Multiple sequence alignment - TraesCS4A01G047400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G047400 chr4A 100.000 3246 0 0 1 3246 38696970 38693725 0.000000e+00 5995.0
1 TraesCS4A01G047400 chr4D 88.394 1818 127 38 850 2637 426851824 426853587 0.000000e+00 2111.0
2 TraesCS4A01G047400 chr4D 93.364 648 25 10 228 858 426850845 426851491 0.000000e+00 942.0
3 TraesCS4A01G047400 chr4D 92.529 348 21 4 2634 2977 426853727 426854073 8.090000e-136 494.0
4 TraesCS4A01G047400 chr4D 94.697 132 5 2 3014 3144 426854242 426854372 1.530000e-48 204.0
5 TraesCS4A01G047400 chr3A 91.487 975 49 12 850 1814 680732224 680731274 0.000000e+00 1310.0
6 TraesCS4A01G047400 chr3A 93.048 374 21 3 2037 2407 680728937 680728566 2.850000e-150 542.0
7 TraesCS4A01G047400 chr3A 91.234 308 12 4 2634 2938 680728249 680727954 3.900000e-109 405.0
8 TraesCS4A01G047400 chr3A 90.960 177 8 7 1781 1957 680731272 680731104 7.000000e-57 231.0
9 TraesCS4A01G047400 chr3A 82.653 196 8 10 2443 2637 680728558 680728388 2.020000e-32 150.0
10 TraesCS4A01G047400 chr4B 91.186 919 65 9 850 1764 522522616 522523522 0.000000e+00 1234.0
11 TraesCS4A01G047400 chr4B 86.921 864 46 21 1 858 522521384 522522186 0.000000e+00 907.0
12 TraesCS4A01G047400 chr4B 92.357 314 17 5 1975 2286 522532609 522532917 1.070000e-119 440.0
13 TraesCS4A01G047400 chr4B 88.125 320 25 6 2320 2637 522532916 522533224 5.120000e-98 368.0
14 TraesCS4A01G047400 chr4B 94.444 216 10 2 2763 2977 522533602 522533816 6.710000e-87 331.0
15 TraesCS4A01G047400 chr4B 91.617 167 12 2 2979 3144 522533972 522534137 2.520000e-56 230.0
16 TraesCS4A01G047400 chr3B 91.727 822 45 9 850 1662 719422045 719421238 0.000000e+00 1120.0
17 TraesCS4A01G047400 chr3B 87.602 984 71 24 1661 2637 719421080 719420141 0.000000e+00 1094.0
18 TraesCS4A01G047400 chr3B 91.014 345 17 4 2634 2977 719420017 719419686 1.370000e-123 453.0
19 TraesCS4A01G047400 chr3B 97.368 38 0 1 1778 1814 719420929 719420892 2.700000e-06 63.9
20 TraesCS4A01G047400 chr3D 91.677 793 43 11 1852 2637 543766764 543765988 0.000000e+00 1077.0
21 TraesCS4A01G047400 chr3D 93.202 559 23 9 850 1401 543767299 543766749 0.000000e+00 808.0
22 TraesCS4A01G047400 chr3D 90.419 334 12 6 2634 2958 543765848 543765526 3.870000e-114 422.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G047400 chr4A 38693725 38696970 3245 True 5995.000 5995 100.00000 1 3246 1 chr4A.!!$R1 3245
1 TraesCS4A01G047400 chr4D 426850845 426854372 3527 False 937.750 2111 92.24600 228 3144 4 chr4D.!!$F1 2916
2 TraesCS4A01G047400 chr3A 680727954 680732224 4270 True 527.600 1310 89.87640 850 2938 5 chr3A.!!$R1 2088
3 TraesCS4A01G047400 chr4B 522521384 522523522 2138 False 1070.500 1234 89.05350 1 1764 2 chr4B.!!$F1 1763
4 TraesCS4A01G047400 chr4B 522532609 522534137 1528 False 342.250 440 91.63575 1975 3144 4 chr4B.!!$F2 1169
5 TraesCS4A01G047400 chr3B 719419686 719422045 2359 True 682.725 1120 91.92775 850 2977 4 chr3B.!!$R1 2127
6 TraesCS4A01G047400 chr3D 543765526 543767299 1773 True 769.000 1077 91.76600 850 2958 3 chr3D.!!$R1 2108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 160 0.461961 CAGGGCCAAACCGTCAAAAA 59.538 50.000 6.18 0.0 40.62 1.94 F
1075 1546 0.313672 GCAACAAATGAGCCCGAACA 59.686 50.000 0.00 0.0 0.00 3.18 F
1368 1845 1.008079 GTTGGTGCTGCTGTTCTGC 60.008 57.895 0.00 0.0 39.73 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1845 0.523072 CAGCTCCAACGGTCCAAATG 59.477 55.0 0.00 0.0 0.0 2.32 R
2206 4986 0.783206 TTTCCTGGCTTGATTCCCCA 59.217 50.0 0.00 0.0 0.0 4.96 R
3157 6366 0.036875 GGCTGCCTTGTCCTAGTGTT 59.963 55.0 12.43 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 79 5.644977 AGAAAGTTAATTGGCTGCCTAAC 57.355 39.130 21.03 18.68 0.00 2.34
91 93 3.352338 CTAACGCGGGCCGAAGTCT 62.352 63.158 33.44 19.15 41.02 3.24
146 148 3.583276 CTCGTTACGCACAGGGCCA 62.583 63.158 6.18 0.00 40.31 5.36
158 160 0.461961 CAGGGCCAAACCGTCAAAAA 59.538 50.000 6.18 0.00 40.62 1.94
200 204 3.589881 CTATTGGCTGCCGCTGCC 61.590 66.667 29.14 29.14 46.46 4.85
209 213 4.802051 GCCGCTGCCATCCCTCAA 62.802 66.667 0.00 0.00 0.00 3.02
210 214 2.045045 CCGCTGCCATCCCTCAAA 60.045 61.111 0.00 0.00 0.00 2.69
211 215 1.678635 CCGCTGCCATCCCTCAAAA 60.679 57.895 0.00 0.00 0.00 2.44
212 216 1.250154 CCGCTGCCATCCCTCAAAAA 61.250 55.000 0.00 0.00 0.00 1.94
468 486 3.561725 CCTTTAAGACATCAATCCGAGCC 59.438 47.826 0.00 0.00 0.00 4.70
479 497 3.077359 CAATCCGAGCCTTCTCTTTTGT 58.923 45.455 0.00 0.00 37.19 2.83
590 614 3.799232 GCCTCACCATACCTTACATCGTC 60.799 52.174 0.00 0.00 0.00 4.20
593 617 3.123804 CACCATACCTTACATCGTCAGC 58.876 50.000 0.00 0.00 0.00 4.26
638 665 7.092716 GGCACTAATTTTATTGGCCATATGAG 58.907 38.462 6.09 0.82 34.30 2.90
675 702 7.538678 TCGAAAAATTCTTCTTCTTTGCATAGC 59.461 33.333 0.00 0.00 0.00 2.97
717 744 2.093306 TTGAATGGGTGTCTACAGCG 57.907 50.000 6.24 0.00 44.67 5.18
791 819 5.112686 CCCAAGACTCAGATTAGCTGTAAC 58.887 45.833 0.00 0.00 45.14 2.50
953 1424 3.003763 GAGGGGTGGGCGTTCTCT 61.004 66.667 0.00 0.00 0.00 3.10
997 1468 3.057806 AGCGGTATAAAGTTGTTTGGTGC 60.058 43.478 0.00 0.00 0.00 5.01
1071 1542 2.415893 CCTTTAGCAACAAATGAGCCCG 60.416 50.000 0.00 0.00 0.00 6.13
1075 1546 0.313672 GCAACAAATGAGCCCGAACA 59.686 50.000 0.00 0.00 0.00 3.18
1197 1671 1.551452 ACTACAGGTGAGCCTCAGAC 58.449 55.000 0.00 0.00 44.97 3.51
1347 1821 3.244946 GAAGGGCTTCTTCCAAAGGTACT 60.245 47.826 8.50 0.00 44.60 2.73
1368 1845 1.008079 GTTGGTGCTGCTGTTCTGC 60.008 57.895 0.00 0.00 39.73 4.26
1474 1951 2.251600 GCTCAGCCAACAGTTCAGG 58.748 57.895 0.00 0.00 0.00 3.86
1582 2064 6.115448 ACCTGTCATACTGCTAAGACTTTT 57.885 37.500 0.00 0.00 32.41 2.27
1600 2082 8.056407 AGACTTTTCTGGTATTTCTAAATGGC 57.944 34.615 0.00 0.00 0.00 4.40
1910 2593 4.101430 ACCACGGGTTGAAGTAAAAGTAGA 59.899 41.667 0.00 0.00 27.29 2.59
1911 2594 5.058490 CCACGGGTTGAAGTAAAAGTAGAA 58.942 41.667 0.00 0.00 0.00 2.10
1973 4714 3.930229 TCAAACCTATGTGCACATACGTC 59.070 43.478 31.03 0.00 37.76 4.34
1979 4726 2.232756 TGTGCACATACGTCTGTTGT 57.767 45.000 17.42 0.00 0.00 3.32
2018 4765 5.352846 GTCACTGATTCCTAAGAAAAGCCTC 59.647 44.000 0.00 0.00 35.09 4.70
2019 4766 5.249393 TCACTGATTCCTAAGAAAAGCCTCT 59.751 40.000 0.00 0.00 35.09 3.69
2050 4798 5.716228 TCCACTTAGGTTTCATGCATTCATT 59.284 36.000 0.00 0.00 39.02 2.57
2055 4834 8.462016 ACTTAGGTTTCATGCATTCATTAACTC 58.538 33.333 0.00 0.00 30.92 3.01
2086 4865 9.274065 CATAAAAGAAACGCTTATTTAGTCCAC 57.726 33.333 0.00 0.00 35.24 4.02
2206 4986 2.417558 AAAGGCAGCCGGAGAAAGCT 62.418 55.000 5.05 0.00 40.89 3.74
2267 5047 4.393062 AGAATGTTAACCGTGAATCTGCAG 59.607 41.667 7.63 7.63 0.00 4.41
2408 5195 6.482973 CCTGTAATTTTCCAAACTGCACAATT 59.517 34.615 0.00 0.00 0.00 2.32
2409 5196 7.012232 CCTGTAATTTTCCAAACTGCACAATTT 59.988 33.333 0.00 0.00 0.00 1.82
2410 5197 8.273780 TGTAATTTTCCAAACTGCACAATTTT 57.726 26.923 0.00 0.00 0.00 1.82
2437 5224 4.264253 TGAATCTGGCTATTGTTCTGTGG 58.736 43.478 0.00 0.00 0.00 4.17
2441 5228 1.004277 TGGCTATTGTTCTGTGGGGAC 59.996 52.381 0.00 0.00 0.00 4.46
2524 5312 4.266976 GCATGACTAGCACATGAATTTTGC 59.733 41.667 24.94 11.97 45.22 3.68
2543 5331 6.741992 TTTGCGAATCTTGAATGTGACTAT 57.258 33.333 0.00 0.00 0.00 2.12
2552 5340 5.637810 TCTTGAATGTGACTATCGTCCAAAC 59.362 40.000 0.00 0.00 39.47 2.93
2553 5341 5.147330 TGAATGTGACTATCGTCCAAACT 57.853 39.130 0.00 0.00 39.47 2.66
2554 5342 5.168569 TGAATGTGACTATCGTCCAAACTC 58.831 41.667 0.00 0.00 39.47 3.01
2555 5343 3.211803 TGTGACTATCGTCCAAACTCG 57.788 47.619 0.00 0.00 39.47 4.18
2556 5344 2.815503 TGTGACTATCGTCCAAACTCGA 59.184 45.455 0.00 0.00 39.47 4.04
2557 5345 3.253921 TGTGACTATCGTCCAAACTCGAA 59.746 43.478 0.00 0.00 39.47 3.71
2558 5346 4.082408 TGTGACTATCGTCCAAACTCGAAT 60.082 41.667 0.00 0.00 39.47 3.34
2679 5612 1.742308 TCCCTTTACTTGGAGCAGGT 58.258 50.000 0.00 0.00 0.00 4.00
2716 5660 1.242665 TGCATTGCAACGCTGGATGA 61.243 50.000 19.28 0.00 34.76 2.92
2759 5703 3.069586 TGGAACACAGTTCTCTGGTAGTG 59.930 47.826 9.46 0.00 45.14 2.74
2792 5841 0.179059 TCAAGCTTCAGCACGGTCAA 60.179 50.000 0.00 0.00 45.16 3.18
2818 5867 4.524802 TGGATGGAATTACCTGCTGATT 57.475 40.909 0.00 0.00 39.86 2.57
2856 5905 4.610945 ACAAAGCAAACTAACAGCACATC 58.389 39.130 0.00 0.00 0.00 3.06
2857 5906 4.097741 ACAAAGCAAACTAACAGCACATCA 59.902 37.500 0.00 0.00 0.00 3.07
2938 5988 1.876322 CTCGGCCTCTGAAATGATCC 58.124 55.000 0.00 0.00 0.00 3.36
2940 5990 1.139654 TCGGCCTCTGAAATGATCCAG 59.860 52.381 0.00 0.00 0.00 3.86
2977 6185 4.275196 TCAGATACGCGGTAGCATATATCC 59.725 45.833 12.47 0.00 45.49 2.59
2983 6191 3.551046 CGCGGTAGCATATATCCTCATCC 60.551 52.174 0.00 0.00 45.49 3.51
3005 6213 4.062293 CAACGACTGGACTTCAATTACCA 58.938 43.478 0.00 0.00 0.00 3.25
3110 6319 0.769873 ATTGATCCCAGCTGCCCTAG 59.230 55.000 8.66 0.00 0.00 3.02
3122 6331 2.565841 CTGCCCTAGGTATCAAGTTGC 58.434 52.381 8.29 0.74 0.00 4.17
3146 6355 3.875865 GGTTGTAACCCCTAGCAGG 57.124 57.895 2.28 0.00 43.43 4.85
3147 6356 1.282382 GGTTGTAACCCCTAGCAGGA 58.718 55.000 2.28 0.00 43.43 3.86
3148 6357 1.631898 GGTTGTAACCCCTAGCAGGAA 59.368 52.381 2.28 0.00 43.43 3.36
3149 6358 2.355818 GGTTGTAACCCCTAGCAGGAAG 60.356 54.545 2.28 0.00 43.43 3.46
3150 6359 2.570302 GTTGTAACCCCTAGCAGGAAGA 59.430 50.000 4.16 0.00 37.67 2.87
3151 6360 2.467880 TGTAACCCCTAGCAGGAAGAG 58.532 52.381 4.16 0.00 37.67 2.85
3152 6361 2.043939 TGTAACCCCTAGCAGGAAGAGA 59.956 50.000 4.16 0.00 37.67 3.10
3153 6362 1.872773 AACCCCTAGCAGGAAGAGAG 58.127 55.000 4.16 0.00 37.67 3.20
3154 6363 1.011595 ACCCCTAGCAGGAAGAGAGA 58.988 55.000 4.16 0.00 37.67 3.10
3155 6364 1.578215 ACCCCTAGCAGGAAGAGAGAT 59.422 52.381 4.16 0.00 37.67 2.75
3156 6365 2.022527 ACCCCTAGCAGGAAGAGAGATT 60.023 50.000 4.16 0.00 37.67 2.40
3157 6366 3.207777 ACCCCTAGCAGGAAGAGAGATTA 59.792 47.826 4.16 0.00 37.67 1.75
3158 6367 4.227197 CCCCTAGCAGGAAGAGAGATTAA 58.773 47.826 4.00 0.00 37.67 1.40
3159 6368 4.039852 CCCCTAGCAGGAAGAGAGATTAAC 59.960 50.000 4.00 0.00 37.67 2.01
3160 6369 4.651503 CCCTAGCAGGAAGAGAGATTAACA 59.348 45.833 4.00 0.00 37.67 2.41
3161 6370 5.452636 CCCTAGCAGGAAGAGAGATTAACAC 60.453 48.000 4.00 0.00 37.67 3.32
3162 6371 5.362430 CCTAGCAGGAAGAGAGATTAACACT 59.638 44.000 0.00 0.00 37.67 3.55
3163 6372 6.547880 CCTAGCAGGAAGAGAGATTAACACTA 59.452 42.308 0.00 0.00 37.67 2.74
3164 6373 6.463995 AGCAGGAAGAGAGATTAACACTAG 57.536 41.667 0.00 0.00 0.00 2.57
3165 6374 5.362430 AGCAGGAAGAGAGATTAACACTAGG 59.638 44.000 0.00 0.00 0.00 3.02
3166 6375 5.361285 GCAGGAAGAGAGATTAACACTAGGA 59.639 44.000 0.00 0.00 0.00 2.94
3167 6376 6.681865 GCAGGAAGAGAGATTAACACTAGGAC 60.682 46.154 0.00 0.00 0.00 3.85
3168 6377 6.378564 CAGGAAGAGAGATTAACACTAGGACA 59.621 42.308 0.00 0.00 0.00 4.02
3169 6378 6.954684 AGGAAGAGAGATTAACACTAGGACAA 59.045 38.462 0.00 0.00 0.00 3.18
3170 6379 7.123547 AGGAAGAGAGATTAACACTAGGACAAG 59.876 40.741 0.00 0.00 0.00 3.16
3171 6380 6.783708 AGAGAGATTAACACTAGGACAAGG 57.216 41.667 0.00 0.00 0.00 3.61
3172 6381 5.128008 AGAGAGATTAACACTAGGACAAGGC 59.872 44.000 0.00 0.00 0.00 4.35
3173 6382 4.777896 AGAGATTAACACTAGGACAAGGCA 59.222 41.667 0.00 0.00 0.00 4.75
3174 6383 5.091261 AGATTAACACTAGGACAAGGCAG 57.909 43.478 0.00 0.00 0.00 4.85
3175 6384 2.762535 TAACACTAGGACAAGGCAGC 57.237 50.000 0.00 0.00 0.00 5.25
3176 6385 0.036875 AACACTAGGACAAGGCAGCC 59.963 55.000 1.84 1.84 0.00 4.85
3177 6386 1.448540 CACTAGGACAAGGCAGCCG 60.449 63.158 5.55 0.00 0.00 5.52
3178 6387 1.609501 ACTAGGACAAGGCAGCCGA 60.610 57.895 5.55 0.00 0.00 5.54
3179 6388 0.978146 ACTAGGACAAGGCAGCCGAT 60.978 55.000 5.55 0.00 0.00 4.18
3180 6389 0.179000 CTAGGACAAGGCAGCCGATT 59.821 55.000 5.55 0.00 0.00 3.34
3181 6390 1.412710 CTAGGACAAGGCAGCCGATTA 59.587 52.381 5.55 0.00 0.00 1.75
3182 6391 0.839946 AGGACAAGGCAGCCGATTAT 59.160 50.000 5.55 0.00 0.00 1.28
3183 6392 1.212935 AGGACAAGGCAGCCGATTATT 59.787 47.619 5.55 0.00 0.00 1.40
3184 6393 2.024414 GGACAAGGCAGCCGATTATTT 58.976 47.619 5.55 0.00 0.00 1.40
3185 6394 2.223572 GGACAAGGCAGCCGATTATTTG 60.224 50.000 5.55 6.54 0.00 2.32
3186 6395 1.750778 ACAAGGCAGCCGATTATTTGG 59.249 47.619 5.55 0.00 0.00 3.28
3187 6396 1.067516 CAAGGCAGCCGATTATTTGGG 59.932 52.381 5.55 0.00 0.00 4.12
3188 6397 0.258774 AGGCAGCCGATTATTTGGGT 59.741 50.000 5.55 0.00 37.63 4.51
3189 6398 1.111277 GGCAGCCGATTATTTGGGTT 58.889 50.000 0.00 0.00 34.75 4.11
3190 6399 2.092103 AGGCAGCCGATTATTTGGGTTA 60.092 45.455 5.55 0.00 34.75 2.85
3191 6400 2.034179 GGCAGCCGATTATTTGGGTTAC 59.966 50.000 0.00 0.00 34.75 2.50
3192 6401 2.685897 GCAGCCGATTATTTGGGTTACA 59.314 45.455 0.00 0.00 34.75 2.41
3193 6402 3.317993 GCAGCCGATTATTTGGGTTACAT 59.682 43.478 0.00 0.00 34.75 2.29
3194 6403 4.792704 GCAGCCGATTATTTGGGTTACATG 60.793 45.833 0.00 0.00 34.75 3.21
3195 6404 4.338118 CAGCCGATTATTTGGGTTACATGT 59.662 41.667 2.69 2.69 34.75 3.21
3196 6405 4.578928 AGCCGATTATTTGGGTTACATGTC 59.421 41.667 0.00 0.00 32.99 3.06
3197 6406 4.336993 GCCGATTATTTGGGTTACATGTCA 59.663 41.667 0.00 0.00 0.00 3.58
3198 6407 5.505654 GCCGATTATTTGGGTTACATGTCAG 60.506 44.000 0.00 0.00 0.00 3.51
3199 6408 5.008613 CCGATTATTTGGGTTACATGTCAGG 59.991 44.000 0.00 0.00 0.00 3.86
3200 6409 5.588648 CGATTATTTGGGTTACATGTCAGGT 59.411 40.000 0.00 0.00 0.00 4.00
3201 6410 6.094881 CGATTATTTGGGTTACATGTCAGGTT 59.905 38.462 0.00 0.00 0.00 3.50
3202 6411 6.582677 TTATTTGGGTTACATGTCAGGTTG 57.417 37.500 0.00 0.00 0.00 3.77
3203 6412 3.586470 TTGGGTTACATGTCAGGTTGT 57.414 42.857 0.00 0.00 0.00 3.32
3204 6413 4.708576 TTGGGTTACATGTCAGGTTGTA 57.291 40.909 0.00 0.00 0.00 2.41
3205 6414 4.708576 TGGGTTACATGTCAGGTTGTAA 57.291 40.909 0.00 0.00 36.30 2.41
3217 6426 2.005971 GGTTGTAACCGACTAGCAGG 57.994 55.000 0.00 2.80 39.66 4.85
3218 6427 1.547372 GGTTGTAACCGACTAGCAGGA 59.453 52.381 10.67 0.00 39.66 3.86
3219 6428 2.028748 GGTTGTAACCGACTAGCAGGAA 60.029 50.000 10.67 0.00 39.66 3.36
3220 6429 3.251571 GTTGTAACCGACTAGCAGGAAG 58.748 50.000 10.67 0.00 0.00 3.46
3221 6430 2.799017 TGTAACCGACTAGCAGGAAGA 58.201 47.619 10.67 0.00 0.00 2.87
3222 6431 2.753452 TGTAACCGACTAGCAGGAAGAG 59.247 50.000 10.67 0.00 0.00 2.85
3223 6432 2.217510 AACCGACTAGCAGGAAGAGA 57.782 50.000 10.67 0.00 0.00 3.10
3224 6433 1.757682 ACCGACTAGCAGGAAGAGAG 58.242 55.000 10.67 0.00 0.00 3.20
3225 6434 1.282447 ACCGACTAGCAGGAAGAGAGA 59.718 52.381 10.67 0.00 0.00 3.10
3226 6435 2.092103 ACCGACTAGCAGGAAGAGAGAT 60.092 50.000 10.67 0.00 0.00 2.75
3227 6436 2.955660 CCGACTAGCAGGAAGAGAGATT 59.044 50.000 0.00 0.00 0.00 2.40
3228 6437 4.138290 CCGACTAGCAGGAAGAGAGATTA 58.862 47.826 0.00 0.00 0.00 1.75
3229 6438 4.580995 CCGACTAGCAGGAAGAGAGATTAA 59.419 45.833 0.00 0.00 0.00 1.40
3230 6439 5.506649 CCGACTAGCAGGAAGAGAGATTAAC 60.507 48.000 0.00 0.00 0.00 2.01
3231 6440 5.066634 CGACTAGCAGGAAGAGAGATTAACA 59.933 44.000 0.00 0.00 0.00 2.41
3232 6441 6.215495 ACTAGCAGGAAGAGAGATTAACAC 57.785 41.667 0.00 0.00 0.00 3.32
3233 6442 5.955355 ACTAGCAGGAAGAGAGATTAACACT 59.045 40.000 0.00 0.00 0.00 3.55
3234 6443 7.120051 ACTAGCAGGAAGAGAGATTAACACTA 58.880 38.462 0.00 0.00 0.00 2.74
3235 6444 6.463995 AGCAGGAAGAGAGATTAACACTAG 57.536 41.667 0.00 0.00 0.00 2.57
3236 6445 5.362430 AGCAGGAAGAGAGATTAACACTAGG 59.638 44.000 0.00 0.00 0.00 3.02
3237 6446 5.452636 GCAGGAAGAGAGATTAACACTAGGG 60.453 48.000 0.00 0.00 0.00 3.53
3238 6447 4.651962 AGGAAGAGAGATTAACACTAGGGC 59.348 45.833 0.00 0.00 0.00 5.19
3239 6448 4.406003 GGAAGAGAGATTAACACTAGGGCA 59.594 45.833 0.00 0.00 0.00 5.36
3240 6449 5.104900 GGAAGAGAGATTAACACTAGGGCAA 60.105 44.000 0.00 0.00 0.00 4.52
3241 6450 5.606348 AGAGAGATTAACACTAGGGCAAG 57.394 43.478 0.00 0.00 0.00 4.01
3242 6451 5.026790 AGAGAGATTAACACTAGGGCAAGT 58.973 41.667 0.00 0.00 0.00 3.16
3243 6452 5.128008 AGAGAGATTAACACTAGGGCAAGTC 59.872 44.000 0.00 0.00 0.00 3.01
3244 6453 4.777896 AGAGATTAACACTAGGGCAAGTCA 59.222 41.667 0.00 0.00 0.00 3.41
3245 6454 4.833390 AGATTAACACTAGGGCAAGTCAC 58.167 43.478 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 8.783093 GGCAGCCAATTAACTTTCTTTTTATTT 58.217 29.630 6.55 0.00 0.00 1.40
48 50 8.156820 AGGCAGCCAATTAACTTTCTTTTTATT 58.843 29.630 15.80 0.00 0.00 1.40
91 93 3.667087 GCAACCGGCAATGAGTCA 58.333 55.556 0.00 0.00 43.97 3.41
124 126 3.179265 CTGTGCGTAACGAGGCCG 61.179 66.667 0.00 0.00 42.50 6.13
125 127 2.813908 CCTGTGCGTAACGAGGCC 60.814 66.667 0.00 0.00 35.53 5.19
126 128 2.813908 CCCTGTGCGTAACGAGGC 60.814 66.667 0.00 0.00 36.97 4.70
127 129 2.813908 GCCCTGTGCGTAACGAGG 60.814 66.667 0.00 0.00 0.00 4.63
128 130 2.813908 GGCCCTGTGCGTAACGAG 60.814 66.667 0.00 0.00 42.61 4.18
158 160 2.743838 CGTACCGACCTATTGGCCATTT 60.744 50.000 6.09 0.00 36.63 2.32
161 163 1.678598 CCGTACCGACCTATTGGCCA 61.679 60.000 0.00 0.00 36.63 5.36
162 164 1.068585 CCGTACCGACCTATTGGCC 59.931 63.158 0.00 0.00 36.63 5.36
163 165 0.529119 CACCGTACCGACCTATTGGC 60.529 60.000 0.00 0.00 36.63 4.52
164 166 0.529119 GCACCGTACCGACCTATTGG 60.529 60.000 0.00 0.00 39.83 3.16
165 167 0.458669 AGCACCGTACCGACCTATTG 59.541 55.000 0.00 0.00 0.00 1.90
169 173 0.458669 CAATAGCACCGTACCGACCT 59.541 55.000 0.00 0.00 0.00 3.85
213 217 2.427095 AGCGGCAGTTGTTCTTCTTTTT 59.573 40.909 1.45 0.00 0.00 1.94
214 218 2.024414 AGCGGCAGTTGTTCTTCTTTT 58.976 42.857 1.45 0.00 0.00 2.27
215 219 1.334869 CAGCGGCAGTTGTTCTTCTTT 59.665 47.619 1.45 0.00 0.00 2.52
216 220 0.947244 CAGCGGCAGTTGTTCTTCTT 59.053 50.000 1.45 0.00 0.00 2.52
217 221 1.510480 GCAGCGGCAGTTGTTCTTCT 61.510 55.000 3.18 0.00 40.72 2.85
218 222 1.081840 GCAGCGGCAGTTGTTCTTC 60.082 57.895 3.18 0.00 40.72 2.87
219 223 2.555547 GGCAGCGGCAGTTGTTCTT 61.556 57.895 11.88 0.00 43.71 2.52
220 224 2.980233 GGCAGCGGCAGTTGTTCT 60.980 61.111 11.88 0.00 43.71 3.01
221 225 4.389576 CGGCAGCGGCAGTTGTTC 62.390 66.667 11.88 0.00 43.71 3.18
360 378 1.315981 CCTCGCTGCTAGTCCACTCA 61.316 60.000 0.00 0.00 0.00 3.41
468 486 6.199719 GGCACTGAAATTGAACAAAAGAGAAG 59.800 38.462 0.00 0.00 0.00 2.85
479 497 3.450457 ACAAACCTGGCACTGAAATTGAA 59.550 39.130 0.00 0.00 0.00 2.69
590 614 6.582295 GCCGTATTTATAATTTCACATGGCTG 59.418 38.462 0.00 0.00 33.62 4.85
593 617 7.648142 AGTGCCGTATTTATAATTTCACATGG 58.352 34.615 0.00 0.00 0.00 3.66
638 665 6.803807 AGAAGAATTTTTCGATTAGCAAGTGC 59.196 34.615 3.29 0.00 36.57 4.40
656 683 5.655532 ACATGGCTATGCAAAGAAGAAGAAT 59.344 36.000 10.37 0.00 37.85 2.40
660 687 5.726980 AAACATGGCTATGCAAAGAAGAA 57.273 34.783 10.37 0.00 37.85 2.52
675 702 3.700538 TGGGATTCAGGAGAAAACATGG 58.299 45.455 0.00 0.00 37.29 3.66
791 819 8.755018 GTGAATGAAAAAGGATATAATTTGCCG 58.245 33.333 0.00 0.00 0.00 5.69
881 1348 7.862372 TGCAAATTATTCGGCTGATTAGAAATC 59.138 33.333 0.00 0.00 0.00 2.17
883 1350 7.094508 TGCAAATTATTCGGCTGATTAGAAA 57.905 32.000 0.00 0.00 0.00 2.52
978 1449 7.033185 CCATTAGCACCAAACAACTTTATACC 58.967 38.462 0.00 0.00 0.00 2.73
1156 1630 6.186957 AGTTTATGCAACTCATGGGACATTA 58.813 36.000 0.00 0.00 42.62 1.90
1231 1705 9.474313 AGCAATTGATTACTAAAGAAATACCCA 57.526 29.630 10.34 0.00 0.00 4.51
1347 1821 1.134753 CAGAACAGCAGCACCAACAAA 59.865 47.619 0.00 0.00 0.00 2.83
1368 1845 0.523072 CAGCTCCAACGGTCCAAATG 59.477 55.000 0.00 0.00 0.00 2.32
1535 2017 9.725019 GGTCATTTCCTCCTAAAAATCAAATTT 57.275 29.630 0.00 0.00 0.00 1.82
1543 2025 5.947663 TGACAGGTCATTTCCTCCTAAAAA 58.052 37.500 0.00 0.00 35.37 1.94
1558 2040 4.993029 AGTCTTAGCAGTATGACAGGTC 57.007 45.455 0.00 0.00 39.69 3.85
1582 2064 4.953579 GGGTTGCCATTTAGAAATACCAGA 59.046 41.667 6.88 0.00 29.07 3.86
1600 2082 8.311836 TCAGTATAGAGAAACAAGTAAGGGTTG 58.688 37.037 0.00 0.00 0.00 3.77
1719 2364 7.658261 TCCTCAGTTATATCACCTAATGTTCG 58.342 38.462 0.00 0.00 0.00 3.95
1816 2490 4.525912 AAGAGGTGAATGCCAAATTGTC 57.474 40.909 0.00 0.00 0.00 3.18
1886 2569 2.946990 ACTTTTACTTCAACCCGTGGTG 59.053 45.455 0.00 0.00 35.34 4.17
1994 4741 5.249420 AGGCTTTTCTTAGGAATCAGTGAC 58.751 41.667 0.00 0.00 0.00 3.67
2018 4765 6.092807 GCATGAAACCTAAGTGGAGAAAGTAG 59.907 42.308 0.00 0.00 39.71 2.57
2019 4766 5.938125 GCATGAAACCTAAGTGGAGAAAGTA 59.062 40.000 0.00 0.00 39.71 2.24
2050 4798 4.155280 GCGTTTCTTTTATGGCCTGAGTTA 59.845 41.667 3.32 0.00 0.00 2.24
2055 4834 3.575965 AAGCGTTTCTTTTATGGCCTG 57.424 42.857 3.32 0.00 0.00 4.85
2086 4865 6.202226 GTTTCAAGTGCCTAAGACAGAAAAG 58.798 40.000 0.00 0.00 0.00 2.27
2206 4986 0.783206 TTTCCTGGCTTGATTCCCCA 59.217 50.000 0.00 0.00 0.00 4.96
2267 5047 6.179756 TGCATCCCCATGTAACATCATATAC 58.820 40.000 0.00 0.00 31.86 1.47
2311 5091 5.398353 CCATTGGAGTGGATACCAAAGATCT 60.398 44.000 0.00 0.00 46.87 2.75
2341 5122 8.506168 ACTGAGACAAAAATTTCACTACAGAA 57.494 30.769 13.81 0.00 0.00 3.02
2342 5123 8.506168 AACTGAGACAAAAATTTCACTACAGA 57.494 30.769 13.81 0.00 0.00 3.41
2409 5196 9.851686 ACAGAACAATAGCCAGATTCAATATAA 57.148 29.630 0.00 0.00 0.00 0.98
2410 5197 9.276590 CACAGAACAATAGCCAGATTCAATATA 57.723 33.333 0.00 0.00 0.00 0.86
2413 5200 5.359009 CCACAGAACAATAGCCAGATTCAAT 59.641 40.000 0.00 0.00 0.00 2.57
2437 5224 2.488153 CGAAACCCATCTCAAAAGTCCC 59.512 50.000 0.00 0.00 0.00 4.46
2441 5228 2.162408 GGCTCGAAACCCATCTCAAAAG 59.838 50.000 0.00 0.00 0.00 2.27
2493 5281 1.152902 GCTAGTCATGCATGCCCCA 60.153 57.895 22.25 1.24 0.00 4.96
2497 5285 1.944709 TCATGTGCTAGTCATGCATGC 59.055 47.619 22.25 11.82 42.69 4.06
2543 5331 3.243602 TGACAAGATTCGAGTTTGGACGA 60.244 43.478 9.46 0.00 36.75 4.20
2552 5340 3.857549 TCCTCACTGACAAGATTCGAG 57.142 47.619 0.00 0.00 0.00 4.04
2553 5341 4.498241 CATTCCTCACTGACAAGATTCGA 58.502 43.478 0.00 0.00 0.00 3.71
2554 5342 3.620374 CCATTCCTCACTGACAAGATTCG 59.380 47.826 0.00 0.00 0.00 3.34
2555 5343 3.944015 CCCATTCCTCACTGACAAGATTC 59.056 47.826 0.00 0.00 0.00 2.52
2556 5344 3.875369 GCCCATTCCTCACTGACAAGATT 60.875 47.826 0.00 0.00 0.00 2.40
2557 5345 2.356535 GCCCATTCCTCACTGACAAGAT 60.357 50.000 0.00 0.00 0.00 2.40
2558 5346 1.003580 GCCCATTCCTCACTGACAAGA 59.996 52.381 0.00 0.00 0.00 3.02
2679 5612 3.606687 TGCAGTAGTCAGTATCGTCTCA 58.393 45.455 0.00 0.00 0.00 3.27
2716 5660 4.335416 CACTACCCAATGGACACTGAATT 58.665 43.478 0.00 0.00 34.81 2.17
2759 5703 6.636044 GCTGAAGCTTGAAAGATTATGCATAC 59.364 38.462 2.10 0.00 34.31 2.39
2792 5841 5.073554 TCAGCAGGTAATTCCATCCATACAT 59.926 40.000 0.00 0.00 39.02 2.29
2818 5867 4.761227 TGCTTTGTCAGAATGCTAACATGA 59.239 37.500 0.00 0.00 36.36 3.07
2856 5905 5.687730 CCTGTGATTGTAGCTACGATAACTG 59.312 44.000 30.14 28.64 34.01 3.16
2857 5906 5.360144 ACCTGTGATTGTAGCTACGATAACT 59.640 40.000 30.14 15.76 34.01 2.24
2938 5988 3.339253 TCTGACATGGATCAACACCTG 57.661 47.619 0.00 0.00 0.00 4.00
2940 5990 3.804325 CGTATCTGACATGGATCAACACC 59.196 47.826 0.00 0.00 0.00 4.16
2983 6191 4.062293 TGGTAATTGAAGTCCAGTCGTTG 58.938 43.478 0.00 0.00 0.00 4.10
3005 6213 5.770162 ACAGAGCAGTAAAAAGCACCTAAAT 59.230 36.000 0.00 0.00 0.00 1.40
3012 6220 5.215252 ACTAGACAGAGCAGTAAAAAGCA 57.785 39.130 0.00 0.00 0.00 3.91
3013 6221 6.869388 AGTAACTAGACAGAGCAGTAAAAAGC 59.131 38.462 0.00 0.00 0.00 3.51
3024 6232 9.777575 GAGCTAAAGTAAAGTAACTAGACAGAG 57.222 37.037 0.00 0.00 0.00 3.35
3054 6263 7.642669 CCATTACAGTCCAAATAGCAGTAATG 58.357 38.462 12.83 12.83 43.10 1.90
3110 6319 2.365582 ACCCGATTGCAACTTGATACC 58.634 47.619 0.00 0.00 0.00 2.73
3139 6348 6.463995 AGTGTTAATCTCTCTTCCTGCTAG 57.536 41.667 0.00 0.00 0.00 3.42
3140 6349 6.547880 CCTAGTGTTAATCTCTCTTCCTGCTA 59.452 42.308 0.00 0.00 0.00 3.49
3141 6350 5.362430 CCTAGTGTTAATCTCTCTTCCTGCT 59.638 44.000 0.00 0.00 0.00 4.24
3142 6351 5.361285 TCCTAGTGTTAATCTCTCTTCCTGC 59.639 44.000 0.00 0.00 0.00 4.85
3143 6352 6.378564 TGTCCTAGTGTTAATCTCTCTTCCTG 59.621 42.308 0.00 0.00 0.00 3.86
3144 6353 6.494952 TGTCCTAGTGTTAATCTCTCTTCCT 58.505 40.000 0.00 0.00 0.00 3.36
3145 6354 6.777213 TGTCCTAGTGTTAATCTCTCTTCC 57.223 41.667 0.00 0.00 0.00 3.46
3146 6355 7.262048 CCTTGTCCTAGTGTTAATCTCTCTTC 58.738 42.308 0.00 0.00 0.00 2.87
3147 6356 6.351456 GCCTTGTCCTAGTGTTAATCTCTCTT 60.351 42.308 0.00 0.00 0.00 2.85
3148 6357 5.128008 GCCTTGTCCTAGTGTTAATCTCTCT 59.872 44.000 0.00 0.00 0.00 3.10
3149 6358 5.105310 TGCCTTGTCCTAGTGTTAATCTCTC 60.105 44.000 0.00 0.00 0.00 3.20
3150 6359 4.777896 TGCCTTGTCCTAGTGTTAATCTCT 59.222 41.667 0.00 0.00 0.00 3.10
3151 6360 5.086104 TGCCTTGTCCTAGTGTTAATCTC 57.914 43.478 0.00 0.00 0.00 2.75
3152 6361 4.624125 GCTGCCTTGTCCTAGTGTTAATCT 60.624 45.833 0.00 0.00 0.00 2.40
3153 6362 3.623510 GCTGCCTTGTCCTAGTGTTAATC 59.376 47.826 0.00 0.00 0.00 1.75
3154 6363 3.610911 GCTGCCTTGTCCTAGTGTTAAT 58.389 45.455 0.00 0.00 0.00 1.40
3155 6364 2.290071 GGCTGCCTTGTCCTAGTGTTAA 60.290 50.000 12.43 0.00 0.00 2.01
3156 6365 1.278127 GGCTGCCTTGTCCTAGTGTTA 59.722 52.381 12.43 0.00 0.00 2.41
3157 6366 0.036875 GGCTGCCTTGTCCTAGTGTT 59.963 55.000 12.43 0.00 0.00 3.32
3158 6367 1.679898 GGCTGCCTTGTCCTAGTGT 59.320 57.895 12.43 0.00 0.00 3.55
3159 6368 1.448540 CGGCTGCCTTGTCCTAGTG 60.449 63.158 17.92 0.00 0.00 2.74
3160 6369 0.978146 ATCGGCTGCCTTGTCCTAGT 60.978 55.000 17.92 0.00 0.00 2.57
3161 6370 0.179000 AATCGGCTGCCTTGTCCTAG 59.821 55.000 17.92 0.00 0.00 3.02
3162 6371 1.491668 TAATCGGCTGCCTTGTCCTA 58.508 50.000 17.92 0.00 0.00 2.94
3163 6372 0.839946 ATAATCGGCTGCCTTGTCCT 59.160 50.000 17.92 0.00 0.00 3.85
3164 6373 1.680338 AATAATCGGCTGCCTTGTCC 58.320 50.000 17.92 0.00 0.00 4.02
3165 6374 2.223572 CCAAATAATCGGCTGCCTTGTC 60.224 50.000 17.92 0.00 0.00 3.18
3166 6375 1.750778 CCAAATAATCGGCTGCCTTGT 59.249 47.619 17.92 0.23 0.00 3.16
3167 6376 1.067516 CCCAAATAATCGGCTGCCTTG 59.932 52.381 17.92 12.60 0.00 3.61
3168 6377 1.341976 ACCCAAATAATCGGCTGCCTT 60.342 47.619 17.92 7.78 0.00 4.35
3169 6378 0.258774 ACCCAAATAATCGGCTGCCT 59.741 50.000 17.92 0.00 0.00 4.75
3170 6379 1.111277 AACCCAAATAATCGGCTGCC 58.889 50.000 9.11 9.11 0.00 4.85
3171 6380 2.685897 TGTAACCCAAATAATCGGCTGC 59.314 45.455 0.00 0.00 0.00 5.25
3172 6381 4.338118 ACATGTAACCCAAATAATCGGCTG 59.662 41.667 0.00 0.00 0.00 4.85
3173 6382 4.532834 ACATGTAACCCAAATAATCGGCT 58.467 39.130 0.00 0.00 0.00 5.52
3174 6383 4.336993 TGACATGTAACCCAAATAATCGGC 59.663 41.667 0.00 0.00 0.00 5.54
3175 6384 5.008613 CCTGACATGTAACCCAAATAATCGG 59.991 44.000 0.00 0.00 0.00 4.18
3176 6385 5.588648 ACCTGACATGTAACCCAAATAATCG 59.411 40.000 0.00 0.00 0.00 3.34
3177 6386 7.093945 ACAACCTGACATGTAACCCAAATAATC 60.094 37.037 0.00 0.00 0.00 1.75
3178 6387 6.723977 ACAACCTGACATGTAACCCAAATAAT 59.276 34.615 0.00 0.00 0.00 1.28
3179 6388 6.071984 ACAACCTGACATGTAACCCAAATAA 58.928 36.000 0.00 0.00 0.00 1.40
3180 6389 5.636123 ACAACCTGACATGTAACCCAAATA 58.364 37.500 0.00 0.00 0.00 1.40
3181 6390 4.479158 ACAACCTGACATGTAACCCAAAT 58.521 39.130 0.00 0.00 0.00 2.32
3182 6391 3.904717 ACAACCTGACATGTAACCCAAA 58.095 40.909 0.00 0.00 0.00 3.28
3183 6392 3.586470 ACAACCTGACATGTAACCCAA 57.414 42.857 0.00 0.00 0.00 4.12
3184 6393 4.708576 TTACAACCTGACATGTAACCCA 57.291 40.909 0.00 0.00 37.16 4.51
3198 6407 1.547372 TCCTGCTAGTCGGTTACAACC 59.453 52.381 0.73 0.73 45.76 3.77
3199 6408 3.057033 TCTTCCTGCTAGTCGGTTACAAC 60.057 47.826 0.00 0.00 0.00 3.32
3200 6409 3.159472 TCTTCCTGCTAGTCGGTTACAA 58.841 45.455 0.00 0.00 0.00 2.41
3201 6410 2.753452 CTCTTCCTGCTAGTCGGTTACA 59.247 50.000 0.00 0.00 0.00 2.41
3202 6411 3.015327 TCTCTTCCTGCTAGTCGGTTAC 58.985 50.000 0.00 0.00 0.00 2.50
3203 6412 3.054582 TCTCTCTTCCTGCTAGTCGGTTA 60.055 47.826 0.00 0.00 0.00 2.85
3204 6413 2.096248 CTCTCTTCCTGCTAGTCGGTT 58.904 52.381 0.00 0.00 0.00 4.44
3205 6414 1.282447 TCTCTCTTCCTGCTAGTCGGT 59.718 52.381 0.00 0.00 0.00 4.69
3206 6415 2.045561 TCTCTCTTCCTGCTAGTCGG 57.954 55.000 0.00 0.00 0.00 4.79
3207 6416 5.066634 TGTTAATCTCTCTTCCTGCTAGTCG 59.933 44.000 0.00 0.00 0.00 4.18
3208 6417 6.096282 AGTGTTAATCTCTCTTCCTGCTAGTC 59.904 42.308 0.00 0.00 0.00 2.59
3209 6418 5.955355 AGTGTTAATCTCTCTTCCTGCTAGT 59.045 40.000 0.00 0.00 0.00 2.57
3210 6419 6.463995 AGTGTTAATCTCTCTTCCTGCTAG 57.536 41.667 0.00 0.00 0.00 3.42
3211 6420 6.547880 CCTAGTGTTAATCTCTCTTCCTGCTA 59.452 42.308 0.00 0.00 0.00 3.49
3212 6421 5.362430 CCTAGTGTTAATCTCTCTTCCTGCT 59.638 44.000 0.00 0.00 0.00 4.24
3213 6422 5.452636 CCCTAGTGTTAATCTCTCTTCCTGC 60.453 48.000 0.00 0.00 0.00 4.85
3214 6423 5.452636 GCCCTAGTGTTAATCTCTCTTCCTG 60.453 48.000 0.00 0.00 0.00 3.86
3215 6424 4.651962 GCCCTAGTGTTAATCTCTCTTCCT 59.348 45.833 0.00 0.00 0.00 3.36
3216 6425 4.406003 TGCCCTAGTGTTAATCTCTCTTCC 59.594 45.833 0.00 0.00 0.00 3.46
3217 6426 5.599999 TGCCCTAGTGTTAATCTCTCTTC 57.400 43.478 0.00 0.00 0.00 2.87
3218 6427 5.485708 ACTTGCCCTAGTGTTAATCTCTCTT 59.514 40.000 0.00 0.00 0.00 2.85
3219 6428 5.026790 ACTTGCCCTAGTGTTAATCTCTCT 58.973 41.667 0.00 0.00 0.00 3.10
3220 6429 5.105310 TGACTTGCCCTAGTGTTAATCTCTC 60.105 44.000 0.00 0.00 0.00 3.20
3221 6430 4.777896 TGACTTGCCCTAGTGTTAATCTCT 59.222 41.667 0.00 0.00 0.00 3.10
3222 6431 4.870991 GTGACTTGCCCTAGTGTTAATCTC 59.129 45.833 0.00 0.00 0.00 2.75
3223 6432 4.833390 GTGACTTGCCCTAGTGTTAATCT 58.167 43.478 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.