2.900655 GCAAACTACTTTTTAGCGCGTC 59.099 45.455 8.43 0.00 0.00 5.19
2471 2577 2.288458 TGCAAACTACTTTTTAGCGCGT 59.712 40.909 8.43 0.00 0.00 6.01
2472 2578 2.902484 CTGCAAACTACTTTTTAGCGCG 59.098 45.455 0.00 0.00 0.00 6.86
2473 2579 2.656897 GCTGCAAACTACTTTTTAGCGC 59.343 45.455 0.00 0.00 29.70 5.92
2474 2580 2.902484 CGCTGCAAACTACTTTTTAGCG 59.098 45.455 0.00 0.00 44.88 4.26
2475 2581 2.656897 GCGCTGCAAACTACTTTTTAGC 59.343 45.455 0.00 0.00 33.98 3.09
2476 2582 3.884169 TGCGCTGCAAACTACTTTTTAG 58.116 40.909 9.73 0.00 34.76 1.85
2477 2583 3.972950 TGCGCTGCAAACTACTTTTTA 57.027 38.095 9.73 0.00 34.76 1.52
2478 2584 2.861462 TGCGCTGCAAACTACTTTTT 57.139 40.000 9.73 0.00 34.76 1.94
2479 2585 2.554032 AGATGCGCTGCAAACTACTTTT 59.446 40.909 9.73 0.00 43.62 2.27
2480 2586 2.154462 AGATGCGCTGCAAACTACTTT 58.846 42.857 9.73 0.00 43.62 2.66
2481 2587 1.813513 AGATGCGCTGCAAACTACTT 58.186 45.000 9.73 0.00 43.62 2.24
2482 2588 2.672961 TAGATGCGCTGCAAACTACT 57.327 45.000 9.73 5.50 43.62 2.57
2483 2589 2.097202 CGATAGATGCGCTGCAAACTAC 60.097 50.000 9.73 11.82 43.62 2.73
2484 2590 2.127251 CGATAGATGCGCTGCAAACTA 58.873 47.619 9.73 12.76 43.62 2.24
2485 2591 0.933097 CGATAGATGCGCTGCAAACT 59.067 50.000 9.73 11.32 43.62 2.66
2486 2592 0.652592 ACGATAGATGCGCTGCAAAC 59.347 50.000 9.73 5.46 40.67 2.93
2487 2593 0.930310 GACGATAGATGCGCTGCAAA 59.070 50.000 9.73 0.00 40.67 3.68
2488 2594 0.103026 AGACGATAGATGCGCTGCAA 59.897 50.000 9.73 0.00 40.67 4.08
2489 2595 0.595825 CAGACGATAGATGCGCTGCA 60.596 55.000 9.73 5.73 41.35 4.41
2490 2596 0.596083 ACAGACGATAGATGCGCTGC 60.596 55.000 9.73 0.00 36.82 5.25
2491 2597 2.688364 TACAGACGATAGATGCGCTG 57.312 50.000 9.73 0.00 38.18 5.18
2492 2598 3.710326 TTTACAGACGATAGATGCGCT 57.290 42.857 9.73 0.00 41.38 5.92
2493 2599 3.362110 GCTTTTACAGACGATAGATGCGC 60.362 47.826 0.00 0.00 41.38 6.09
2494 2600 3.121663 CGCTTTTACAGACGATAGATGCG 60.122 47.826 0.00 0.00 41.38 4.73
2495 2601 3.797256 ACGCTTTTACAGACGATAGATGC 59.203 43.478 0.00 0.00 41.38 3.91
2496 2602 4.207224 CCACGCTTTTACAGACGATAGATG 59.793 45.833 0.00 0.00 41.38 2.90
2497 2603 4.360563 CCACGCTTTTACAGACGATAGAT 58.639 43.478 0.00 0.00 41.38 1.98
2498 2604 3.766151 CCACGCTTTTACAGACGATAGA 58.234 45.455 0.00 0.00 41.38 1.98
2499 2605 2.281762 GCCACGCTTTTACAGACGATAG 59.718 50.000 0.00 0.00 46.19 2.08
2500 2606 2.264813 GCCACGCTTTTACAGACGATA 58.735 47.619 0.00 0.00 0.00 2.92
2501 2607 1.076332 GCCACGCTTTTACAGACGAT 58.924 50.000 0.00 0.00 0.00 3.73
2502 2608 1.279527 CGCCACGCTTTTACAGACGA 61.280 55.000 0.00 0.00 0.00 4.20
2503 2609 1.129809 CGCCACGCTTTTACAGACG 59.870 57.895 0.00 0.00 0.00 4.18
2504 2610 1.495951 CCGCCACGCTTTTACAGAC 59.504 57.895 0.00 0.00 0.00 3.51
2505 2611 1.669760 CCCGCCACGCTTTTACAGA 60.670 57.895 0.00 0.00 0.00 3.41
2506 2612 2.867472 CCCGCCACGCTTTTACAG 59.133 61.111 0.00 0.00 0.00 2.74
2507 2613 3.358707 GCCCGCCACGCTTTTACA 61.359 61.111 0.00 0.00 0.00 2.41
2508 2614 3.322706 CTGCCCGCCACGCTTTTAC 62.323 63.158 0.00 0.00 0.00 2.01
2509 2615 3.053291 CTGCCCGCCACGCTTTTA 61.053 61.111 0.00 0.00 0.00 1.52
2538 2644 2.592459 CGTTAAATTTTAGCACGGCTGC 59.408 45.455 8.44 0.00 44.63 5.25
2539 2645 2.592459 GCGTTAAATTTTAGCACGGCTG 59.408 45.455 12.72 0.00 40.10 4.85
2540 2646 2.226912 TGCGTTAAATTTTAGCACGGCT 59.773 40.909 12.72 3.87 43.41 5.52
2541 2647 2.340283 GTGCGTTAAATTTTAGCACGGC 59.660 45.455 21.07 11.33 46.54 5.68
2545 2651 2.235020 CGCGTGCGTTAAATTTTAGCA 58.765 42.857 6.00 9.76 35.27 3.49
2546 2652 1.008846 GCGCGTGCGTTAAATTTTAGC 60.009 47.619 16.27 0.61 42.09 3.09
2547 2653 2.925224 GCGCGTGCGTTAAATTTTAG 57.075 45.000 16.27 0.00 42.09 1.85
2559 2665 4.196826 CTGAAGCTACGCGCGTGC 62.197 66.667 42.78 37.75 45.59 5.34
2560 2666 4.196826 GCTGAAGCTACGCGCGTG 62.197 66.667 42.78 31.34 45.59 5.34
2561 2667 4.717629 TGCTGAAGCTACGCGCGT 62.718 61.111 39.05 39.05 45.59 6.01
2562 2668 3.906649 CTGCTGAAGCTACGCGCG 61.907 66.667 30.96 30.96 45.59 6.86
2571 2677 0.237235 TTTTAACGCGGCTGCTGAAG 59.763 50.000 17.03 7.73 39.65 3.02
2572 2678 0.878416 ATTTTAACGCGGCTGCTGAA 59.122 45.000 17.03 3.66 39.65 3.02
2573 2679 0.167908 CATTTTAACGCGGCTGCTGA 59.832 50.000 17.03 0.00 39.65 4.26
2574 2680 1.405469 GCATTTTAACGCGGCTGCTG 61.405 55.000 17.03 11.74 39.65 4.41
2575 2681 1.154035 GCATTTTAACGCGGCTGCT 60.154 52.632 17.03 0.00 39.65 4.24
2576 2682 1.405469 CTGCATTTTAACGCGGCTGC 61.405 55.000 12.47 7.70 37.91 5.25
2577 2683 2.640684 CTGCATTTTAACGCGGCTG 58.359 52.632 12.47 2.12 0.00 4.85
2580 2686 2.496257 GCGCTGCATTTTAACGCGG 61.496 57.895 12.47 0.00 43.59 6.46
2581 2687 2.979036 GCGCTGCATTTTAACGCG 59.021 55.556 3.53 3.53 45.88 6.01
2582 2688 0.519586 TACGCGCTGCATTTTAACGC 60.520 50.000 5.73 0.00 45.72 4.84
2583 2689 2.026990 GATACGCGCTGCATTTTAACG 58.973 47.619 5.73 0.00 0.00 3.18
2584 2690 2.026990 CGATACGCGCTGCATTTTAAC 58.973 47.619 5.73 0.00 0.00 2.01
2585 2691 2.361094 CGATACGCGCTGCATTTTAA 57.639 45.000 5.73 0.00 0.00 1.52
2587 2693 4.974468 CGATACGCGCTGCATTTT 57.026 50.000 5.73 0.00 0.00 1.82
2604 2710 6.810888 AAAATATGTACGCAATGTTCATGC 57.189 33.333 0.00 0.00 38.79 4.06
2699 2805 8.988934 CGTTGCACCATAGTTTTATCTATGTAT 58.011 33.333 11.16 0.00 43.12 2.29
2700 2806 8.198778 TCGTTGCACCATAGTTTTATCTATGTA 58.801 33.333 11.16 0.00 43.12 2.29
2701 2807 7.011109 GTCGTTGCACCATAGTTTTATCTATGT 59.989 37.037 11.16 0.48 43.12 2.29
2702 2808 7.011016 TGTCGTTGCACCATAGTTTTATCTATG 59.989 37.037 6.71 6.71 43.81 2.23
2703 2809 7.045416 TGTCGTTGCACCATAGTTTTATCTAT 58.955 34.615 0.00 0.00 0.00 1.98
2704 2810 6.399743 TGTCGTTGCACCATAGTTTTATCTA 58.600 36.000 0.00 0.00 0.00 1.98
2705 2811 5.242434 TGTCGTTGCACCATAGTTTTATCT 58.758 37.500 0.00 0.00 0.00 1.98
2706 2812 5.539582 TGTCGTTGCACCATAGTTTTATC 57.460 39.130 0.00 0.00 0.00 1.75
2707 2813 7.618502 TTATGTCGTTGCACCATAGTTTTAT 57.381 32.000 0.00 0.00 0.00 1.40
2708 2814 7.436430 TTTATGTCGTTGCACCATAGTTTTA 57.564 32.000 0.00 0.00 0.00 1.52
2709 2815 5.950758 TTATGTCGTTGCACCATAGTTTT 57.049 34.783 0.00 0.00 0.00 2.43
2710 2816 5.950758 TTTATGTCGTTGCACCATAGTTT 57.049 34.783 0.00 0.00 0.00 2.66
2711 2817 5.950758 TTTTATGTCGTTGCACCATAGTT 57.049 34.783 0.00 0.00 0.00 2.24
2712 2818 5.950758 TTTTTATGTCGTTGCACCATAGT 57.049 34.783 0.00 0.00 0.00 2.12
2733 2839 9.991906 TTGTAGTTGCACTATCTAGTAGTTTTT 57.008 29.630 0.00 0.00 41.73 1.94
2734 2840 9.420551 GTTGTAGTTGCACTATCTAGTAGTTTT 57.579 33.333 0.00 0.00 41.73 2.43
2735 2841 8.033626 GGTTGTAGTTGCACTATCTAGTAGTTT 58.966 37.037 0.00 0.00 41.73 2.66
2736 2842 7.396623 AGGTTGTAGTTGCACTATCTAGTAGTT 59.603 37.037 0.00 0.00 41.73 2.24
2737 2843 6.890814 AGGTTGTAGTTGCACTATCTAGTAGT 59.109 38.462 0.00 0.00 44.49 2.73
2738 2844 7.336161 AGGTTGTAGTTGCACTATCTAGTAG 57.664 40.000 0.00 0.00 32.65 2.57
2739 2845 8.991783 ATAGGTTGTAGTTGCACTATCTAGTA 57.008 34.615 0.00 0.00 32.65 1.82
2740 2846 7.899648 ATAGGTTGTAGTTGCACTATCTAGT 57.100 36.000 0.00 0.00 32.65 2.57
2741 2847 8.634444 AGAATAGGTTGTAGTTGCACTATCTAG 58.366 37.037 0.00 0.00 32.65 2.43
2742 2848 8.534954 AGAATAGGTTGTAGTTGCACTATCTA 57.465 34.615 0.00 0.00 32.65 1.98
2743 2849 7.124298 TGAGAATAGGTTGTAGTTGCACTATCT 59.876 37.037 0.00 0.00 32.65 1.98
2744 2850 7.265673 TGAGAATAGGTTGTAGTTGCACTATC 58.734 38.462 0.00 0.00 32.65 2.08
2745 2851 7.093289 ACTGAGAATAGGTTGTAGTTGCACTAT 60.093 37.037 0.00 0.00 32.65 2.12
2746 2852 6.210784 ACTGAGAATAGGTTGTAGTTGCACTA 59.789 38.462 0.00 0.00 0.00 2.74
2747 2853 5.012148 ACTGAGAATAGGTTGTAGTTGCACT 59.988 40.000 0.00 0.00 0.00 4.40
2748 2854 5.238583 ACTGAGAATAGGTTGTAGTTGCAC 58.761 41.667 0.00 0.00 0.00 4.57
2749 2855 5.479306 GACTGAGAATAGGTTGTAGTTGCA 58.521 41.667 0.00 0.00 0.00 4.08
2750 2856 4.563184 CGACTGAGAATAGGTTGTAGTTGC 59.437 45.833 0.00 0.00 0.00 4.17
2751 2857 5.710984 ACGACTGAGAATAGGTTGTAGTTG 58.289 41.667 0.00 0.00 0.00 3.16
2752 2858 5.475909 TGACGACTGAGAATAGGTTGTAGTT 59.524 40.000 0.00 0.00 0.00 2.24
2753 2859 5.008331 TGACGACTGAGAATAGGTTGTAGT 58.992 41.667 0.00 0.00 0.00 2.73
2754 2860 5.562506 TGACGACTGAGAATAGGTTGTAG 57.437 43.478 0.00 0.00 0.00 2.74
2755 2861 5.650703 TGATGACGACTGAGAATAGGTTGTA 59.349 40.000 0.00 0.00 0.00 2.41
2756 2862 4.462834 TGATGACGACTGAGAATAGGTTGT 59.537 41.667 0.00 0.00 0.00 3.32
2757 2863 4.998788 TGATGACGACTGAGAATAGGTTG 58.001 43.478 0.00 0.00 0.00 3.77
2758 2864 5.360999 TGATGATGACGACTGAGAATAGGTT 59.639 40.000 0.00 0.00 0.00 3.50
2759 2865 4.889995 TGATGATGACGACTGAGAATAGGT 59.110 41.667 0.00 0.00 0.00 3.08
2760 2866 5.444663 TGATGATGACGACTGAGAATAGG 57.555 43.478 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.