>input_sequence_69008
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-------------------------------------------------------------ATGTGGAGTTTTGCATCAA
ATGCCATAGCTGGAAGCATAAAGAAAAAGGTACAACCATCAAAAGGCAGCTTATCCAATCATGATTGCTCTGATGACGAT
GGTTCTTCATGTGCAAGTCGAGAGGAAGGCCTTGAATGCCCAATTTGCTGTGAATCCTTCAACATCGTAGAGAACGTTCC
TTATGTCTTGTGGTGTGGTCACACAATGTGCAAGAACTGCATCTTAGGTCTTCAGTGGGCTGTTGTCAAGTTCCCAACCC
TTCCTATCCAGCTGCCTCTCTTTGTCTCGTGTCCTTGGTGCAACCTATTATCTTTCCGGCTGGTGTACAAGGGCAACCTC
AAGTTCCCACGTAAGAACTACTTTCTGCTGTGGATGGTTGAGAGCATGAATGGTGACAGAGCAAAGTTCCATTCCTCTGG
TCATGAAGAGCGCCAATCAGTATGTCCCTCCAGTGGCGGCACCAGTTCCAGTCAACACCACCGAAGAACCCCTACGGCAC
GAGCAGAGACCTCCTCTTCTGCCAGAGATAGAAATGCCACTGCCAACACCTCCAACACTGCCAGCGTGTCTCTCCAAAAG
CTTATGGTGTGCTTCGTGCAGCTGACGGCCAAGTTCCCGCTCGTGATAATGTTCCTCCTCATAGTTCTCTACGCCGTCCC
TGCCAGCGCCGCGGTTCTGCTCCTGTACGTCCTTGTCACGTTTTTGTTTGCGCTGCCGTCGTTTCTGATCCTCTACTTTG
CTTATCCCACCTTGGACTGGCTCGTGAGAGAGATATTCACTTGA------------------------------------
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>chr4A_1_TraesCS4A01G053400
GGCTATAACTATTCTTGCCTAGGATCCAAAAGAGTCCTTAATGTGCTGCTAGTCCTCTGTAGACTTTACTGAGCGGATTA
AAACATTGTCGTGATAATTT------------------------------------------------------------
-----------AGTTATTTTACCACGATTTTGTAACTAGA--GTAATTTCTTCTAGTTTATATGTTACG---GTAGGGAT
AATTAACTGTTTTGAAAAGCACTGCAGGTCTAATGTGATAGCACACATGTAGTTTATCTAAACAGTTCTTATCTAAAACT
AGTGAATGATGCTCCTTCCCGATAAGTTTCCAGCAGTAAAAATGTTTACAATAACTTTCACGGATGAATTCCTGCTTGCC
GAGTTTCTCACCTTCTTTAGATACCACGGTTATTGTCAATTTATTTATTAGTTTTTTT-ATTAGAGAAGTGCTATATGTA
CTGAAAAATCTGTACAAATTAAGTACTCCCTCCGTTCGGAATTACTTGTCACAAAAATGGATGTATCTAGACGTATTTTA
GTTCTATCTACATCCATTTCCGAGACAAGTAATTCCGAACGGAGGGAGTACTTACTCAGGGTAGCTACAAAGCCGACTGA
GAAAATCGCCACCTAATCAACTAGGCCACACATTATTAATCCCTCCTC--GACTAAAGTAGATACGTATGCAGTCAGTAA
TATCACTTGGCACTCTCAGCATTTCTGTGTTTGTTATGTGGTTTCTGAAATAGCTAATGCACAGGGAAACTGTATC--AT
TGTTCTAAAAAATAAACATGATTATGTAGTTAATATGACTCATTGCCTGTCTTGTCAATTGGTTGTTTACTTGAT-TTTT
TATGGACTGCTGGCTTTATTTCATTT---ATGAGAGCATTTCAC----------TTTTTGCTCAACATAAATACTTGTGG
TCAGTTTTACTGGAGAAATTGGCATTCCC------TCTATGTAGGTATGGTATTATTCGCTTGTGAGGCATTCTGATTTT
TTGCTGTACATCAGGACTGCAGATGCACAAAACATAGTGTACCAGCTCTTCCTCACTCAACATGTGGAGTTTTGCATCAA
ATGCCATAGCTGGAAGCATAAAGAAAAAGGTACAACCATCAAAAGGCAGCTTATCCAATCATGATTGCTCTGATGACGAT
GGTTCTTCATGTGCAAGTCGAGAGGAAGGCCTTGAATGCCCAATTTGCTGTGAATCCTTCAACATCGTAGAGAACGTTCC
TTATGTCTTGTGGTGTGGTCACACAATGTGCAAGAACTGCATCTTAGGTCTTCAGTGGGCTGTTGTCAAGTTCCCAACCC
TTCCTATCCAGCTGCCTCTCTTTGTCTCGTGTCCTTGGTGCAACCTATTATCTTTCCGGCTGGTGTACAAGGGCAACCTC
AAGTTCCCACGTAAGAACTACTTTCTGCTGTGGATGGTTGAGAGCATGAATGGTGACAGAGCAAAGTTCCATTCCTCTGG
TCATGAAGAGCGCCAATCAGTATGTCCCTCCAGTGGCGGCACCAGTTCCAGTCAACACCACCGAAGAACCCCTACGGCAC
GAGCAGAGACCTCCTCTTCTGCCAGAGATAGAAATGCCACTGCCAACACCTCCAACACTGCCAGCGTGTCTCTCCAAAAG
CTTATGGTGTGCTTCGTGCAGCTGACGGCCAAGTTCCCGCTCGTGATAATGTTCCTCCTCATAGTTCTCTACGCCGTCCC
TGCCAGCGCCGCGGTTCTGCTCCTGTACGTCCTTGTCACGTTTTTGTTTGCGCTGCCGTCGTTTCTGATCCTCTACTTTG
CTTATCCCACCTTGGACTGGCTCGTGAGAGAGATATTCACTTGAGCCGTGCTGTTCTGAAATGTAAGTACAGTTTATATA
GCTTTGTGAAGGTGAAAACAAAGCTT-GGATATCTATTTCCATCCGTGGCGCCACTTTGCTGTTATGTCCTCTGTATAGA
TAGCCCTTTTCTGTTCCTTGTTTTATTTTTACCTCTTCTGCTCTGGCCTTTAGAGGCTGTGGTTTGCTGTAACTGTCTGC
TCATTGAAATGTTGTTCTTGTTCATGAGTGCCCCAATCTTTGTAATTTTCCTTTTGTTGTGGTCAGGTG-TTGTATTCCC
TCCTATCCATATTTATTGTCGCTGCTCTACTAGAGGGAGTACCATGTTTTGCAGCTCTTTCGGGAATGCTTGCGTTGCAA
TGTTCTCATACAGTTGCTTACATTTTGG-TACTGATTCTTTGCTTCGGGACATGGCTTTTGCATGTCGAAATGCGGTTCT
GTAGACGTCTGCCTTCTCGGACTTGCC-AACCAAACATGGAGTCGGCATTGCTGTTCATCAAGTTAACTAACGCTTTATA
CACTTGTGGCAGATGAGCATGTTGGCCACGGTCCTTGGCCCTGACGAACATTCTCGCTTTCGACCAGTCTGTTGCGGAGG
CGGCCTACATCAAATTGAGATTCCATCAGCCATGCTCCAGCGTGTGCGGTCCGGCCGCTCCGCATGTCTTTTTTAAGCAT
CTCCAACAGACGCGCGACGCGCTAAAAAGTAGTTTGCAGCGCATCTATCGTCTGTAAAAGCGTGGCGGGCAGCGCTGGCT
TCAGCAGCCGTGCTAAAATTTAACGCACGCGCGTAGCTTCAGCAGCCGCGTTAAAATGCAGCGCGTATCGCATGAACATT
GCGTACATATTTTTAAATAAAAACGATACTAAATAAAATTCATAGATAAAAACGATACATATATATTTTACATAGTTTCA
CAGTATACATAGATAAAACTATGGTGCAACGACATAAAAAAAACTACTAGATAGTGCAACTACAACCTATTCTCAGTCGT
CATCATCA
>chr4D_1
GGCTATAACTATTCTTGCCTAGGATCCAAAGGAGTCCTTAATGTGCAGCTAGTCCTCTGTAGGCTTTACCGAGCGGATTA
AAACAATGTGTTGATAATATTTATTTTCCATTAGTGTGCAGTAAGCTCAGATGATTTCTTACATAACCCATAGGCCATAG
TAGATCTCCTCAGTTAATTTACCATGATTTTGTAACTCTAGGGTAGTTTCTTCTAGTTTATATGTTACG---TTAGTGAT
AACTAACTGTTTGAAAAGCAACTGCAGGTCTAATGTGATAACATACATGTAGTTTGTCTAAACAGTTCTTATCTAAAACT
ATTGAATGATGCTCCTTCACGATAAGTTCCCAGCAGTAAGAATGTTTACAGTAACTTTCATGGATGAATTCCTGCTTGCC
GAGTTTCTCACCTTCTTTAGATACCACAGTTATTGTCAATTTATTTATTAGCTTTTTTTATTAGAGAAGTGCTATATGTA
CTGGAAAATCTGTACAAATTAA----------------------------------------------------------
------------------------------------------------TACTTACTTAGTGTAGCTACAAAGCCGACTGA
GAAAATCGCTACCTAATCAACTAGGCCACGCATCATTAATCTCTCCTCTCGACTAAAGTAGGTACATATGCAGTCAGTAA
CATCGCTTGGCACTCTCAGCATTTCTGTGTTTGTTATGTGGTTTCTGAAATAGCTAATGCACAGGGAAACTGTAT--TAT
TGTTTTAAAAAATAAACATGATTATGTAATTAATATGACTCATTGCCTGTCTTGTCAATTGGTTGTTTACTTGATGTTTT
TATGGACTGCTGGCTTTATTTCATTTGTGATGAGAGCATTTCAC----------TTTTCGCTCAACATAAATAGTTCTGG
TCAGTTTTACTGGAGAAATTGGTATTCCC------T------AGGTATGGTATTGTTTGCTTGTGAGGCATTCTGATTTT
TTGCTGTACATCAGGACTGCAGATGCACAAAACATAGTGTACCAGCTCTTCCTCACTCAACATGTGGAGTTTTGCATCAA
ATGCCATAGCTGGAAGCATAAAGAAAAAGGTACAACCATCAAAAGGCAGCCTATCCAATCATGATTGCTCTGATGACGAT
GGTTCTTCATGTGCAAGTCGAGAGGAAGGCCTTGAATGCCCAATATGCTGCGAATCCTTCAACATCGTAGAGAACGTTCC
TTATGTCTTGTGGTGTGGTCACACAATGTGCAAGAACTGCATCTTGGGCCTTCAGTGGGCTGTTGTCAAGTTCCCAACCC
TTCCTATCCAGCTGCCTCTCTTTGTCTCGTGTCCTTGGTGCAACCTATTATCTTTCCGGCTGGTGTACAAGGGCAACCTC
AAGTTCCCACGCAAGAACTACTTTCTGCTGTGGATGGTTGAGAGCATGAATGGTGACAGAGCAAAGTTCCATTCCTCTGG
TCATGAAGAGCGCCAATCAGTATGTCCGTCCAGTGGTGGCACCAGTTCCAGTCAACACCACCGAAGAACCCCCACGGCAC
GAGCAGAGACCTCCTCGTCTGCCAGAGATAGAAATGCCGCTGCCAACACCCCCAACACTGCCAGCGTGTCTCTCCAAAAG
CTCATGGTGTGCTTCGTGCAGCTGACGGCCAAGTTCCCGCTCGTGATAATGTTCCTCCTAATAGTTCTCTACGCCGTCCC
TGCCAGCGCTGCGGTTCTGCTCCTGTACGTCCTTGTCACGTTTTTGTTTGCGCTGCCGTCGTTTCTGATCCTCTACTTTG
CTTATCCAACCTTGGACTGGCTCGTGAGAGAGATATTCACTTGAGCCGTGCTGTTCTGAAATGTAAGTACAGTTTATGTA
GCTTTGTGAC-GGTGAAACAAAGCTT-GGATATCTG-TTCCATCCATGGCACCGCTTTGCTGTTATGGCCACTGTATAGA
TTGCCCTTTTCTGCTCCTTGTTTTTTC--CCCCTTTTCTGCTCTGGCCTTTTGAGGCTGTGGTTTGCTGTAACTGTCTGC
TCATTGAAATGTTGTTCTTGTTCATGAGTGGCCCAACCTTTGTAATTTTCCTTTTGTTATGGTCAGGTG-TTT-------
---------------------------------------TACCATGTTTTGCCGCTCTTTCGGGAATGCTCGCGTTGCGA
TGTTCTCATACAGTTGTTTACATTTTGG-TACCGATTCTTCG-TTTGGGACATAGCATCCGCATGTCGAAGTGTGGTGCA
GTAGACGTCCGCCTTCTCGGACTTGCCCAACCAAACATGGCGTTGGCATTGCTATTCATCAAGTTTACTAACGCTTTATA
AGCTTGGGCCGGATCGGCATGTTGGCCACGGTCCTTGGCCCTGACGAATACCCTCGCCTTCGACCAGTCTGTTGCGGAGA
ACGCCTACACTGAATTGCAAATCCATCCGCCCTGTCCCAGCGTGTGCGGTCCGGCCGCTACACATGTTTTTGTTT-----
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>chr4B_1
GGCTATAACTATTCTTGCCTAGGATCCAAACGAGTCCTTAATTCGCAGCTAGTCCTGTGTAGGCTTTACCGAGCGGGTTA
AAACAATGTATTGATAATATTTATTTTCCATTAATGTGCAGTAGGCTTAGATGATCTCTTGCATAAT-------CCATAG
TGGATCTCCCCAGTTAATTTACCATGATTTTGGAACTCTTGGGTAGTTTCTTCTAGTTTATATGTTAGTACATTAGTGAT
AATTAACTGTTTTAAAAAGCACTGAGGCC---ATGTGATAGCACACATGTAGTTTGTCTAAACAGTTCTTATCTAAAACT
AGTGAATGATGCTCCTTCACGATAAGTTTCCAGCAGTAAGAATGTTTACAATAACTTTCCCGCATGAA-TCCTGCTTGCC
GAGTTTC--ACCTTCTATAGATACTGCAGTTCTTGTCAATTTATCTATTAGATTTTT-----------------TATGTA
CTGGAAAGTCTGTACATA--------------------------------------------------------------
----------------------------------------------AGTACTGACTCAGGGTAGCTACAAAGCCGACTGA
GAAAATCGCTACCTAATCAACTAGGCCACACATCATTAGTCCCTACTCTCGACTAAAGTAGATATATATGCAGTCAGTAA
CATCGCTTGGCACTCTCAGCATTTCTGTGTTTGTTATGTGGTTTCTGAAATTGCCAGTACACAGGGAAACTGTATTATAT
TGTTTAGAAAAAGAAACATGATTATGTAGTTAATATGACTCATTGCCTGCCTGGTCAATTGGTTGTTTACTTGATGTTTT
TATAGACTGCTGGCTTTATTTCATTTGTG---AGAGCATTTCACACTTAATTTTTTTTCGCTCAGCATAAATAGTTGTGG
TCAGTTTTACTGGAGAAATTTGTATTTCCCCTATGT------AAGTATGGTATTATTCGCTTGTGAGGCATTCTGATTTT
CTGCTGTACATCAGAACTGCAGATGCACAAAACATAGTGTACCAGCTCTTCCTCATTCAAGATGTGGAGTTTTGCATCAA
ATGCCATAGCTGGAAGCATAAAGAAAAGGGTGCAACCATCAAAAGGCAGCCTATCCAATCCTGATTGCTCTGATGACGAT
GGTTCTTCATGTGCAAGTCGAGAGGAAGGCCTTGAATGCCCAATATGCTGCGAATCCTTCAACATCGTAGAGAACGTTCC
TTATGTCTTGTGGTGTGGTCACACAATGTGCAAGAACTGCATCCTAGGTCTTCAGTGGGCTGTTGTCAAGTTCCCAACCC
TTCCTATCCAGCTGCCTCTCTTTGTCTCATGTCCTTGGTGCAACCTATTATCTTTCCGGCTGGTGTACAAAGGCAACCTC
AAGTTCCCACGTAAGAACTACTTTCTGCTCTGGATGGTTGAGAGCATGAATGGTGACAGAGCAAAGTTCCATTCCTCTGG
TCATGAAGAGCGCCAATCAGTATGTCCCTCCAGTGGTGGCACCAGTTCCAGTCAACACCACCGAAGAACCCCTACGGCAC
GAGCAGAGACC---TCTTCTGCCAGAGATAGAAATGCCGCTGCCAACACCTCCAACACTGCCAGCGTGTCTCTCCAAAAG
CTCATGGTGTGCTTCGTGCAGCTGACTGCCAAGTTCCCGCTCGTGATAATGTTCCTCCTCATAGTTCTCTACGCCGTCCC
TGCCAGCGCCGCGGTTCTGCTCCTGTACGTCCTTGTCACGTTTTTGTTTGCGCTGCCGTCGTTTCTGATCCTCTACTTTG
CTTATCCCACCTTGGACTGGCTCGTGAGAGAGATATTCACTTGAGCCGCGCTGTTCTGAAATGTAAGTACAGTTTATGTA
GCTTTGTGAAAGGTGAAACAAAGCTTTGGATATCTG-TTCCATCCATGGCACCGCTTTGCTGTTATGGCCACTGTATAGA
TTGCCCTTTTCTGCTCCTTGTTTTTTCTTCCCCTTTTCTGCTCTGGCCTTTTGAGGCTGTGGTTTGCTGTAACTGTCTGC
TCATTGAAATGTTGTTCTTGTTCATGAGTGCCCCAACCTTTGTAACTTTCCTTTTGTTATGGTCAGGTGTTTT-------
---------------------------------------TACCATGTTTTGCCGCTCTTTCGGGAATGCTTGCGTTGCGA
TGTTCTCATACAGTTGTTTACATTTTGGGTACTGATTCTTCG-TTTGGGACATAGCATCCGCATGTCGAAGTTCGGTGCC
GGAGACGTCCGCCTTCTCGGACTTGCCCAACCAAA---------------------------------------------
--CTTGGGCCGGATCGGCATGTTGGCCACGGTCCTTGGCCCTGACAAATACTCTCGACTCCCACCAATCTGTTGCGGAGA
ACGCCTACACTAAATTGCAAATCCATCAGCCCTGTCCCAGCGTGTGCGGTCCGGCCGCTACACATGTTTTTGTTTA----
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>SNPs
------------------------------S---------------S---------------S------S----------
-----S---SS-------S-------------------------------------------------------------
----------------S-------S------------SS------S--------------------------S---S---
-------------S-----------------------------------------S------------------------
------------------S--------------------S----------------------------------------
---------------------------S-----------------------S----------------------------
---S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
---------S-----------------------S-------------------------------S--------------
S---S----------------------------------------------------------------------S----
----S---------------------------------------------------------------------------
----------------------------------------------------------S--------------S------
----------------------S-------------SSSSSS--------------------------------------
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--------------------------------------------------S-----------------------------
--------------------------------------------S-----S-----------------------------
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------------------------------------S-------------------------------------------
--------------------------------------S-----------------------------------------
--S-----------------------------------------------------------------------------
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-----------------------------------------------------------------------------S--
----------S-SSS--------------------SS--------S----S--S-------------S--S---------
-S-----------S----------S-S--SS---S----------------S----------------------------
------------------------------------S---------------------S-------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-------------------------S-
----------------S-----------------------S-S--S-------S--S-SS----------S------S-S
---------S------------------------------S--S---------S-----------S--------------
SS----S-S-S---SS--------------------------------S-S------S---------------------S
SS-------SS------SS-S----------S--SS-----------------------S-S-----S---S--S-SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_520
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--------------------AAGTACTCCCTCCGTTCGGA----------------------------------------
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>reverse_2030
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-----------------------------TACCTCTTCTGCTCTGGCCT-------------------------------
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