>input_sequence_82791
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------------------------------------------------------ATGAGGACCAGCATCGCCCTCGTCAT
CGTGGTGGCCGCCATCATCTACGCCGTCGCCATGCCCGCCACGGCGATGCCCGGCGGGTGGGAACACATCGGTAACATCA
ACGACCCGAAGATCCAGGGGCTCGGCCGTTGGGCGGTGGCGGAGCACGTGAAGCAGGCGGGCGGCCGGCTCAGGTTCATC
AAGGTGGTGCTGGGCACGGTGCAGGTGGTGTCGGGCTTCAACTACCGGCTCGTCGTCGAGGCGCTGAACGGCGCCGGCAA
GAAGGACGCGTACAAGGTGGAGGTGTACGAGGCGGCAGCCAACAAAAGGCGCAAGCTCATCTCCTTCGCCCCGGTCGCCC
AAGAGGCGTAG---------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G052000
CAGCATTCATAACAGCAAATTAATATCATTAGATCCATCGTGGAATCAATTGATGGATGTTTCTATAAGCAAACATTTAA
A-------------------------------TCAGTATCAGATATTGATATGGAACCAATTAATGGACGCCTTTTTTTT
CTAAGGAAGCATTGGTACCACCTTAGGCTAACCGTAATGGGGATGCCATAGTTAGTATCATACATATCAGCTAGGAAATT
TTGATGAAATGACATAGAATTAAGTGAAAAAATAGAATTGATTATTGTATTATGATACCATATCATAATAAATATTATAC
TAGTATGTGTCTTGCATGTCAATAAATAGGATCATCTGAGATACTCCTTCGTCCGGTGAAGAGTGTACATCTAGCTTCAA
AATTTGTCCACAAAAAAATGTACTTCTATCTTTTCAATGCACTTTAAAGTAGGAAAAAATACTTCTCTCCCATCACACGG
TAATGAAGACCAATAACAATCTACACATGGTCTTCTTAATTTCTACATGCACTTAGCCCATTGGAGGTTGGGTAATTAAA
GAGGAGAAAGATGGTGGTTTGCATCTCTCCAATACATTTTTTACTTAACTCCATAATTTATCCTAAAAAAATTAAATGTA
CAGTCTTCACCGGATGGAGGAAGTATTAATCT------------------------------------------------
------------------------------------ATATTGCTATATATTACAGAGATAGTATTATACACTAGTATCAC
ATGCATGATACTAACTTGTA------------------------------------------------------------
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-----------------ACTT-----------------ATGATATTACCCATTATAGCCAGCCTTA---GGCATGCATCA
AG------------------------------------------------------------------------------
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-----------------AATGTATCGGTATGCATCAAGGGATCGACCACATTAATTGCTACTTCTAGATACA--------
----ATTAGATAGATATATGGTGTATATGACATGCATTCAGTTATCTCCGTCTATCTATTCGACCATGTCTCGGCGCTTC
TATTTAAACGCCCCCGGTTCACATGTCAGTGATCCTCGACTGATCTGAGTATCTGACCGCTCTCA-------AGCTTCCA
AACCTCACTGATAGATCCAAAGCCAGCACACCA--------CAAACCAGCAGCCATGAGGACCAGCATCGCCCTCGTCAT
CGTGGTGGCCGCCATCATCTACGCCGTCGCCATGCCCGCCACGGCGATGCCCGGCGGGTGGGAACACATCGGTAACATCA
ACGACCCGAAGATCCAGGGGCTCGGCCGTTGGGCGGTGGCGGAGCACGTGAAGCAGGCGGGCGGCCGGCTCAGGTTCATC
AAGGTGGTGCTGGGCACGGTGCAGGTGGTGTCGGGCTTCAACTACCGGCTCGTCGTCGAGGCGCTGAACGGCGCCGGCAA
GAAGGACGCGTACAAGGTGGAGGTGTACGAGGCGGCAGCCAACAAAAGGCGCAAGCTCATCTCCTTCGCCCCGGTCGCCC
AAGAGGCGTAGGCCTTTTGGTGTATTTGTAATTCTTGATTGATGGACATCGTCACAGCTCACAAGCAATATTCCTGAGGC
ATCAACAAGTTACAGATCCAACTGCATTACCTTTGACTCACATAATCTAAATGTCACCCCCGTGCGTATTCTAGAAAAA-
--------------AAA---TTAAGCTAACTGGTGGAAAATGTGGATGCCTTATACTCCCTCCGTTCCTAAATACTCTCT
CCATCCCAAAATAAGTGACTCGACTTTGTACTAGCTTTAATACAAAATTAGTACAAAGTCGAATCACTTATACGAAGGGA
GTAGTCTTTTTAGACATTTTAAATGGACTATAACATACGGATGTATGTAGACATATTTTAAAGTGTAGATTCACTCATTT
TGCTCTGTATGTAGTCATTTGTTGGAATCACCAAAAAGACTTCTATTTGAGAACGGAGGGAGTACTACATTTTCAAACG-
A-GGGGTGCACCAATTTTGCCATCTCAATGTAGTACTCGCTCCGTTTCAAAATAGATGACTTAACTTTGTATTACCTTAA
TACAAAGTTGGGTTATCTATTTTGGAACGTAGGGAGTACAATTTTGAGTTTCAAAACCTGAGAGAACAGAATTGCTAAGT
TCAGTTCTCTCTACAAAATGTCAAAGCCTTCTTTGCCACCAAAGCTTTTATGCTATCTACACCATCAGATCTGAGATGGT
TTTGCAGAACAGGCATCTGGGTTCTACAGTTGAGGAGCCATCCAGTCAGTACTCACAAAGTCACAAGCTTAACTCATGCC
TCCACGAGCCCTTTGCTACGTGCTTTCTTCTTCCCGCCCTTCCCCTCCTTTGGACTTGCTTGATCTTTCTCTTCGATTTC
GGTTTCTATTTTCGCAAAAATTGGCTTCGGCTCCATCATTGCCTGGCCTGCTTTAAGGGCTCCCCATTTGGTATCATCCT
GCAGGGCAGTTAGCACAGGGTTGTAAGCATGTCGCGCCACTGGAAATTTTTTATATTGCATATCTGCTATT
>chr4D_1
CAGCATTCATAACAGCGAATTAATATCATTAGATCCATCATGGAATCAATTGATGGATGTTTCTATAAGCAAACATTTAA
A-------------------------------TCAGTATCAGATATTGATATGGAACCAATTAGTGGACGC--TTTTTTT
CTAAGGAAACATTGGTACCACCTTAGGCTAACCGTAATGGGGGTGTCATAGTTA-TATCATGCATGTTAGCTAGGAATTT
TTTATGAGGTGGCATAGAATTAAGTGAAAAAATGGAATTGATTATCGTATTATGACATCGTATCATAATAAATATTGTAC
TAGTATGTGTCTTGCATGTCAATAAATAGGATCATCTGAGATA-------------------------------------
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-------------------------TTAATCT------------------------------------------------
------------------------------------ATAATACTATACATTACAGAGATACTATCATACACTAGTATCAT
ATGCATGATACTAACTTGTACTCCCTCCGTTTTTAAATATAAGTCTTTCTAGAGATTTCAATATGGACTACATACGGATG
TATATAGACGTAGTCTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTCCATATTG--------------------
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-----------------------AAATCTCTAAAAAGACTTATATTTAAGAACGGAGGGAGTAACTTGTGATACTACACT
CCTCACAAAAAAAAAGAACTT-----------------GTGATACTACCCATTACACCCAGCCTTATAGGGCATGCATCA
AGAATGTGGTTGAGATGGTTAGGTGGATAGTGGTATCCCCAACCCACCAGGGTTCAAATCCTGGTGTTCGCATTATTCCT
GGATTTATTTTAGGATTTCCGGCGATGCACTTTCAGTGGGAGGAGACGTTCCCGTCGACGACAAGGCGCCTATGGTGGCT
TTCGTAAATCTCGGGGTAGGGTGTACGTGTGTGTTTCATAGAGATGAGTGTATGCGCGTATATATGAGCGCTTGTGTCTG
TACTGATGCTCAAAAAAAATGTATCGGTATGCATCAAGGGATCAACCACATTAATTGATACTTTTAGATACAAAGCAATA
ATTTATTAGATAGATATATGGTGTATATGACATGCATTTAGTTATCTCCGTCTGTGTATTCGACCATGTCCCAGCGCTTC
TATTTAAACGCCCCCGGTTCACGTGTCAGTG--CCCCGACTGATCTGAGTATCTGACCGCTCTTA-------AGCTTCCA
AACCTCACTGATAGATCCAAAGCCAGCACAGCGA--------AAACCAGCAGCCATGAGGACCAGCATCACCCTCGTCAT
CGGGGTGGCCGCCATCATCTACGCGGTCGCCATGCCCGCCACGGCGATGCCCGGCGGGTGGGAACACATCCGTAACATCA
ACGACCCGAAGATCCAGGGGCTCGGCAATTGGGCGGTGGGGGAGCACGTGAAGCAGGCGGGCGGCCGGCTCAGGTTCAGC
AAGGTGGTGCTGGGCACGGTGCAGGTGGTGTCAGGCTTCAACTACCGGCTCCTCGTCCAGGCGCTGAACGTCGCCGGCAA
GAAGGACGCGTACAAGGTGGAGGTGTACGAGGCGGCGGCCAACAAAGGCCGCAAGCTCGTCTCCTTCACCCCGGTCGCCG
AAGAGGCGTAGGCCTTTTGGTGCATTTGTAATTCTTGAT----GGACATCGCCACAGCTCACAAGCAATATTAATGAGGC
ATCAAAAAGTTACAGATCCAACTGCATTACCTTTGACTCACATAATCTAAATGTCACTCTCGTGTGTATTCTAGAAAAG-
--------------AAAATTTTGAGCTAACTGGTGGAATACGTGAATGCCTTA---------------------------
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--------------------------------------------------------------TACTACATTTTCAAACG-
AGGGGGTGCACCAATTTTGCCATCTCAATGTAGTAC--------------------------------------------
---------------------------------------AATTTTGAATTTCAAAGCCTGAGAGAACAGAATTGCTAAGT
TCAGTTCTCTCTACAAAAAGTCAAAGCCTTCTTTGCCACCAAAGCTTTTATGCTATCTACACCATCAGCTATGAGATGGT
TTTGCAGAACAGGCATCTGGGTTCTACAGTTGAGGAGCCATCCAGTCAGTACTCACAAAGTCACAAGCTTAACTCATGCC
TCCACGAGCCCTTTGCTACGTGCTTTCTTCTTCCCGCCCTTCCCCTCCTTTGGACTTGCTTGATCTTTCTCTTCGACTTC
GGTTTCTATTTTGGCAAAAATTGGCTTCGGATCCATCATTGCCTGGCCTGCTTTAAGGGCTCCCCATTTGGTATCATCCT
GCAGGGCAGTTAGCACAGGGTTGTAAGCATGTCGCGCCACTGGAAATTTTTTATATTGCATATCTGCTATT
>chr4B_1
CAGCATTCATAACAGCAAATTAATATCATTAGATCCATCAT-GAATCAATTGATGGATGTTTCTAAAAGCAAACACTTAA
ACCATACCAAATTAAATTATGTATACGCTAAATCAATATCAGATATTGATATGGGACCAATTAATGGACAC--TTTTTTT
CTAAGAAAACATTGGTACCACCTTAGGCTAACCGT-ATGGGAGTGTCGTAGTTAGTATCATTCATGTCAACTAGGAAATT
TTGATGAGGTGGCATAGAATTAAGTGAAAGAA---AATTGAGTATCATATCATGATACCATATCATAAT-AATATTATAC
TAGTATGTGTCTTGTCTGGGAATAAATAAGATCATCTGAGATA-------------------------------------
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-------------------------CTAATCTACTCCCTCCGTTCCAAATTACTCGTCGTGGTTTTAGTTTAATTTTGAA
CTGAAACCACGACGAGTAATTTAGAATGAAGGGAGTATAATACTATGCATCAAAAAGGTAGTACCATATACTAGTATCAT
ATGCATGATTCTAACTTGTGATACTACGGAAAATACACAGGAGCTCATGGGTGCTCCACACCCCAATACGAATATTAATC
ATAAAAAATACCAAAAGAATTCAAAAAGTTCTGAAATTTGGGGATATGAAACATGGATTCTCAATCTACTCCTGTGTGAA
ATTTCGTGGAAAAATACCAGGAAACGTATCTGTGGCGAAAGAAATATTGTTCGAACAAAAATCAATCCAAACAGTTTTTT
CTACACATAGGAATTTTTGTCTTTTTGCCCGAATACCTTTTCCTGGTATTTTTTTCACAAAATTTCACACGGAAGTAGAC
GGGACCCCAGATTTGATATCCCAAAATCTCAAAAAAAAAATTCAAATTTCTCGGTATTCTTTTGAATTTAATGTTCGTAT
AGGGGTGTGGAGCACCCGGGTATTACAAATCCGCTTCCATGATACTACCCATTACAGCCAGCCTTATAGCGCATGCATCA
AG------------------------------------------------------------------------------
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-----------------AATGTAGCGGTATGCACCAAGGGATCAACCACATTAATCGATACTTTTAGATACGAAGCAATA
ATTTATTAGATAGATATATGGTGTATATGACATGAATTCAGTTATCTCCGTCTGTGTA----------TCCCAGCGCTTC
TATTTAAACGCCCCCGGTTCACATGTCAGTGATCCTCGTCTGATTTGAGCATCTGACTGATCTCAACTCTCGAGCTTCGA
AACCTCACTGATCGATCCAAGCCTAGCACACCACAATTCCACAAACCAGCAGCCATGAGGACCAGCATCACCCTCGTCAT
CGGTGTGGCCGCCATCATCTACGCCGTCGCCATGCCCGCCACGGCGATGCCCGGCGGGTGGGAACACATCCGTAACATCA
ACGACCCGAAGATCCAGGGGCTCGGCAATTGGGCGGTGGCGGAGCACATGAAGCAGGCGGGCGGCCGGTTCAGGTTCAGC
AAGGTGGTGCTGGGCACGGTGCAGGTGGTGTCGGGCTTCAACTATCGGCTCCTCGTCGAGGCGCTGAACGGCGCCGGCAA
GAAGGACGCGTACAAGGTGGAGGTGTACGAGGAGGCGGCCGACAAAGGGCGCAAGCTCGTCTCCTTCACCCCGGTCGCCC
AAGAGGCGTAGGCCTTTTGGTGTATTTGTAATTCTTGAT----GGACATCGTCACAGCTCACAAGCAATATTAATGAGGC
ATCAAAAAGTTACAGATCCAACTGCATTACCTTTGACTCACATAATCTAAATGTCACTC--GTGCGCATTCTAGAAAGAA
AAAAAAATGAGCTAAAAAATTTGAGCTAACTGGTGGAAAAAGTGGATGCCTTATACTCCCTCTGTAAACTAATATAAGAG
CGTTTAGATCACTACTTTAGTATTCTAAAAGCTCTTATATTAGTTT----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ACGGAGGGAGTACTACATTTTCAAACGG
AGGGGGTGCACCAATGTTGCCATCTCAATGTAGTAC--------------------------------------------
---------------------------------------AATTTTGAATTTCAAAGCCTGAGAGAACAGAATTGGTAAGT
TCAGTTCTCTCTACAAAAAGTCAAAGCCTTCTTTGCCACGAAAGCTTTTATGCTATCTACACCATCAGATATGAGATGGT
TTTGCGGAACAGGCATCTGGGTTCTACAGTTTTGGAGCCATCCAGTCAGTACTCACAAAGTCACAAGCTTAACTCATGCC
TCCACGAGCCCTTTGCTACGTGCTTTCTTCTTCCCGCCCTTCCCCTCCTTTGGGCTTGCTTGATCTTTCTCTTCGACTTC
GGTTTCTATTTTGGCAAAAATTGGCTTCGGCTCCATCATTGCCTGGCCTGCTTTAAGGGCTCCCCATTTGGTATCATCCT
GCAGGGCAGTTAGCACAGGGTTGTAAGCATGTCGCGCCACTGGAAATTTTTTATATTGCATATCTGCTATT
>SNPs
---------------------------------------S----------------------------------------
-----------------------------------------------------------------------SS-------
--------S---------------------------------S--S---------------S---S--------------
-------SS--S---------------------S-----------S----------------------------------
-------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
---------------------------------------S-S-----S----------------S--------------S
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--------------------------------------------S---------S-------------------------
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-------------------------------------------S-------------S-----S----------------
-----------------------------------------------------S-S--------------S-S-------
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---------------------------------------------------------------------S----------
--S-------------------------------------------------------------------S---------
--------------------------SS--------------------------------------------------S-
---------------------------------------------------S----------------------------
------------------------------------S---------S-----------S--------S------------
---------------------------------------SSSS-----------------------------SS------
-----S---------------------------------------------------S-S--------------------
----------------------S-----------------S---------------------S--SSSSS----SSSSSS
-SS-SSS-SS-SS-S-SSSSSSSSS-SSS-SSSSS-S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------S------------------------
------------------S---------------------------------------------------S---------
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----------------------------------------------------------------------------S---
------------S-------------------------------------------------------------------
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>forward_548
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------------------------------------------------GCACTTAGCCCATTGGAGGT------------
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>reverse_2203
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------------------------------------------TGGACATCGTCACAGCTCAC------------------
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