Multiple sequence alignment - TraesCS4A01G052000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G052000 chr4A 100.000 2357 0 0 1 2357 42786650 42784294 0.000000e+00 4353.0
1 TraesCS4A01G052000 chr4D 91.882 813 45 5 748 1545 421331568 421332374 0.000000e+00 1116.0
2 TraesCS4A01G052000 chr4D 98.169 437 8 0 1921 2357 421332419 421332855 0.000000e+00 763.0
3 TraesCS4A01G052000 chr4D 93.072 332 20 2 1 332 421330674 421331002 1.270000e-132 483.0
4 TraesCS4A01G052000 chr4D 93.662 142 9 0 1651 1792 93336825 93336684 1.830000e-51 213.0
5 TraesCS4A01G052000 chr4D 89.157 83 8 1 1846 1927 430817096 430817014 4.140000e-18 102.0
6 TraesCS4A01G052000 chr4D 98.113 53 0 1 1791 1842 421332371 421332423 8.970000e-15 91.6
7 TraesCS4A01G052000 chr4B 89.398 830 41 19 710 1508 518147358 518148171 0.000000e+00 1002.0
8 TraesCS4A01G052000 chr4B 97.254 437 12 0 1921 2357 518148354 518148790 0.000000e+00 741.0
9 TraesCS4A01G052000 chr4B 95.062 81 3 1 1 81 518146430 518146509 2.460000e-25 126.0
10 TraesCS4A01G052000 chr4B 91.139 79 7 0 1561 1639 28229261 28229339 8.910000e-20 108.0
11 TraesCS4A01G052000 chr4B 91.250 80 5 2 1561 1639 28229357 28229279 8.910000e-20 108.0
12 TraesCS4A01G052000 chr4B 91.111 45 4 0 654 698 615930520 615930564 7.030000e-06 62.1
13 TraesCS4A01G052000 chr7A 88.158 380 36 7 263 635 505498668 505499045 5.980000e-121 444.0
14 TraesCS4A01G052000 chr7A 90.164 305 29 1 331 634 388824601 388824905 1.700000e-106 396.0
15 TraesCS4A01G052000 chr7A 94.366 142 8 0 1651 1792 643187031 643186890 3.940000e-53 219.0
16 TraesCS4A01G052000 chr7A 92.500 80 6 0 1560 1639 217551497 217551418 5.320000e-22 115.0
17 TraesCS4A01G052000 chr2A 85.606 396 43 7 1921 2315 666559168 666558786 1.010000e-108 403.0
18 TraesCS4A01G052000 chr2A 82.394 142 14 1 1651 1792 558531005 558530875 1.910000e-21 113.0
19 TraesCS4A01G052000 chr2A 91.250 80 7 0 1560 1639 709197784 709197863 2.480000e-20 110.0
20 TraesCS4A01G052000 chr1D 90.523 306 28 1 331 635 411904893 411905198 1.010000e-108 403.0
21 TraesCS4A01G052000 chr1D 93.662 142 9 0 1651 1792 68439187 68439328 1.830000e-51 213.0
22 TraesCS4A01G052000 chr1A 90.196 306 28 2 330 634 285590025 285590329 4.720000e-107 398.0
23 TraesCS4A01G052000 chr1A 93.662 142 9 0 1651 1792 295312858 295312717 1.830000e-51 213.0
24 TraesCS4A01G052000 chr1A 84.848 66 10 0 633 698 500051181 500051246 1.510000e-07 67.6
25 TraesCS4A01G052000 chr3D 90.164 305 29 1 335 639 434949474 434949777 1.700000e-106 396.0
26 TraesCS4A01G052000 chr3D 97.143 35 1 0 1540 1574 347611650 347611616 2.530000e-05 60.2
27 TraesCS4A01G052000 chr7B 89.644 309 30 2 331 637 405062872 405063180 2.200000e-105 392.0
28 TraesCS4A01G052000 chr7B 93.662 142 9 0 1651 1792 713291766 713291907 1.830000e-51 213.0
29 TraesCS4A01G052000 chr7B 87.129 101 11 2 1540 1639 481068085 481067986 1.910000e-21 113.0
30 TraesCS4A01G052000 chr7B 86.813 91 6 5 1839 1925 683476412 683476324 1.930000e-16 97.1
31 TraesCS4A01G052000 chr6B 89.457 313 30 2 330 641 78519326 78519016 2.200000e-105 392.0
32 TraesCS4A01G052000 chr6B 89.869 306 30 1 330 634 460488778 460488473 2.200000e-105 392.0
33 TraesCS4A01G052000 chr6B 90.698 86 7 1 1840 1924 118184650 118184735 1.910000e-21 113.0
34 TraesCS4A01G052000 chr3A 89.644 309 31 1 327 634 340265915 340266223 2.200000e-105 392.0
35 TraesCS4A01G052000 chr3A 93.836 146 9 0 1651 1796 477708307 477708162 1.100000e-53 220.0
36 TraesCS4A01G052000 chr3A 92.466 146 10 1 1651 1796 662422368 662422512 8.540000e-50 207.0
37 TraesCS4A01G052000 chr3A 93.750 80 5 0 1560 1639 327830913 327830834 1.140000e-23 121.0
38 TraesCS4A01G052000 chr3A 89.231 65 7 0 262 326 441848773 441848709 5.400000e-12 82.4
39 TraesCS4A01G052000 chr3A 100.000 28 0 0 1535 1562 743565252 743565279 4.000000e-03 52.8
40 TraesCS4A01G052000 chr2B 86.076 237 33 0 2107 2343 614906422 614906186 3.010000e-64 255.0
41 TraesCS4A01G052000 chr2B 86.957 92 8 2 1839 1929 798383436 798383524 1.490000e-17 100.0
42 TraesCS4A01G052000 chr6D 91.772 158 12 1 1640 1797 41542497 41542341 3.940000e-53 219.0
43 TraesCS4A01G052000 chr6D 92.593 81 6 0 1559 1639 452121956 452122036 1.480000e-22 117.0
44 TraesCS4A01G052000 chr6D 90.000 90 7 2 1840 1927 28123529 28123618 5.320000e-22 115.0
45 TraesCS4A01G052000 chr6D 83.582 67 8 3 664 727 237187458 237187392 2.530000e-05 60.2
46 TraesCS4A01G052000 chr5D 91.503 153 13 0 1651 1803 491000714 491000562 6.600000e-51 211.0
47 TraesCS4A01G052000 chr5D 100.000 35 0 0 664 698 422805092 422805058 5.440000e-07 65.8
48 TraesCS4A01G052000 chr7D 82.609 161 24 4 176 334 30183249 30183407 3.160000e-29 139.0
49 TraesCS4A01G052000 chr7D 88.372 86 9 1 1840 1924 584302465 584302550 4.140000e-18 102.0
50 TraesCS4A01G052000 chr7D 82.927 82 7 2 654 735 618584411 618584485 1.510000e-07 67.6
51 TraesCS4A01G052000 chr3B 90.698 86 7 1 1840 1924 736912224 736912139 1.910000e-21 113.0
52 TraesCS4A01G052000 chr3B 91.250 80 6 1 1560 1639 108738641 108738563 8.910000e-20 108.0
53 TraesCS4A01G052000 chr3B 85.567 97 11 3 1829 1924 60836678 60836772 5.360000e-17 99.0
54 TraesCS4A01G052000 chr3B 88.235 51 6 0 648 698 387885360 387885410 7.030000e-06 62.1
55 TraesCS4A01G052000 chr3B 94.872 39 2 0 660 698 821053600 821053562 7.030000e-06 62.1
56 TraesCS4A01G052000 chrUn 89.535 86 8 1 1840 1924 81901909 81901824 8.910000e-20 108.0
57 TraesCS4A01G052000 chr2D 91.139 79 7 0 1561 1639 28839855 28839777 8.910000e-20 108.0
58 TraesCS4A01G052000 chr2D 81.609 87 9 2 654 740 543736248 543736169 5.440000e-07 65.8
59 TraesCS4A01G052000 chr2D 100.000 29 0 0 1542 1570 248199379 248199407 1.000000e-03 54.7
60 TraesCS4A01G052000 chr5B 93.023 43 3 0 656 698 589674599 589674557 1.960000e-06 63.9
61 TraesCS4A01G052000 chr5B 100.000 29 0 0 1534 1562 591646851 591646879 1.000000e-03 54.7
62 TraesCS4A01G052000 chr1B 96.875 32 1 0 1533 1564 643105727 643105758 1.000000e-03 54.7
63 TraesCS4A01G052000 chr5A 100.000 28 0 0 1535 1562 402135396 402135423 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G052000 chr4A 42784294 42786650 2356 True 4353.0 4353 100.000000 1 2357 1 chr4A.!!$R1 2356
1 TraesCS4A01G052000 chr4D 421330674 421332855 2181 False 613.4 1116 95.309000 1 2357 4 chr4D.!!$F1 2356
2 TraesCS4A01G052000 chr4B 518146430 518148790 2360 False 623.0 1002 93.904667 1 2357 3 chr4B.!!$F3 2356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 548 0.034089 GCACTTAGCCCATTGGAGGT 60.034 55.0 3.62 2.77 37.23 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 2203 0.038251 GTGAGCTGTGACGATGTCCA 60.038 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 203 2.475339 TAGGCTAACCGTAATGGGGA 57.525 50.000 0.00 0.00 44.64 4.81
174 206 1.235724 GCTAACCGTAATGGGGATGC 58.764 55.000 0.00 0.00 44.64 3.91
190 222 6.268414 TGGGGATGCCATAGTTAGTATCATA 58.732 40.000 5.30 0.00 0.00 2.15
194 226 8.924303 GGGATGCCATAGTTAGTATCATACATA 58.076 37.037 0.00 0.00 0.00 2.29
216 248 9.412460 ACATATCAGCTAGGAAATTTTGATGAA 57.588 29.630 9.90 0.00 0.00 2.57
220 252 8.352137 TCAGCTAGGAAATTTTGATGAAATGA 57.648 30.769 0.00 0.00 37.98 2.57
337 369 8.971032 AAATAGGATCATCTGAGATACTCCTT 57.029 34.615 22.54 12.37 38.50 3.36
338 370 8.593945 AATAGGATCATCTGAGATACTCCTTC 57.406 38.462 22.54 4.43 38.50 3.46
339 371 5.009631 AGGATCATCTGAGATACTCCTTCG 58.990 45.833 15.54 0.00 33.93 3.79
340 372 4.764823 GGATCATCTGAGATACTCCTTCGT 59.235 45.833 12.72 0.00 0.00 3.85
341 373 5.106317 GGATCATCTGAGATACTCCTTCGTC 60.106 48.000 12.72 0.00 0.00 4.20
342 374 4.138290 TCATCTGAGATACTCCTTCGTCC 58.862 47.826 0.00 0.00 0.00 4.79
343 375 2.562635 TCTGAGATACTCCTTCGTCCG 58.437 52.381 0.00 0.00 0.00 4.79
344 376 1.604755 CTGAGATACTCCTTCGTCCGG 59.395 57.143 0.00 0.00 0.00 5.14
345 377 1.064906 TGAGATACTCCTTCGTCCGGT 60.065 52.381 0.00 0.00 0.00 5.28
346 378 1.334243 GAGATACTCCTTCGTCCGGTG 59.666 57.143 0.00 0.00 0.00 4.94
347 379 1.064906 AGATACTCCTTCGTCCGGTGA 60.065 52.381 0.00 0.00 0.00 4.02
348 380 1.747355 GATACTCCTTCGTCCGGTGAA 59.253 52.381 0.00 6.53 0.00 3.18
349 381 1.171308 TACTCCTTCGTCCGGTGAAG 58.829 55.000 23.64 23.64 41.95 3.02
350 382 0.538977 ACTCCTTCGTCCGGTGAAGA 60.539 55.000 28.83 18.38 44.42 2.87
351 383 0.171455 CTCCTTCGTCCGGTGAAGAG 59.829 60.000 28.83 21.75 44.42 2.85
352 384 0.538977 TCCTTCGTCCGGTGAAGAGT 60.539 55.000 28.83 0.00 44.42 3.24
353 385 0.388649 CCTTCGTCCGGTGAAGAGTG 60.389 60.000 28.83 15.57 44.42 3.51
354 386 0.314302 CTTCGTCCGGTGAAGAGTGT 59.686 55.000 25.31 0.00 44.42 3.55
355 387 1.538512 CTTCGTCCGGTGAAGAGTGTA 59.461 52.381 25.31 0.48 44.42 2.90
356 388 0.877071 TCGTCCGGTGAAGAGTGTAC 59.123 55.000 0.00 0.00 0.00 2.90
357 389 0.594602 CGTCCGGTGAAGAGTGTACA 59.405 55.000 0.00 0.00 0.00 2.90
358 390 1.201647 CGTCCGGTGAAGAGTGTACAT 59.798 52.381 0.00 0.00 0.00 2.29
359 391 2.731341 CGTCCGGTGAAGAGTGTACATC 60.731 54.545 0.00 0.00 0.00 3.06
360 392 2.492484 GTCCGGTGAAGAGTGTACATCT 59.508 50.000 0.00 0.27 0.00 2.90
361 393 3.693085 GTCCGGTGAAGAGTGTACATCTA 59.307 47.826 0.00 0.00 0.00 1.98
362 394 3.945921 TCCGGTGAAGAGTGTACATCTAG 59.054 47.826 0.00 0.00 0.00 2.43
363 395 3.489398 CCGGTGAAGAGTGTACATCTAGC 60.489 52.174 0.00 0.00 0.00 3.42
364 396 3.378742 CGGTGAAGAGTGTACATCTAGCT 59.621 47.826 0.00 0.00 0.00 3.32
365 397 4.142359 CGGTGAAGAGTGTACATCTAGCTT 60.142 45.833 0.00 0.00 0.00 3.74
366 398 5.344884 GGTGAAGAGTGTACATCTAGCTTC 58.655 45.833 0.00 8.64 0.00 3.86
367 399 5.105716 GGTGAAGAGTGTACATCTAGCTTCA 60.106 44.000 17.25 17.25 38.23 3.02
368 400 6.390721 GTGAAGAGTGTACATCTAGCTTCAA 58.609 40.000 20.27 9.81 41.02 2.69
369 401 6.868864 GTGAAGAGTGTACATCTAGCTTCAAA 59.131 38.462 20.27 6.38 41.02 2.69
370 402 7.385205 GTGAAGAGTGTACATCTAGCTTCAAAA 59.615 37.037 20.27 5.92 41.02 2.44
371 403 8.097038 TGAAGAGTGTACATCTAGCTTCAAAAT 58.903 33.333 18.14 0.50 37.79 1.82
372 404 8.854614 AAGAGTGTACATCTAGCTTCAAAATT 57.145 30.769 0.00 0.00 0.00 1.82
373 405 8.854614 AGAGTGTACATCTAGCTTCAAAATTT 57.145 30.769 0.00 0.00 0.00 1.82
374 406 8.725148 AGAGTGTACATCTAGCTTCAAAATTTG 58.275 33.333 0.00 0.00 0.00 2.32
375 407 8.396272 AGTGTACATCTAGCTTCAAAATTTGT 57.604 30.769 5.56 0.00 0.00 2.83
376 408 8.507249 AGTGTACATCTAGCTTCAAAATTTGTC 58.493 33.333 5.56 0.00 0.00 3.18
377 409 7.750903 GTGTACATCTAGCTTCAAAATTTGTCC 59.249 37.037 5.56 0.00 0.00 4.02
378 410 6.899393 ACATCTAGCTTCAAAATTTGTCCA 57.101 33.333 5.56 0.00 0.00 4.02
379 411 6.681777 ACATCTAGCTTCAAAATTTGTCCAC 58.318 36.000 5.56 0.00 0.00 4.02
380 412 6.265196 ACATCTAGCTTCAAAATTTGTCCACA 59.735 34.615 5.56 0.00 0.00 4.17
381 413 6.707440 TCTAGCTTCAAAATTTGTCCACAA 57.293 33.333 5.56 0.00 0.00 3.33
410 442 9.846248 AAATGTACTTCTATCTTTTCAATGCAC 57.154 29.630 0.00 0.00 0.00 4.57
411 443 8.798859 ATGTACTTCTATCTTTTCAATGCACT 57.201 30.769 0.00 0.00 0.00 4.40
412 444 8.621532 TGTACTTCTATCTTTTCAATGCACTT 57.378 30.769 0.00 0.00 0.00 3.16
413 445 9.066892 TGTACTTCTATCTTTTCAATGCACTTT 57.933 29.630 0.00 0.00 0.00 2.66
422 454 8.458573 TCTTTTCAATGCACTTTAAAGTAGGA 57.541 30.769 20.15 15.36 37.08 2.94
423 455 8.908903 TCTTTTCAATGCACTTTAAAGTAGGAA 58.091 29.630 20.15 15.02 37.08 3.36
424 456 9.528018 CTTTTCAATGCACTTTAAAGTAGGAAA 57.472 29.630 20.15 18.88 37.08 3.13
425 457 9.877178 TTTTCAATGCACTTTAAAGTAGGAAAA 57.123 25.926 20.15 22.26 37.08 2.29
426 458 9.877178 TTTCAATGCACTTTAAAGTAGGAAAAA 57.123 25.926 20.15 13.09 37.08 1.94
447 479 4.392921 AATACTTCTCTCCCATCACACG 57.607 45.455 0.00 0.00 0.00 4.49
448 480 0.898320 ACTTCTCTCCCATCACACGG 59.102 55.000 0.00 0.00 0.00 4.94
449 481 0.898320 CTTCTCTCCCATCACACGGT 59.102 55.000 0.00 0.00 0.00 4.83
450 482 2.100197 CTTCTCTCCCATCACACGGTA 58.900 52.381 0.00 0.00 0.00 4.02
451 483 2.225382 TCTCTCCCATCACACGGTAA 57.775 50.000 0.00 0.00 0.00 2.85
452 484 2.747177 TCTCTCCCATCACACGGTAAT 58.253 47.619 0.00 0.00 0.00 1.89
453 485 2.430694 TCTCTCCCATCACACGGTAATG 59.569 50.000 0.00 0.00 0.00 1.90
454 486 2.430694 CTCTCCCATCACACGGTAATGA 59.569 50.000 0.00 0.00 0.00 2.57
455 487 2.835156 TCTCCCATCACACGGTAATGAA 59.165 45.455 0.00 0.00 0.00 2.57
456 488 3.118775 TCTCCCATCACACGGTAATGAAG 60.119 47.826 0.00 0.00 0.00 3.02
457 489 2.835156 TCCCATCACACGGTAATGAAGA 59.165 45.455 0.00 0.00 0.00 2.87
458 490 2.936498 CCCATCACACGGTAATGAAGAC 59.064 50.000 0.00 0.00 0.00 3.01
459 491 2.936498 CCATCACACGGTAATGAAGACC 59.064 50.000 0.00 0.00 0.00 3.85
460 492 3.595173 CATCACACGGTAATGAAGACCA 58.405 45.455 0.00 0.00 36.72 4.02
461 493 3.755112 TCACACGGTAATGAAGACCAA 57.245 42.857 0.00 0.00 36.72 3.67
462 494 4.280436 TCACACGGTAATGAAGACCAAT 57.720 40.909 0.00 0.00 36.72 3.16
463 495 5.408880 TCACACGGTAATGAAGACCAATA 57.591 39.130 0.00 0.00 36.72 1.90
464 496 5.795972 TCACACGGTAATGAAGACCAATAA 58.204 37.500 0.00 0.00 36.72 1.40
465 497 5.640357 TCACACGGTAATGAAGACCAATAAC 59.360 40.000 0.00 0.00 36.72 1.89
466 498 5.410132 CACACGGTAATGAAGACCAATAACA 59.590 40.000 0.00 0.00 36.72 2.41
467 499 5.998981 ACACGGTAATGAAGACCAATAACAA 59.001 36.000 0.00 0.00 36.72 2.83
468 500 6.657541 ACACGGTAATGAAGACCAATAACAAT 59.342 34.615 0.00 0.00 36.72 2.71
469 501 7.148306 ACACGGTAATGAAGACCAATAACAATC 60.148 37.037 0.00 0.00 36.72 2.67
470 502 7.065803 CACGGTAATGAAGACCAATAACAATCT 59.934 37.037 0.00 0.00 36.72 2.40
471 503 8.262227 ACGGTAATGAAGACCAATAACAATCTA 58.738 33.333 0.00 0.00 36.72 1.98
472 504 8.548721 CGGTAATGAAGACCAATAACAATCTAC 58.451 37.037 0.00 0.00 36.72 2.59
473 505 9.391006 GGTAATGAAGACCAATAACAATCTACA 57.609 33.333 0.00 0.00 36.91 2.74
475 507 8.862325 AATGAAGACCAATAACAATCTACACA 57.138 30.769 0.00 0.00 0.00 3.72
476 508 9.466497 AATGAAGACCAATAACAATCTACACAT 57.534 29.630 0.00 0.00 0.00 3.21
477 509 8.267620 TGAAGACCAATAACAATCTACACATG 57.732 34.615 0.00 0.00 0.00 3.21
478 510 7.336679 TGAAGACCAATAACAATCTACACATGG 59.663 37.037 0.00 0.00 0.00 3.66
479 511 6.721318 AGACCAATAACAATCTACACATGGT 58.279 36.000 0.00 0.00 41.10 3.55
480 512 7.016361 GACCAATAACAATCTACACATGGTC 57.984 40.000 5.47 5.47 45.04 4.02
481 513 6.721318 ACCAATAACAATCTACACATGGTCT 58.279 36.000 0.00 0.00 33.59 3.85
482 514 7.175104 ACCAATAACAATCTACACATGGTCTT 58.825 34.615 0.00 0.00 33.59 3.01
483 515 7.336931 ACCAATAACAATCTACACATGGTCTTC 59.663 37.037 0.00 0.00 33.59 2.87
484 516 7.554118 CCAATAACAATCTACACATGGTCTTCT 59.446 37.037 0.00 0.00 0.00 2.85
485 517 8.950210 CAATAACAATCTACACATGGTCTTCTT 58.050 33.333 0.00 0.00 0.00 2.52
489 521 9.520515 AACAATCTACACATGGTCTTCTTAATT 57.479 29.630 0.00 0.00 0.00 1.40
490 522 9.520515 ACAATCTACACATGGTCTTCTTAATTT 57.479 29.630 0.00 0.00 0.00 1.82
491 523 9.994432 CAATCTACACATGGTCTTCTTAATTTC 57.006 33.333 0.00 0.00 0.00 2.17
492 524 9.965902 AATCTACACATGGTCTTCTTAATTTCT 57.034 29.630 0.00 0.00 0.00 2.52
494 526 9.871238 TCTACACATGGTCTTCTTAATTTCTAC 57.129 33.333 0.00 0.00 0.00 2.59
495 527 9.653287 CTACACATGGTCTTCTTAATTTCTACA 57.347 33.333 0.00 0.00 0.00 2.74
497 529 8.950210 ACACATGGTCTTCTTAATTTCTACATG 58.050 33.333 0.00 0.00 38.27 3.21
498 530 7.912250 CACATGGTCTTCTTAATTTCTACATGC 59.088 37.037 0.00 0.00 36.40 4.06
499 531 7.611467 ACATGGTCTTCTTAATTTCTACATGCA 59.389 33.333 0.00 0.00 36.40 3.96
500 532 7.377766 TGGTCTTCTTAATTTCTACATGCAC 57.622 36.000 0.00 0.00 0.00 4.57
501 533 7.168219 TGGTCTTCTTAATTTCTACATGCACT 58.832 34.615 0.00 0.00 0.00 4.40
502 534 7.665559 TGGTCTTCTTAATTTCTACATGCACTT 59.334 33.333 0.00 0.00 0.00 3.16
503 535 9.162764 GGTCTTCTTAATTTCTACATGCACTTA 57.837 33.333 0.00 0.00 0.00 2.24
505 537 8.883731 TCTTCTTAATTTCTACATGCACTTAGC 58.116 33.333 0.00 0.00 45.96 3.09
506 538 7.553881 TCTTAATTTCTACATGCACTTAGCC 57.446 36.000 0.00 0.00 44.83 3.93
507 539 6.542370 TCTTAATTTCTACATGCACTTAGCCC 59.458 38.462 0.00 0.00 44.83 5.19
508 540 3.712016 TTTCTACATGCACTTAGCCCA 57.288 42.857 0.00 0.00 44.83 5.36
509 541 3.931907 TTCTACATGCACTTAGCCCAT 57.068 42.857 0.00 0.00 44.83 4.00
510 542 3.931907 TCTACATGCACTTAGCCCATT 57.068 42.857 0.00 0.00 44.83 3.16
511 543 3.544684 TCTACATGCACTTAGCCCATTG 58.455 45.455 0.00 0.00 44.83 2.82
512 544 1.477553 ACATGCACTTAGCCCATTGG 58.522 50.000 0.00 0.00 44.83 3.16
513 545 1.005805 ACATGCACTTAGCCCATTGGA 59.994 47.619 3.62 0.00 44.83 3.53
514 546 1.679680 CATGCACTTAGCCCATTGGAG 59.320 52.381 3.62 0.00 44.83 3.86
515 547 0.034186 TGCACTTAGCCCATTGGAGG 60.034 55.000 3.62 0.00 44.83 4.30
516 548 0.034089 GCACTTAGCCCATTGGAGGT 60.034 55.000 3.62 2.77 37.23 3.85
517 549 1.616994 GCACTTAGCCCATTGGAGGTT 60.617 52.381 3.62 0.00 37.23 3.50
518 550 2.094675 CACTTAGCCCATTGGAGGTTG 58.905 52.381 3.62 0.59 0.00 3.77
519 551 1.005924 ACTTAGCCCATTGGAGGTTGG 59.994 52.381 3.62 0.30 0.00 3.77
524 556 2.846665 CCCATTGGAGGTTGGGTAAT 57.153 50.000 3.62 0.00 46.38 1.89
525 557 3.114643 CCCATTGGAGGTTGGGTAATT 57.885 47.619 3.62 0.00 46.38 1.40
526 558 4.258457 CCCATTGGAGGTTGGGTAATTA 57.742 45.455 3.62 0.00 46.38 1.40
527 559 4.615513 CCCATTGGAGGTTGGGTAATTAA 58.384 43.478 3.62 0.00 46.38 1.40
528 560 5.026790 CCCATTGGAGGTTGGGTAATTAAA 58.973 41.667 3.62 0.00 46.38 1.52
529 561 5.128663 CCCATTGGAGGTTGGGTAATTAAAG 59.871 44.000 3.62 0.00 46.38 1.85
530 562 5.955355 CCATTGGAGGTTGGGTAATTAAAGA 59.045 40.000 0.00 0.00 0.00 2.52
531 563 6.096846 CCATTGGAGGTTGGGTAATTAAAGAG 59.903 42.308 0.00 0.00 0.00 2.85
532 564 5.187621 TGGAGGTTGGGTAATTAAAGAGG 57.812 43.478 0.00 0.00 0.00 3.69
533 565 4.853276 TGGAGGTTGGGTAATTAAAGAGGA 59.147 41.667 0.00 0.00 0.00 3.71
534 566 5.045140 TGGAGGTTGGGTAATTAAAGAGGAG 60.045 44.000 0.00 0.00 0.00 3.69
535 567 5.191124 GGAGGTTGGGTAATTAAAGAGGAGA 59.809 44.000 0.00 0.00 0.00 3.71
536 568 6.296836 GGAGGTTGGGTAATTAAAGAGGAGAA 60.297 42.308 0.00 0.00 0.00 2.87
537 569 7.098845 AGGTTGGGTAATTAAAGAGGAGAAA 57.901 36.000 0.00 0.00 0.00 2.52
538 570 7.175797 AGGTTGGGTAATTAAAGAGGAGAAAG 58.824 38.462 0.00 0.00 0.00 2.62
539 571 7.018249 AGGTTGGGTAATTAAAGAGGAGAAAGA 59.982 37.037 0.00 0.00 0.00 2.52
540 572 7.834681 GGTTGGGTAATTAAAGAGGAGAAAGAT 59.165 37.037 0.00 0.00 0.00 2.40
541 573 8.678199 GTTGGGTAATTAAAGAGGAGAAAGATG 58.322 37.037 0.00 0.00 0.00 2.90
542 574 7.346471 TGGGTAATTAAAGAGGAGAAAGATGG 58.654 38.462 0.00 0.00 0.00 3.51
543 575 7.036863 TGGGTAATTAAAGAGGAGAAAGATGGT 60.037 37.037 0.00 0.00 0.00 3.55
544 576 7.283354 GGGTAATTAAAGAGGAGAAAGATGGTG 59.717 40.741 0.00 0.00 0.00 4.17
545 577 7.283354 GGTAATTAAAGAGGAGAAAGATGGTGG 59.717 40.741 0.00 0.00 0.00 4.61
546 578 5.843019 TTAAAGAGGAGAAAGATGGTGGT 57.157 39.130 0.00 0.00 0.00 4.16
547 579 4.731313 AAAGAGGAGAAAGATGGTGGTT 57.269 40.909 0.00 0.00 0.00 3.67
548 580 4.731313 AAGAGGAGAAAGATGGTGGTTT 57.269 40.909 0.00 0.00 0.00 3.27
549 581 4.026356 AGAGGAGAAAGATGGTGGTTTG 57.974 45.455 0.00 0.00 0.00 2.93
550 582 2.489722 GAGGAGAAAGATGGTGGTTTGC 59.510 50.000 0.00 0.00 0.00 3.68
551 583 2.158475 AGGAGAAAGATGGTGGTTTGCA 60.158 45.455 0.00 0.00 0.00 4.08
552 584 2.827921 GGAGAAAGATGGTGGTTTGCAT 59.172 45.455 0.00 0.00 0.00 3.96
553 585 3.119352 GGAGAAAGATGGTGGTTTGCATC 60.119 47.826 0.00 0.00 0.00 3.91
554 586 3.760684 GAGAAAGATGGTGGTTTGCATCT 59.239 43.478 0.00 0.00 36.10 2.90
555 587 3.760684 AGAAAGATGGTGGTTTGCATCTC 59.239 43.478 0.00 0.00 33.74 2.75
556 588 3.446442 AAGATGGTGGTTTGCATCTCT 57.554 42.857 0.00 0.00 33.74 3.10
557 589 2.996631 AGATGGTGGTTTGCATCTCTC 58.003 47.619 0.00 0.00 29.28 3.20
558 590 2.019984 GATGGTGGTTTGCATCTCTCC 58.980 52.381 0.00 0.00 0.00 3.71
559 591 0.770499 TGGTGGTTTGCATCTCTCCA 59.230 50.000 0.00 0.00 0.00 3.86
560 592 1.144708 TGGTGGTTTGCATCTCTCCAA 59.855 47.619 0.00 0.00 0.00 3.53
561 593 2.225091 TGGTGGTTTGCATCTCTCCAAT 60.225 45.455 0.00 0.00 0.00 3.16
562 594 3.010027 TGGTGGTTTGCATCTCTCCAATA 59.990 43.478 0.00 0.00 0.00 1.90
563 595 3.378427 GGTGGTTTGCATCTCTCCAATAC 59.622 47.826 0.00 0.00 0.00 1.89
564 596 4.009675 GTGGTTTGCATCTCTCCAATACA 58.990 43.478 0.00 0.00 0.00 2.29
565 597 4.641989 GTGGTTTGCATCTCTCCAATACAT 59.358 41.667 0.00 0.00 0.00 2.29
566 598 5.126061 GTGGTTTGCATCTCTCCAATACATT 59.874 40.000 0.00 0.00 0.00 2.71
567 599 5.716228 TGGTTTGCATCTCTCCAATACATTT 59.284 36.000 0.00 0.00 0.00 2.32
568 600 6.211184 TGGTTTGCATCTCTCCAATACATTTT 59.789 34.615 0.00 0.00 0.00 1.82
569 601 7.099120 GGTTTGCATCTCTCCAATACATTTTT 58.901 34.615 0.00 0.00 0.00 1.94
621 653 6.737254 AATTAAATGTACAGTCTTCACCGG 57.263 37.500 0.00 0.00 0.00 5.28
622 654 5.471556 TTAAATGTACAGTCTTCACCGGA 57.528 39.130 9.46 0.00 0.00 5.14
623 655 4.553330 AAATGTACAGTCTTCACCGGAT 57.447 40.909 9.46 0.00 0.00 4.18
624 656 3.526931 ATGTACAGTCTTCACCGGATG 57.473 47.619 9.46 2.48 0.00 3.51
625 657 1.548719 TGTACAGTCTTCACCGGATGG 59.451 52.381 9.46 0.00 42.84 3.51
626 658 1.822990 GTACAGTCTTCACCGGATGGA 59.177 52.381 9.46 0.00 39.21 3.41
627 659 0.898320 ACAGTCTTCACCGGATGGAG 59.102 55.000 9.46 7.27 39.21 3.86
628 660 0.176680 CAGTCTTCACCGGATGGAGG 59.823 60.000 9.46 3.15 34.17 4.30
629 661 0.041238 AGTCTTCACCGGATGGAGGA 59.959 55.000 9.46 5.82 34.17 3.71
630 662 0.902531 GTCTTCACCGGATGGAGGAA 59.097 55.000 9.46 0.86 34.17 3.36
631 663 1.134670 GTCTTCACCGGATGGAGGAAG 60.135 57.143 9.46 10.95 44.35 3.46
632 664 0.905357 CTTCACCGGATGGAGGAAGT 59.095 55.000 9.46 0.00 41.27 3.01
633 665 2.108168 CTTCACCGGATGGAGGAAGTA 58.892 52.381 9.46 0.00 41.27 2.24
644 760 9.148879 CCGGATGGAGGAAGTATTAATCTATAT 57.851 37.037 0.00 0.00 37.49 0.86
776 1564 1.000843 TCGGTATGCATCAAGGGATCG 59.999 52.381 0.19 0.00 0.00 3.69
790 1578 3.214328 AGGGATCGACCACATTAATTGC 58.786 45.455 6.41 0.00 41.20 3.56
796 1584 6.292919 GGATCGACCACATTAATTGCTACTTC 60.293 42.308 0.00 0.00 38.79 3.01
854 1654 5.069119 ACATGCATTCAGTTATCTCCGTCTA 59.931 40.000 0.00 0.00 0.00 2.59
856 1656 5.773575 TGCATTCAGTTATCTCCGTCTATC 58.226 41.667 0.00 0.00 0.00 2.08
871 1671 4.456222 CCGTCTATCTATTCGACCATGTCT 59.544 45.833 0.00 0.00 0.00 3.41
873 1673 5.623335 GTCTATCTATTCGACCATGTCTCG 58.377 45.833 4.09 4.09 0.00 4.04
1015 1830 1.890979 GCCATGAGGACCAGCATCG 60.891 63.158 0.00 0.00 36.89 3.84
1028 1843 2.413351 CATCGCCCTCGTCATCGT 59.587 61.111 0.00 0.00 38.33 3.73
1184 1999 4.473520 CGGCCGGCTCAGGTTCAT 62.474 66.667 28.56 0.00 0.00 2.57
1237 2052 1.810030 GGCTTCAACTACCGGCTCG 60.810 63.158 0.00 0.00 0.00 5.03
1302 2117 3.755628 GAGGTGTACGAGGCGGCA 61.756 66.667 13.08 0.00 0.00 5.69
1333 2148 2.295692 CGCAAGCTCATCTCCTTCG 58.704 57.895 0.00 0.00 0.00 3.79
1431 2246 3.887716 AGCAATATTCCTGAGGCATCAAC 59.112 43.478 1.37 0.00 34.23 3.18
1483 2298 8.492673 TTGACTCACATAATCTAAATGTCACC 57.507 34.615 0.00 0.00 35.39 4.02
1485 2300 6.357367 ACTCACATAATCTAAATGTCACCCC 58.643 40.000 0.00 0.00 35.39 4.95
1550 2383 2.303311 GTGGATGCCTTATACTCCCTCC 59.697 54.545 0.00 0.00 0.00 4.30
1553 2386 2.170012 TGCCTTATACTCCCTCCGTT 57.830 50.000 0.00 0.00 0.00 4.44
1554 2387 2.037144 TGCCTTATACTCCCTCCGTTC 58.963 52.381 0.00 0.00 0.00 3.95
1555 2388 1.343789 GCCTTATACTCCCTCCGTTCC 59.656 57.143 0.00 0.00 0.00 3.62
1556 2389 2.960163 CCTTATACTCCCTCCGTTCCT 58.040 52.381 0.00 0.00 0.00 3.36
1557 2390 3.753193 GCCTTATACTCCCTCCGTTCCTA 60.753 52.174 0.00 0.00 0.00 2.94
1562 2395 7.309683 CCTTATACTCCCTCCGTTCCTAAATAC 60.310 44.444 0.00 0.00 0.00 1.89
1563 2396 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1564 2397 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
1565 2398 4.216708 CTCCCTCCGTTCCTAAATACTCT 58.783 47.826 0.00 0.00 0.00 3.24
1566 2399 4.213513 TCCCTCCGTTCCTAAATACTCTC 58.786 47.826 0.00 0.00 0.00 3.20
1567 2400 4.079327 TCCCTCCGTTCCTAAATACTCTCT 60.079 45.833 0.00 0.00 0.00 3.10
1569 2402 4.278919 CCTCCGTTCCTAAATACTCTCTCC 59.721 50.000 0.00 0.00 0.00 3.71
1570 2403 4.863548 TCCGTTCCTAAATACTCTCTCCA 58.136 43.478 0.00 0.00 0.00 3.86
1572 2405 5.535406 TCCGTTCCTAAATACTCTCTCCATC 59.465 44.000 0.00 0.00 0.00 3.51
1573 2406 5.279056 CCGTTCCTAAATACTCTCTCCATCC 60.279 48.000 0.00 0.00 0.00 3.51
1574 2407 5.279056 CGTTCCTAAATACTCTCTCCATCCC 60.279 48.000 0.00 0.00 0.00 3.85
1576 2409 5.788430 TCCTAAATACTCTCTCCATCCCAA 58.212 41.667 0.00 0.00 0.00 4.12
1577 2410 6.209774 TCCTAAATACTCTCTCCATCCCAAA 58.790 40.000 0.00 0.00 0.00 3.28
1579 2412 7.350921 TCCTAAATACTCTCTCCATCCCAAAAT 59.649 37.037 0.00 0.00 0.00 1.82
1580 2413 8.660435 CCTAAATACTCTCTCCATCCCAAAATA 58.340 37.037 0.00 0.00 0.00 1.40
1582 2415 8.986929 AAATACTCTCTCCATCCCAAAATAAG 57.013 34.615 0.00 0.00 0.00 1.73
1584 2417 5.749462 ACTCTCTCCATCCCAAAATAAGTG 58.251 41.667 0.00 0.00 0.00 3.16
1585 2418 5.488919 ACTCTCTCCATCCCAAAATAAGTGA 59.511 40.000 0.00 0.00 0.00 3.41
1586 2419 5.745227 TCTCTCCATCCCAAAATAAGTGAC 58.255 41.667 0.00 0.00 0.00 3.67
1587 2420 5.488919 TCTCTCCATCCCAAAATAAGTGACT 59.511 40.000 0.00 0.00 0.00 3.41
1588 2421 5.745227 TCTCCATCCCAAAATAAGTGACTC 58.255 41.667 0.00 0.00 0.00 3.36
1589 2422 4.513442 TCCATCCCAAAATAAGTGACTCG 58.487 43.478 0.00 0.00 0.00 4.18
1590 2423 4.224147 TCCATCCCAAAATAAGTGACTCGA 59.776 41.667 0.00 0.00 0.00 4.04
1591 2424 4.332819 CCATCCCAAAATAAGTGACTCGAC 59.667 45.833 0.00 0.00 0.00 4.20
1592 2425 4.884668 TCCCAAAATAAGTGACTCGACT 57.115 40.909 0.00 0.00 0.00 4.18
1594 2427 5.617252 TCCCAAAATAAGTGACTCGACTTT 58.383 37.500 0.00 0.00 37.38 2.66
1595 2428 5.468746 TCCCAAAATAAGTGACTCGACTTTG 59.531 40.000 0.00 0.00 37.38 2.77
1596 2429 5.238650 CCCAAAATAAGTGACTCGACTTTGT 59.761 40.000 0.00 0.00 37.38 2.83
1598 2431 7.288672 CCAAAATAAGTGACTCGACTTTGTAC 58.711 38.462 0.00 0.00 37.38 2.90
1599 2432 7.170998 CCAAAATAAGTGACTCGACTTTGTACT 59.829 37.037 0.00 0.00 37.38 2.73
1600 2433 9.188588 CAAAATAAGTGACTCGACTTTGTACTA 57.811 33.333 0.00 0.00 37.38 1.82
1601 2434 8.967552 AAATAAGTGACTCGACTTTGTACTAG 57.032 34.615 0.00 0.00 37.38 2.57
1602 2435 4.422546 AGTGACTCGACTTTGTACTAGC 57.577 45.455 0.00 0.00 0.00 3.42
1604 2437 4.519730 AGTGACTCGACTTTGTACTAGCTT 59.480 41.667 0.00 0.00 0.00 3.74
1607 2440 6.860023 GTGACTCGACTTTGTACTAGCTTTAA 59.140 38.462 0.00 0.00 0.00 1.52
1610 2443 8.908172 ACTCGACTTTGTACTAGCTTTAATAC 57.092 34.615 0.00 0.00 0.00 1.89
1611 2444 8.517878 ACTCGACTTTGTACTAGCTTTAATACA 58.482 33.333 0.00 0.00 0.00 2.29
1612 2445 9.350357 CTCGACTTTGTACTAGCTTTAATACAA 57.650 33.333 0.00 0.00 36.11 2.41
1613 2446 9.695526 TCGACTTTGTACTAGCTTTAATACAAA 57.304 29.630 16.84 16.84 42.36 2.83
1635 2468 9.052759 ACAAAATTAGTACAAAGTCGAATCACT 57.947 29.630 0.00 0.00 0.00 3.41
1636 2469 9.878599 CAAAATTAGTACAAAGTCGAATCACTT 57.121 29.630 0.00 0.00 38.30 3.16
1641 2474 7.966157 AGTACAAAGTCGAATCACTTATACG 57.034 36.000 0.00 0.00 35.45 3.06
1642 2475 7.755591 AGTACAAAGTCGAATCACTTATACGA 58.244 34.615 0.00 0.00 35.45 3.43
1643 2476 8.239314 AGTACAAAGTCGAATCACTTATACGAA 58.761 33.333 0.00 0.00 35.45 3.85
1644 2477 7.507672 ACAAAGTCGAATCACTTATACGAAG 57.492 36.000 0.00 0.00 35.45 3.79
1645 2478 6.530534 ACAAAGTCGAATCACTTATACGAAGG 59.469 38.462 0.00 0.00 35.45 3.46
1646 2479 5.184340 AGTCGAATCACTTATACGAAGGG 57.816 43.478 0.00 0.00 34.91 3.95
1647 2480 4.885907 AGTCGAATCACTTATACGAAGGGA 59.114 41.667 0.00 0.00 34.91 4.20
1648 2481 5.008811 AGTCGAATCACTTATACGAAGGGAG 59.991 44.000 0.00 0.00 32.52 4.30
1649 2482 4.885907 TCGAATCACTTATACGAAGGGAGT 59.114 41.667 0.00 0.00 32.52 3.85
1650 2483 6.017605 GTCGAATCACTTATACGAAGGGAGTA 60.018 42.308 0.00 0.00 32.52 2.59
1651 2484 6.204301 TCGAATCACTTATACGAAGGGAGTAG 59.796 42.308 0.00 0.00 32.52 2.57
1652 2485 6.017275 CGAATCACTTATACGAAGGGAGTAGT 60.017 42.308 0.00 0.00 32.52 2.73
1653 2486 6.880942 ATCACTTATACGAAGGGAGTAGTC 57.119 41.667 0.00 0.00 32.52 2.59
1654 2487 5.999044 TCACTTATACGAAGGGAGTAGTCT 58.001 41.667 0.00 0.00 0.00 3.24
1655 2488 6.421485 TCACTTATACGAAGGGAGTAGTCTT 58.579 40.000 0.00 0.00 0.00 3.01
1656 2489 6.888632 TCACTTATACGAAGGGAGTAGTCTTT 59.111 38.462 0.00 0.00 0.00 2.52
1657 2490 7.395489 TCACTTATACGAAGGGAGTAGTCTTTT 59.605 37.037 0.00 0.00 0.00 2.27
1658 2491 8.033626 CACTTATACGAAGGGAGTAGTCTTTTT 58.966 37.037 0.00 0.00 0.00 1.94
1659 2492 9.247861 ACTTATACGAAGGGAGTAGTCTTTTTA 57.752 33.333 0.00 0.00 0.00 1.52
1660 2493 9.733219 CTTATACGAAGGGAGTAGTCTTTTTAG 57.267 37.037 0.00 0.00 0.00 1.85
1661 2494 7.951347 ATACGAAGGGAGTAGTCTTTTTAGA 57.049 36.000 0.00 0.00 0.00 2.10
1662 2495 6.023357 ACGAAGGGAGTAGTCTTTTTAGAC 57.977 41.667 0.00 0.00 39.00 2.59
1663 2496 5.537674 ACGAAGGGAGTAGTCTTTTTAGACA 59.462 40.000 7.92 0.00 41.02 3.41
1664 2497 6.210984 ACGAAGGGAGTAGTCTTTTTAGACAT 59.789 38.462 7.92 0.00 41.02 3.06
1665 2498 7.097834 CGAAGGGAGTAGTCTTTTTAGACATT 58.902 38.462 7.92 0.00 41.02 2.71
1666 2499 7.603024 CGAAGGGAGTAGTCTTTTTAGACATTT 59.397 37.037 7.92 0.00 41.02 2.32
1667 2500 9.286170 GAAGGGAGTAGTCTTTTTAGACATTTT 57.714 33.333 7.92 0.00 41.02 1.82
1730 2563 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
1731 2564 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
1732 2565 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1733 2566 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
1734 2567 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
1735 2568 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
1736 2569 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
1737 2570 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
1738 2571 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
1739 2572 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
1740 2573 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
1741 2574 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
1742 2575 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
1743 2576 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
1744 2577 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
1745 2578 7.279536 CACTCATTTTGCTCTGTATGTAGTCAT 59.720 37.037 0.00 0.00 38.00 3.06
1746 2579 7.826252 ACTCATTTTGCTCTGTATGTAGTCATT 59.174 33.333 0.00 0.00 35.70 2.57
1747 2580 8.565896 TCATTTTGCTCTGTATGTAGTCATTT 57.434 30.769 0.00 0.00 35.70 2.32
1748 2581 8.453320 TCATTTTGCTCTGTATGTAGTCATTTG 58.547 33.333 0.00 0.00 35.70 2.32
1749 2582 7.744087 TTTTGCTCTGTATGTAGTCATTTGT 57.256 32.000 0.00 0.00 35.70 2.83
1750 2583 7.744087 TTTGCTCTGTATGTAGTCATTTGTT 57.256 32.000 0.00 0.00 35.70 2.83
1751 2584 6.726258 TGCTCTGTATGTAGTCATTTGTTG 57.274 37.500 0.00 0.00 35.70 3.33
1752 2585 5.643348 TGCTCTGTATGTAGTCATTTGTTGG 59.357 40.000 0.00 0.00 35.70 3.77
1753 2586 5.874810 GCTCTGTATGTAGTCATTTGTTGGA 59.125 40.000 0.00 0.00 35.70 3.53
1754 2587 6.371548 GCTCTGTATGTAGTCATTTGTTGGAA 59.628 38.462 0.00 0.00 35.70 3.53
1755 2588 7.066284 GCTCTGTATGTAGTCATTTGTTGGAAT 59.934 37.037 0.00 0.00 35.70 3.01
1756 2589 8.492673 TCTGTATGTAGTCATTTGTTGGAATC 57.507 34.615 0.00 0.00 35.70 2.52
1757 2590 8.100164 TCTGTATGTAGTCATTTGTTGGAATCA 58.900 33.333 0.00 0.00 35.70 2.57
1758 2591 8.039603 TGTATGTAGTCATTTGTTGGAATCAC 57.960 34.615 0.00 0.00 35.70 3.06
1759 2592 5.957842 TGTAGTCATTTGTTGGAATCACC 57.042 39.130 0.00 0.00 39.54 4.02
1760 2593 7.120579 GTATGTAGTCATTTGTTGGAATCACCA 59.879 37.037 0.00 0.00 39.89 4.17
1761 2594 7.667635 TATGTAGTCATTTGTTGGAATCACCAA 59.332 33.333 0.00 0.00 43.71 3.67
1775 2608 8.477419 TGGAATCACCAAAAAGACTTCTATTT 57.523 30.769 0.00 0.00 46.75 1.40
1776 2609 8.359642 TGGAATCACCAAAAAGACTTCTATTTG 58.640 33.333 4.51 4.51 46.75 2.32
1777 2610 8.576442 GGAATCACCAAAAAGACTTCTATTTGA 58.424 33.333 10.94 2.91 35.34 2.69
1778 2611 9.617975 GAATCACCAAAAAGACTTCTATTTGAG 57.382 33.333 10.94 5.59 35.34 3.02
1779 2612 8.924511 ATCACCAAAAAGACTTCTATTTGAGA 57.075 30.769 10.94 9.10 35.34 3.27
1842 2677 7.148018 CCAATTTTGCCATCTCAATGTAGTACT 60.148 37.037 0.00 0.00 0.00 2.73
1843 2678 6.985188 TTTTGCCATCTCAATGTAGTACTC 57.015 37.500 0.00 0.00 0.00 2.59
1844 2679 4.307443 TGCCATCTCAATGTAGTACTCG 57.693 45.455 0.00 0.00 0.00 4.18
1845 2680 3.053455 GCCATCTCAATGTAGTACTCGC 58.947 50.000 0.00 0.00 0.00 5.03
1846 2681 3.243569 GCCATCTCAATGTAGTACTCGCT 60.244 47.826 0.00 0.00 0.00 4.93
1847 2682 4.541779 CCATCTCAATGTAGTACTCGCTC 58.458 47.826 0.00 0.00 0.00 5.03
1848 2683 4.541779 CATCTCAATGTAGTACTCGCTCC 58.458 47.826 0.00 0.00 0.00 4.70
1849 2684 2.612672 TCTCAATGTAGTACTCGCTCCG 59.387 50.000 0.00 0.00 0.00 4.63
1850 2685 2.355132 CTCAATGTAGTACTCGCTCCGT 59.645 50.000 0.00 0.00 0.00 4.69
1851 2686 2.751259 TCAATGTAGTACTCGCTCCGTT 59.249 45.455 0.00 0.00 0.00 4.44
1852 2687 3.192001 TCAATGTAGTACTCGCTCCGTTT 59.808 43.478 0.00 0.00 0.00 3.60
1853 2688 2.907910 TGTAGTACTCGCTCCGTTTC 57.092 50.000 0.00 0.00 0.00 2.78
1854 2689 2.153645 TGTAGTACTCGCTCCGTTTCA 58.846 47.619 0.00 0.00 0.00 2.69
1855 2690 2.553602 TGTAGTACTCGCTCCGTTTCAA 59.446 45.455 0.00 0.00 0.00 2.69
1856 2691 2.806608 AGTACTCGCTCCGTTTCAAA 57.193 45.000 0.00 0.00 0.00 2.69
1857 2692 3.102052 AGTACTCGCTCCGTTTCAAAA 57.898 42.857 0.00 0.00 0.00 2.44
1858 2693 3.660865 AGTACTCGCTCCGTTTCAAAAT 58.339 40.909 0.00 0.00 0.00 1.82
1859 2694 4.813027 AGTACTCGCTCCGTTTCAAAATA 58.187 39.130 0.00 0.00 0.00 1.40
1860 2695 4.863131 AGTACTCGCTCCGTTTCAAAATAG 59.137 41.667 0.00 0.00 0.00 1.73
1861 2696 3.921677 ACTCGCTCCGTTTCAAAATAGA 58.078 40.909 0.00 0.00 0.00 1.98
1862 2697 4.504858 ACTCGCTCCGTTTCAAAATAGAT 58.495 39.130 0.00 0.00 0.00 1.98
1863 2698 4.330074 ACTCGCTCCGTTTCAAAATAGATG 59.670 41.667 0.00 0.00 0.00 2.90
1864 2699 4.500127 TCGCTCCGTTTCAAAATAGATGA 58.500 39.130 0.00 0.00 0.00 2.92
1865 2700 4.328983 TCGCTCCGTTTCAAAATAGATGAC 59.671 41.667 0.00 0.00 0.00 3.06
1866 2701 4.330074 CGCTCCGTTTCAAAATAGATGACT 59.670 41.667 0.00 0.00 0.00 3.41
1867 2702 5.163854 CGCTCCGTTTCAAAATAGATGACTT 60.164 40.000 0.00 0.00 0.00 3.01
1868 2703 6.035650 CGCTCCGTTTCAAAATAGATGACTTA 59.964 38.462 0.00 0.00 0.00 2.24
1869 2704 7.412563 CGCTCCGTTTCAAAATAGATGACTTAA 60.413 37.037 0.00 0.00 0.00 1.85
1870 2705 7.692705 GCTCCGTTTCAAAATAGATGACTTAAC 59.307 37.037 0.00 0.00 0.00 2.01
1871 2706 8.842358 TCCGTTTCAAAATAGATGACTTAACT 57.158 30.769 0.00 0.00 0.00 2.24
1872 2707 9.280174 TCCGTTTCAAAATAGATGACTTAACTT 57.720 29.630 0.00 0.00 0.00 2.66
1873 2708 9.893305 CCGTTTCAAAATAGATGACTTAACTTT 57.107 29.630 0.00 0.00 0.00 2.66
1911 2746 9.762381 ATACAAAGTTGGGTTATCTATTTTGGA 57.238 29.630 0.00 0.00 0.00 3.53
1912 2747 8.485578 ACAAAGTTGGGTTATCTATTTTGGAA 57.514 30.769 0.00 0.00 0.00 3.53
1913 2748 8.364894 ACAAAGTTGGGTTATCTATTTTGGAAC 58.635 33.333 0.00 0.00 0.00 3.62
1914 2749 6.753107 AGTTGGGTTATCTATTTTGGAACG 57.247 37.500 0.00 0.00 0.00 3.95
1915 2750 6.243148 AGTTGGGTTATCTATTTTGGAACGT 58.757 36.000 0.00 0.00 0.00 3.99
1916 2751 7.396418 AGTTGGGTTATCTATTTTGGAACGTA 58.604 34.615 0.00 0.00 0.00 3.57
1917 2752 7.551617 AGTTGGGTTATCTATTTTGGAACGTAG 59.448 37.037 0.00 0.00 0.00 3.51
1918 2753 6.350906 TGGGTTATCTATTTTGGAACGTAGG 58.649 40.000 0.00 0.00 0.00 3.18
1919 2754 5.761726 GGGTTATCTATTTTGGAACGTAGGG 59.238 44.000 0.00 0.00 0.00 3.53
1920 2755 6.408434 GGGTTATCTATTTTGGAACGTAGGGA 60.408 42.308 0.00 0.00 0.00 4.20
1921 2756 6.704937 GGTTATCTATTTTGGAACGTAGGGAG 59.295 42.308 0.00 0.00 0.00 4.30
1922 2757 5.952347 ATCTATTTTGGAACGTAGGGAGT 57.048 39.130 0.00 0.00 0.00 3.85
1923 2758 8.416329 GTTATCTATTTTGGAACGTAGGGAGTA 58.584 37.037 0.00 0.00 0.00 2.59
1924 2759 6.212888 TCTATTTTGGAACGTAGGGAGTAC 57.787 41.667 0.00 0.00 0.00 2.73
1933 2768 5.350640 GGAACGTAGGGAGTACAATTTTGAG 59.649 44.000 0.00 0.00 0.00 3.02
1984 2819 8.150945 TGCTAAGTTCAGTTCTCTCTACAAAAT 58.849 33.333 0.00 0.00 0.00 1.82
2036 2871 9.149225 CTTTTATGCTATCTACACCATCAGATC 57.851 37.037 0.00 0.00 33.58 2.75
2202 3037 5.486526 ACTTGCTTGATCTTTCTCTTCGAT 58.513 37.500 0.00 0.00 0.00 3.59
2218 3053 7.960793 TCTCTTCGATTTCGGTTTCTATTTTC 58.039 34.615 0.00 0.00 40.29 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.870769 AGAAACATCCATCAATTGATTCCAC 58.129 36.000 18.41 5.44 31.21 4.02
137 169 1.064685 AGCCTAAGGTGGTACCAATGC 60.065 52.381 18.31 9.78 41.95 3.56
190 222 8.985315 TCATCAAAATTTCCTAGCTGATATGT 57.015 30.769 0.00 0.00 0.00 2.29
194 226 8.974238 TCATTTCATCAAAATTTCCTAGCTGAT 58.026 29.630 0.00 0.00 35.32 2.90
332 364 0.171455 CTCTTCACCGGACGAAGGAG 59.829 60.000 26.95 20.79 40.27 3.69
333 365 0.538977 ACTCTTCACCGGACGAAGGA 60.539 55.000 26.95 17.40 40.27 3.36
334 366 0.388649 CACTCTTCACCGGACGAAGG 60.389 60.000 26.95 21.59 40.27 3.46
335 367 0.314302 ACACTCTTCACCGGACGAAG 59.686 55.000 23.86 23.86 41.05 3.79
336 368 1.267806 GTACACTCTTCACCGGACGAA 59.732 52.381 9.46 9.84 0.00 3.85
337 369 0.877071 GTACACTCTTCACCGGACGA 59.123 55.000 9.46 0.01 0.00 4.20
338 370 0.594602 TGTACACTCTTCACCGGACG 59.405 55.000 9.46 0.00 0.00 4.79
339 371 2.492484 AGATGTACACTCTTCACCGGAC 59.508 50.000 9.46 0.00 0.00 4.79
340 372 2.803956 AGATGTACACTCTTCACCGGA 58.196 47.619 9.46 0.00 0.00 5.14
341 373 3.489398 GCTAGATGTACACTCTTCACCGG 60.489 52.174 0.00 0.00 0.00 5.28
342 374 3.378742 AGCTAGATGTACACTCTTCACCG 59.621 47.826 0.00 0.00 0.00 4.94
343 375 4.993029 AGCTAGATGTACACTCTTCACC 57.007 45.455 0.00 0.00 0.00 4.02
344 376 5.955488 TGAAGCTAGATGTACACTCTTCAC 58.045 41.667 16.38 7.68 35.12 3.18
345 377 6.590234 TTGAAGCTAGATGTACACTCTTCA 57.410 37.500 16.38 16.38 37.32 3.02
346 378 7.891183 TTTTGAAGCTAGATGTACACTCTTC 57.109 36.000 0.00 7.46 0.00 2.87
347 379 8.854614 AATTTTGAAGCTAGATGTACACTCTT 57.145 30.769 0.00 0.00 0.00 2.85
348 380 8.725148 CAAATTTTGAAGCTAGATGTACACTCT 58.275 33.333 0.00 5.42 0.00 3.24
349 381 8.507249 ACAAATTTTGAAGCTAGATGTACACTC 58.493 33.333 15.81 0.00 0.00 3.51
350 382 8.396272 ACAAATTTTGAAGCTAGATGTACACT 57.604 30.769 15.81 0.13 0.00 3.55
351 383 7.750903 GGACAAATTTTGAAGCTAGATGTACAC 59.249 37.037 15.81 0.00 0.00 2.90
352 384 7.446931 TGGACAAATTTTGAAGCTAGATGTACA 59.553 33.333 15.81 0.00 0.00 2.90
353 385 7.750903 GTGGACAAATTTTGAAGCTAGATGTAC 59.249 37.037 15.81 0.00 0.00 2.90
354 386 7.446931 TGTGGACAAATTTTGAAGCTAGATGTA 59.553 33.333 15.81 0.00 0.00 2.29
355 387 6.265196 TGTGGACAAATTTTGAAGCTAGATGT 59.735 34.615 15.81 0.00 0.00 3.06
356 388 6.680810 TGTGGACAAATTTTGAAGCTAGATG 58.319 36.000 15.81 0.00 0.00 2.90
357 389 6.899393 TGTGGACAAATTTTGAAGCTAGAT 57.101 33.333 15.81 0.00 0.00 1.98
358 390 6.707440 TTGTGGACAAATTTTGAAGCTAGA 57.293 33.333 15.81 0.00 32.11 2.43
359 391 7.769272 TTTTGTGGACAAATTTTGAAGCTAG 57.231 32.000 15.81 0.00 44.30 3.42
384 416 9.846248 GTGCATTGAAAAGATAGAAGTACATTT 57.154 29.630 0.00 0.00 0.00 2.32
385 417 9.236006 AGTGCATTGAAAAGATAGAAGTACATT 57.764 29.630 0.00 0.00 0.00 2.71
386 418 8.798859 AGTGCATTGAAAAGATAGAAGTACAT 57.201 30.769 0.00 0.00 0.00 2.29
387 419 8.621532 AAGTGCATTGAAAAGATAGAAGTACA 57.378 30.769 0.00 0.00 0.00 2.90
396 428 9.077885 TCCTACTTTAAAGTGCATTGAAAAGAT 57.922 29.630 27.40 1.31 40.07 2.40
397 429 8.458573 TCCTACTTTAAAGTGCATTGAAAAGA 57.541 30.769 27.40 4.71 40.07 2.52
398 430 9.528018 TTTCCTACTTTAAAGTGCATTGAAAAG 57.472 29.630 27.40 14.55 40.07 2.27
399 431 9.877178 TTTTCCTACTTTAAAGTGCATTGAAAA 57.123 25.926 27.40 24.83 40.07 2.29
400 432 9.877178 TTTTTCCTACTTTAAAGTGCATTGAAA 57.123 25.926 27.40 21.81 40.07 2.69
423 455 5.643777 CGTGTGATGGGAGAGAAGTATTTTT 59.356 40.000 0.00 0.00 0.00 1.94
424 456 5.178797 CGTGTGATGGGAGAGAAGTATTTT 58.821 41.667 0.00 0.00 0.00 1.82
425 457 4.383118 CCGTGTGATGGGAGAGAAGTATTT 60.383 45.833 0.00 0.00 0.00 1.40
426 458 3.133003 CCGTGTGATGGGAGAGAAGTATT 59.867 47.826 0.00 0.00 0.00 1.89
427 459 2.695666 CCGTGTGATGGGAGAGAAGTAT 59.304 50.000 0.00 0.00 0.00 2.12
428 460 2.100197 CCGTGTGATGGGAGAGAAGTA 58.900 52.381 0.00 0.00 0.00 2.24
429 461 0.898320 CCGTGTGATGGGAGAGAAGT 59.102 55.000 0.00 0.00 0.00 3.01
430 462 0.898320 ACCGTGTGATGGGAGAGAAG 59.102 55.000 0.00 0.00 0.00 2.85
431 463 2.225382 TACCGTGTGATGGGAGAGAA 57.775 50.000 0.00 0.00 0.00 2.87
432 464 2.225382 TTACCGTGTGATGGGAGAGA 57.775 50.000 0.00 0.00 0.00 3.10
433 465 2.430694 TCATTACCGTGTGATGGGAGAG 59.569 50.000 8.28 0.00 31.71 3.20
434 466 2.462723 TCATTACCGTGTGATGGGAGA 58.537 47.619 8.28 0.00 31.71 3.71
435 467 2.979814 TCATTACCGTGTGATGGGAG 57.020 50.000 8.28 0.00 31.71 4.30
436 468 2.835156 TCTTCATTACCGTGTGATGGGA 59.165 45.455 8.28 5.66 31.71 4.37
437 469 2.936498 GTCTTCATTACCGTGTGATGGG 59.064 50.000 8.28 4.06 31.71 4.00
438 470 2.936498 GGTCTTCATTACCGTGTGATGG 59.064 50.000 8.28 0.00 31.71 3.51
439 471 3.595173 TGGTCTTCATTACCGTGTGATG 58.405 45.455 3.44 3.44 40.08 3.07
440 472 3.973206 TGGTCTTCATTACCGTGTGAT 57.027 42.857 0.00 0.00 40.08 3.06
441 473 3.755112 TTGGTCTTCATTACCGTGTGA 57.245 42.857 0.00 0.00 40.08 3.58
442 474 5.410132 TGTTATTGGTCTTCATTACCGTGTG 59.590 40.000 0.00 0.00 40.08 3.82
443 475 5.553123 TGTTATTGGTCTTCATTACCGTGT 58.447 37.500 0.00 0.00 40.08 4.49
444 476 6.489127 TTGTTATTGGTCTTCATTACCGTG 57.511 37.500 0.00 0.00 40.08 4.94
445 477 7.110155 AGATTGTTATTGGTCTTCATTACCGT 58.890 34.615 0.00 0.00 40.08 4.83
446 478 7.553881 AGATTGTTATTGGTCTTCATTACCG 57.446 36.000 0.00 0.00 40.08 4.02
447 479 9.391006 TGTAGATTGTTATTGGTCTTCATTACC 57.609 33.333 0.00 0.00 37.53 2.85
449 481 9.952030 TGTGTAGATTGTTATTGGTCTTCATTA 57.048 29.630 0.00 0.00 0.00 1.90
450 482 8.862325 TGTGTAGATTGTTATTGGTCTTCATT 57.138 30.769 0.00 0.00 0.00 2.57
451 483 8.896744 CATGTGTAGATTGTTATTGGTCTTCAT 58.103 33.333 0.00 0.00 0.00 2.57
452 484 7.336679 CCATGTGTAGATTGTTATTGGTCTTCA 59.663 37.037 0.00 0.00 0.00 3.02
453 485 7.336931 ACCATGTGTAGATTGTTATTGGTCTTC 59.663 37.037 0.00 0.00 0.00 2.87
454 486 7.175104 ACCATGTGTAGATTGTTATTGGTCTT 58.825 34.615 0.00 0.00 0.00 3.01
455 487 6.721318 ACCATGTGTAGATTGTTATTGGTCT 58.279 36.000 0.00 0.00 0.00 3.85
456 488 6.823689 AGACCATGTGTAGATTGTTATTGGTC 59.176 38.462 9.64 9.64 40.63 4.02
457 489 6.721318 AGACCATGTGTAGATTGTTATTGGT 58.279 36.000 0.00 0.00 0.00 3.67
458 490 7.554118 AGAAGACCATGTGTAGATTGTTATTGG 59.446 37.037 0.00 0.00 0.00 3.16
459 491 8.498054 AGAAGACCATGTGTAGATTGTTATTG 57.502 34.615 0.00 0.00 0.00 1.90
463 495 9.520515 AATTAAGAAGACCATGTGTAGATTGTT 57.479 29.630 0.00 0.00 0.00 2.83
464 496 9.520515 AAATTAAGAAGACCATGTGTAGATTGT 57.479 29.630 0.00 0.00 0.00 2.71
465 497 9.994432 GAAATTAAGAAGACCATGTGTAGATTG 57.006 33.333 0.00 0.00 0.00 2.67
466 498 9.965902 AGAAATTAAGAAGACCATGTGTAGATT 57.034 29.630 0.00 0.00 0.00 2.40
468 500 9.871238 GTAGAAATTAAGAAGACCATGTGTAGA 57.129 33.333 0.00 0.00 0.00 2.59
469 501 9.653287 TGTAGAAATTAAGAAGACCATGTGTAG 57.347 33.333 0.00 0.00 0.00 2.74
471 503 8.950210 CATGTAGAAATTAAGAAGACCATGTGT 58.050 33.333 0.00 0.00 0.00 3.72
472 504 7.912250 GCATGTAGAAATTAAGAAGACCATGTG 59.088 37.037 0.00 0.00 0.00 3.21
473 505 7.611467 TGCATGTAGAAATTAAGAAGACCATGT 59.389 33.333 0.00 0.00 0.00 3.21
474 506 7.912250 GTGCATGTAGAAATTAAGAAGACCATG 59.088 37.037 0.00 0.00 0.00 3.66
475 507 7.831193 AGTGCATGTAGAAATTAAGAAGACCAT 59.169 33.333 0.00 0.00 0.00 3.55
476 508 7.168219 AGTGCATGTAGAAATTAAGAAGACCA 58.832 34.615 0.00 0.00 0.00 4.02
477 509 7.617041 AGTGCATGTAGAAATTAAGAAGACC 57.383 36.000 0.00 0.00 0.00 3.85
479 511 8.883731 GCTAAGTGCATGTAGAAATTAAGAAGA 58.116 33.333 10.04 0.00 42.31 2.87
480 512 8.125448 GGCTAAGTGCATGTAGAAATTAAGAAG 58.875 37.037 10.04 0.00 45.15 2.85
481 513 7.067008 GGGCTAAGTGCATGTAGAAATTAAGAA 59.933 37.037 10.04 0.00 45.15 2.52
482 514 6.542370 GGGCTAAGTGCATGTAGAAATTAAGA 59.458 38.462 10.04 0.00 45.15 2.10
483 515 6.318648 TGGGCTAAGTGCATGTAGAAATTAAG 59.681 38.462 10.04 0.00 45.15 1.85
484 516 6.184068 TGGGCTAAGTGCATGTAGAAATTAA 58.816 36.000 10.04 0.00 45.15 1.40
485 517 5.750524 TGGGCTAAGTGCATGTAGAAATTA 58.249 37.500 10.04 0.00 45.15 1.40
486 518 4.599041 TGGGCTAAGTGCATGTAGAAATT 58.401 39.130 10.04 0.00 45.15 1.82
487 519 4.235079 TGGGCTAAGTGCATGTAGAAAT 57.765 40.909 10.04 0.00 45.15 2.17
488 520 3.712016 TGGGCTAAGTGCATGTAGAAA 57.288 42.857 10.04 0.00 45.15 2.52
489 521 3.931907 ATGGGCTAAGTGCATGTAGAA 57.068 42.857 10.04 0.00 45.15 2.10
490 522 3.544684 CAATGGGCTAAGTGCATGTAGA 58.455 45.455 10.04 0.00 45.15 2.59
491 523 2.620115 CCAATGGGCTAAGTGCATGTAG 59.380 50.000 0.00 0.00 45.15 2.74
492 524 2.240921 TCCAATGGGCTAAGTGCATGTA 59.759 45.455 0.00 0.00 45.15 2.29
493 525 1.005805 TCCAATGGGCTAAGTGCATGT 59.994 47.619 0.00 0.00 45.15 3.21
494 526 1.679680 CTCCAATGGGCTAAGTGCATG 59.320 52.381 0.00 0.00 45.15 4.06
495 527 1.410648 CCTCCAATGGGCTAAGTGCAT 60.411 52.381 0.00 0.00 45.15 3.96
496 528 0.034186 CCTCCAATGGGCTAAGTGCA 60.034 55.000 0.00 0.00 45.15 4.57
497 529 0.034089 ACCTCCAATGGGCTAAGTGC 60.034 55.000 0.00 0.00 41.94 4.40
498 530 2.094675 CAACCTCCAATGGGCTAAGTG 58.905 52.381 0.00 0.00 0.00 3.16
499 531 1.005924 CCAACCTCCAATGGGCTAAGT 59.994 52.381 0.00 0.00 32.87 2.24
500 532 1.767759 CCAACCTCCAATGGGCTAAG 58.232 55.000 0.00 0.00 32.87 2.18
501 533 3.998560 CCAACCTCCAATGGGCTAA 57.001 52.632 0.00 0.00 32.87 3.09
506 538 5.955355 TCTTTAATTACCCAACCTCCAATGG 59.045 40.000 0.00 0.00 36.42 3.16
507 539 6.096846 CCTCTTTAATTACCCAACCTCCAATG 59.903 42.308 0.00 0.00 0.00 2.82
508 540 6.011096 TCCTCTTTAATTACCCAACCTCCAAT 60.011 38.462 0.00 0.00 0.00 3.16
509 541 5.313772 TCCTCTTTAATTACCCAACCTCCAA 59.686 40.000 0.00 0.00 0.00 3.53
510 542 4.853276 TCCTCTTTAATTACCCAACCTCCA 59.147 41.667 0.00 0.00 0.00 3.86
511 543 5.191124 TCTCCTCTTTAATTACCCAACCTCC 59.809 44.000 0.00 0.00 0.00 4.30
512 544 6.309389 TCTCCTCTTTAATTACCCAACCTC 57.691 41.667 0.00 0.00 0.00 3.85
513 545 6.713731 TTCTCCTCTTTAATTACCCAACCT 57.286 37.500 0.00 0.00 0.00 3.50
514 546 7.173032 TCTTTCTCCTCTTTAATTACCCAACC 58.827 38.462 0.00 0.00 0.00 3.77
515 547 8.678199 CATCTTTCTCCTCTTTAATTACCCAAC 58.322 37.037 0.00 0.00 0.00 3.77
516 548 7.834181 CCATCTTTCTCCTCTTTAATTACCCAA 59.166 37.037 0.00 0.00 0.00 4.12
517 549 7.036863 ACCATCTTTCTCCTCTTTAATTACCCA 60.037 37.037 0.00 0.00 0.00 4.51
518 550 7.283354 CACCATCTTTCTCCTCTTTAATTACCC 59.717 40.741 0.00 0.00 0.00 3.69
519 551 7.283354 CCACCATCTTTCTCCTCTTTAATTACC 59.717 40.741 0.00 0.00 0.00 2.85
520 552 7.829706 ACCACCATCTTTCTCCTCTTTAATTAC 59.170 37.037 0.00 0.00 0.00 1.89
521 553 7.928873 ACCACCATCTTTCTCCTCTTTAATTA 58.071 34.615 0.00 0.00 0.00 1.40
522 554 6.794534 ACCACCATCTTTCTCCTCTTTAATT 58.205 36.000 0.00 0.00 0.00 1.40
523 555 6.394345 ACCACCATCTTTCTCCTCTTTAAT 57.606 37.500 0.00 0.00 0.00 1.40
524 556 5.843019 ACCACCATCTTTCTCCTCTTTAA 57.157 39.130 0.00 0.00 0.00 1.52
525 557 5.843019 AACCACCATCTTTCTCCTCTTTA 57.157 39.130 0.00 0.00 0.00 1.85
526 558 4.731313 AACCACCATCTTTCTCCTCTTT 57.269 40.909 0.00 0.00 0.00 2.52
527 559 4.401925 CAAACCACCATCTTTCTCCTCTT 58.598 43.478 0.00 0.00 0.00 2.85
528 560 3.812167 GCAAACCACCATCTTTCTCCTCT 60.812 47.826 0.00 0.00 0.00 3.69
529 561 2.489722 GCAAACCACCATCTTTCTCCTC 59.510 50.000 0.00 0.00 0.00 3.71
530 562 2.158475 TGCAAACCACCATCTTTCTCCT 60.158 45.455 0.00 0.00 0.00 3.69
531 563 2.238521 TGCAAACCACCATCTTTCTCC 58.761 47.619 0.00 0.00 0.00 3.71
532 564 3.760684 AGATGCAAACCACCATCTTTCTC 59.239 43.478 0.00 0.00 44.15 2.87
533 565 3.760684 GAGATGCAAACCACCATCTTTCT 59.239 43.478 4.81 0.00 45.93 2.52
534 566 3.760684 AGAGATGCAAACCACCATCTTTC 59.239 43.478 4.81 0.00 45.93 2.62
535 567 3.760684 GAGAGATGCAAACCACCATCTTT 59.239 43.478 4.81 0.00 45.93 2.52
536 568 3.350833 GAGAGATGCAAACCACCATCTT 58.649 45.455 4.81 0.00 45.93 2.40
538 570 2.019984 GGAGAGATGCAAACCACCATC 58.980 52.381 0.00 0.00 38.45 3.51
539 571 1.355381 TGGAGAGATGCAAACCACCAT 59.645 47.619 0.00 0.00 0.00 3.55
540 572 0.770499 TGGAGAGATGCAAACCACCA 59.230 50.000 0.00 0.00 0.00 4.17
541 573 1.909700 TTGGAGAGATGCAAACCACC 58.090 50.000 0.00 0.00 0.00 4.61
542 574 4.009675 TGTATTGGAGAGATGCAAACCAC 58.990 43.478 0.00 0.00 0.00 4.16
543 575 4.299586 TGTATTGGAGAGATGCAAACCA 57.700 40.909 0.00 0.00 0.00 3.67
544 576 5.841957 AATGTATTGGAGAGATGCAAACC 57.158 39.130 0.00 0.00 0.00 3.27
595 627 8.079809 CCGGTGAAGACTGTACATTTAATTTTT 58.920 33.333 0.00 0.00 0.00 1.94
596 628 7.446013 TCCGGTGAAGACTGTACATTTAATTTT 59.554 33.333 0.00 0.00 0.00 1.82
597 629 6.938030 TCCGGTGAAGACTGTACATTTAATTT 59.062 34.615 0.00 0.00 0.00 1.82
598 630 6.469410 TCCGGTGAAGACTGTACATTTAATT 58.531 36.000 0.00 0.00 0.00 1.40
599 631 6.045072 TCCGGTGAAGACTGTACATTTAAT 57.955 37.500 0.00 0.00 0.00 1.40
600 632 5.471556 TCCGGTGAAGACTGTACATTTAA 57.528 39.130 0.00 0.00 0.00 1.52
601 633 5.416083 CATCCGGTGAAGACTGTACATTTA 58.584 41.667 0.00 0.00 0.00 1.40
602 634 4.253685 CATCCGGTGAAGACTGTACATTT 58.746 43.478 0.00 0.00 0.00 2.32
603 635 3.369471 CCATCCGGTGAAGACTGTACATT 60.369 47.826 0.00 0.00 0.00 2.71
604 636 2.168521 CCATCCGGTGAAGACTGTACAT 59.831 50.000 0.00 0.00 0.00 2.29
605 637 1.548719 CCATCCGGTGAAGACTGTACA 59.451 52.381 0.00 0.00 0.00 2.90
606 638 1.822990 TCCATCCGGTGAAGACTGTAC 59.177 52.381 0.00 0.00 0.00 2.90
607 639 2.100197 CTCCATCCGGTGAAGACTGTA 58.900 52.381 0.00 0.00 0.00 2.74
608 640 0.898320 CTCCATCCGGTGAAGACTGT 59.102 55.000 0.00 0.00 0.00 3.55
609 641 0.176680 CCTCCATCCGGTGAAGACTG 59.823 60.000 0.00 0.00 0.00 3.51
610 642 0.041238 TCCTCCATCCGGTGAAGACT 59.959 55.000 0.00 0.00 0.00 3.24
611 643 0.902531 TTCCTCCATCCGGTGAAGAC 59.097 55.000 0.00 0.00 0.00 3.01
612 644 1.195115 CTTCCTCCATCCGGTGAAGA 58.805 55.000 0.00 0.00 41.13 2.87
613 645 0.905357 ACTTCCTCCATCCGGTGAAG 59.095 55.000 0.00 8.01 42.73 3.02
614 646 2.241281 TACTTCCTCCATCCGGTGAA 57.759 50.000 0.00 0.00 0.00 3.18
615 647 2.471815 ATACTTCCTCCATCCGGTGA 57.528 50.000 0.00 0.00 0.00 4.02
616 648 4.682778 TTAATACTTCCTCCATCCGGTG 57.317 45.455 0.00 0.00 0.00 4.94
617 649 5.155905 AGATTAATACTTCCTCCATCCGGT 58.844 41.667 0.00 0.00 0.00 5.28
618 650 5.746990 AGATTAATACTTCCTCCATCCGG 57.253 43.478 0.00 0.00 0.00 5.14
715 1245 4.288626 CCTAAGGCTGGCTATAATGGGTAA 59.711 45.833 3.41 0.00 0.00 2.85
776 1564 8.894768 ATCTAGAAGTAGCAATTAATGTGGTC 57.105 34.615 0.00 1.30 0.00 4.02
854 1654 2.029828 GCCGAGACATGGTCGAATAGAT 60.030 50.000 18.37 0.00 39.92 1.98
856 1656 1.772182 GCCGAGACATGGTCGAATAG 58.228 55.000 18.37 5.61 39.92 1.73
1028 1843 2.069430 TAGATGATGGCGGCCACCA 61.069 57.895 26.48 23.49 45.82 4.17
1096 1911 1.997606 CTTCGGGTCGTTGATGTTACC 59.002 52.381 0.00 0.00 0.00 2.85
1184 1999 3.497115 TGCCCAGCACCACCTTGA 61.497 61.111 0.00 0.00 31.71 3.02
1237 2052 3.173240 GTTCAGCGCCTCGACGAC 61.173 66.667 2.29 0.00 34.06 4.34
1312 2127 1.908340 AAGGAGATGAGCTTGCGCCT 61.908 55.000 4.18 0.00 36.60 5.52
1324 2139 3.155167 GACCGGGGCGAAGGAGAT 61.155 66.667 6.32 0.00 0.00 2.75
1385 2200 0.897621 AGCTGTGACGATGTCCATCA 59.102 50.000 7.94 0.00 37.69 3.07
1386 2201 1.134995 TGAGCTGTGACGATGTCCATC 60.135 52.381 0.00 0.00 34.56 3.51
1387 2202 0.897621 TGAGCTGTGACGATGTCCAT 59.102 50.000 0.00 0.00 0.00 3.41
1388 2203 0.038251 GTGAGCTGTGACGATGTCCA 60.038 55.000 0.00 0.00 0.00 4.02
1418 2233 3.411446 TGTAACTTGTTGATGCCTCAGG 58.589 45.455 0.00 0.00 31.68 3.86
1419 2234 4.318332 TCTGTAACTTGTTGATGCCTCAG 58.682 43.478 0.00 0.00 31.68 3.35
1431 2246 5.633830 AATGCAGTTGGATCTGTAACTTG 57.366 39.130 0.00 5.89 35.08 3.16
1483 2298 2.589798 TTTCTAGAATACGCACGGGG 57.410 50.000 5.89 0.00 0.00 5.73
1510 2343 3.573967 CCACATTTTCCACCAGTTAGCTT 59.426 43.478 0.00 0.00 0.00 3.74
1528 2361 2.972713 GAGGGAGTATAAGGCATCCACA 59.027 50.000 0.00 0.00 33.24 4.17
1550 2383 5.279056 GGGATGGAGAGAGTATTTAGGAACG 60.279 48.000 0.00 0.00 0.00 3.95
1553 2386 5.418692 TGGGATGGAGAGAGTATTTAGGA 57.581 43.478 0.00 0.00 0.00 2.94
1554 2387 6.500589 TTTGGGATGGAGAGAGTATTTAGG 57.499 41.667 0.00 0.00 0.00 2.69
1557 2390 8.560903 ACTTATTTTGGGATGGAGAGAGTATTT 58.439 33.333 0.00 0.00 0.00 1.40
1562 2395 5.819901 GTCACTTATTTTGGGATGGAGAGAG 59.180 44.000 0.00 0.00 0.00 3.20
1563 2396 5.488919 AGTCACTTATTTTGGGATGGAGAGA 59.511 40.000 0.00 0.00 0.00 3.10
1564 2397 5.749462 AGTCACTTATTTTGGGATGGAGAG 58.251 41.667 0.00 0.00 0.00 3.20
1565 2398 5.626809 CGAGTCACTTATTTTGGGATGGAGA 60.627 44.000 0.00 0.00 0.00 3.71
1566 2399 4.572389 CGAGTCACTTATTTTGGGATGGAG 59.428 45.833 0.00 0.00 0.00 3.86
1567 2400 4.224147 TCGAGTCACTTATTTTGGGATGGA 59.776 41.667 0.00 0.00 0.00 3.41
1569 2402 5.178797 AGTCGAGTCACTTATTTTGGGATG 58.821 41.667 0.00 0.00 0.00 3.51
1570 2403 5.422214 AGTCGAGTCACTTATTTTGGGAT 57.578 39.130 0.00 0.00 0.00 3.85
1572 2405 5.238650 ACAAAGTCGAGTCACTTATTTTGGG 59.761 40.000 11.39 0.00 35.45 4.12
1573 2406 6.300354 ACAAAGTCGAGTCACTTATTTTGG 57.700 37.500 11.39 0.00 35.45 3.28
1574 2407 8.073355 AGTACAAAGTCGAGTCACTTATTTTG 57.927 34.615 0.00 7.24 35.45 2.44
1576 2409 7.541437 GCTAGTACAAAGTCGAGTCACTTATTT 59.459 37.037 0.00 1.15 35.45 1.40
1577 2410 7.028361 GCTAGTACAAAGTCGAGTCACTTATT 58.972 38.462 0.00 2.93 35.45 1.40
1579 2412 5.704515 AGCTAGTACAAAGTCGAGTCACTTA 59.295 40.000 0.00 0.00 35.45 2.24
1580 2413 4.519730 AGCTAGTACAAAGTCGAGTCACTT 59.480 41.667 0.00 3.11 38.30 3.16
1582 2415 4.422546 AGCTAGTACAAAGTCGAGTCAC 57.577 45.455 0.00 0.00 0.00 3.67
1584 2417 9.008289 GTATTAAAGCTAGTACAAAGTCGAGTC 57.992 37.037 0.00 0.00 0.00 3.36
1585 2418 8.517878 TGTATTAAAGCTAGTACAAAGTCGAGT 58.482 33.333 0.00 0.00 29.89 4.18
1586 2419 8.906636 TGTATTAAAGCTAGTACAAAGTCGAG 57.093 34.615 0.00 0.00 29.89 4.04
1587 2420 9.695526 TTTGTATTAAAGCTAGTACAAAGTCGA 57.304 29.630 11.30 0.00 41.52 4.20
1610 2443 9.878599 AAGTGATTCGACTTTGTACTAATTTTG 57.121 29.630 0.00 0.00 31.92 2.44
1615 2448 9.494479 CGTATAAGTGATTCGACTTTGTACTAA 57.506 33.333 0.00 0.00 37.38 2.24
1616 2449 8.882736 TCGTATAAGTGATTCGACTTTGTACTA 58.117 33.333 0.00 0.00 37.38 1.82
1617 2450 7.755591 TCGTATAAGTGATTCGACTTTGTACT 58.244 34.615 0.00 0.00 37.38 2.73
1618 2451 7.959718 TCGTATAAGTGATTCGACTTTGTAC 57.040 36.000 0.00 0.00 37.38 2.90
1619 2452 7.699391 CCTTCGTATAAGTGATTCGACTTTGTA 59.301 37.037 0.00 0.00 37.11 2.41
1620 2453 6.530534 CCTTCGTATAAGTGATTCGACTTTGT 59.469 38.462 0.00 0.00 37.11 2.83
1621 2454 6.019801 CCCTTCGTATAAGTGATTCGACTTTG 60.020 42.308 0.00 0.00 37.11 2.77
1622 2455 6.040878 CCCTTCGTATAAGTGATTCGACTTT 58.959 40.000 0.00 0.00 37.11 2.66
1623 2456 5.359009 TCCCTTCGTATAAGTGATTCGACTT 59.641 40.000 0.00 0.00 37.11 3.01
1624 2457 4.885907 TCCCTTCGTATAAGTGATTCGACT 59.114 41.667 0.00 0.00 37.11 4.18
1625 2458 5.179045 TCCCTTCGTATAAGTGATTCGAC 57.821 43.478 0.00 0.00 37.11 4.20
1626 2459 4.885907 ACTCCCTTCGTATAAGTGATTCGA 59.114 41.667 0.00 0.00 35.77 3.71
1627 2460 5.184340 ACTCCCTTCGTATAAGTGATTCG 57.816 43.478 0.00 0.00 0.00 3.34
1628 2461 7.229106 AGACTACTCCCTTCGTATAAGTGATTC 59.771 40.741 0.00 0.00 0.00 2.52
1629 2462 7.061688 AGACTACTCCCTTCGTATAAGTGATT 58.938 38.462 0.00 0.00 0.00 2.57
1630 2463 6.603224 AGACTACTCCCTTCGTATAAGTGAT 58.397 40.000 0.00 0.00 0.00 3.06
1631 2464 5.999044 AGACTACTCCCTTCGTATAAGTGA 58.001 41.667 0.00 0.00 0.00 3.41
1632 2465 6.696441 AAGACTACTCCCTTCGTATAAGTG 57.304 41.667 0.00 0.00 0.00 3.16
1633 2466 7.715266 AAAAGACTACTCCCTTCGTATAAGT 57.285 36.000 0.00 0.00 0.00 2.24
1634 2467 9.733219 CTAAAAAGACTACTCCCTTCGTATAAG 57.267 37.037 0.00 0.00 0.00 1.73
1635 2468 9.466497 TCTAAAAAGACTACTCCCTTCGTATAA 57.534 33.333 0.00 0.00 0.00 0.98
1636 2469 8.897752 GTCTAAAAAGACTACTCCCTTCGTATA 58.102 37.037 0.00 0.00 36.01 1.47
1637 2470 7.395489 TGTCTAAAAAGACTACTCCCTTCGTAT 59.605 37.037 7.04 0.00 39.41 3.06
1638 2471 6.716628 TGTCTAAAAAGACTACTCCCTTCGTA 59.283 38.462 7.04 0.00 39.41 3.43
1639 2472 5.537674 TGTCTAAAAAGACTACTCCCTTCGT 59.462 40.000 7.04 0.00 39.41 3.85
1640 2473 6.022163 TGTCTAAAAAGACTACTCCCTTCG 57.978 41.667 7.04 0.00 39.41 3.79
1641 2474 8.850007 AAATGTCTAAAAAGACTACTCCCTTC 57.150 34.615 7.04 0.00 39.41 3.46
1668 2501 9.653287 CATACATCCGTATGTTATAGTCCATTT 57.347 33.333 0.00 0.00 46.70 2.32
1710 2543 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
1711 2544 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
1712 2545 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
1713 2546 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
1714 2547 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
1715 2548 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
1716 2549 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
1717 2550 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
1718 2551 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
1719 2552 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
1720 2553 6.701340 TGACTACATACAGAGCAAAATGAGT 58.299 36.000 0.00 0.00 0.00 3.41
1721 2554 7.783090 ATGACTACATACAGAGCAAAATGAG 57.217 36.000 0.00 0.00 34.71 2.90
1722 2555 8.453320 CAAATGACTACATACAGAGCAAAATGA 58.547 33.333 0.00 0.00 35.50 2.57
1723 2556 8.239314 ACAAATGACTACATACAGAGCAAAATG 58.761 33.333 0.00 0.00 35.50 2.32
1724 2557 8.340618 ACAAATGACTACATACAGAGCAAAAT 57.659 30.769 0.00 0.00 35.50 1.82
1725 2558 7.744087 ACAAATGACTACATACAGAGCAAAA 57.256 32.000 0.00 0.00 35.50 2.44
1726 2559 7.308529 CCAACAAATGACTACATACAGAGCAAA 60.309 37.037 0.00 0.00 35.50 3.68
1727 2560 6.149308 CCAACAAATGACTACATACAGAGCAA 59.851 38.462 0.00 0.00 35.50 3.91
1728 2561 5.643348 CCAACAAATGACTACATACAGAGCA 59.357 40.000 0.00 0.00 35.50 4.26
1729 2562 5.874810 TCCAACAAATGACTACATACAGAGC 59.125 40.000 0.00 0.00 35.50 4.09
1730 2563 7.905604 TTCCAACAAATGACTACATACAGAG 57.094 36.000 0.00 0.00 35.50 3.35
1731 2564 8.100164 TGATTCCAACAAATGACTACATACAGA 58.900 33.333 0.00 0.00 35.50 3.41
1732 2565 8.177663 GTGATTCCAACAAATGACTACATACAG 58.822 37.037 0.00 0.00 35.50 2.74
1733 2566 7.120579 GGTGATTCCAACAAATGACTACATACA 59.879 37.037 0.00 0.00 34.63 2.29
1734 2567 7.120579 TGGTGATTCCAACAAATGACTACATAC 59.879 37.037 0.00 0.00 44.12 2.39
1735 2568 7.171653 TGGTGATTCCAACAAATGACTACATA 58.828 34.615 0.00 0.00 44.12 2.29
1736 2569 6.009589 TGGTGATTCCAACAAATGACTACAT 58.990 36.000 0.00 0.00 44.12 2.29
1737 2570 5.380900 TGGTGATTCCAACAAATGACTACA 58.619 37.500 0.00 0.00 44.12 2.74
1738 2571 5.957842 TGGTGATTCCAACAAATGACTAC 57.042 39.130 0.00 0.00 44.12 2.73
1750 2583 8.359642 CAAATAGAAGTCTTTTTGGTGATTCCA 58.640 33.333 13.40 0.00 45.60 3.53
1751 2584 8.576442 TCAAATAGAAGTCTTTTTGGTGATTCC 58.424 33.333 18.26 0.00 41.80 3.01
1752 2585 9.617975 CTCAAATAGAAGTCTTTTTGGTGATTC 57.382 33.333 18.26 0.00 41.80 2.52
1753 2586 9.354673 TCTCAAATAGAAGTCTTTTTGGTGATT 57.645 29.630 18.26 0.00 41.80 2.57
1754 2587 8.924511 TCTCAAATAGAAGTCTTTTTGGTGAT 57.075 30.769 18.26 0.00 41.80 3.06
1755 2588 8.621286 GTTCTCAAATAGAAGTCTTTTTGGTGA 58.379 33.333 18.26 14.87 44.94 4.02
1756 2589 7.587757 CGTTCTCAAATAGAAGTCTTTTTGGTG 59.412 37.037 18.26 13.50 44.94 4.17
1757 2590 7.255139 CCGTTCTCAAATAGAAGTCTTTTTGGT 60.255 37.037 18.26 0.00 44.94 3.67
1758 2591 7.041372 TCCGTTCTCAAATAGAAGTCTTTTTGG 60.041 37.037 18.26 12.03 44.94 3.28
1759 2592 7.861630 TCCGTTCTCAAATAGAAGTCTTTTTG 58.138 34.615 14.50 14.50 44.94 2.44
1760 2593 7.173390 CCTCCGTTCTCAAATAGAAGTCTTTTT 59.827 37.037 0.00 0.00 44.94 1.94
1761 2594 6.651225 CCTCCGTTCTCAAATAGAAGTCTTTT 59.349 38.462 0.00 0.00 44.94 2.27
1762 2595 6.166982 CCTCCGTTCTCAAATAGAAGTCTTT 58.833 40.000 0.00 0.00 44.94 2.52
1763 2596 5.337652 CCCTCCGTTCTCAAATAGAAGTCTT 60.338 44.000 0.00 0.00 44.94 3.01
1764 2597 4.160626 CCCTCCGTTCTCAAATAGAAGTCT 59.839 45.833 0.00 0.00 44.94 3.24
1765 2598 4.159879 TCCCTCCGTTCTCAAATAGAAGTC 59.840 45.833 0.00 0.00 44.94 3.01
1766 2599 4.094476 TCCCTCCGTTCTCAAATAGAAGT 58.906 43.478 0.00 0.00 44.94 3.01
1767 2600 4.160626 ACTCCCTCCGTTCTCAAATAGAAG 59.839 45.833 0.00 0.00 44.94 2.85
1768 2601 4.094476 ACTCCCTCCGTTCTCAAATAGAA 58.906 43.478 0.00 0.00 42.07 2.10
1769 2602 3.709587 ACTCCCTCCGTTCTCAAATAGA 58.290 45.455 0.00 0.00 0.00 1.98
1770 2603 4.645588 AGTACTCCCTCCGTTCTCAAATAG 59.354 45.833 0.00 0.00 0.00 1.73
1771 2604 4.607239 AGTACTCCCTCCGTTCTCAAATA 58.393 43.478 0.00 0.00 0.00 1.40
1772 2605 3.442076 AGTACTCCCTCCGTTCTCAAAT 58.558 45.455 0.00 0.00 0.00 2.32
1773 2606 2.885616 AGTACTCCCTCCGTTCTCAAA 58.114 47.619 0.00 0.00 0.00 2.69
1774 2607 2.599408 AGTACTCCCTCCGTTCTCAA 57.401 50.000 0.00 0.00 0.00 3.02
1775 2608 2.306805 TGTAGTACTCCCTCCGTTCTCA 59.693 50.000 0.00 0.00 0.00 3.27
1776 2609 2.996631 TGTAGTACTCCCTCCGTTCTC 58.003 52.381 0.00 0.00 0.00 2.87
1777 2610 3.666345 ATGTAGTACTCCCTCCGTTCT 57.334 47.619 0.00 0.00 0.00 3.01
1778 2611 4.732672 AAATGTAGTACTCCCTCCGTTC 57.267 45.455 0.00 0.00 0.00 3.95
1779 2612 4.529377 TGAAAATGTAGTACTCCCTCCGTT 59.471 41.667 0.00 0.00 0.00 4.44
1842 2677 4.328983 GTCATCTATTTTGAAACGGAGCGA 59.671 41.667 0.00 0.00 0.00 4.93
1843 2678 4.330074 AGTCATCTATTTTGAAACGGAGCG 59.670 41.667 0.00 0.00 0.00 5.03
1844 2679 5.803020 AGTCATCTATTTTGAAACGGAGC 57.197 39.130 0.00 0.00 0.00 4.70
1845 2680 8.936864 AGTTAAGTCATCTATTTTGAAACGGAG 58.063 33.333 0.00 0.00 0.00 4.63
1846 2681 8.842358 AGTTAAGTCATCTATTTTGAAACGGA 57.158 30.769 0.00 0.00 0.00 4.69
1847 2682 9.893305 AAAGTTAAGTCATCTATTTTGAAACGG 57.107 29.630 0.00 0.00 0.00 4.44
1885 2720 9.762381 TCCAAAATAGATAACCCAACTTTGTAT 57.238 29.630 0.00 0.00 0.00 2.29
1886 2721 9.589461 TTCCAAAATAGATAACCCAACTTTGTA 57.411 29.630 0.00 0.00 0.00 2.41
1887 2722 8.364894 GTTCCAAAATAGATAACCCAACTTTGT 58.635 33.333 0.00 0.00 0.00 2.83
1888 2723 7.540745 CGTTCCAAAATAGATAACCCAACTTTG 59.459 37.037 0.00 0.00 0.00 2.77
1889 2724 7.231925 ACGTTCCAAAATAGATAACCCAACTTT 59.768 33.333 0.00 0.00 0.00 2.66
1890 2725 6.717997 ACGTTCCAAAATAGATAACCCAACTT 59.282 34.615 0.00 0.00 0.00 2.66
1891 2726 6.243148 ACGTTCCAAAATAGATAACCCAACT 58.757 36.000 0.00 0.00 0.00 3.16
1892 2727 6.505044 ACGTTCCAAAATAGATAACCCAAC 57.495 37.500 0.00 0.00 0.00 3.77
1893 2728 6.824704 CCTACGTTCCAAAATAGATAACCCAA 59.175 38.462 0.00 0.00 0.00 4.12
1894 2729 6.350906 CCTACGTTCCAAAATAGATAACCCA 58.649 40.000 0.00 0.00 0.00 4.51
1895 2730 5.761726 CCCTACGTTCCAAAATAGATAACCC 59.238 44.000 0.00 0.00 0.00 4.11
1896 2731 6.585416 TCCCTACGTTCCAAAATAGATAACC 58.415 40.000 0.00 0.00 0.00 2.85
1897 2732 7.270779 ACTCCCTACGTTCCAAAATAGATAAC 58.729 38.462 0.00 0.00 0.00 1.89
1898 2733 7.427989 ACTCCCTACGTTCCAAAATAGATAA 57.572 36.000 0.00 0.00 0.00 1.75
1899 2734 7.560991 TGTACTCCCTACGTTCCAAAATAGATA 59.439 37.037 0.00 0.00 0.00 1.98
1900 2735 5.952347 ACTCCCTACGTTCCAAAATAGAT 57.048 39.130 0.00 0.00 0.00 1.98
1901 2736 5.716228 TGTACTCCCTACGTTCCAAAATAGA 59.284 40.000 0.00 0.00 0.00 1.98
1902 2737 5.969423 TGTACTCCCTACGTTCCAAAATAG 58.031 41.667 0.00 0.00 0.00 1.73
1903 2738 5.999205 TGTACTCCCTACGTTCCAAAATA 57.001 39.130 0.00 0.00 0.00 1.40
1904 2739 4.895668 TGTACTCCCTACGTTCCAAAAT 57.104 40.909 0.00 0.00 0.00 1.82
1905 2740 4.686191 TTGTACTCCCTACGTTCCAAAA 57.314 40.909 0.00 0.00 0.00 2.44
1906 2741 4.895668 ATTGTACTCCCTACGTTCCAAA 57.104 40.909 0.00 0.00 0.00 3.28
1907 2742 4.895668 AATTGTACTCCCTACGTTCCAA 57.104 40.909 0.00 0.00 0.00 3.53
1908 2743 4.895668 AAATTGTACTCCCTACGTTCCA 57.104 40.909 0.00 0.00 0.00 3.53
1909 2744 5.240121 TCAAAATTGTACTCCCTACGTTCC 58.760 41.667 0.00 0.00 0.00 3.62
1910 2745 5.930569 ACTCAAAATTGTACTCCCTACGTTC 59.069 40.000 0.00 0.00 0.00 3.95
1911 2746 5.861727 ACTCAAAATTGTACTCCCTACGTT 58.138 37.500 0.00 0.00 0.00 3.99
1912 2747 5.479124 ACTCAAAATTGTACTCCCTACGT 57.521 39.130 0.00 0.00 0.00 3.57
1913 2748 6.425721 TGAAACTCAAAATTGTACTCCCTACG 59.574 38.462 0.00 0.00 0.00 3.51
1914 2749 7.739498 TGAAACTCAAAATTGTACTCCCTAC 57.261 36.000 0.00 0.00 0.00 3.18
1915 2750 8.754991 TTTGAAACTCAAAATTGTACTCCCTA 57.245 30.769 0.00 0.00 42.72 3.53
1916 2751 7.654022 TTTGAAACTCAAAATTGTACTCCCT 57.346 32.000 0.00 0.00 42.72 4.20
1933 2768 6.436843 TTCTGTTCTCTCAGGTTTTGAAAC 57.563 37.500 0.00 0.00 34.81 2.78
1941 2776 5.012561 ACTTAGCAATTCTGTTCTCTCAGGT 59.987 40.000 0.00 0.00 36.25 4.00
2036 2871 3.057736 CCTGTTCTGCAAAACCATCTCAG 60.058 47.826 0.00 0.00 0.00 3.35
2202 3037 7.701809 ATTTTTGCGAAAATAGAAACCGAAA 57.298 28.000 20.85 0.00 42.21 3.46
2218 3053 0.667184 AGCCGAAGCCAATTTTTGCG 60.667 50.000 0.00 0.00 41.25 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.