>input_sequence_57428
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-----------------------------------ATGGCAGCTAGGA------------------------CGTCGCTG
CTGCTTCTACTCGCGCTGGCCGCGGTGGTGGCTCACGTCGACGGTGCGACCGTGGCCGCGCCGGCGCCGGCCGTGGACTG
CAGCGACGCCCTGATCAGCCTGGCGGGGTGCCTGAGCTACGTGCAGGAGGGGAGCACGGTGGCGATGCCGGAGGCGACCT
GCTGCTCCGGGCTCAAGGACGTGGTGAAGAAGGAGGTGGCCTGCCTCTGCCAGGCCTTCCAGGGCGGCCAGGACTATGGC
GTCACCCTCAACATGACCAAGGCCCTGCAGCTGCCCGGCGCCTGCAAGGTCAAGACGCCTCCCTTCAGCAAGTGCCACAG
TAAGTGTTCTTTTTTCTTCTTCGTG----TTTTTCCATCACTCGCAAATGCAAAAAAACGACGCCTATCAATAGCTGACT
GAAGACGGAAAGTTCATATATCGGGTTGAGCGATAGTCACTCCCA-----------------------------------
------------------------------------------------TTTTTCTCTTACAATTTCTGTGAAACAATTGC
TGCCGTAGTTGTTGTTGGGTCTGTGCGTGTGTGAATTGC------AGTTTTAATTTAGTGATGAAAAGTGTAAGCTTGCA
CTTTTTCAGTCGGTTATAGTACTACTACTTTTTCTAGAAAAGTGCAAATTTCATATTTTGTTGAGCTGAAGTTTCATTTT
TCAGAATCAGTTGAGACTTAAGAAAAATCTG---AAAATCTTAGTCGAG-------------------------------
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---------------TGAGACCTAGCAAAACCATCGCTAAATACTGAACCTGACGGAATTATGAACTGAGAAAAAACTGA
CGGAACTATATTCTGACGATCTCCCTCTTCGCTAATGCAGTTTCCATTCCGGGCGTGACCGGTGGGTCTCCAGGTGTGTT
CACTAACCACTCTTTCTCTTCCC-TTCTGATTCCGCATATATCATTCGACCATATCTCAGC-------------------
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--------------------------------------------------AAAG--------------------------
---------TACCAACATATGTAATCCTTTCTTTTTTTGGAGT-AAAAAAAATCGCAACTCTTTTAATACTCTACTGACG
TT--GTTGCCGTCATTCCAGCACCTGCACCTGCCCCGTCTTCCGGTGCTCCGTTCTTCGGGGGCTCGCCGTCACCATCCA
CGCCTTCGGCTGAATCACCAGCCGCAGCCGGAACCGGAAGCGGCGACTCCACCACCGCTCGAGCTCCATCGCCGTCGGCC
TCCGCCGTGGCCACCTTCCCGTCTTCAGCAGACGTCCTCCTAGCCGCAGCGACTGTCGTTGTGATGACCCTGCTCGTGTG
A-------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr4A_1_TraesCS4A01G038400
GTGAGATTCGTGCAAATTTTCTTTTCAGTTTTTTTTCTTTTTTTCTCTTGAATGTTATGTCACTTGACTGAGACTTTGCT
AAATCTCAGCCGACTAAGACCTAGCCACACCCAATCGCATACCACAGCTTGCAGTCGATCGAACATGTTAGCGGCTAGCG
CTGTTGCTTGGACATGACGTGAGCAATTCGACGCGGCGACATAAGCAGCCATTAGGCCATAGAGTACATCGTGGCATTGC
ATTCAGACCTAGAAAAAGGAGGTTTGGTGTTCATACCGGCGTTGGTAATAACATTGCTCGGT----------CCCAGCTC
CCGGAAAGCCTCGATTCCACT-CCCCCGTGCCATCGTGCGCTCGGTTTCTTTTATTTTCTCCCGTGCAACCGCCCACCCA
GCTACCTATAAGGCTTTCCCT-------------------------------------AGAAAAAAGCTATCCTAAAGGC
TCCCGGCCCTTTGATCATGGTCACCGGCCGACCACGG-------CGACG----GCGGCGACCTTCTTTTGGCTCACCCCC
ACAGCCACAGGCCACTGCCACCATTCGAACTTCATCATGTCGGCACACCGCCGCTTCGGAAAAGGAATGCCATGCCAAGC
CGCCCTTTTCA---------CTAGTGGCTGGGACCAGAAGGGCGCATCAACACACCGATCCCAGGCCTACAGACCCCATG
ATTTCCCAAGCACTTCGCAG-C-GTGCGCAGATGTCAGTGTCTCGGTGGGAGAATCGCTGCTCTATATGCCGCCATTTTC
TTTGACCTAGGATGAG-----GAGGAGCAATGAGTTCCATTTCTGTCTCTTGCCAGTGCCACTGCCAGCACAGTGCAACA
CTAACCAAACTTCCCACTGATGCAGTGGTGCATGCGGCGCTGGCAGCCCGTCGCAAACATAAAAACGCCCTCCACGCACC
CCACCCCCTAGCAATCTCACACCGCATTCCACGGACCATATCACACGCTCTGAAACCACTGTTGTAGATAGCTCTGGTGC
AGCGTGCACACAAGTTACAGCGGCAGCCGGCGAGAATGGCAGCTAGGA------------------------CGTCGCTG
CTGCTTCTACTCGCGCTGGCCGCGGTGGTGGCTCACGTCGACGGTGCGACCGTGGCCGCGCCGGCGCCGGCCGTGGACTG
CAGCGACGCCCTGATCAGCCTGGCGGGGTGCCTGAGCTACGTGCAGGAGGGGAGCACGGTGGCGATGCCGGAGGCGACCT
GCTGCTCCGGGCTCAAGGACGTGGTGAAGAAGGAGGTGGCCTGCCTCTGCCAGGCCTTCCAGGGCGGCCAGGACTATGGC
GTCACCCTCAACATGACCAAGGCCCTGCAGCTGCCCGGCGCCTGCAAGGTCAAGACGCCTCCCTTCAGCAAGTGCCACAG
TAAGTGTTCTTTTTTCTTCTTCGTG----TTTTTCCATCACTCGCAAATGCAAAAAAACGACGCCTATCAATAGCTGACT
GAAGACGGAAAGTTCATATATCGGGTTGAGCGATAGTCACTCCCA-----------------------------------
------------------------------------------------TTTTTCTCTTACAATTTCTGTGAAACAATTGC
TGCCGTAGTTGTTGTTGGGTCTGTGCGTGTGTGAATTGC------AGTTTTAATTTAGTGATGAAAAGTGTAAGCTTGCA
CTTTTTCAGTCGGTTATAGTACTACTACTTTTTCTAGAAAAGTGCAAATTTCATATTTTGTTGAGCTGAAGTTTCATTTT
TCAGAATCAGTTGAGACTTAAGAAAAATCTG---AAAATCTTAGTCGAG-------------------------------
--------------------------------------------------------------------------------
---------------TGAGACCTAGCAAAACCATCGCTAAATACTGAACCTGACGGAATTATGAACTGAGAAAAAACTGA
CGGAACTATATTCTGACGATCTCCCTCTTCGCTAATGCAGTTTCCATTCCGGGCGTGACCGGTGGGTCTCCAGGTGTGTT
CACTAACCACTCTTTCTCTTCCC-TTCTGATTCCGCATATATCATTCGACCATATCTCAGC-------------------
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--------------------------------------------------AAAG--------------------------
---------TACCAACATATGTAATCCTTTCTTTTTTTGGAGT-AAAAAAAATCGCAACTCTTTTAATACTCTACTGACG
TT--GTTGCCGTCATTCCAGCACCTGCACCTGCCCCGTCTTCCGGTGCTCCGTTCTTCGGGGGCTCGCCGTCACCATCCA
CGCCTTCGGCTGAATCACCAGCCGCAGCCGGAACCGGAAGCGGCGACTCCACCACCGCTCGAGCTCCATCGCCGTCGGCC
TCCGCCGTGGCCACCTTCCCGTCTTCAGCAGACGTCCTCCTAGCCGCAGCGACTGTCGTTGTGATGACCCTGCTCGTGTG
AGCAGCTG-----GGCGCGCCTGTAATTCAGCAAACCTGTTTCGTC---GTTCATGTGACCATTTTCGCTATACCCGCCC
GACACAGCTGAGAAAGC--AGACCCAGCCTTGTTGCTGGCTTTGCTGCATGTACCGAGATGTATCTTATCTGAGAGTTTC
CATTCCA--TTTATACAGATGTCACA--T-----------------------TCATATATATGACTCG--TTTCCATACA
CAATGAGACTGCTTGGTTCGATGCCAATTTTTGGCATGCCAACGTGTTGGCACTCTA-----------AAAATTTGGCTA
CCGAATTTTCTTGCCAGTCTCTAGAAA-----------------------------------------------------
-----------------------------AG-------------------------------------------------
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------------------------------------------------TAGCCTGCTTTTGGTTTTGCCAACTGCTGGCA
TCAGACCAAGCGGCCAGAAACGGGGTGAGATTGTGAGAAGTGTCACGGCGAGCAGCTCATTCAGAACAGATACGGGTTTT
TGCCTCTGTTTAAAAAAAAGGAAAGAAAAACAGAAACGGGTGATCGGATACGCTCATTTTCAGAGGCCAGAAACGAGGGT
GAGATTTTGATAAGTGTCACAGCGTGCTCTAATCTTTGTATTCATTGTGCTCTCATTCAGAAGAGAGAGAAG-----ATA
TCTTTTTTGTTTATATTCTAGCTTAGCTCTCTCTATTCTTTGCTTAAGCTATCATGTCATGTAGATGGGGAGATGGCACC
TCCGAGTTTCGCACATCCTGGATAT-GATTAATGCATGGAAGCTAAGCAATTGGGTCATTCTTCAGCT------------
------------------------CAAGATGCAAGCATTTGAACTCCACCCGAATACGGCTCGCAACTTGCTGCGGCCAT
GGCCATTAGATATAGAAATACAACTTATCAACAGTCTATAGTTCAGATTTCCGAACAATGGACACGACAACTGTTACATC
ATCCAACTTGCCCCCGGAGTAACCCAGGTACCCTTCTGCGAGCGCCGCATCCGAGAACGGGCTCCTCCCGGACCCGGACC
TGCCCACTTCCTTTGCTCTAGCAGCCAGGAGGTCGGCAATCTCCTGCACAAGTTATGCAAAATGAACATGTC
>chr4B_113
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--------------------------------AATCGCAAACCGCAACTTGCAGACGATCGAACATGTTATCGGCTAGCG
CCGTTGCTTGGACATGACGCGAGCAATTCGACGCGGCGACGTCAGCAGCCATTAGCCCATACATCG-ATCATGGCATTGC
ATTCAGACCTAGAAAAAGGAGGTTTGATGTTCATACCGGCGTTGGTAATA---TTGCTCGGTCGACGTGTGCCCCAGCCC
TCGGAAAGTCTCGATTCCACT-CCCCCGCGCCGTCGTGCGCTCGGTTTCTTTTATTTTCTGCCGTGCAACCGCCCACCCA
GCTACCC--AAGAAAAAAGTTATCCCAAGGCTTCCGGCCCTTTTCCCTCGCAAAAAAAAAAA---------------GGC
TTCCGGCCCTTTTATCATGGTCACCGGCCGACCACGG-------CGACGGCTCGCGGTGACCTTCTTTTGGCTCACCCGC
ACAGA------CCACTGCCACCA-TCGAACTTCATCATGTCGGCACACCGCCGCTTCGGAAAAGGAATGCCATGCCGAAG
CCGCCCTTTCA---------CTAGTGGCTGGGACCAGAAGGGCGCATCAACACACCGATCCTATGCCTACAGACGCCATG
ATTTCTCAAGCATTTCGCAGCC-GTGCGCAGATGTCAGTGTCTCGGTGAGAGAATCGCTGCT--GTATGCCGCCATTTTC
TTTGACCTGTAAAGCTAGGATGAGGAGCAATGAGTTCCATTTCTGTCTCTTGCCAGTGCCCGTGCCAGCACAGTGTAACA
CTAACCAAACTTCCCACTGATGCAGTGGTGCATGTGGTGCTGGCAGCCCATCGCAAACATAAAAACGCCCTCCCCGCACC
CC-----CTAGCAATCTCACACCACATTCCACAGACCATATCACACGTTCTGAAACTACTATTGTAGATAGCTCTAGTGC
AGCGTGCACACAAGTTACAGCGGCAGCCGGCGAGAATGGCAGCTAGG---TCGATGGCGGACACGGCACGGCCATGGCTG
CTGCTTCTTGCAGCACTAGCCACGGTGGTAGCACACGTCGACAGTGCGACCGTGGCCGCGCCAGCGCCGGCCGTGGACTG
TAGCGACGCCCTGATCAGCCTGGCGGGGTGCCTGAGCTACGTGCAGGAGGGGAGCACGGTGGCGACGCCCGAGAAGTCGT
GTTGCTCGGGCCTCAAGGACGTGGTGAAGAAGGAGGTGGCCTGCCTGTGCCAGGCCTTCCAGGGTGGCCAGGACTACGGC
GTCACCCTCAACATGACCAAGGCCCTGCAGCTGCCCGGCGCCTGCAAGGTCAAG-CGCCTCCATTCAGCAAGTGCCACAG
TAAGTGTTCTTTTTTCTTCTTCGTG----TTTTTCCACCACTCGCAAATTCAAAAATACAACGCCTATCAATAGCTGACT
GAGAACGAAATGTTCTTATATCGGATTGAGCGATAGTCACTCCATTTTCTGGTCCATTTATGTGCGTCTTTGGTGGAGCA
GTCGTGTGCATAAACTGAAGTCAACTACCTTGGAGCATCGGTCATGTTTCCTTGTCTTGCAATTTTTTTGAAACAGT---
-----TAGTTGTTGTCGGGTCCGTGTATGTGCAAATTGC------AATTTTAATTTAGTGACGAAAAGAGTAATCTGCAC
--TTCTCAGTCGGTTATAGTACACTATCTTTCAGAATCAGTTGAGAGTTCTCAGTCGGTTATAGTACACT-----ATCTT
TCAGAATCAGTTGAGAGTTGACAAAATCTGAAGTAAAATCTTAGTCGAT-------------------------------
--------------------------------------------------------------------------------
---------------TGACACCTAGCAAAACCATTGTTAAATACTGAACCTGACGGAATTATGAACTGGGAAAAAACTGA
GGGAACTATATTCTGACGATCTCTCTCTTCGCTAATGCAGTTTCCATTCCGGGCGTGACCGGAGGGTCTCCAGGTGTGTT
CACTAACCACTCTTCTCTTCATAACTAAGGGCATGATGGTCATATATTAGAAATCATTTATCCGCTGTATACGATGTACA
GTGAGCTGGGCCGGCCCATCTTTCCCTTCTCTTTTAATGATTTTAAATCCGAAAAAAATGCGAGCCTAAGAGGAATCGAA
CCACGTACTTCCTGGTACATAGTTGGACATTATAACCATCAAGCCGACTTCAGCACTTGTGTTTAAACTGTTCTTTCTCG
TCGTTTTCTTCTTTCCTCTTTCCTCTTTCTTATTTTCCTTTTTCTTGTTTTTTCAATCGTTTTTTTGGGTTTTCATTTCC
CTTTTTTTCGTTTTCTTTTCCTTTTTATGTTCCTTTTTGTTTTACTTTTTCTTTTGCAATATGCAACCTTTTTCAGTTTC
CTTTAGAAAAAATCAATGAACCTTTTTTTAATATTGATGATTTTTAAAGTCGATCAACTTTATTCAAGATTGATTAAAAA
ATTCTAAATTGATGAATCTTTCTCAAGATGAATGATTTTTTTTCAAACTAGATGGTTTTTTTTTAAATCAATGGACTTTG
TTCAAAATTGATAAACTTTTTGCAAAACTGATGATTTTTTTAAAAAAAATCATGAACTTTTTTTATCAAAATGCATGGTT
TTTTTAATTCATGGTACTTCTAATTTATGAACATTTTGCAAATCCGCTTATTTTTTCAAGTCCATGAACTTTTCCAAAAA
GACGAACCCTTTTTTTATAGTTAATGGTCAAAGGTCAAACATGTCAATGGTCAACTTTTCGTCCAGGTCAACCATGATGA
AGTTTTCTTTTGGTCGAATCACGAAGAAGCGATCGAACGACAGTTGATCGCTCGTGTAGTTTGGCTGGTCCATGAAAGGT
GGTGTTCAAGCGCTGCGTCCATTAAGTAGCAATGTGCTCTCAACCAGAGCCTTCTGGCAACTGTCTAGCTTTTGGACATT
TTTGAAATGACCCCAACTTTTTGAAGTAGGTGAGCATGCCGATGGTAGACATCCATGTCAAGTTTGAATGATTTCTGACA
CCGTATGCAAGTCGCGACACGTCTGACCATTTATCGACCTTTTTTGGCTGAGGAAACTCCAGAAAATGCAAAATTCATCA
AAAAACAAAATAACTTGGCATTGTGCATTTAGTTGGCCATACAAGGTCATATAAAAAACTGGGGCCATTTTATGGATGTC
GAAACACAACATGCTCTCAGGCGTAGCTTTCTGACCTACCTGAACACCCTCATTTAAACATGGTCTGTTTTTATATATCC
TTCAAATGACCATGACTTTTCCAAGAAGGTGAGCATGCACATGGTAGGGATCTATGTCAGGTTTGAACTATTTTCGACAA
TGTATGCAAGTTGCAACATGCCTGGGCATTTATTTTCCCCCTTTTACCGAGAAAACTCTAGAAATGCAAAATTTATTGAA
AACCAAAACAACTTGGCATGGTGCCTTGAATTGGTCATACAAGGCCATGGGAAAAATTGGGGCCATTTCAAGGATGTCGA
GAAACAACGTGCTCTCAGACGGAGCCTTCTAACGTACCCGGACACCCAACATTGAACATGGTCTATTTTTGGATACGCTT
GCAATGACCCATTTTTTGCAAGCAGGCGGGCATACCCCTGGTAGGAATCAATGCCAAGTTTTGAACGATTTTCGAAACCG
TATGCAAGTTGCGACACGTTCGGCAATTTATCGCCCTTTTTTGAAAAAGAAAACTCCAGAAAATGTAAAATTTGAAGAAA
ACCAAAAAACCTTGGGATGGTGCCTTGAATTGTTCATGCAAGCTAGTGAAAAAAATTAGGTCATTTGACAGATCTCGAGG
AAAAACATGCTCCCAAAAGGAGCCTTCTGACCTACCCCGACACCCTACGTTGAACATGGTGATTTCTCCTACACGAATAC
AAAAAAAATGTTCGAGCAAATTAAAAAAAAACTGTTTCAAATTTTTATTCGTATTTTTCTTGAAATTCAAAACTTAATAG
TGATTTTCATAAAATATTAAAAGAAAAATATTCGTCTTCAAAGTTTTGTTTGCTCCTTGTAAAAATGTTGTGTTTTGACA
TTATGAGCAATTTGAAAATACAAAAACGTTCCGAGGAATTCATAAAATGTTTGCATTTTGAAATAATTGTTCATAGTTTC
AGAAAATGTCCGTGTTTTCAGTTTTGTTCTTGTTTTAAGAAAATGTTCGTATTTAAAAAAAATTGTTTCTAGTTTCAATA
AATGTTCTCGTTTTCAATTCTGCTCTTATTTTTCCAAAACAAAGTTTGAGAGTCTGAAACATTGTTCACAAAAGGTTTGA
GTTTTAGAAAATATGTTCACAGATTTTGAAAATGATTGGGTTTAAAAAATATTACTTTGTCAAACAGAAATTCACATACG
AAATTTCAAAAAAAAAATCGTTTTGGGCTAGTGATGTTATGCACTCGCGGGATCTTGTGTGTTAGATCCACGCACCCATT
TTAGTATTTGTGAATTGGTGTCAAAGTGTTGCCCCTTTCTCCAATTCTTTAAGCGGTGCACTGCTAATCGGCCACTTGAG
TTAGGCAGCCGAAGTGGCTAGCATCGGTATGAATTATATCCCAGGTTGTTAGTTCGATACCAATGTACGGATTAATTTTT
GTTGATTTTCCAGCGCAAATGAGCCGGCCCAGGTTAGCTGTGCCTGTGCCGTATTCCAGCGTCCAGCGTAGAGGTGGTCT
TCCGAACGTATGGCATATTCTATCCTATGTATGAAAGTGGATACTATTTGCCAAAGGTCTAAATTATCCTTTATACGTTT
TGTGAGGGGGTGTACCGAAGCGTTCCTCTTATTTATTTATTTTTGCGAATAAAG--------------------------
---------TACCAACATATATAATCCTTTCTTTTTTGGAGT---AAAAAAATCGCAGCTCTTTAAG-----TACTGACG
TT--GTTGCCGTCATTCCAGCACCTGCACCTGCCCCGTCTTCCGGTGCTCCGTTCTTCGGGGACTCGCCGTCACCATCCA
CGCCGTCGGCGGAATCACCAGCCGAAGCCGGAACCGGAAGTGGCGACTCCACCACCGCTCGAGCTCCATCGCCGTCGGCC
TCCGCTTCGACCACCTTCCCCGCTTCAGCAAGTGTCCTCCTAGCCGCAGCGACTGTTGCCGC---GGCTCTGCTCATGTG
AGCAGCTGGGCGCGGCGCGCCTGTAATTCAGCAAACATGTAACATGTTTGTTCATGCGACCATTTCCGATATACTCGCTC
GACACAGCTGAGAAAGC--AAACCAAGCCTCGTTGCTGGCT-TGCTGCATGTACCGAGATGTATCTTATGTGAGAGTTTC
CATTCCATTTTTATACAGATGTCTCA--TATACACGTCTAAACGAGCGTCTTTCATAAACATGACTCG--TTTCCATACA
CGATGAGACTGCTTGGTTTGATGCCAG--------------------------TGTGTTGGCAACTCT------TAACTA
CAGATTTTTCGTACCAATCTCTAGAAATATATCGGAAGTACCATTCTACACCCAGGAGCAAATGCTCCTGGTGTGAATAG
TAAAATCAAAAAAATAAAAAAAAATTCAAAAAATTCTGAAATTTTTTTTGACATACTTTCGCAAGTGTTTCTTGTGCATG
GAAATTTTCATCATGAAATCACATTCGTGAAAGTCATGTCGAAAAAAACAAAACCAGAGCTTCAAAATGCTTTTGTAAGT
AACATTTTCAGAGCATCGATTTTGTTTTTTTTACCACACCTTCCACCAATGTGATTTCGCGATGAAATTTTACGTGCACA
ACAAACATTTGTATAAGTATGCCACAAAAAAATCAGAATTTTTTGACACTTTTCTGAATTTTTTTTATTTTACTGTTCAC
ACCGGGAGCATTTGCTCCTGGGTGTAGAAACTCCACTTCCGAAATATATAGCCTACTTTTGGTTTTGCCTAATATTGGCA
TCAAACCAAGCAGCCTCAGTACTGCCTTCCAAGTCGCACAAGCGCGCTTTCGTACCTCACTGTTGGTCAAATATTTTT--
--------------------------------------------------------------------------------
-----------------------------------------------------------------AGAAGAGCGTGAATA
TCTTTTTTGTTAGTATTCTAGCTTAGCTCTCT--ATTCTTTGCTTAAGCTATTGTGTCGTGTAGATAGATGGCATATCCC
TA-----TTCCCACATCCCCGGACACGATTAATGCATGGAAGCTAAAGAATTGGGTCATTCTTCAG--------------
---------------------GCCCAAGATGCAATCATTTGAACTCTATCCCAATATGGCTCGCAACTTGCTGCGGCCAT
GGCCATCAGATATAGAAATACAACTTATCAACAGTCTATAGTTCAGATTTCCGAACAATGGACACGACAACTGTTACATC
ATCCAACTTGCCCCCGGAATAGCCCAGGTATCCTTCTGCGAGCGCCGCGTCCGAGAACGGGCTCCTCCCGGACCCGGACC
TGCCCACCTCCTTCGCTCTCGCAGCCAGGAGCTCCGCGATCTCCTGCACAAGTCACGTGAAACGAATATGTC
>chr4D_153
--------------------------------------------------------------------------------
------------------------------------------------------------------------GGCTAGCG
CCGTTGCTTGGCCGTGACGTGAGCAATTCGACGCGGCGGCGTAAGCAGCCATTAGGCCATACATCGTGG------ATTGC
ATTCAGACCTAGAAAAAGGAGGTT-------CATACCGGCGTTGGTAACA---TTGCTCGGTCGACGTGTGGCCCAGCTC
TCGGAAAGTCTCGATTCCACTGCCCCCGTGCGGTCGTGCGCTCGGTTTCTTTTATTTTCTCCCGTGCAACCGCCCACCCA
GCTACCC--AAGGCTTTCCCT-------------------------------------AAAA---------------GGC
TTCCGGCCCTTTTATCATGGTCGCCGGCCGACCACGGCGACGGCCGACG----GCGGTGACCTTCTTTTGGCTCACCCCC
ACAGCCACAGGCCACTGCCACCATTCGAACTTCATCATGTCGGCACACCGCCGCTTCGGAAAAGGAATGACACGCCGAAG
CCGCCCTTTCACTAGCTTCTCTAGTGGCTGGGACCAGAAGGGCGCATCAATAGACCGATCCAAGGCCTACAGACGCCATG
ATTTCTCAAGCACTTCGCAG-CCGTGCGCAGACGTCACTGTCTCGGCCAGAGAATCGCTGCT--ATATGCCGCCATTTTC
TTTGACCTAGGATGAG-----GAGGAGCAATGAGTTCCATTTCTGTGTCTTGCCAGTGCCAGTGCCAGCACAGTGCAACA
CTAACCAAACTTCCCACTGATGCAGTGGTGCATGCGGTGCTGGCAGCCCATCGCAAACATAAAAACGCCCTCCACGCACC
CC-----CTAGCAATCTCACACCACATTCCACAGACCATATCACACGTTCTGAAACCACTGTTGTAGATAGCTCTAGTGC
ATCGTGCACACAAGTTACAGCGGCAGCCGGCGAGAATGGCAGCTAGGACGTCGATCACGGCCACGAAACGGCCATGGCTG
CTGCTTCTCGCAGCACTGGCCACGGTGGTAGCGCACGTCGACGGTGCGACTGTAGCCGCTCCGGCGCCGGCTGTTGACTG
CAGCGACGCCTTGATCAGCCTGGCGGGGTGCCTGAGCTACGTGCAGGAGGGGAGCACGGTGGCGACGCCGGAGGGGTCGT
GCTGCTCGGGGCTCAAGGACGTGGTGAAGAAGGAGGTGGCCTGCCTCTGCCAGGCCTTCCAGGGCGGCCAGGACTACGGC
GTCACCCTCAACATGACCAAGGCCCTGCAGCTGCCCGGCGCCTGCAAGGTCAAGACGCCTCCCTTCAGCAAGTGCCACAG
TGAGTAATTTTTTTTCTTCTTCTTCTTGTTTTTTCCACAGCTCGCAAATGCAAAAATACGACGCCTATCAATAGCTGACT
GAGAAAGAAATTCTCTTCTGTCGGATTAAGCCATAGTCACTCCATTTTCTGGTCCATTTATGTGCGTCTTTGGTGGAGAA
GTCGTGTGCATAAACTGAAGTCAACTACCTTGGAGCATCGGTCATGTTTTCTTGTCTTGCAAATTCTTTGAAACAGT---
-----TAGTTGTTGTTGGGTCCGTGTATGTGCAAATTGCAACTTTAATTTTAATTTAGTGACCAAAAGAGTAATCTGCAC
--TGTTCAGTCGGTTATAGTACTCTATCTTTCAGAATCA-----------------------------------------
-----------------------------GAAGTAAAATCTTAGTCGAATGACACCTTTTTTTTTTGCGGGGTTAAAAGG
GATTTTCATTGCTCAATGGGGAACCAGGTCGTCCATACAAAGTTGGGGTACATCCGTAGGGCCTGACCTCAACCAAACTA
ACATAATTAGTCGAATGACACCTAGCAAAACCATTGTTAAATACTGAACCTGACATAATTATGAACTGAGAAAAAACTGA
CGGAACCATATTCTGACGACCTCTCTCTTCGCTAATGCAGTTTCCATTCCGGGCGTGGCCGGTGGGTCTCCAGGTGTGTT
CACTAACCACTCTTTCTCTTCCCCTTCTGATTCCGCATATATCATTCGACGATATCTCAGC-------------------
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--------------------------------------------------AAAGTACCAACATATATTTATTTATTTTTG
CGAATAAAATACCAACATATATAATCCTTTCTTTTTTGGGAGTAAAAAAAAATCGCAACTCTTTTAG-----TACTCTAC
TGACGTTGCCATCATTCCAGCACCTGCACCTGCCCCGTCTTCCGGTGCTCCGTTCTTCGGGGGCTCGCCGTCACCATCCA
TGCCATCGGCGGAATCACCAGCCGAAGCCGGAACCGGAAGTGGCGACTCCACCACCGCTCGAGCTCCATCCCCGTCGGCC
TCCGCCGCGGCCACCTTCCCCGCTTCAGCAGACGTCCTCCTAGCCGCAGCGACTGTCGCCGC---GACACTGCTCATGTG
AGCAGCTGGAT-----GCGCCTGTAATTCAGCAAACCTGTT-CGTC---GTTCATGCGACCATTACCGCTGCACCCGCCC
GACACAGCTGAGAAAGCGCAGACCAAGCCTTGTTGCTGGCT-TGCTGCATGTACCGAGATGTATCTTATCTGAGAGTTTC
CATTCCATTTTTATACAGATATATTATTTATACACGTTTAAACGAGTGTCTTTCATAAACATGACTCATTTTTTCATGCA
TGGTGACACTGCTTGGTTTGATCCCAATATTTGGCACGCAAAAGCTCATGTGTTGTGTTGGCTACTCTAAAAACTGACTA
CCAATTTCTCTTGCCAACCTCTATAAAGCACACCCTATGTTCCCAAATATAAGACGTTTTTGGAGTTCAATTTAAACTGA
CAAAACGTCTTATATGTAGAAATGGAGGTAG-------------------------------------------------
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------------------------------------------------TAGCCAAAATTTGGTTTTGCCAAATGCTGGCA
TCAAACCAAGCAGCCAGAAATGGGGCGAGATTGTAAGAAGTGTCACGGCGAGCATCTCATTCAGAACAGAAACGGGGTGA
TTAGTATATGTCCATTTTCTG-----------------------------------------GAGGCCAGAAACG-GGGT
GAGATTGTGAGAAGTGTCACAGCGTGCAG----------------------CTCTCTCAGAACAGAGAGGAGCGTGAATA
TCCTTTTTGTTTATATTGTTGCTTGGTTCTCT--ATTCTTTGCTTAAGCTATTGTGTCGTGTAGATGGATGACATCTCCC
TG-----TTCACACATCCCGGATAT-GATTAATGCATGGAATCTAAAGAACTGGGTCATTCTTCAGCTCAAAATGCAGGC
ATGGAATTGGGTCATTCTTCAGCCCAAGATGCAGGCATTTGGACTCCATCCGAATATGGCTCGCAACTTGCTGCGGCCAT
GGCCATGAGATATAGAAATACAACTTATCAACAGTCTATAGTTCAGATTTCCGAACAATGGACACGACAACTGTTACATC
ATCCAACTTGCCCCCGGAGTAACCCAGGTAGCCTTCTGCGAGCGCCGCGTCCGAGAACGGGCTCCTCCCGGACCCGGACC
TGCCCACCTCCTTTGCTCTCGCAGCCAGGAGCTCCGCGATCTCCTGCACAAGTTACGTGAAACGAATATGTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---S--S-------S---------------S---------
-S--------------------------------------S--------------------S-SSSS---S---------
--------------------------S-----------------------SSS---------------------------
S-------S-----------------------S-----------------------------------------------
------SSS--------------------------------------------------S--SSSSSSSSSSSSSSS---
-S----------S--------------------------------------------S----------------------
----------------------------------------------------------------------------S-SS
-SS--S-------------------------------------------------------S------------S-----
-----S------------------------------------------S-------------SS----------------
-------------------------------------------------------------S------------------
-------------------------------------S-----------S------------------------------
--SSSSS----------------S--------S--------------S---------------------------S----
-------------------------------------------------------------------------S-S----
--------SSSS--S------S-------S--S-----------------------------------------------
-----------------------------------------------------------------S--------S-S-S-
-------S--------------------------------------------------------------------S---
--------------------------------------------------------------------------------
-------------------------------------S------------------S-----------------------
--SS---S--S----S--------S------------------SS-----------------------------------
--------------------------------------------------S--S----S--------S-------S-SSS
SSSSS----------------S---SS----SS-------------S--------------S------S----S--SSSS
SS---------------------SSSS----SSSS-SS-SSSSSS-SS-S---SSSSS-SS-SSSSSSSSSSSSS--S--
----------------S--S-S----SSSSS-----------------S-------------------------------
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------------------S---------------S-S-------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------S-----------------------------
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--------------------S----------------S----------------------------SSSSSS--------
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----S-----S-------------S---------------S---------------------------------------
-------S------------SS------------------------------------SS-SSSS---S------S----
-----------------------------------------S--------------S--------S--------------
------------------------S----------------S--------------------------------------
-----------------------S---------------------------------S-S--------------------
-S----------------S---------S-------S--S--S-SSSSS-SSS-S-S---------------SS--S---
----S-----------S---------------------------------------------------------------
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------------------------------------------------------S----------------S--------
---S-------S--------S----S--------S-------------------S---------------S-------SS
-SSS-S-S-S-SS-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----
------S---S----------------SSSSSSSSSSSSSSSSSSSSSSSS---SS------S------S----------
--------------------------------SS------------------SS----S---------SSS-SSSSSS--
-SSSSSS---S-------S---------------------------SS--------------------------------
------------------------------------------------S-------S-----------------------
------S-------------------------------------------------------------------------
------------------------------S-----------------S-------------------------------
-------S-----------S-----------S--S--S-----------------S-SS---S---S-----
>forward_107
--------------------------------------------------------------------------------
-------AGCCGACTAAGACCTAGCCA-----------------------------------------------------
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>reverse_1702
--------------------------------------------------------------------------------
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---------------------TGTGCGTGTGTGAATTGCAG---------------------------------------
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>forward_108
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--------GCCGACTAAGACCTAGCCAC----------------------------------------------------
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>reverse_5111
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----------------------------------------------------------------------TCTACTGACG
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>forward_1727
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---------------------------TGTGCGTGTGTGAATTGCAG---------------------------------
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>reverse_6290
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-------------------------------------------------ACGCTCATTTTCAGAGGCCA-----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
