Multiple sequence alignment - TraesCS4A01G038400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G038400 chr4A 100.000 3212 0 0 1 3212 30401445 30398234 0.000000e+00 5932.0
1 TraesCS4A01G038400 chr4A 89.305 187 14 3 2775 2960 67534071 67534252 2.490000e-56 230.0
2 TraesCS4A01G038400 chr4A 89.617 183 13 3 2775 2956 432429018 432429195 8.960000e-56 228.0
3 TraesCS4A01G038400 chr4D 87.828 1372 66 39 153 1466 437682909 437684237 0.000000e+00 1515.0
4 TraesCS4A01G038400 chr4D 91.753 485 27 8 1900 2379 437684846 437685322 0.000000e+00 662.0
5 TraesCS4A01G038400 chr4D 94.156 308 18 0 2905 3212 437685938 437686245 1.350000e-128 470.0
6 TraesCS4A01G038400 chr4D 94.783 230 11 1 1686 1914 437684596 437684825 1.100000e-94 357.0
7 TraesCS4A01G038400 chr4D 93.220 59 4 0 2554 2612 437685709 437685767 1.590000e-13 87.9
8 TraesCS4A01G038400 chr4B 89.739 1072 61 28 427 1466 540313901 540314955 0.000000e+00 1325.0
9 TraesCS4A01G038400 chr4B 88.330 497 37 12 1900 2386 540318251 540318736 7.730000e-161 577.0
10 TraesCS4A01G038400 chr4B 88.403 457 42 6 2758 3212 540319389 540319836 1.010000e-149 540.0
11 TraesCS4A01G038400 chr4B 85.135 370 32 18 1500 1860 540315065 540315420 1.100000e-94 357.0
12 TraesCS4A01G038400 chr4B 88.276 290 26 5 113 395 540313561 540313849 1.100000e-89 340.0
13 TraesCS4A01G038400 chr6D 89.840 187 13 3 2775 2960 108500445 108500264 5.360000e-58 235.0
14 TraesCS4A01G038400 chr6D 90.123 81 8 0 32 112 383743493 383743573 4.380000e-19 106.0
15 TraesCS4A01G038400 chr6A 89.840 187 13 3 2775 2960 338457094 338457275 5.360000e-58 235.0
16 TraesCS4A01G038400 chrUn 89.305 187 14 3 2775 2960 391022246 391022427 2.490000e-56 230.0
17 TraesCS4A01G038400 chrUn 88.770 187 15 3 2775 2960 182455543 182455362 1.160000e-54 224.0
18 TraesCS4A01G038400 chrUn 88.770 187 15 3 2775 2960 231550947 231551128 1.160000e-54 224.0
19 TraesCS4A01G038400 chr1A 89.305 187 14 3 2775 2960 68927826 68927645 2.490000e-56 230.0
20 TraesCS4A01G038400 chr3B 87.719 114 11 3 2 113 107966177 107966289 2.600000e-26 130.0
21 TraesCS4A01G038400 chr2B 96.970 33 0 1 57 89 547922746 547922777 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G038400 chr4A 30398234 30401445 3211 True 5932.00 5932 100.0000 1 3212 1 chr4A.!!$R1 3211
1 TraesCS4A01G038400 chr4D 437682909 437686245 3336 False 618.38 1515 92.3480 153 3212 5 chr4D.!!$F1 3059
2 TraesCS4A01G038400 chr4B 540313561 540319836 6275 False 627.80 1325 87.9766 113 3212 5 chr4B.!!$F1 3099

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.033405 AGCCGACTAAGACCTAGCCA 60.033 55.0 0.0 0.0 0.00 4.75 F
107 108 0.102663 GCCGACTAAGACCTAGCCAC 59.897 60.0 0.0 0.0 0.00 5.01 F
1534 1727 0.029167 TGTGCGTGTGTGAATTGCAG 59.971 50.0 0.0 0.0 36.03 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1702 0.029167 CTGCAATTCACACACGCACA 59.971 50.0 0.00 0.0 0.00 4.57 R
1963 5111 0.386476 ACGGCAACAACGTCAGTAGA 59.614 50.0 0.00 0.0 41.25 2.59 R
2671 6290 0.036732 TGGCCTCTGAAAATGAGCGT 59.963 50.0 3.32 0.0 0.00 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.753897 GTGAGATTCGTGCAAATTTTCTTT 57.246 33.333 0.00 0.00 0.00 2.52
24 25 7.165427 GTGAGATTCGTGCAAATTTTCTTTT 57.835 32.000 0.00 0.00 0.00 2.27
25 26 7.276495 GTGAGATTCGTGCAAATTTTCTTTTC 58.724 34.615 0.00 0.00 0.00 2.29
26 27 6.977502 TGAGATTCGTGCAAATTTTCTTTTCA 59.022 30.769 0.00 0.00 0.00 2.69
27 28 7.167968 TGAGATTCGTGCAAATTTTCTTTTCAG 59.832 33.333 0.00 0.00 0.00 3.02
28 29 6.980397 AGATTCGTGCAAATTTTCTTTTCAGT 59.020 30.769 0.00 0.00 0.00 3.41
29 30 6.959671 TTCGTGCAAATTTTCTTTTCAGTT 57.040 29.167 0.00 0.00 0.00 3.16
30 31 6.959671 TCGTGCAAATTTTCTTTTCAGTTT 57.040 29.167 0.00 0.00 0.00 2.66
31 32 7.357951 TCGTGCAAATTTTCTTTTCAGTTTT 57.642 28.000 0.00 0.00 0.00 2.43
32 33 7.801752 TCGTGCAAATTTTCTTTTCAGTTTTT 58.198 26.923 0.00 0.00 0.00 1.94
65 66 9.734620 TTTTTCTCTTGAATGTTATGTCACTTG 57.265 29.630 0.00 0.00 31.56 3.16
66 67 8.675705 TTTCTCTTGAATGTTATGTCACTTGA 57.324 30.769 0.00 0.00 31.56 3.02
67 68 7.658179 TCTCTTGAATGTTATGTCACTTGAC 57.342 36.000 2.19 2.19 44.97 3.18
68 69 7.445121 TCTCTTGAATGTTATGTCACTTGACT 58.555 34.615 10.63 0.00 44.99 3.41
69 70 7.386025 TCTCTTGAATGTTATGTCACTTGACTG 59.614 37.037 10.63 0.00 44.99 3.51
70 71 7.216494 TCTTGAATGTTATGTCACTTGACTGA 58.784 34.615 10.63 0.00 44.99 3.41
71 72 7.386025 TCTTGAATGTTATGTCACTTGACTGAG 59.614 37.037 10.63 0.00 44.99 3.35
72 73 6.758254 TGAATGTTATGTCACTTGACTGAGA 58.242 36.000 10.63 0.00 44.99 3.27
73 74 6.646653 TGAATGTTATGTCACTTGACTGAGAC 59.353 38.462 10.63 5.26 44.99 3.36
74 75 5.791336 TGTTATGTCACTTGACTGAGACT 57.209 39.130 10.63 0.00 44.99 3.24
75 76 6.161855 TGTTATGTCACTTGACTGAGACTT 57.838 37.500 10.63 0.00 44.99 3.01
76 77 6.582636 TGTTATGTCACTTGACTGAGACTTT 58.417 36.000 10.63 0.00 44.99 2.66
77 78 6.479990 TGTTATGTCACTTGACTGAGACTTTG 59.520 38.462 10.63 0.00 44.99 2.77
78 79 3.198068 TGTCACTTGACTGAGACTTTGC 58.802 45.455 10.63 0.00 44.99 3.68
79 80 3.118629 TGTCACTTGACTGAGACTTTGCT 60.119 43.478 10.63 0.00 44.99 3.91
80 81 4.099419 TGTCACTTGACTGAGACTTTGCTA 59.901 41.667 10.63 0.00 44.99 3.49
81 82 5.050490 GTCACTTGACTGAGACTTTGCTAA 58.950 41.667 1.92 0.00 41.65 3.09
82 83 5.523916 GTCACTTGACTGAGACTTTGCTAAA 59.476 40.000 1.92 0.00 41.65 1.85
83 84 6.203723 GTCACTTGACTGAGACTTTGCTAAAT 59.796 38.462 1.92 0.00 41.65 1.40
84 85 6.425114 TCACTTGACTGAGACTTTGCTAAATC 59.575 38.462 0.00 0.00 0.00 2.17
85 86 6.426328 CACTTGACTGAGACTTTGCTAAATCT 59.574 38.462 0.00 0.00 0.00 2.40
86 87 6.648725 ACTTGACTGAGACTTTGCTAAATCTC 59.351 38.462 11.61 11.61 38.46 2.75
87 88 6.101650 TGACTGAGACTTTGCTAAATCTCA 57.898 37.500 18.42 18.42 44.05 3.27
90 91 4.256920 TGAGACTTTGCTAAATCTCAGCC 58.743 43.478 16.20 0.00 41.99 4.85
91 92 3.265791 AGACTTTGCTAAATCTCAGCCG 58.734 45.455 0.00 0.00 38.29 5.52
92 93 3.055819 AGACTTTGCTAAATCTCAGCCGA 60.056 43.478 0.00 0.00 38.29 5.54
93 94 3.003480 ACTTTGCTAAATCTCAGCCGAC 58.997 45.455 0.00 0.00 38.29 4.79
94 95 3.265791 CTTTGCTAAATCTCAGCCGACT 58.734 45.455 0.00 0.00 38.29 4.18
95 96 4.081642 ACTTTGCTAAATCTCAGCCGACTA 60.082 41.667 0.00 0.00 38.29 2.59
96 97 4.465632 TTGCTAAATCTCAGCCGACTAA 57.534 40.909 0.00 0.00 38.29 2.24
97 98 4.046938 TGCTAAATCTCAGCCGACTAAG 57.953 45.455 0.00 0.00 38.29 2.18
98 99 3.699538 TGCTAAATCTCAGCCGACTAAGA 59.300 43.478 0.00 0.00 38.29 2.10
99 100 4.045783 GCTAAATCTCAGCCGACTAAGAC 58.954 47.826 0.00 0.00 32.68 3.01
100 101 3.528597 AAATCTCAGCCGACTAAGACC 57.471 47.619 0.00 0.00 0.00 3.85
101 102 2.445682 ATCTCAGCCGACTAAGACCT 57.554 50.000 0.00 0.00 0.00 3.85
102 103 3.579534 ATCTCAGCCGACTAAGACCTA 57.420 47.619 0.00 0.00 0.00 3.08
103 104 2.920524 TCTCAGCCGACTAAGACCTAG 58.079 52.381 0.00 0.00 0.00 3.02
104 105 1.335496 CTCAGCCGACTAAGACCTAGC 59.665 57.143 0.00 0.00 0.00 3.42
105 106 0.386113 CAGCCGACTAAGACCTAGCC 59.614 60.000 0.00 0.00 0.00 3.93
106 107 0.033405 AGCCGACTAAGACCTAGCCA 60.033 55.000 0.00 0.00 0.00 4.75
107 108 0.102663 GCCGACTAAGACCTAGCCAC 59.897 60.000 0.00 0.00 0.00 5.01
108 109 1.471119 CCGACTAAGACCTAGCCACA 58.529 55.000 0.00 0.00 0.00 4.17
109 110 1.134560 CCGACTAAGACCTAGCCACAC 59.865 57.143 0.00 0.00 0.00 3.82
110 111 1.134560 CGACTAAGACCTAGCCACACC 59.865 57.143 0.00 0.00 0.00 4.16
111 112 1.481363 GACTAAGACCTAGCCACACCC 59.519 57.143 0.00 0.00 0.00 4.61
119 120 0.464373 CTAGCCACACCCAATCGCAT 60.464 55.000 0.00 0.00 0.00 4.73
123 124 0.393673 CCACACCCAATCGCATACCA 60.394 55.000 0.00 0.00 0.00 3.25
126 127 1.016627 CACCCAATCGCATACCACAG 58.983 55.000 0.00 0.00 0.00 3.66
134 135 1.300971 CGCATACCACAGCTTGCAGT 61.301 55.000 6.62 0.00 34.80 4.40
150 151 3.179048 TGCAGTCGATCGAACATGTTAG 58.821 45.455 21.31 12.00 0.00 2.34
200 201 3.474904 CAATTCGACGCGGCGACA 61.475 61.111 40.16 27.67 40.42 4.35
230 231 4.748892 CCATTAGGCCATAGAGTACATCG 58.251 47.826 5.01 0.00 0.00 3.84
266 267 4.762251 CAGACCTAGAAAAAGGAGGTTTGG 59.238 45.833 3.51 0.00 43.78 3.28
292 293 3.931768 ACCGGCGTTGGTAATAACA 57.068 47.368 6.01 0.00 41.55 2.41
310 321 3.036429 ATTGCTCGGTCCCAGCTCC 62.036 63.158 10.06 0.00 37.79 4.70
318 329 3.717294 TCCCAGCTCCCGGAAAGC 61.717 66.667 18.08 18.08 40.14 3.51
396 408 2.762459 CGCCCACCCAGCTACCTA 60.762 66.667 0.00 0.00 0.00 3.08
397 409 2.140792 CGCCCACCCAGCTACCTAT 61.141 63.158 0.00 0.00 0.00 2.57
411 460 5.046950 CAGCTACCTATAAGGCTTTCCCTAG 60.047 48.000 4.45 2.29 45.62 3.02
414 463 6.042897 GCTACCTATAAGGCTTTCCCTAGAAA 59.957 42.308 4.45 0.00 45.62 2.52
415 464 6.903340 ACCTATAAGGCTTTCCCTAGAAAA 57.097 37.500 4.45 0.00 45.62 2.29
416 465 7.280044 ACCTATAAGGCTTTCCCTAGAAAAA 57.720 36.000 4.45 0.00 45.62 1.94
577 637 0.903942 GGAAAAGGAATGCCATGCCA 59.096 50.000 4.04 0.00 36.29 4.92
579 639 2.624636 GAAAAGGAATGCCATGCCAAG 58.375 47.619 4.04 0.00 36.29 3.61
580 640 0.251073 AAAGGAATGCCATGCCAAGC 59.749 50.000 4.04 0.00 36.29 4.01
582 642 2.105528 GAATGCCATGCCAAGCCG 59.894 61.111 0.00 0.00 0.00 5.52
583 643 4.151582 AATGCCATGCCAAGCCGC 62.152 61.111 0.00 0.00 0.00 6.53
633 702 1.705337 CGCATCAACACACCGATCCC 61.705 60.000 0.00 0.00 0.00 3.85
646 715 1.749334 CGATCCCAGGCCTACAGACC 61.749 65.000 3.98 0.00 0.00 3.85
657 726 2.749800 GCCTACAGACCCCATGATTTCC 60.750 54.545 0.00 0.00 0.00 3.13
698 769 0.891373 AGATGTCAGTGTCTCGGTGG 59.109 55.000 0.00 0.00 0.00 4.61
786 862 1.227943 TGTCTCTTGCCAGTGCCAC 60.228 57.895 0.00 0.00 36.33 5.01
908 984 0.179073 CCCCTAGCAATCTCACACCG 60.179 60.000 0.00 0.00 0.00 4.94
917 993 0.740868 ATCTCACACCGCATTCCACG 60.741 55.000 0.00 0.00 0.00 4.94
932 1008 1.151777 CCACGGACCATATCACACGC 61.152 60.000 0.00 0.00 0.00 5.34
960 1036 4.727507 ACCACTGTTGTAGATAGCTCTG 57.272 45.455 0.00 0.00 32.66 3.35
1014 1114 0.596083 CGAGAATGGCAGCTAGGACG 60.596 60.000 0.00 0.00 0.00 4.79
1016 1116 0.461961 AGAATGGCAGCTAGGACGTC 59.538 55.000 7.13 7.13 0.00 4.34
1029 1129 1.154016 GACGTCGCTGCTGCTTCTA 60.154 57.895 14.03 0.00 36.97 2.10
1030 1130 1.406970 GACGTCGCTGCTGCTTCTAC 61.407 60.000 14.03 5.74 36.97 2.59
1031 1131 1.153939 CGTCGCTGCTGCTTCTACT 60.154 57.895 14.03 0.00 36.97 2.57
1032 1132 1.136872 CGTCGCTGCTGCTTCTACTC 61.137 60.000 14.03 0.00 36.97 2.59
1035 1135 2.512301 GCTGCTGCTTCTACTCGCG 61.512 63.158 8.53 0.00 36.03 5.87
1042 1142 4.492160 TTCTACTCGCGCTGGCCG 62.492 66.667 5.56 0.00 40.75 6.13
1188 1288 4.828925 GAGGCGACCTGCTGCTCC 62.829 72.222 0.00 0.00 45.43 4.70
1257 1357 3.164269 CAGGGCGGCCAGGACTAT 61.164 66.667 31.59 3.91 0.00 2.12
1419 1523 3.384789 ACGCCTATCAATAGCTGACTGAA 59.615 43.478 0.00 0.00 36.69 3.02
1420 1524 3.986572 CGCCTATCAATAGCTGACTGAAG 59.013 47.826 0.00 0.00 36.69 3.02
1424 1528 3.510388 TCAATAGCTGACTGAAGACGG 57.490 47.619 0.00 0.00 0.00 4.79
1427 1531 4.021456 TCAATAGCTGACTGAAGACGGAAA 60.021 41.667 0.00 0.00 0.00 3.13
1432 1536 3.717707 CTGACTGAAGACGGAAAGTTCA 58.282 45.455 0.00 0.00 0.00 3.18
1441 1545 5.135508 AGACGGAAAGTTCATATATCGGG 57.864 43.478 0.00 0.00 0.00 5.14
1460 1564 1.202428 GGTTGAGCGATAGTCACTCCC 60.202 57.143 0.00 0.00 39.35 4.30
1461 1565 1.476891 GTTGAGCGATAGTCACTCCCA 59.523 52.381 0.00 0.00 39.35 4.37
1464 1651 2.766263 TGAGCGATAGTCACTCCCATTT 59.234 45.455 0.00 0.00 39.35 2.32
1467 1654 4.192317 AGCGATAGTCACTCCCATTTTTC 58.808 43.478 0.00 0.00 39.35 2.29
1472 1659 7.265673 CGATAGTCACTCCCATTTTTCTCTTA 58.734 38.462 0.00 0.00 0.00 2.10
1481 1668 8.579863 ACTCCCATTTTTCTCTTACAATTTCTG 58.420 33.333 0.00 0.00 0.00 3.02
1515 1702 1.812708 GCCGTAGTTGTTGTTGGGTCT 60.813 52.381 0.00 0.00 0.00 3.85
1519 1706 1.102978 AGTTGTTGTTGGGTCTGTGC 58.897 50.000 0.00 0.00 0.00 4.57
1520 1707 0.248458 GTTGTTGTTGGGTCTGTGCG 60.248 55.000 0.00 0.00 0.00 5.34
1525 1712 1.817941 GTTGGGTCTGTGCGTGTGT 60.818 57.895 0.00 0.00 0.00 3.72
1526 1713 1.817520 TTGGGTCTGTGCGTGTGTG 60.818 57.895 0.00 0.00 0.00 3.82
1534 1727 0.029167 TGTGCGTGTGTGAATTGCAG 59.971 50.000 0.00 0.00 36.03 4.41
1549 1742 9.979578 TGTGAATTGCAGTTTTAATTTAGTGAT 57.020 25.926 0.00 0.00 0.00 3.06
1565 1758 9.683069 AATTTAGTGATGAAAAGTGTAAGCTTG 57.317 29.630 9.86 0.00 0.00 4.01
1566 1759 5.113502 AGTGATGAAAAGTGTAAGCTTGC 57.886 39.130 9.86 8.72 0.00 4.01
1567 1760 4.580167 AGTGATGAAAAGTGTAAGCTTGCA 59.420 37.500 13.67 13.67 0.00 4.08
1568 1761 4.676924 GTGATGAAAAGTGTAAGCTTGCAC 59.323 41.667 32.70 32.70 42.99 4.57
1591 1784 7.756722 GCACTTTTTCAGTCGGTTATAGTACTA 59.243 37.037 4.77 4.77 30.92 1.82
1592 1785 9.070149 CACTTTTTCAGTCGGTTATAGTACTAC 57.930 37.037 4.31 0.00 30.92 2.73
1593 1786 9.018582 ACTTTTTCAGTCGGTTATAGTACTACT 57.981 33.333 4.31 0.00 0.00 2.57
1599 1792 9.672673 TCAGTCGGTTATAGTACTACTACTTTT 57.327 33.333 4.31 0.00 32.84 2.27
1614 1807 9.609346 ACTACTACTTTTTCTAGAAAAGTGCAA 57.391 29.630 25.38 13.14 46.41 4.08
1633 1826 7.799784 AGTGCAAATTTCATATTTTGTTGAGC 58.200 30.769 0.00 0.00 35.69 4.26
1634 1827 7.658575 AGTGCAAATTTCATATTTTGTTGAGCT 59.341 29.630 0.00 0.00 35.69 4.09
1635 1828 7.742963 GTGCAAATTTCATATTTTGTTGAGCTG 59.257 33.333 0.00 0.00 35.69 4.24
1636 1829 7.656542 TGCAAATTTCATATTTTGTTGAGCTGA 59.343 29.630 0.00 0.00 35.69 4.26
1637 1830 8.497554 GCAAATTTCATATTTTGTTGAGCTGAA 58.502 29.630 0.00 0.00 35.69 3.02
1639 1832 9.768662 AAATTTCATATTTTGTTGAGCTGAAGT 57.231 25.926 0.00 0.00 0.00 3.01
1640 1833 9.768662 AATTTCATATTTTGTTGAGCTGAAGTT 57.231 25.926 0.00 0.00 0.00 2.66
1641 1834 9.768662 ATTTCATATTTTGTTGAGCTGAAGTTT 57.231 25.926 0.00 0.00 0.00 2.66
1642 1835 8.801715 TTCATATTTTGTTGAGCTGAAGTTTC 57.198 30.769 0.00 0.00 0.00 2.78
1645 1838 9.199982 CATATTTTGTTGAGCTGAAGTTTCATT 57.800 29.630 0.00 0.00 36.46 2.57
1664 1857 8.962111 GTTTCATTTTTCAGAATCAGTTGAGAC 58.038 33.333 0.00 0.00 0.00 3.36
1667 1860 9.559732 TCATTTTTCAGAATCAGTTGAGACTTA 57.440 29.630 0.00 0.00 32.54 2.24
1674 1867 9.613428 TCAGAATCAGTTGAGACTTAAGAAAAA 57.387 29.630 10.09 0.00 32.54 1.94
1697 2019 8.472683 AAATCTGAAAATCTTAGTCGAGTGAG 57.527 34.615 5.70 5.70 0.00 3.51
1713 2035 3.935828 GAGTGAGACCTAGCAAAACCATC 59.064 47.826 0.00 0.00 0.00 3.51
1715 2037 1.666189 GAGACCTAGCAAAACCATCGC 59.334 52.381 0.00 0.00 0.00 4.58
1782 2104 5.181622 ACGGAACTATATTCTGACGATCTCC 59.818 44.000 2.55 0.00 0.00 3.71
1888 2211 5.109210 TGATTCCGCATATATCATTCGACC 58.891 41.667 0.00 0.00 0.00 4.79
1914 5061 6.932356 ATCTCAGCAAAGTACCAACATATG 57.068 37.500 0.00 0.00 0.00 1.78
2055 5205 4.082523 CCGTCACCATCCACGCCT 62.083 66.667 0.00 0.00 34.58 5.52
2194 5344 4.319249 CAGCGACTGTCGTTGTGA 57.681 55.556 30.50 0.00 44.29 3.58
2195 5345 2.814410 CAGCGACTGTCGTTGTGAT 58.186 52.632 30.50 10.48 44.29 3.06
2199 5349 1.060713 CGACTGTCGTTGTGATGACC 58.939 55.000 21.30 0.00 40.41 4.02
2206 5356 1.354337 CGTTGTGATGACCCTGCTCG 61.354 60.000 0.00 0.00 0.00 5.03
2247 5402 4.501400 GCCTGTAATTCAGCAAACCTGTTT 60.501 41.667 0.00 0.00 42.38 2.83
2259 5417 2.234300 ACCTGTTTCGTCGTTCATGT 57.766 45.000 0.00 0.00 0.00 3.21
2268 5426 3.135225 TCGTCGTTCATGTGACCATTTT 58.865 40.909 8.98 0.00 0.00 1.82
2382 5544 8.902806 GTTTCCATTCCATTTATACAGATGTCA 58.097 33.333 0.00 0.00 0.00 3.58
2413 5602 9.855021 CATATATATGACTCGTTTCCATACACA 57.145 33.333 16.44 0.00 35.75 3.72
2430 5619 2.880890 ACACAATGAGACTGCTTGGTTC 59.119 45.455 0.00 0.00 0.00 3.62
2440 5629 1.203052 CTGCTTGGTTCGATGCCAATT 59.797 47.619 18.39 0.00 44.06 2.32
2460 5649 2.726909 TGGCATGCCAACGTGTTG 59.273 55.556 36.95 5.76 44.12 3.33
2473 5673 4.606961 CAACGTGTTGGCACTCTAAAAAT 58.393 39.130 4.82 0.00 43.16 1.82
2474 5674 4.911514 ACGTGTTGGCACTCTAAAAATT 57.088 36.364 0.00 0.00 43.16 1.82
2477 5677 4.444056 CGTGTTGGCACTCTAAAAATTTGG 59.556 41.667 0.00 0.00 43.16 3.28
2485 5685 5.335348 GCACTCTAAAAATTTGGCTACCGAA 60.335 40.000 0.00 0.00 0.00 4.30
2497 5697 2.159379 GGCTACCGAATTTTCTTGCCAG 60.159 50.000 0.00 0.00 38.99 4.85
2516 6135 4.679372 GCCAGTCTCTAGAAAAGTAGCCTG 60.679 50.000 0.00 0.00 0.00 4.85
2553 6172 2.758089 GCTGGCATCAGACCAAGCG 61.758 63.158 0.00 0.00 43.49 4.68
2562 6181 1.600916 AGACCAAGCGGCCAGAAAC 60.601 57.895 2.24 0.00 34.57 2.78
2576 6195 1.806542 CAGAAACGGGGTGAGATTGTG 59.193 52.381 0.00 0.00 0.00 3.33
2596 6215 2.356313 AAGTGTCACGGCGAGCAG 60.356 61.111 16.62 0.00 0.00 4.24
2612 6231 3.533547 GAGCAGCTCATTCAGAACAGAT 58.466 45.455 18.17 0.00 0.00 2.90
2620 6239 5.160607 TCATTCAGAACAGATACGGGTTT 57.839 39.130 0.00 0.00 0.00 3.27
2621 6240 5.556915 TCATTCAGAACAGATACGGGTTTT 58.443 37.500 0.00 0.00 0.00 2.43
2623 6242 5.682943 TTCAGAACAGATACGGGTTTTTG 57.317 39.130 0.00 0.00 0.00 2.44
2624 6243 3.500680 TCAGAACAGATACGGGTTTTTGC 59.499 43.478 0.00 0.00 0.00 3.68
2625 6244 2.817844 AGAACAGATACGGGTTTTTGCC 59.182 45.455 0.00 0.00 0.00 4.52
2627 6246 2.433436 ACAGATACGGGTTTTTGCCTC 58.567 47.619 0.00 0.00 0.00 4.70
2629 6248 2.420022 CAGATACGGGTTTTTGCCTCTG 59.580 50.000 0.00 0.00 0.00 3.35
2631 6250 2.351706 TACGGGTTTTTGCCTCTGTT 57.648 45.000 0.00 0.00 0.00 3.16
2633 6252 2.657143 ACGGGTTTTTGCCTCTGTTTA 58.343 42.857 0.00 0.00 0.00 2.01
2634 6253 3.025262 ACGGGTTTTTGCCTCTGTTTAA 58.975 40.909 0.00 0.00 0.00 1.52
2636 6255 4.081586 ACGGGTTTTTGCCTCTGTTTAAAA 60.082 37.500 0.00 0.00 0.00 1.52
2637 6256 4.870991 CGGGTTTTTGCCTCTGTTTAAAAA 59.129 37.500 0.00 0.00 31.72 1.94
2660 6279 6.961359 AAAAGGAAAGAAAAACAGAAACGG 57.039 33.333 0.00 0.00 0.00 4.44
2661 6280 4.649088 AGGAAAGAAAAACAGAAACGGG 57.351 40.909 0.00 0.00 0.00 5.28
2662 6281 4.021229 AGGAAAGAAAAACAGAAACGGGT 58.979 39.130 0.00 0.00 0.00 5.28
2663 6282 4.109766 GGAAAGAAAAACAGAAACGGGTG 58.890 43.478 0.00 0.00 0.00 4.61
2664 6283 4.142337 GGAAAGAAAAACAGAAACGGGTGA 60.142 41.667 0.00 0.00 0.00 4.02
2665 6284 5.451381 GGAAAGAAAAACAGAAACGGGTGAT 60.451 40.000 0.00 0.00 0.00 3.06
2666 6285 4.830826 AGAAAAACAGAAACGGGTGATC 57.169 40.909 0.00 0.00 0.00 2.92
2667 6286 3.250040 AGAAAAACAGAAACGGGTGATCG 59.750 43.478 0.00 0.00 0.00 3.69
2668 6287 1.519408 AAACAGAAACGGGTGATCGG 58.481 50.000 0.00 0.00 0.00 4.18
2669 6288 0.682852 AACAGAAACGGGTGATCGGA 59.317 50.000 0.00 0.00 0.00 4.55
2670 6289 0.902531 ACAGAAACGGGTGATCGGAT 59.097 50.000 0.00 0.00 0.00 4.18
2671 6290 2.104967 ACAGAAACGGGTGATCGGATA 58.895 47.619 0.00 0.00 0.00 2.59
2672 6291 2.159142 ACAGAAACGGGTGATCGGATAC 60.159 50.000 0.00 0.00 0.00 2.24
2697 6316 2.631160 TTTTCAGAGGCCAGAAACGA 57.369 45.000 15.03 2.66 33.82 3.85
2708 6327 2.876079 GCCAGAAACGAGGGTGAGATTT 60.876 50.000 0.00 0.00 0.00 2.17
2712 6331 4.697352 CAGAAACGAGGGTGAGATTTTGAT 59.303 41.667 0.00 0.00 0.00 2.57
2729 6348 1.000843 TGATAAGTGTCACAGCGTGCT 59.999 47.619 5.62 0.00 32.98 4.40
2730 6349 1.656095 GATAAGTGTCACAGCGTGCTC 59.344 52.381 5.62 1.87 32.98 4.26
2731 6350 0.673985 TAAGTGTCACAGCGTGCTCT 59.326 50.000 5.62 3.94 32.98 4.09
2732 6351 0.673985 AAGTGTCACAGCGTGCTCTA 59.326 50.000 5.62 0.00 32.98 2.43
2733 6352 0.673985 AGTGTCACAGCGTGCTCTAA 59.326 50.000 5.62 0.00 32.98 2.10
2734 6353 1.273606 AGTGTCACAGCGTGCTCTAAT 59.726 47.619 5.62 0.00 32.98 1.73
2735 6354 1.656095 GTGTCACAGCGTGCTCTAATC 59.344 52.381 0.00 0.00 32.98 1.75
2736 6355 1.546029 TGTCACAGCGTGCTCTAATCT 59.454 47.619 0.00 0.00 32.98 2.40
2737 6356 2.029020 TGTCACAGCGTGCTCTAATCTT 60.029 45.455 0.00 0.00 32.98 2.40
2738 6357 2.996621 GTCACAGCGTGCTCTAATCTTT 59.003 45.455 0.00 0.00 32.98 2.52
2739 6358 2.995939 TCACAGCGTGCTCTAATCTTTG 59.004 45.455 0.00 0.00 32.98 2.77
2740 6359 2.738846 CACAGCGTGCTCTAATCTTTGT 59.261 45.455 0.00 0.00 0.00 2.83
2741 6360 3.926527 CACAGCGTGCTCTAATCTTTGTA 59.073 43.478 0.00 0.00 0.00 2.41
2742 6361 4.568359 CACAGCGTGCTCTAATCTTTGTAT 59.432 41.667 0.00 0.00 0.00 2.29
2743 6362 5.063944 CACAGCGTGCTCTAATCTTTGTATT 59.936 40.000 0.00 0.00 0.00 1.89
2744 6363 5.292101 ACAGCGTGCTCTAATCTTTGTATTC 59.708 40.000 0.00 0.00 0.00 1.75
2745 6364 5.291858 CAGCGTGCTCTAATCTTTGTATTCA 59.708 40.000 0.00 0.00 0.00 2.57
2746 6365 6.018425 CAGCGTGCTCTAATCTTTGTATTCAT 60.018 38.462 0.00 0.00 0.00 2.57
2747 6366 6.540189 AGCGTGCTCTAATCTTTGTATTCATT 59.460 34.615 0.00 0.00 0.00 2.57
2748 6367 6.630443 GCGTGCTCTAATCTTTGTATTCATTG 59.370 38.462 0.00 0.00 0.00 2.82
2749 6368 7.677276 GCGTGCTCTAATCTTTGTATTCATTGT 60.677 37.037 0.00 0.00 0.00 2.71
2750 6369 7.637519 CGTGCTCTAATCTTTGTATTCATTGTG 59.362 37.037 0.00 0.00 0.00 3.33
2751 6370 7.430502 GTGCTCTAATCTTTGTATTCATTGTGC 59.569 37.037 0.00 0.00 0.00 4.57
2752 6371 7.337689 TGCTCTAATCTTTGTATTCATTGTGCT 59.662 33.333 0.00 0.00 0.00 4.40
2756 6375 7.692460 AATCTTTGTATTCATTGTGCTCTCA 57.308 32.000 0.00 0.00 0.00 3.27
2757 6376 7.876936 ATCTTTGTATTCATTGTGCTCTCAT 57.123 32.000 0.00 0.00 0.00 2.90
2764 6383 5.874895 TTCATTGTGCTCTCATTCAGAAG 57.125 39.130 0.00 0.00 0.00 2.85
2810 6434 9.581289 TGTTTATATTCTAGCTTAGCTCTCTCT 57.419 33.333 11.09 0.00 40.44 3.10
2829 6453 9.410556 CTCTCTCTATTCTTTGCTTAAGCTATC 57.589 37.037 26.90 0.00 42.66 2.08
2830 6454 8.918116 TCTCTCTATTCTTTGCTTAAGCTATCA 58.082 33.333 26.90 5.02 42.66 2.15
2835 6459 7.870509 ATTCTTTGCTTAAGCTATCATGTCA 57.129 32.000 26.90 1.54 42.66 3.58
2845 6469 5.417754 AGCTATCATGTCATGTAGATGGG 57.582 43.478 18.72 5.60 29.82 4.00
2846 6470 4.224594 AGCTATCATGTCATGTAGATGGGG 59.775 45.833 18.72 4.79 29.82 4.96
2847 6471 4.223700 GCTATCATGTCATGTAGATGGGGA 59.776 45.833 18.72 0.00 29.82 4.81
2849 6473 3.927476 TCATGTCATGTAGATGGGGAGA 58.073 45.455 12.54 0.00 29.82 3.71
2850 6474 4.496540 TCATGTCATGTAGATGGGGAGAT 58.503 43.478 12.54 0.00 29.82 2.75
2851 6475 4.285260 TCATGTCATGTAGATGGGGAGATG 59.715 45.833 12.54 0.00 32.39 2.90
2852 6476 2.974794 TGTCATGTAGATGGGGAGATGG 59.025 50.000 0.00 0.00 0.00 3.51
2853 6477 1.980765 TCATGTAGATGGGGAGATGGC 59.019 52.381 0.00 0.00 0.00 4.40
2854 6478 1.701292 CATGTAGATGGGGAGATGGCA 59.299 52.381 0.00 0.00 0.00 4.92
2858 6482 1.059006 AGATGGGGAGATGGCACCTC 61.059 60.000 0.00 0.00 0.00 3.85
2862 6486 2.818132 GGAGATGGCACCTCCGAG 59.182 66.667 13.32 0.00 40.58 4.63
2863 6487 2.060980 GGAGATGGCACCTCCGAGT 61.061 63.158 13.32 0.00 40.58 4.18
2867 6491 1.079127 ATGGCACCTCCGAGTTTCG 60.079 57.895 0.00 0.00 40.07 3.46
2875 6499 0.108615 CTCCGAGTTTCGCACATCCT 60.109 55.000 0.00 0.00 38.82 3.24
2902 6527 8.404000 GGATATGATTAATGCATGGAAGCTAAG 58.596 37.037 0.00 0.00 34.99 2.18
2903 6528 5.443185 TGATTAATGCATGGAAGCTAAGC 57.557 39.130 0.00 0.00 34.99 3.09
2948 6609 2.798976 TGCAAGCATTTGAACTCCAC 57.201 45.000 0.00 0.00 36.36 4.02
2956 6617 3.181500 GCATTTGAACTCCACCCGAATAC 60.181 47.826 0.00 0.00 0.00 1.89
3090 6751 1.332889 CCCCGGAGTAACCCAGGTAC 61.333 65.000 0.73 0.00 34.64 3.34
3159 6820 1.003580 CTGCCCACTTCCTTTGCTCTA 59.996 52.381 0.00 0.00 0.00 2.43
3171 6832 2.820973 GCTCTAGCAGCCAGGAGG 59.179 66.667 0.00 0.00 43.17 4.30
3174 6835 1.733402 CTCTAGCAGCCAGGAGGTCG 61.733 65.000 0.00 0.00 37.19 4.79
3195 6856 3.019564 GGCAATCTCCTGCACAAGTTAT 58.980 45.455 0.00 0.00 44.52 1.89
3197 6858 3.733077 GCAATCTCCTGCACAAGTTATGC 60.733 47.826 0.00 0.00 42.17 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.753897 AAAGAAAATTTGCACGAATCTCAC 57.246 33.333 0.00 0.00 0.00 3.51
1 2 6.977502 TGAAAAGAAAATTTGCACGAATCTCA 59.022 30.769 0.00 0.00 0.00 3.27
2 3 7.168135 ACTGAAAAGAAAATTTGCACGAATCTC 59.832 33.333 0.00 0.00 0.00 2.75
3 4 6.980397 ACTGAAAAGAAAATTTGCACGAATCT 59.020 30.769 0.00 0.00 0.00 2.40
4 5 7.165427 ACTGAAAAGAAAATTTGCACGAATC 57.835 32.000 0.00 0.00 0.00 2.52
5 6 7.538303 AACTGAAAAGAAAATTTGCACGAAT 57.462 28.000 0.00 0.00 0.00 3.34
6 7 6.959671 AACTGAAAAGAAAATTTGCACGAA 57.040 29.167 0.00 0.00 0.00 3.85
7 8 6.959671 AAACTGAAAAGAAAATTTGCACGA 57.040 29.167 0.00 0.00 0.00 4.35
39 40 9.734620 CAAGTGACATAACATTCAAGAGAAAAA 57.265 29.630 0.00 0.00 37.29 1.94
40 41 9.119418 TCAAGTGACATAACATTCAAGAGAAAA 57.881 29.630 0.00 0.00 37.29 2.29
41 42 8.559536 GTCAAGTGACATAACATTCAAGAGAAA 58.440 33.333 6.57 0.00 44.18 2.52
42 43 8.087982 GTCAAGTGACATAACATTCAAGAGAA 57.912 34.615 6.57 0.00 44.18 2.87
43 44 7.658179 GTCAAGTGACATAACATTCAAGAGA 57.342 36.000 6.57 0.00 44.18 3.10
58 59 3.462021 AGCAAAGTCTCAGTCAAGTGAC 58.538 45.455 3.12 3.12 45.08 3.67
59 60 3.827008 AGCAAAGTCTCAGTCAAGTGA 57.173 42.857 0.00 0.00 0.00 3.41
60 61 5.991328 TTTAGCAAAGTCTCAGTCAAGTG 57.009 39.130 0.00 0.00 0.00 3.16
61 62 6.529220 AGATTTAGCAAAGTCTCAGTCAAGT 58.471 36.000 0.00 0.00 0.00 3.16
62 63 6.648310 TGAGATTTAGCAAAGTCTCAGTCAAG 59.352 38.462 8.68 0.00 41.40 3.02
63 64 6.524734 TGAGATTTAGCAAAGTCTCAGTCAA 58.475 36.000 8.68 0.00 41.40 3.18
64 65 6.101650 TGAGATTTAGCAAAGTCTCAGTCA 57.898 37.500 8.68 0.00 41.40 3.41
68 69 4.256920 GGCTGAGATTTAGCAAAGTCTCA 58.743 43.478 11.35 11.35 43.34 3.27
69 70 3.308323 CGGCTGAGATTTAGCAAAGTCTC 59.692 47.826 0.00 4.28 42.88 3.36
70 71 3.055819 TCGGCTGAGATTTAGCAAAGTCT 60.056 43.478 0.00 0.00 42.88 3.24
71 72 3.062774 GTCGGCTGAGATTTAGCAAAGTC 59.937 47.826 0.00 0.00 42.88 3.01
72 73 3.003480 GTCGGCTGAGATTTAGCAAAGT 58.997 45.455 0.00 0.00 42.88 2.66
73 74 3.265791 AGTCGGCTGAGATTTAGCAAAG 58.734 45.455 0.00 0.00 42.88 2.77
74 75 3.334583 AGTCGGCTGAGATTTAGCAAA 57.665 42.857 0.00 0.00 42.88 3.68
75 76 4.159693 TCTTAGTCGGCTGAGATTTAGCAA 59.840 41.667 7.52 0.00 42.88 3.91
76 77 3.699538 TCTTAGTCGGCTGAGATTTAGCA 59.300 43.478 7.52 0.00 42.88 3.49
77 78 4.045783 GTCTTAGTCGGCTGAGATTTAGC 58.954 47.826 15.09 0.00 39.16 3.09
78 79 4.339814 AGGTCTTAGTCGGCTGAGATTTAG 59.660 45.833 15.09 0.00 39.16 1.85
79 80 4.279145 AGGTCTTAGTCGGCTGAGATTTA 58.721 43.478 15.09 0.00 39.16 1.40
80 81 3.100671 AGGTCTTAGTCGGCTGAGATTT 58.899 45.455 15.09 3.66 39.16 2.17
81 82 2.741145 AGGTCTTAGTCGGCTGAGATT 58.259 47.619 15.09 4.02 39.16 2.40
82 83 2.445682 AGGTCTTAGTCGGCTGAGAT 57.554 50.000 15.09 0.00 39.16 2.75
83 84 2.920524 CTAGGTCTTAGTCGGCTGAGA 58.079 52.381 7.52 7.52 35.36 3.27
84 85 1.335496 GCTAGGTCTTAGTCGGCTGAG 59.665 57.143 1.70 1.70 0.00 3.35
85 86 1.390565 GCTAGGTCTTAGTCGGCTGA 58.609 55.000 0.00 0.00 0.00 4.26
86 87 0.386113 GGCTAGGTCTTAGTCGGCTG 59.614 60.000 0.00 0.00 0.00 4.85
87 88 0.033405 TGGCTAGGTCTTAGTCGGCT 60.033 55.000 0.00 0.00 36.76 5.52
88 89 0.102663 GTGGCTAGGTCTTAGTCGGC 59.897 60.000 0.00 0.00 36.76 5.54
89 90 1.134560 GTGTGGCTAGGTCTTAGTCGG 59.865 57.143 0.00 0.00 36.76 4.79
90 91 1.134560 GGTGTGGCTAGGTCTTAGTCG 59.865 57.143 0.00 0.00 36.76 4.18
91 92 1.481363 GGGTGTGGCTAGGTCTTAGTC 59.519 57.143 0.00 0.00 34.46 2.59
92 93 1.203262 TGGGTGTGGCTAGGTCTTAGT 60.203 52.381 0.00 0.00 0.00 2.24
93 94 1.568504 TGGGTGTGGCTAGGTCTTAG 58.431 55.000 0.00 0.00 0.00 2.18
94 95 2.032965 TTGGGTGTGGCTAGGTCTTA 57.967 50.000 0.00 0.00 0.00 2.10
95 96 1.282157 GATTGGGTGTGGCTAGGTCTT 59.718 52.381 0.00 0.00 0.00 3.01
96 97 0.912486 GATTGGGTGTGGCTAGGTCT 59.088 55.000 0.00 0.00 0.00 3.85
97 98 0.462047 CGATTGGGTGTGGCTAGGTC 60.462 60.000 0.00 0.00 0.00 3.85
98 99 1.602237 CGATTGGGTGTGGCTAGGT 59.398 57.895 0.00 0.00 0.00 3.08
99 100 1.819632 GCGATTGGGTGTGGCTAGG 60.820 63.158 0.00 0.00 0.00 3.02
100 101 0.464373 ATGCGATTGGGTGTGGCTAG 60.464 55.000 0.00 0.00 0.00 3.42
101 102 0.833949 TATGCGATTGGGTGTGGCTA 59.166 50.000 0.00 0.00 0.00 3.93
102 103 0.748005 GTATGCGATTGGGTGTGGCT 60.748 55.000 0.00 0.00 0.00 4.75
103 104 1.724582 GGTATGCGATTGGGTGTGGC 61.725 60.000 0.00 0.00 0.00 5.01
104 105 0.393673 TGGTATGCGATTGGGTGTGG 60.394 55.000 0.00 0.00 0.00 4.17
105 106 0.732571 GTGGTATGCGATTGGGTGTG 59.267 55.000 0.00 0.00 0.00 3.82
106 107 0.326595 TGTGGTATGCGATTGGGTGT 59.673 50.000 0.00 0.00 0.00 4.16
107 108 1.016627 CTGTGGTATGCGATTGGGTG 58.983 55.000 0.00 0.00 0.00 4.61
108 109 0.748005 GCTGTGGTATGCGATTGGGT 60.748 55.000 0.00 0.00 0.00 4.51
109 110 0.464373 AGCTGTGGTATGCGATTGGG 60.464 55.000 0.00 0.00 0.00 4.12
110 111 1.064505 CAAGCTGTGGTATGCGATTGG 59.935 52.381 0.00 0.00 0.00 3.16
111 112 1.532505 GCAAGCTGTGGTATGCGATTG 60.533 52.381 0.00 0.00 0.00 2.67
119 120 0.608130 ATCGACTGCAAGCTGTGGTA 59.392 50.000 9.35 0.27 37.60 3.25
123 124 0.038251 TTCGATCGACTGCAAGCTGT 60.038 50.000 19.26 4.18 37.60 4.40
126 127 1.002366 ATGTTCGATCGACTGCAAGC 58.998 50.000 19.26 0.00 37.60 4.01
134 135 1.835121 CCGCTAACATGTTCGATCGA 58.165 50.000 15.85 15.15 0.00 3.59
161 162 0.943673 CACGTCATGTCCAAGCAACA 59.056 50.000 0.00 0.00 0.00 3.33
221 222 1.368641 TGCAATGCCACGATGTACTC 58.631 50.000 1.53 0.00 0.00 2.59
223 224 2.097304 TGAATGCAATGCCACGATGTAC 59.903 45.455 1.53 0.00 0.00 2.90
224 225 2.355444 CTGAATGCAATGCCACGATGTA 59.645 45.455 1.53 0.00 0.00 2.29
225 226 1.133598 CTGAATGCAATGCCACGATGT 59.866 47.619 1.53 0.00 0.00 3.06
226 227 1.402613 TCTGAATGCAATGCCACGATG 59.597 47.619 1.53 0.00 0.00 3.84
230 231 1.180029 AGGTCTGAATGCAATGCCAC 58.820 50.000 1.53 0.00 0.00 5.01
266 267 0.952010 ACCAACGCCGGTATGAACAC 60.952 55.000 1.90 0.00 37.57 3.32
290 291 2.045926 GCTGGGACCGAGCAATGT 60.046 61.111 22.39 0.00 36.40 2.71
291 292 1.817099 GAGCTGGGACCGAGCAATG 60.817 63.158 27.81 0.00 39.05 2.82
292 293 2.586792 GAGCTGGGACCGAGCAAT 59.413 61.111 27.81 10.45 39.05 3.56
310 321 1.090052 GTGGAATCGAGGCTTTCCGG 61.090 60.000 10.94 0.00 43.61 5.14
318 329 2.797278 CGGGGGAGTGGAATCGAGG 61.797 68.421 0.00 0.00 0.00 4.63
341 353 0.949105 AAAGAAACCGAGCGCACGAT 60.949 50.000 28.63 9.06 35.09 3.73
414 463 3.433740 CGGGAGCCTTTAGGATAGCTTTT 60.434 47.826 0.00 0.00 35.23 2.27
415 464 2.104963 CGGGAGCCTTTAGGATAGCTTT 59.895 50.000 0.00 0.00 35.23 3.51
416 465 1.694696 CGGGAGCCTTTAGGATAGCTT 59.305 52.381 0.00 0.00 35.23 3.74
417 466 1.343069 CGGGAGCCTTTAGGATAGCT 58.657 55.000 0.00 0.00 38.56 3.32
418 467 0.321996 CCGGGAGCCTTTAGGATAGC 59.678 60.000 0.00 0.00 37.39 2.97
419 468 0.321996 GCCGGGAGCCTTTAGGATAG 59.678 60.000 2.18 0.00 37.39 2.08
420 469 2.448749 GCCGGGAGCCTTTAGGATA 58.551 57.895 2.18 0.00 37.39 2.59
421 470 3.241520 GCCGGGAGCCTTTAGGAT 58.758 61.111 2.18 0.00 37.39 3.24
433 482 1.829533 CCATGATCAAAGGGCCGGG 60.830 63.158 2.18 0.00 0.00 5.73
444 493 2.588877 CGGCCGGTGACCATGATC 60.589 66.667 20.10 0.00 0.00 2.92
478 538 0.875059 GGTGAGCCAAAAGAAGGTCG 59.125 55.000 0.00 0.00 33.19 4.79
577 637 0.400594 ACTAGTGAAAAGGGCGGCTT 59.599 50.000 9.56 0.00 0.00 4.35
579 639 1.305930 CCACTAGTGAAAAGGGCGGC 61.306 60.000 24.68 0.00 0.00 6.53
580 640 1.305930 GCCACTAGTGAAAAGGGCGG 61.306 60.000 24.68 5.08 0.00 6.13
582 642 1.168714 CAGCCACTAGTGAAAAGGGC 58.831 55.000 24.68 17.20 41.65 5.19
583 643 1.614317 CCCAGCCACTAGTGAAAAGGG 60.614 57.143 24.68 22.21 0.00 3.95
586 646 1.073284 GGTCCCAGCCACTAGTGAAAA 59.927 52.381 24.68 0.69 0.00 2.29
633 702 0.982852 TCATGGGGTCTGTAGGCCTG 60.983 60.000 17.99 0.00 0.00 4.85
646 715 1.856629 AGTGCTTGGGAAATCATGGG 58.143 50.000 0.00 0.00 0.00 4.00
657 726 3.349006 ACGCTGCGAAGTGCTTGG 61.349 61.111 30.47 0.00 46.63 3.61
698 769 3.186119 GCATATAGAGCAGCGATTCTCC 58.814 50.000 0.00 0.00 0.00 3.71
712 783 5.215160 GTCAAAGAAAATGGCGGCATATAG 58.785 41.667 26.05 10.88 0.00 1.31
713 784 4.037446 GGTCAAAGAAAATGGCGGCATATA 59.963 41.667 26.05 0.00 0.00 0.86
786 862 2.333938 GTTGCACTGTGCTGGCAG 59.666 61.111 30.43 10.94 45.31 4.85
854 930 1.717113 GGGCGTTTTTATGTTTGCGAC 59.283 47.619 0.00 0.00 0.00 5.19
887 963 0.912486 GTGTGAGATTGCTAGGGGGT 59.088 55.000 0.00 0.00 0.00 4.95
888 964 0.181350 GGTGTGAGATTGCTAGGGGG 59.819 60.000 0.00 0.00 0.00 5.40
889 965 0.179073 CGGTGTGAGATTGCTAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
890 966 0.811616 GCGGTGTGAGATTGCTAGGG 60.812 60.000 0.00 0.00 0.00 3.53
891 967 0.108186 TGCGGTGTGAGATTGCTAGG 60.108 55.000 0.00 0.00 0.00 3.02
908 984 1.873591 GTGATATGGTCCGTGGAATGC 59.126 52.381 0.00 0.00 0.00 3.56
917 993 1.409064 TCAGAGCGTGTGATATGGTCC 59.591 52.381 0.00 0.00 42.46 4.46
932 1008 5.578727 GCTATCTACAACAGTGGTTTCAGAG 59.421 44.000 0.00 0.00 34.21 3.35
1188 1288 4.003788 ACCACGTCCTTGAGCCCG 62.004 66.667 0.00 0.00 0.00 6.13
1257 1357 1.302431 CATGTTGAGGGTGACGCCA 60.302 57.895 7.48 0.00 39.65 5.69
1393 1497 2.361119 TCAGCTATTGATAGGCGTCGTT 59.639 45.455 0.00 0.00 0.00 3.85
1419 1523 4.587684 ACCCGATATATGAACTTTCCGTCT 59.412 41.667 0.00 0.00 0.00 4.18
1420 1524 4.879598 ACCCGATATATGAACTTTCCGTC 58.120 43.478 0.00 0.00 0.00 4.79
1424 1528 5.107453 CGCTCAACCCGATATATGAACTTTC 60.107 44.000 0.00 0.00 0.00 2.62
1427 1531 3.572682 TCGCTCAACCCGATATATGAACT 59.427 43.478 0.00 0.00 0.00 3.01
1432 1536 4.948004 TGACTATCGCTCAACCCGATATAT 59.052 41.667 4.27 0.00 43.98 0.86
1467 1654 8.482429 GCAATTGTTTCACAGAAATTGTAAGAG 58.518 33.333 7.40 0.00 40.50 2.85
1472 1659 5.006941 GCAGCAATTGTTTCACAGAAATTGT 59.993 36.000 7.40 0.00 40.50 2.71
1481 1668 2.031157 ACTACGGCAGCAATTGTTTCAC 60.031 45.455 7.40 0.00 0.00 3.18
1489 1676 1.604604 ACAACAACTACGGCAGCAAT 58.395 45.000 0.00 0.00 0.00 3.56
1491 1678 0.660488 CAACAACAACTACGGCAGCA 59.340 50.000 0.00 0.00 0.00 4.41
1492 1679 0.040425 CCAACAACAACTACGGCAGC 60.040 55.000 0.00 0.00 0.00 5.25
1493 1680 0.591170 CCCAACAACAACTACGGCAG 59.409 55.000 0.00 0.00 0.00 4.85
1494 1681 0.107116 ACCCAACAACAACTACGGCA 60.107 50.000 0.00 0.00 0.00 5.69
1495 1682 0.589708 GACCCAACAACAACTACGGC 59.410 55.000 0.00 0.00 0.00 5.68
1496 1683 1.871039 CAGACCCAACAACAACTACGG 59.129 52.381 0.00 0.00 0.00 4.02
1497 1684 2.286833 CACAGACCCAACAACAACTACG 59.713 50.000 0.00 0.00 0.00 3.51
1498 1685 2.032924 GCACAGACCCAACAACAACTAC 59.967 50.000 0.00 0.00 0.00 2.73
1515 1702 0.029167 CTGCAATTCACACACGCACA 59.971 50.000 0.00 0.00 0.00 4.57
1519 1706 6.509317 AATTAAAACTGCAATTCACACACG 57.491 33.333 0.00 0.00 0.00 4.49
1520 1707 9.030301 ACTAAATTAAAACTGCAATTCACACAC 57.970 29.630 0.00 0.00 0.00 3.82
1556 1749 4.495679 CGACTGAAAAAGTGCAAGCTTACA 60.496 41.667 0.00 0.00 40.07 2.41
1561 1754 1.065551 ACCGACTGAAAAAGTGCAAGC 59.934 47.619 0.00 0.00 40.07 4.01
1564 1757 5.302360 ACTATAACCGACTGAAAAAGTGCA 58.698 37.500 0.00 0.00 40.07 4.57
1565 1758 5.857822 ACTATAACCGACTGAAAAAGTGC 57.142 39.130 0.00 0.00 40.07 4.40
1566 1759 9.070149 GTAGTACTATAACCGACTGAAAAAGTG 57.930 37.037 5.75 0.00 40.07 3.16
1567 1760 9.018582 AGTAGTACTATAACCGACTGAAAAAGT 57.981 33.333 5.75 0.00 43.85 2.66
1607 1800 8.284693 GCTCAACAAAATATGAAATTTGCACTT 58.715 29.630 0.00 0.00 39.55 3.16
1608 1801 7.658575 AGCTCAACAAAATATGAAATTTGCACT 59.341 29.630 0.00 0.00 39.55 4.40
1609 1802 7.742963 CAGCTCAACAAAATATGAAATTTGCAC 59.257 33.333 0.00 0.00 39.55 4.57
1610 1803 7.656542 TCAGCTCAACAAAATATGAAATTTGCA 59.343 29.630 0.00 0.00 39.55 4.08
1611 1804 8.020861 TCAGCTCAACAAAATATGAAATTTGC 57.979 30.769 0.00 0.00 39.55 3.68
1614 1807 9.768662 AACTTCAGCTCAACAAAATATGAAATT 57.231 25.926 0.00 0.00 0.00 1.82
1615 1808 9.768662 AAACTTCAGCTCAACAAAATATGAAAT 57.231 25.926 0.00 0.00 0.00 2.17
1617 1810 8.412456 TGAAACTTCAGCTCAACAAAATATGAA 58.588 29.630 0.00 0.00 32.50 2.57
1621 1814 9.598517 AAAATGAAACTTCAGCTCAACAAAATA 57.401 25.926 0.00 0.00 41.08 1.40
1622 1815 8.496707 AAAATGAAACTTCAGCTCAACAAAAT 57.503 26.923 0.00 0.00 41.08 1.82
1623 1816 7.903995 AAAATGAAACTTCAGCTCAACAAAA 57.096 28.000 0.00 0.00 41.08 2.44
1624 1817 7.601886 TGAAAAATGAAACTTCAGCTCAACAAA 59.398 29.630 0.00 0.00 41.08 2.83
1625 1818 7.095910 TGAAAAATGAAACTTCAGCTCAACAA 58.904 30.769 0.00 0.00 41.08 2.83
1627 1820 6.974622 TCTGAAAAATGAAACTTCAGCTCAAC 59.025 34.615 6.23 0.00 41.08 3.18
1628 1821 7.099266 TCTGAAAAATGAAACTTCAGCTCAA 57.901 32.000 6.23 0.00 41.08 3.02
1630 1823 7.864379 TGATTCTGAAAAATGAAACTTCAGCTC 59.136 33.333 6.23 6.41 41.08 4.09
1631 1824 7.719483 TGATTCTGAAAAATGAAACTTCAGCT 58.281 30.769 6.23 0.00 41.08 4.24
1632 1825 7.650903 ACTGATTCTGAAAAATGAAACTTCAGC 59.349 33.333 6.23 0.00 41.08 4.26
1633 1826 9.525409 AACTGATTCTGAAAAATGAAACTTCAG 57.475 29.630 4.96 4.96 41.08 3.02
1634 1827 9.304731 CAACTGATTCTGAAAAATGAAACTTCA 57.695 29.630 0.00 0.00 42.14 3.02
1635 1828 9.520204 TCAACTGATTCTGAAAAATGAAACTTC 57.480 29.630 0.00 0.00 0.00 3.01
1636 1829 9.525409 CTCAACTGATTCTGAAAAATGAAACTT 57.475 29.630 0.00 0.00 0.00 2.66
1637 1830 8.906867 TCTCAACTGATTCTGAAAAATGAAACT 58.093 29.630 0.00 0.00 0.00 2.66
1638 1831 8.962111 GTCTCAACTGATTCTGAAAAATGAAAC 58.038 33.333 0.00 0.00 0.00 2.78
1639 1832 8.906867 AGTCTCAACTGATTCTGAAAAATGAAA 58.093 29.630 0.00 0.00 33.32 2.69
1640 1833 8.455903 AGTCTCAACTGATTCTGAAAAATGAA 57.544 30.769 0.00 0.00 33.32 2.57
1641 1834 8.455903 AAGTCTCAACTGATTCTGAAAAATGA 57.544 30.769 0.00 0.00 35.36 2.57
1645 1838 9.613428 TTCTTAAGTCTCAACTGATTCTGAAAA 57.387 29.630 1.63 0.00 35.36 2.29
1669 1862 9.535270 CACTCGACTAAGATTTTCAGATTTTTC 57.465 33.333 0.00 0.00 0.00 2.29
1674 1867 7.254852 GTCTCACTCGACTAAGATTTTCAGAT 58.745 38.462 0.00 0.00 0.00 2.90
1675 1868 6.349445 GGTCTCACTCGACTAAGATTTTCAGA 60.349 42.308 0.00 0.00 34.38 3.27
1676 1869 5.802956 GGTCTCACTCGACTAAGATTTTCAG 59.197 44.000 0.00 0.00 34.38 3.02
1677 1870 5.477291 AGGTCTCACTCGACTAAGATTTTCA 59.523 40.000 0.00 0.00 34.38 2.69
1678 1871 5.956642 AGGTCTCACTCGACTAAGATTTTC 58.043 41.667 0.00 0.00 34.38 2.29
1693 1889 2.673368 CGATGGTTTTGCTAGGTCTCAC 59.327 50.000 0.00 0.00 0.00 3.51
1697 2019 1.739067 AGCGATGGTTTTGCTAGGTC 58.261 50.000 0.00 0.00 43.67 3.85
1713 2035 2.858344 CCGTCAGGTTCAGTATTTAGCG 59.142 50.000 0.00 0.00 0.00 4.26
1715 2037 8.765219 CATAATTCCGTCAGGTTCAGTATTTAG 58.235 37.037 0.00 0.00 39.05 1.85
1782 2104 2.352960 GGAAACTGCATTAGCGAAGAGG 59.647 50.000 0.00 0.00 46.23 3.69
1888 2211 6.932356 ATGTTGGTACTTTGCTGAGATATG 57.068 37.500 0.00 0.00 0.00 1.78
1959 5107 3.672511 CGGCAACAACGTCAGTAGAGTAT 60.673 47.826 0.00 0.00 0.00 2.12
1960 5108 2.351060 CGGCAACAACGTCAGTAGAGTA 60.351 50.000 0.00 0.00 0.00 2.59
1961 5109 1.602165 CGGCAACAACGTCAGTAGAGT 60.602 52.381 0.00 0.00 0.00 3.24
1962 5110 1.060713 CGGCAACAACGTCAGTAGAG 58.939 55.000 0.00 0.00 0.00 2.43
1963 5111 0.386476 ACGGCAACAACGTCAGTAGA 59.614 50.000 0.00 0.00 41.25 2.59
1964 5112 2.895039 ACGGCAACAACGTCAGTAG 58.105 52.632 0.00 0.00 41.25 2.57
2061 5211 2.747460 GCTGCGGCTGGTGATTCA 60.747 61.111 11.21 0.00 35.22 2.57
2138 5288 2.852075 AAGACGGGAAGGTGGCCA 60.852 61.111 0.00 0.00 0.00 5.36
2152 5302 0.251386 AGGAGGACGTCTGCTGAAGA 60.251 55.000 16.46 0.00 42.82 2.87
2189 5339 0.320683 CACGAGCAGGGTCATCACAA 60.321 55.000 0.00 0.00 0.00 3.33
2190 5340 1.293179 CACGAGCAGGGTCATCACA 59.707 57.895 0.00 0.00 0.00 3.58
2192 5342 1.184970 TCACACGAGCAGGGTCATCA 61.185 55.000 0.00 0.00 31.20 3.07
2193 5343 0.459237 CTCACACGAGCAGGGTCATC 60.459 60.000 0.00 0.00 31.20 2.92
2194 5344 1.593787 CTCACACGAGCAGGGTCAT 59.406 57.895 0.00 0.00 31.20 3.06
2195 5345 3.051210 CTCACACGAGCAGGGTCA 58.949 61.111 0.00 0.00 31.20 4.02
2247 5402 2.448926 AATGGTCACATGAACGACGA 57.551 45.000 0.00 0.69 37.40 4.20
2259 5417 2.828877 CGGGTATAGCGAAAATGGTCA 58.171 47.619 0.00 0.00 0.00 4.02
2268 5426 3.289834 GTCGGGCGGGTATAGCGA 61.290 66.667 0.00 0.00 35.00 4.93
2322 5482 1.066215 ACATCTCGGTACATGCAGCAA 60.066 47.619 0.00 0.00 0.00 3.91
2391 5578 8.417884 TCATTGTGTATGGAAACGAGTCATATA 58.582 33.333 0.00 0.00 34.85 0.86
2393 5580 6.635755 TCATTGTGTATGGAAACGAGTCATA 58.364 36.000 0.00 0.00 34.85 2.15
2413 5602 2.839486 TCGAACCAAGCAGTCTCATT 57.161 45.000 0.00 0.00 0.00 2.57
2456 5645 4.100808 AGCCAAATTTTTAGAGTGCCAACA 59.899 37.500 0.00 0.00 0.00 3.33
2457 5646 4.631131 AGCCAAATTTTTAGAGTGCCAAC 58.369 39.130 0.00 0.00 0.00 3.77
2458 5647 4.953940 AGCCAAATTTTTAGAGTGCCAA 57.046 36.364 0.00 0.00 0.00 4.52
2459 5648 4.219725 GGTAGCCAAATTTTTAGAGTGCCA 59.780 41.667 0.00 0.00 0.00 4.92
2460 5649 4.674362 CGGTAGCCAAATTTTTAGAGTGCC 60.674 45.833 0.00 0.00 0.00 5.01
2462 5651 5.873179 TCGGTAGCCAAATTTTTAGAGTG 57.127 39.130 0.00 0.00 0.00 3.51
2463 5652 7.462571 AATTCGGTAGCCAAATTTTTAGAGT 57.537 32.000 0.00 0.00 0.00 3.24
2464 5653 8.757164 AAAATTCGGTAGCCAAATTTTTAGAG 57.243 30.769 14.77 0.00 38.69 2.43
2466 5655 8.757164 AGAAAATTCGGTAGCCAAATTTTTAG 57.243 30.769 18.72 0.00 40.69 1.85
2468 5657 7.519809 GCAAGAAAATTCGGTAGCCAAATTTTT 60.520 33.333 18.72 5.51 40.69 1.94
2473 5673 3.305744 GGCAAGAAAATTCGGTAGCCAAA 60.306 43.478 12.78 0.00 40.50 3.28
2474 5674 2.230266 GGCAAGAAAATTCGGTAGCCAA 59.770 45.455 12.78 0.00 40.50 4.52
2477 5677 2.488153 ACTGGCAAGAAAATTCGGTAGC 59.512 45.455 0.00 0.00 0.00 3.58
2485 5685 7.001073 ACTTTTCTAGAGACTGGCAAGAAAAT 58.999 34.615 17.90 9.39 42.24 1.82
2497 5697 4.729227 AGCAGGCTACTTTTCTAGAGAC 57.271 45.455 0.00 0.00 0.00 3.36
2533 6152 1.654954 GCTTGGTCTGATGCCAGCAG 61.655 60.000 2.92 2.92 40.20 4.24
2545 6164 2.954611 GTTTCTGGCCGCTTGGTC 59.045 61.111 0.00 0.00 38.10 4.02
2553 6172 2.198304 ATCTCACCCCGTTTCTGGCC 62.198 60.000 0.00 0.00 0.00 5.36
2562 6181 1.276421 ACTTCTCACAATCTCACCCCG 59.724 52.381 0.00 0.00 0.00 5.73
2567 6186 3.552890 CCGTGACACTTCTCACAATCTCA 60.553 47.826 3.68 0.00 40.67 3.27
2576 6195 2.089349 GCTCGCCGTGACACTTCTC 61.089 63.158 3.68 0.00 0.00 2.87
2596 6215 3.126831 CCCGTATCTGTTCTGAATGAGC 58.873 50.000 0.00 0.00 0.00 4.26
2612 6231 2.351706 AACAGAGGCAAAAACCCGTA 57.648 45.000 0.00 0.00 0.00 4.02
2636 6255 6.370442 CCCGTTTCTGTTTTTCTTTCCTTTTT 59.630 34.615 0.00 0.00 0.00 1.94
2637 6256 5.872617 CCCGTTTCTGTTTTTCTTTCCTTTT 59.127 36.000 0.00 0.00 0.00 2.27
2638 6257 5.046878 ACCCGTTTCTGTTTTTCTTTCCTTT 60.047 36.000 0.00 0.00 0.00 3.11
2639 6258 4.464951 ACCCGTTTCTGTTTTTCTTTCCTT 59.535 37.500 0.00 0.00 0.00 3.36
2640 6259 4.021229 ACCCGTTTCTGTTTTTCTTTCCT 58.979 39.130 0.00 0.00 0.00 3.36
2641 6260 4.109766 CACCCGTTTCTGTTTTTCTTTCC 58.890 43.478 0.00 0.00 0.00 3.13
2643 6262 5.588240 GATCACCCGTTTCTGTTTTTCTTT 58.412 37.500 0.00 0.00 0.00 2.52
2644 6263 4.261031 CGATCACCCGTTTCTGTTTTTCTT 60.261 41.667 0.00 0.00 0.00 2.52
2645 6264 3.250040 CGATCACCCGTTTCTGTTTTTCT 59.750 43.478 0.00 0.00 0.00 2.52
2646 6265 3.551551 CGATCACCCGTTTCTGTTTTTC 58.448 45.455 0.00 0.00 0.00 2.29
2647 6266 2.292292 CCGATCACCCGTTTCTGTTTTT 59.708 45.455 0.00 0.00 0.00 1.94
2648 6267 1.877443 CCGATCACCCGTTTCTGTTTT 59.123 47.619 0.00 0.00 0.00 2.43
2649 6268 1.071071 TCCGATCACCCGTTTCTGTTT 59.929 47.619 0.00 0.00 0.00 2.83
2650 6269 0.682852 TCCGATCACCCGTTTCTGTT 59.317 50.000 0.00 0.00 0.00 3.16
2651 6270 0.902531 ATCCGATCACCCGTTTCTGT 59.097 50.000 0.00 0.00 0.00 3.41
2652 6271 2.470821 GTATCCGATCACCCGTTTCTG 58.529 52.381 0.00 0.00 0.00 3.02
2653 6272 1.066605 CGTATCCGATCACCCGTTTCT 59.933 52.381 0.00 0.00 35.63 2.52
2654 6273 1.484356 CGTATCCGATCACCCGTTTC 58.516 55.000 0.00 0.00 35.63 2.78
2655 6274 0.529119 GCGTATCCGATCACCCGTTT 60.529 55.000 0.00 0.00 35.63 3.60
2656 6275 1.066918 GCGTATCCGATCACCCGTT 59.933 57.895 0.00 0.00 35.63 4.44
2657 6276 1.826921 AGCGTATCCGATCACCCGT 60.827 57.895 0.00 0.00 35.63 5.28
2658 6277 3.039988 AGCGTATCCGATCACCCG 58.960 61.111 0.00 0.00 35.63 5.28
2664 6283 4.302455 CTCTGAAAATGAGCGTATCCGAT 58.698 43.478 0.00 0.00 35.63 4.18
2665 6284 3.490933 CCTCTGAAAATGAGCGTATCCGA 60.491 47.826 0.00 0.00 35.63 4.55
2666 6285 2.797156 CCTCTGAAAATGAGCGTATCCG 59.203 50.000 0.00 0.00 37.07 4.18
2667 6286 2.545946 GCCTCTGAAAATGAGCGTATCC 59.454 50.000 0.00 0.00 0.00 2.59
2668 6287 2.545946 GGCCTCTGAAAATGAGCGTATC 59.454 50.000 0.00 0.00 0.00 2.24
2669 6288 2.092968 TGGCCTCTGAAAATGAGCGTAT 60.093 45.455 3.32 0.00 0.00 3.06
2670 6289 1.277842 TGGCCTCTGAAAATGAGCGTA 59.722 47.619 3.32 0.00 0.00 4.42
2671 6290 0.036732 TGGCCTCTGAAAATGAGCGT 59.963 50.000 3.32 0.00 0.00 5.07
2672 6291 0.731417 CTGGCCTCTGAAAATGAGCG 59.269 55.000 3.32 0.00 0.00 5.03
2673 6292 2.119801 TCTGGCCTCTGAAAATGAGC 57.880 50.000 3.32 0.00 0.00 4.26
2674 6293 3.120060 CGTTTCTGGCCTCTGAAAATGAG 60.120 47.826 16.51 8.37 40.69 2.90
2675 6294 2.813754 CGTTTCTGGCCTCTGAAAATGA 59.186 45.455 16.51 0.00 40.69 2.57
2676 6295 2.813754 TCGTTTCTGGCCTCTGAAAATG 59.186 45.455 16.51 13.25 40.69 2.32
2677 6296 3.077359 CTCGTTTCTGGCCTCTGAAAAT 58.923 45.455 16.51 0.00 40.69 1.82
2678 6297 2.494059 CTCGTTTCTGGCCTCTGAAAA 58.506 47.619 16.51 3.49 40.69 2.29
2679 6298 1.270839 CCTCGTTTCTGGCCTCTGAAA 60.271 52.381 3.32 9.54 38.11 2.69
2680 6299 0.321671 CCTCGTTTCTGGCCTCTGAA 59.678 55.000 3.32 3.12 0.00 3.02
2681 6300 1.544825 CCCTCGTTTCTGGCCTCTGA 61.545 60.000 3.32 0.00 0.00 3.27
2682 6301 1.078848 CCCTCGTTTCTGGCCTCTG 60.079 63.158 3.32 0.00 0.00 3.35
2683 6302 1.536662 ACCCTCGTTTCTGGCCTCT 60.537 57.895 3.32 0.00 0.00 3.69
2697 6316 5.940470 GTGACACTTATCAAAATCTCACCCT 59.060 40.000 0.00 0.00 0.00 4.34
2708 6327 1.798223 GCACGCTGTGACACTTATCAA 59.202 47.619 7.20 0.00 35.23 2.57
2712 6331 0.673985 AGAGCACGCTGTGACACTTA 59.326 50.000 7.20 0.00 35.23 2.24
2729 6348 9.102757 GAGAGCACAATGAATACAAAGATTAGA 57.897 33.333 0.00 0.00 0.00 2.10
2730 6349 8.886719 TGAGAGCACAATGAATACAAAGATTAG 58.113 33.333 0.00 0.00 0.00 1.73
2731 6350 8.791327 TGAGAGCACAATGAATACAAAGATTA 57.209 30.769 0.00 0.00 0.00 1.75
2732 6351 7.692460 TGAGAGCACAATGAATACAAAGATT 57.308 32.000 0.00 0.00 0.00 2.40
2733 6352 7.876936 ATGAGAGCACAATGAATACAAAGAT 57.123 32.000 0.00 0.00 0.00 2.40
2734 6353 7.391275 TGAATGAGAGCACAATGAATACAAAGA 59.609 33.333 0.00 0.00 0.00 2.52
2735 6354 7.532571 TGAATGAGAGCACAATGAATACAAAG 58.467 34.615 0.00 0.00 0.00 2.77
2736 6355 7.391275 TCTGAATGAGAGCACAATGAATACAAA 59.609 33.333 0.00 0.00 0.00 2.83
2737 6356 6.880529 TCTGAATGAGAGCACAATGAATACAA 59.119 34.615 0.00 0.00 0.00 2.41
2738 6357 6.408869 TCTGAATGAGAGCACAATGAATACA 58.591 36.000 0.00 0.00 0.00 2.29
2739 6358 6.915544 TCTGAATGAGAGCACAATGAATAC 57.084 37.500 0.00 0.00 0.00 1.89
2740 6359 7.333323 TCTTCTGAATGAGAGCACAATGAATA 58.667 34.615 0.00 0.00 30.18 1.75
2741 6360 6.178324 TCTTCTGAATGAGAGCACAATGAAT 58.822 36.000 0.00 0.00 30.18 2.57
2742 6361 5.554070 TCTTCTGAATGAGAGCACAATGAA 58.446 37.500 0.00 0.00 30.18 2.57
2743 6362 5.046807 TCTCTTCTGAATGAGAGCACAATGA 60.047 40.000 12.49 0.00 34.77 2.57
2744 6363 5.176592 TCTCTTCTGAATGAGAGCACAATG 58.823 41.667 12.49 0.00 34.77 2.82
2745 6364 5.417754 TCTCTTCTGAATGAGAGCACAAT 57.582 39.130 12.49 0.00 34.77 2.71
2746 6365 4.818642 CTCTCTTCTGAATGAGAGCACAA 58.181 43.478 22.23 1.23 46.22 3.33
2747 6366 4.453177 CTCTCTTCTGAATGAGAGCACA 57.547 45.455 22.23 5.29 46.22 4.57
2752 6371 9.288576 GATATCTTCTCTCTCTTCTGAATGAGA 57.711 37.037 16.77 16.77 37.69 3.27
2809 6433 9.049523 TGACATGATAGCTTAAGCAAAGAATAG 57.950 33.333 28.39 13.28 45.16 1.73
2810 6434 8.962884 TGACATGATAGCTTAAGCAAAGAATA 57.037 30.769 28.39 11.81 45.16 1.75
2829 6453 4.565028 CCATCTCCCCATCTACATGACATG 60.565 50.000 14.02 14.02 30.57 3.21
2830 6454 3.586174 CCATCTCCCCATCTACATGACAT 59.414 47.826 0.00 0.00 30.57 3.06
2835 6459 1.701847 GTGCCATCTCCCCATCTACAT 59.298 52.381 0.00 0.00 0.00 2.29
2845 6469 1.617947 AACTCGGAGGTGCCATCTCC 61.618 60.000 14.38 14.38 45.46 3.71
2846 6470 0.250513 AAACTCGGAGGTGCCATCTC 59.749 55.000 10.23 0.00 35.94 2.75
2847 6471 0.250513 GAAACTCGGAGGTGCCATCT 59.749 55.000 10.23 0.00 35.94 2.90
2849 6473 1.079127 CGAAACTCGGAGGTGCCAT 60.079 57.895 10.23 0.00 36.00 4.40
2850 6474 2.342279 CGAAACTCGGAGGTGCCA 59.658 61.111 10.23 0.00 36.00 4.92
2851 6475 3.119096 GCGAAACTCGGAGGTGCC 61.119 66.667 10.23 0.00 40.84 5.01
2852 6476 2.357034 TGCGAAACTCGGAGGTGC 60.357 61.111 10.23 0.00 40.84 5.01
2853 6477 0.670546 ATGTGCGAAACTCGGAGGTG 60.671 55.000 10.23 0.00 41.84 4.00
2854 6478 0.389948 GATGTGCGAAACTCGGAGGT 60.390 55.000 10.23 0.00 41.84 3.85
2858 6482 1.361668 CCAGGATGTGCGAAACTCGG 61.362 60.000 0.00 0.00 40.84 4.63
2859 6483 0.389817 TCCAGGATGTGCGAAACTCG 60.390 55.000 0.00 0.00 43.89 4.18
2860 6484 2.029838 ATCCAGGATGTGCGAAACTC 57.970 50.000 0.00 0.00 0.00 3.01
2861 6485 3.134623 TCATATCCAGGATGTGCGAAACT 59.865 43.478 19.23 0.00 32.47 2.66
2862 6486 3.466836 TCATATCCAGGATGTGCGAAAC 58.533 45.455 19.23 0.00 32.47 2.78
2863 6487 3.836365 TCATATCCAGGATGTGCGAAA 57.164 42.857 19.23 1.73 32.47 3.46
2867 6491 5.416639 TGCATTAATCATATCCAGGATGTGC 59.583 40.000 19.23 8.10 32.47 4.57
2875 6499 6.250711 AGCTTCCATGCATTAATCATATCCA 58.749 36.000 0.00 0.00 34.99 3.41
2902 6527 2.494870 AGCTGAAGAATGACCCAATTGC 59.505 45.455 0.00 0.00 0.00 3.56
2903 6528 3.760151 TGAGCTGAAGAATGACCCAATTG 59.240 43.478 0.00 0.00 0.00 2.32
3171 6832 0.955428 TTGTGCAGGAGATTGCCGAC 60.955 55.000 0.00 0.00 43.43 4.79
3174 6835 1.251251 AACTTGTGCAGGAGATTGCC 58.749 50.000 3.41 0.00 43.43 4.52
3177 6838 3.689347 TGCATAACTTGTGCAGGAGATT 58.311 40.909 8.98 0.00 46.76 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.