Multiple sequence alignment - TraesCS4A01G021300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G021300 chr4A 100.000 3171 0 0 1 3171 14838139 14834969 0.000000e+00 5856.0
1 TraesCS4A01G021300 chr4A 100.000 286 0 0 3521 3806 14834619 14834334 2.600000e-146 529.0
2 TraesCS4A01G021300 chr4A 86.154 455 30 11 1977 2407 669396429 669396874 9.630000e-126 460.0
3 TraesCS4A01G021300 chr4A 84.490 245 24 12 1650 1888 669396165 669396401 2.960000e-56 230.0
4 TraesCS4A01G021300 chr4A 100.000 29 0 0 2774 2802 564892140 564892168 2.000000e-03 54.7
5 TraesCS4A01G021300 chr4B 89.681 2035 132 44 1 2008 565311989 565313972 0.000000e+00 2523.0
6 TraesCS4A01G021300 chr4B 84.695 1065 91 41 2005 3036 565314150 565315175 0.000000e+00 998.0
7 TraesCS4A01G021300 chr4B 93.333 45 3 0 1917 1961 184299749 184299705 2.450000e-07 67.6
8 TraesCS4A01G021300 chr4D 89.865 1184 63 27 727 1888 451801437 451802585 0.000000e+00 1469.0
9 TraesCS4A01G021300 chr4D 87.246 1231 63 29 1977 3163 451802613 451803793 0.000000e+00 1317.0
10 TraesCS4A01G021300 chr4D 88.393 672 59 14 1 665 451800758 451801417 0.000000e+00 791.0
11 TraesCS4A01G021300 chr4D 90.286 175 11 3 3626 3797 451831852 451832023 1.380000e-54 224.0
12 TraesCS4A01G021300 chr5B 86.623 456 29 9 1977 2408 244520134 244520581 3.440000e-130 475.0
13 TraesCS4A01G021300 chr5B 85.232 237 22 11 1650 1880 244519870 244520099 8.220000e-57 231.0
14 TraesCS4A01G021300 chr2B 85.934 455 32 10 1977 2407 474442207 474441761 1.250000e-124 457.0
15 TraesCS4A01G021300 chr2B 85.887 248 21 12 1650 1891 474442471 474442232 6.310000e-63 252.0
16 TraesCS4A01G021300 chr6B 87.931 58 7 0 1912 1969 713700302 713700245 6.820000e-08 69.4
17 TraesCS4A01G021300 chr6B 85.965 57 8 0 1912 1968 602828560 602828616 1.140000e-05 62.1
18 TraesCS4A01G021300 chr7A 85.965 57 8 0 1912 1968 574129349 574129405 1.140000e-05 62.1
19 TraesCS4A01G021300 chr7A 96.875 32 1 0 2872 2903 15534976 15534945 2.000000e-03 54.7
20 TraesCS4A01G021300 chr6D 85.965 57 8 0 1912 1968 122992166 122992110 1.140000e-05 62.1
21 TraesCS4A01G021300 chr6A 85.965 57 8 0 1912 1968 548408085 548408141 1.140000e-05 62.1
22 TraesCS4A01G021300 chr3D 86.207 58 6 2 1912 1968 326697015 326696959 1.140000e-05 62.1
23 TraesCS4A01G021300 chr1A 86.792 53 7 0 1916 1968 249435241 249435293 4.110000e-05 60.2
24 TraesCS4A01G021300 chr3B 92.308 39 3 0 2865 2903 341296121 341296083 5.310000e-04 56.5
25 TraesCS4A01G021300 chr7D 94.286 35 2 0 2865 2899 372908777 372908743 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G021300 chr4A 14834334 14838139 3805 True 3192.500000 5856 100.000000 1 3806 2 chr4A.!!$R1 3805
1 TraesCS4A01G021300 chr4A 669396165 669396874 709 False 345.000000 460 85.322000 1650 2407 2 chr4A.!!$F2 757
2 TraesCS4A01G021300 chr4B 565311989 565315175 3186 False 1760.500000 2523 87.188000 1 3036 2 chr4B.!!$F1 3035
3 TraesCS4A01G021300 chr4D 451800758 451803793 3035 False 1192.333333 1469 88.501333 1 3163 3 chr4D.!!$F2 3162
4 TraesCS4A01G021300 chr5B 244519870 244520581 711 False 353.000000 475 85.927500 1650 2408 2 chr5B.!!$F1 758
5 TraesCS4A01G021300 chr2B 474441761 474442471 710 True 354.500000 457 85.910500 1650 2407 2 chr2B.!!$R1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 861 0.172578 CGGGCACGTCAAGATGTCTA 59.827 55.0 0.00 0.00 34.81 2.59 F
1975 2068 0.036732 TGGATGAGAGGTTGCACCAC 59.963 55.0 7.86 2.16 41.95 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 2323 0.332632 ACAAGCACATGGGCTATGGT 59.667 50.0 25.68 18.81 45.07 3.55 R
3771 4110 0.027716 TAGAGCGAGCGAACTTAGCG 59.972 55.0 0.00 0.00 40.04 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.386731 CCGTTTGCCGAATTGGACAC 60.387 55.000 0.00 0.00 42.00 3.67
38 39 3.127533 GGACACGTGGCATCCTGC 61.128 66.667 25.47 0.00 44.08 4.85
53 54 2.481441 TCCTGCATCTATCCCAACACT 58.519 47.619 0.00 0.00 0.00 3.55
80 81 1.079819 ATCACGTCTCCTGTTGCCG 60.080 57.895 0.00 0.00 0.00 5.69
96 97 1.004277 TGCCGCTCCATTTTTCTAGGT 59.996 47.619 0.00 0.00 0.00 3.08
99 100 3.498777 GCCGCTCCATTTTTCTAGGTATC 59.501 47.826 0.00 0.00 0.00 2.24
131 132 6.974048 TGCTATGCATCAACATTGTTTATGTC 59.026 34.615 19.60 14.14 39.08 3.06
147 148 8.621532 TGTTTATGTCATCTTGCTCTTTAACT 57.378 30.769 0.00 0.00 0.00 2.24
193 195 3.592865 ACTGAAAAGGAGAGAGGGAAGT 58.407 45.455 0.00 0.00 0.00 3.01
271 295 3.282021 TGAGGCACAATAATTCCTCTGC 58.718 45.455 9.35 1.11 44.09 4.26
287 311 2.079020 CTGCTTGGTGTTGGTGGCAG 62.079 60.000 0.00 0.00 40.52 4.85
288 312 2.859981 GCTTGGTGTTGGTGGCAGG 61.860 63.158 0.00 0.00 0.00 4.85
289 313 2.837291 TTGGTGTTGGTGGCAGGC 60.837 61.111 0.00 0.00 0.00 4.85
290 314 3.668922 TTGGTGTTGGTGGCAGGCA 62.669 57.895 0.00 0.00 0.00 4.75
291 315 3.297620 GGTGTTGGTGGCAGGCAG 61.298 66.667 0.00 0.00 0.00 4.85
358 386 1.205893 GATTCAGAGTTCAGACGGGCT 59.794 52.381 0.00 0.00 0.00 5.19
425 453 0.323178 AGTTATTGGCTGCTGCTGCT 60.323 50.000 26.79 12.99 40.48 4.24
438 466 2.423446 CTGCTCCCATCTACCCGC 59.577 66.667 0.00 0.00 0.00 6.13
574 602 2.033662 GTCACAGTTCTCACGTTTCTGC 60.034 50.000 0.00 0.00 0.00 4.26
578 606 1.139058 AGTTCTCACGTTTCTGCCACT 59.861 47.619 0.00 0.00 0.00 4.00
616 644 4.090057 GAACACGGCAAGGCTCGC 62.090 66.667 0.00 0.00 0.00 5.03
667 695 1.373748 GCGTGTGAGCCCGTCTTTA 60.374 57.895 0.00 0.00 0.00 1.85
670 698 1.012486 GTGTGAGCCCGTCTTTACCG 61.012 60.000 0.00 0.00 0.00 4.02
681 709 2.222445 CGTCTTTACCGTTTTCCCACTG 59.778 50.000 0.00 0.00 0.00 3.66
683 711 1.950909 CTTTACCGTTTTCCCACTGCA 59.049 47.619 0.00 0.00 0.00 4.41
701 729 0.881118 CAACGCATGCAAACCCTAGT 59.119 50.000 19.57 1.22 0.00 2.57
710 738 1.407025 GCAAACCCTAGTAGGTGCTCC 60.407 57.143 18.56 0.00 40.05 4.70
796 830 1.798725 CTGCCCGTGTACGTACGTG 60.799 63.158 30.25 13.56 42.24 4.49
797 831 2.504681 GCCCGTGTACGTACGTGG 60.505 66.667 30.25 22.18 42.24 4.94
798 832 2.953821 CCCGTGTACGTACGTGGT 59.046 61.111 30.25 6.64 42.24 4.16
799 833 1.442520 CCCGTGTACGTACGTGGTG 60.443 63.158 30.25 16.29 42.24 4.17
800 834 2.082366 CCGTGTACGTACGTGGTGC 61.082 63.158 30.25 16.99 42.24 5.01
802 836 1.082169 GTGTACGTACGTGGTGCGA 60.082 57.895 30.25 6.69 43.77 5.10
803 837 0.454957 GTGTACGTACGTGGTGCGAT 60.455 55.000 30.25 3.43 43.77 4.58
804 838 0.454789 TGTACGTACGTGGTGCGATG 60.455 55.000 30.25 0.00 43.77 3.84
824 861 0.172578 CGGGCACGTCAAGATGTCTA 59.827 55.000 0.00 0.00 34.81 2.59
826 863 1.204941 GGGCACGTCAAGATGTCTAGT 59.795 52.381 0.00 0.00 0.00 2.57
909 947 2.930019 CCCACCCCAGCTCACTCA 60.930 66.667 0.00 0.00 0.00 3.41
910 948 2.348998 CCACCCCAGCTCACTCAC 59.651 66.667 0.00 0.00 0.00 3.51
911 949 2.219875 CCACCCCAGCTCACTCACT 61.220 63.158 0.00 0.00 0.00 3.41
912 950 1.294780 CACCCCAGCTCACTCACTC 59.705 63.158 0.00 0.00 0.00 3.51
913 951 1.152247 ACCCCAGCTCACTCACTCA 60.152 57.895 0.00 0.00 0.00 3.41
914 952 1.294780 CCCCAGCTCACTCACTCAC 59.705 63.158 0.00 0.00 0.00 3.51
915 953 1.190833 CCCCAGCTCACTCACTCACT 61.191 60.000 0.00 0.00 0.00 3.41
916 954 0.246086 CCCAGCTCACTCACTCACTC 59.754 60.000 0.00 0.00 0.00 3.51
917 955 0.964700 CCAGCTCACTCACTCACTCA 59.035 55.000 0.00 0.00 0.00 3.41
918 956 1.336702 CCAGCTCACTCACTCACTCAC 60.337 57.143 0.00 0.00 0.00 3.51
919 957 1.612950 CAGCTCACTCACTCACTCACT 59.387 52.381 0.00 0.00 0.00 3.41
920 958 1.885887 AGCTCACTCACTCACTCACTC 59.114 52.381 0.00 0.00 0.00 3.51
921 959 1.885887 GCTCACTCACTCACTCACTCT 59.114 52.381 0.00 0.00 0.00 3.24
953 991 5.233988 CACTTTACTTCCTCCACTCTTCAG 58.766 45.833 0.00 0.00 0.00 3.02
987 1025 0.392998 TGCTAGCCAAGTAGCCAAGC 60.393 55.000 13.29 0.00 44.23 4.01
991 1029 0.895559 AGCCAAGTAGCCAAGCCAAC 60.896 55.000 0.00 0.00 0.00 3.77
996 1034 0.685097 AGTAGCCAAGCCAACGAAGA 59.315 50.000 0.00 0.00 0.00 2.87
1031 1069 4.693532 CGTAGCAAGAAGGTGGCA 57.306 55.556 0.00 0.00 0.00 4.92
1032 1070 3.159298 CGTAGCAAGAAGGTGGCAT 57.841 52.632 0.00 0.00 0.00 4.40
1033 1071 1.009829 CGTAGCAAGAAGGTGGCATC 58.990 55.000 0.00 0.00 0.00 3.91
1034 1072 1.675714 CGTAGCAAGAAGGTGGCATCA 60.676 52.381 0.00 0.00 0.00 3.07
1035 1073 2.648059 GTAGCAAGAAGGTGGCATCAT 58.352 47.619 0.00 0.00 0.00 2.45
1376 1414 2.883828 AACGTCTCCCACTGCCCAG 61.884 63.158 0.00 0.00 0.00 4.45
1392 1430 0.752376 CCAGGTACGTCTCCCTCCTC 60.752 65.000 0.00 0.00 0.00 3.71
1394 1432 1.489649 CAGGTACGTCTCCCTCCTCTA 59.510 57.143 0.00 0.00 0.00 2.43
1395 1433 1.490069 AGGTACGTCTCCCTCCTCTAC 59.510 57.143 0.00 0.00 0.00 2.59
1396 1434 1.580815 GTACGTCTCCCTCCTCTACG 58.419 60.000 0.00 0.00 39.37 3.51
1397 1435 0.467384 TACGTCTCCCTCCTCTACGG 59.533 60.000 0.00 0.00 37.86 4.02
1398 1436 2.188161 CGTCTCCCTCCTCTACGGC 61.188 68.421 0.00 0.00 0.00 5.68
1399 1437 1.227946 GTCTCCCTCCTCTACGGCT 59.772 63.158 0.00 0.00 0.00 5.52
1400 1438 0.820482 GTCTCCCTCCTCTACGGCTC 60.820 65.000 0.00 0.00 0.00 4.70
1401 1439 0.989212 TCTCCCTCCTCTACGGCTCT 60.989 60.000 0.00 0.00 0.00 4.09
1402 1440 0.766131 CTCCCTCCTCTACGGCTCTA 59.234 60.000 0.00 0.00 0.00 2.43
1410 1448 2.550639 CCTCTACGGCTCTACCTACCTC 60.551 59.091 0.00 0.00 35.61 3.85
1413 1464 1.531128 CGGCTCTACCTACCTCCCC 60.531 68.421 0.00 0.00 35.61 4.81
1424 1475 2.026822 CCTACCTCCCCACATGCATATC 60.027 54.545 0.00 0.00 0.00 1.63
1425 1476 1.521764 ACCTCCCCACATGCATATCA 58.478 50.000 0.00 0.00 0.00 2.15
1426 1477 2.068181 ACCTCCCCACATGCATATCAT 58.932 47.619 0.00 0.00 35.31 2.45
1427 1478 3.259328 ACCTCCCCACATGCATATCATA 58.741 45.455 0.00 0.00 33.19 2.15
1428 1479 3.854389 ACCTCCCCACATGCATATCATAT 59.146 43.478 0.00 0.00 33.19 1.78
1535 1595 0.671251 GTCTCGTGCAGGCTAGCTAT 59.329 55.000 15.72 0.30 34.99 2.97
1543 1603 1.134551 GCAGGCTAGCTATAGATGCCC 60.135 57.143 20.66 12.22 44.19 5.36
1643 1703 7.450323 TCCCAAATTACTTCCCTTTCTTTACAG 59.550 37.037 0.00 0.00 0.00 2.74
1671 1731 4.892965 ACTGCAGGCGCCAACCAA 62.893 61.111 31.54 8.23 37.32 3.67
1672 1732 4.347453 CTGCAGGCGCCAACCAAC 62.347 66.667 31.54 11.26 37.32 3.77
1682 1742 1.677518 CGCCAACCAACCTATACAGCA 60.678 52.381 0.00 0.00 0.00 4.41
1733 1799 6.353582 CGTTTCGTTTCTTCATTTGTACTGAC 59.646 38.462 0.00 0.00 0.00 3.51
1778 1870 7.544622 CACTACTGACTGTTGGCTATACTTTA 58.455 38.462 0.00 0.00 0.00 1.85
1920 2013 5.163733 CCTCTTCTACCAGACTCGTAGTTTC 60.164 48.000 7.07 0.00 35.66 2.78
1927 2020 4.213482 ACCAGACTCGTAGTTTCAAATTGC 59.787 41.667 0.00 0.00 0.00 3.56
1956 2049 7.197071 TGTTCAAAACTGCGACACTTATTAT 57.803 32.000 0.00 0.00 0.00 1.28
1961 2054 5.991328 AACTGCGACACTTATTATGGATG 57.009 39.130 0.00 0.00 0.00 3.51
1963 2056 5.292765 ACTGCGACACTTATTATGGATGAG 58.707 41.667 0.00 0.00 0.00 2.90
1966 2059 4.926238 GCGACACTTATTATGGATGAGAGG 59.074 45.833 0.00 0.00 0.00 3.69
1968 2061 6.516718 CGACACTTATTATGGATGAGAGGTT 58.483 40.000 0.00 0.00 0.00 3.50
1970 2063 6.058183 ACACTTATTATGGATGAGAGGTTGC 58.942 40.000 0.00 0.00 0.00 4.17
1971 2064 6.057533 CACTTATTATGGATGAGAGGTTGCA 58.942 40.000 0.00 0.00 0.00 4.08
1975 2068 0.036732 TGGATGAGAGGTTGCACCAC 59.963 55.000 7.86 2.16 41.95 4.16
2001 2094 8.389779 TGATTCATTAGCACTGTGAAAACTAA 57.610 30.769 12.86 9.67 35.70 2.24
2044 2322 4.438744 GCCGAAAGATGTTTGAACCATAGG 60.439 45.833 0.00 0.00 0.00 2.57
2045 2323 4.941263 CCGAAAGATGTTTGAACCATAGGA 59.059 41.667 0.00 0.00 0.00 2.94
2046 2324 5.163754 CCGAAAGATGTTTGAACCATAGGAC 60.164 44.000 0.00 0.00 0.00 3.85
2047 2325 5.163754 CGAAAGATGTTTGAACCATAGGACC 60.164 44.000 0.00 0.00 0.00 4.46
2048 2326 4.927267 AGATGTTTGAACCATAGGACCA 57.073 40.909 0.00 0.00 0.00 4.02
2049 2327 5.456921 AGATGTTTGAACCATAGGACCAT 57.543 39.130 0.00 0.00 0.00 3.55
2050 2328 6.575244 AGATGTTTGAACCATAGGACCATA 57.425 37.500 0.00 0.00 0.00 2.74
2051 2329 6.595682 AGATGTTTGAACCATAGGACCATAG 58.404 40.000 0.00 0.00 0.00 2.23
2066 2350 2.025416 ACCATAGCCCATGTGCTTGTTA 60.025 45.455 8.32 0.00 42.75 2.41
2138 2422 3.128589 TGTCTGGAAATTAATCAAGCCGC 59.871 43.478 0.00 0.00 0.00 6.53
2139 2423 2.687935 TCTGGAAATTAATCAAGCCGCC 59.312 45.455 0.00 0.00 0.00 6.13
2141 2425 2.426738 TGGAAATTAATCAAGCCGCCTG 59.573 45.455 0.00 0.00 0.00 4.85
2143 2427 1.473258 AATTAATCAAGCCGCCTGCA 58.527 45.000 0.00 0.00 44.83 4.41
2147 2446 1.589716 AATCAAGCCGCCTGCAACTC 61.590 55.000 0.00 0.00 44.83 3.01
2189 2496 2.017782 GCCTGTCACTCTGTCGATCTA 58.982 52.381 0.00 0.00 0.00 1.98
2190 2497 2.423892 GCCTGTCACTCTGTCGATCTAA 59.576 50.000 0.00 0.00 0.00 2.10
2191 2498 3.732471 GCCTGTCACTCTGTCGATCTAAC 60.732 52.174 0.00 0.00 0.00 2.34
2204 2511 8.251026 TCTGTCGATCTAACAATAACAATCACT 58.749 33.333 0.00 0.00 0.00 3.41
2479 2787 0.036858 GAGCCAGGAACCAGTGACTC 60.037 60.000 0.00 0.00 0.00 3.36
2488 2796 0.474184 ACCAGTGACTCTGTTTGGGG 59.526 55.000 3.97 0.00 42.19 4.96
2569 2885 1.285373 TGGTGGTAGTGGTTGGTTTGT 59.715 47.619 0.00 0.00 0.00 2.83
2570 2886 2.291670 TGGTGGTAGTGGTTGGTTTGTT 60.292 45.455 0.00 0.00 0.00 2.83
2577 2893 1.735018 GTGGTTGGTTTGTTTTGGTGC 59.265 47.619 0.00 0.00 0.00 5.01
2639 2959 1.651987 ATTCCACACTTACGGATGCG 58.348 50.000 4.58 4.58 0.00 4.73
2651 2971 0.107993 CGGATGCGGCTATGGATGAT 60.108 55.000 0.00 0.00 0.00 2.45
2723 3052 1.909700 TTTGGTGAGGCACTTGATCC 58.090 50.000 0.00 0.00 41.55 3.36
2730 3059 2.141517 GAGGCACTTGATCCATCGATG 58.858 52.381 18.76 18.76 41.55 3.84
2802 3131 5.011982 TCTACTCCCTCCGATCCATAATT 57.988 43.478 0.00 0.00 0.00 1.40
2847 3176 6.307031 TGTCGCAGCTTTGAACTAATTAAA 57.693 33.333 0.00 0.00 0.00 1.52
2903 3233 3.055385 TGGATCGGAGGGAGTAGTTTTTG 60.055 47.826 0.00 0.00 0.00 2.44
2905 3235 4.161001 GGATCGGAGGGAGTAGTTTTTGTA 59.839 45.833 0.00 0.00 0.00 2.41
2906 3236 4.796038 TCGGAGGGAGTAGTTTTTGTAG 57.204 45.455 0.00 0.00 0.00 2.74
2907 3237 3.512724 TCGGAGGGAGTAGTTTTTGTAGG 59.487 47.826 0.00 0.00 0.00 3.18
2908 3238 3.369157 CGGAGGGAGTAGTTTTTGTAGGG 60.369 52.174 0.00 0.00 0.00 3.53
2909 3239 3.842436 GGAGGGAGTAGTTTTTGTAGGGA 59.158 47.826 0.00 0.00 0.00 4.20
2910 3240 4.081031 GGAGGGAGTAGTTTTTGTAGGGAG 60.081 50.000 0.00 0.00 0.00 4.30
2911 3241 4.500452 AGGGAGTAGTTTTTGTAGGGAGT 58.500 43.478 0.00 0.00 0.00 3.85
2912 3242 5.658474 AGGGAGTAGTTTTTGTAGGGAGTA 58.342 41.667 0.00 0.00 0.00 2.59
2913 3243 5.720520 AGGGAGTAGTTTTTGTAGGGAGTAG 59.279 44.000 0.00 0.00 0.00 2.57
2914 3244 5.483231 GGGAGTAGTTTTTGTAGGGAGTAGT 59.517 44.000 0.00 0.00 0.00 2.73
2915 3245 6.013898 GGGAGTAGTTTTTGTAGGGAGTAGTT 60.014 42.308 0.00 0.00 0.00 2.24
2916 3246 7.448420 GGAGTAGTTTTTGTAGGGAGTAGTTT 58.552 38.462 0.00 0.00 0.00 2.66
2917 3247 7.935755 GGAGTAGTTTTTGTAGGGAGTAGTTTT 59.064 37.037 0.00 0.00 0.00 2.43
2918 3248 9.334947 GAGTAGTTTTTGTAGGGAGTAGTTTTT 57.665 33.333 0.00 0.00 0.00 1.94
2919 3249 9.117183 AGTAGTTTTTGTAGGGAGTAGTTTTTG 57.883 33.333 0.00 0.00 0.00 2.44
2920 3250 7.949690 AGTTTTTGTAGGGAGTAGTTTTTGT 57.050 32.000 0.00 0.00 0.00 2.83
2962 3292 4.234530 ACTGAAATTGAGCTCAAAGCAC 57.765 40.909 31.55 21.56 45.56 4.40
2993 3323 2.093783 CACCGGACTTTGAAATACGCTC 59.906 50.000 9.46 0.00 0.00 5.03
2998 3328 4.489841 CGGACTTTGAAATACGCTCGTTAC 60.490 45.833 0.00 0.00 0.00 2.50
2999 3329 4.386652 GGACTTTGAAATACGCTCGTTACA 59.613 41.667 0.00 0.00 0.00 2.41
3002 3332 5.464389 ACTTTGAAATACGCTCGTTACAGTT 59.536 36.000 0.00 0.00 0.00 3.16
3106 3444 7.122715 TGTAGCAAATATTGTAAAGGTCCCAT 58.877 34.615 0.00 0.00 0.00 4.00
3107 3445 8.275758 TGTAGCAAATATTGTAAAGGTCCCATA 58.724 33.333 0.00 0.00 0.00 2.74
3108 3446 9.297037 GTAGCAAATATTGTAAAGGTCCCATAT 57.703 33.333 0.00 0.00 0.00 1.78
3119 3457 3.719871 AGGTCCCATATGTCAGTGTGTA 58.280 45.455 1.24 0.00 0.00 2.90
3163 3502 0.736325 AACTTCGGTGCGGAGAATCG 60.736 55.000 0.00 0.00 35.79 3.34
3164 3503 1.878522 CTTCGGTGCGGAGAATCGG 60.879 63.158 0.00 0.00 33.77 4.18
3165 3504 3.365291 TTCGGTGCGGAGAATCGGG 62.365 63.158 0.00 0.00 35.77 5.14
3166 3505 4.143333 CGGTGCGGAGAATCGGGT 62.143 66.667 0.00 0.00 35.77 5.28
3167 3506 2.267961 GGTGCGGAGAATCGGGTT 59.732 61.111 0.00 0.00 35.77 4.11
3168 3507 1.518774 GGTGCGGAGAATCGGGTTA 59.481 57.895 0.00 0.00 35.77 2.85
3169 3508 0.529992 GGTGCGGAGAATCGGGTTAG 60.530 60.000 0.00 0.00 35.77 2.34
3170 3509 0.458669 GTGCGGAGAATCGGGTTAGA 59.541 55.000 0.00 0.00 35.77 2.10
3544 3883 7.572502 ACGTAAAGTTTCGTAGATGGTTAAG 57.427 36.000 10.14 0.00 38.52 1.85
3545 3884 7.147976 ACGTAAAGTTTCGTAGATGGTTAAGT 58.852 34.615 10.14 0.00 38.52 2.24
3546 3885 8.296713 ACGTAAAGTTTCGTAGATGGTTAAGTA 58.703 33.333 10.14 0.00 38.52 2.24
3547 3886 8.792538 CGTAAAGTTTCGTAGATGGTTAAGTAG 58.207 37.037 0.00 0.00 35.04 2.57
3548 3887 9.080915 GTAAAGTTTCGTAGATGGTTAAGTAGG 57.919 37.037 0.00 0.00 35.04 3.18
3549 3888 6.847421 AGTTTCGTAGATGGTTAAGTAGGT 57.153 37.500 0.00 0.00 35.04 3.08
3550 3889 6.861144 AGTTTCGTAGATGGTTAAGTAGGTC 58.139 40.000 0.00 0.00 35.04 3.85
3551 3890 6.662663 AGTTTCGTAGATGGTTAAGTAGGTCT 59.337 38.462 0.00 0.00 35.04 3.85
3552 3891 7.831193 AGTTTCGTAGATGGTTAAGTAGGTCTA 59.169 37.037 0.00 0.00 35.04 2.59
3553 3892 7.798596 TTCGTAGATGGTTAAGTAGGTCTAG 57.201 40.000 0.00 0.00 35.04 2.43
3554 3893 5.762218 TCGTAGATGGTTAAGTAGGTCTAGC 59.238 44.000 0.00 0.00 0.00 3.42
3555 3894 5.530171 CGTAGATGGTTAAGTAGGTCTAGCA 59.470 44.000 0.00 0.00 0.00 3.49
3556 3895 6.207025 CGTAGATGGTTAAGTAGGTCTAGCAT 59.793 42.308 0.00 0.00 0.00 3.79
3557 3896 7.255520 CGTAGATGGTTAAGTAGGTCTAGCATT 60.256 40.741 0.00 0.00 0.00 3.56
3558 3897 7.439108 AGATGGTTAAGTAGGTCTAGCATTT 57.561 36.000 0.00 0.00 0.00 2.32
3559 3898 7.862675 AGATGGTTAAGTAGGTCTAGCATTTT 58.137 34.615 0.00 0.00 0.00 1.82
3560 3899 7.988028 AGATGGTTAAGTAGGTCTAGCATTTTC 59.012 37.037 0.00 0.00 0.00 2.29
3561 3900 6.103997 TGGTTAAGTAGGTCTAGCATTTTCG 58.896 40.000 0.00 0.00 0.00 3.46
3562 3901 6.071221 TGGTTAAGTAGGTCTAGCATTTTCGA 60.071 38.462 0.00 0.00 0.00 3.71
3563 3902 6.476053 GGTTAAGTAGGTCTAGCATTTTCGAG 59.524 42.308 0.00 0.00 0.00 4.04
3564 3903 5.662674 AAGTAGGTCTAGCATTTTCGAGT 57.337 39.130 0.00 0.00 0.00 4.18
3565 3904 5.251601 AGTAGGTCTAGCATTTTCGAGTC 57.748 43.478 0.00 0.00 0.00 3.36
3566 3905 3.528597 AGGTCTAGCATTTTCGAGTCC 57.471 47.619 0.00 0.00 0.00 3.85
3567 3906 3.100671 AGGTCTAGCATTTTCGAGTCCT 58.899 45.455 0.00 0.00 0.00 3.85
3568 3907 3.131400 AGGTCTAGCATTTTCGAGTCCTC 59.869 47.826 0.00 0.00 0.00 3.71
3569 3908 3.119101 GGTCTAGCATTTTCGAGTCCTCA 60.119 47.826 0.00 0.00 0.00 3.86
3570 3909 3.860536 GTCTAGCATTTTCGAGTCCTCAC 59.139 47.826 0.00 0.00 0.00 3.51
3571 3910 1.714794 AGCATTTTCGAGTCCTCACG 58.285 50.000 0.00 0.00 0.00 4.35
3572 3911 0.721718 GCATTTTCGAGTCCTCACGG 59.278 55.000 0.00 0.00 0.00 4.94
3573 3912 1.671850 GCATTTTCGAGTCCTCACGGA 60.672 52.381 0.00 0.00 36.83 4.69
3574 3913 2.263077 CATTTTCGAGTCCTCACGGAG 58.737 52.381 0.00 0.00 40.84 4.63
3582 3921 2.567049 CCTCACGGAGGTGTCGAC 59.433 66.667 9.11 9.11 44.25 4.20
3583 3922 2.176055 CTCACGGAGGTGTCGACG 59.824 66.667 11.62 0.00 44.68 5.12
3584 3923 3.948086 CTCACGGAGGTGTCGACGC 62.948 68.421 20.76 20.76 44.68 5.19
3587 3926 4.813526 CGGAGGTGTCGACGCGAG 62.814 72.222 21.89 6.55 36.23 5.03
3588 3927 4.477975 GGAGGTGTCGACGCGAGG 62.478 72.222 21.89 3.48 36.23 4.63
3589 3928 3.735029 GAGGTGTCGACGCGAGGT 61.735 66.667 21.89 7.26 36.23 3.85
3590 3929 2.359107 AGGTGTCGACGCGAGGTA 60.359 61.111 21.89 0.00 36.23 3.08
3591 3930 2.099831 GGTGTCGACGCGAGGTAG 59.900 66.667 21.89 0.00 36.23 3.18
3592 3931 2.576317 GTGTCGACGCGAGGTAGC 60.576 66.667 15.93 0.00 36.23 3.58
3593 3932 3.807538 TGTCGACGCGAGGTAGCC 61.808 66.667 15.93 0.00 36.23 3.93
3594 3933 3.807538 GTCGACGCGAGGTAGCCA 61.808 66.667 15.93 0.00 36.23 4.75
3595 3934 3.506096 TCGACGCGAGGTAGCCAG 61.506 66.667 15.93 0.00 0.00 4.85
3596 3935 3.812019 CGACGCGAGGTAGCCAGT 61.812 66.667 15.93 0.00 0.00 4.00
3597 3936 2.572284 GACGCGAGGTAGCCAGTT 59.428 61.111 15.93 0.00 0.00 3.16
3598 3937 1.516603 GACGCGAGGTAGCCAGTTC 60.517 63.158 15.93 0.00 0.00 3.01
3599 3938 2.209064 GACGCGAGGTAGCCAGTTCA 62.209 60.000 15.93 0.00 0.00 3.18
3600 3939 1.805945 CGCGAGGTAGCCAGTTCAC 60.806 63.158 0.00 0.00 0.00 3.18
3601 3940 1.448013 GCGAGGTAGCCAGTTCACC 60.448 63.158 0.00 0.00 0.00 4.02
3602 3941 1.889530 GCGAGGTAGCCAGTTCACCT 61.890 60.000 0.00 0.00 45.42 4.00
3603 3942 0.108615 CGAGGTAGCCAGTTCACCTG 60.109 60.000 0.00 0.00 42.78 4.00
3612 3951 2.672961 CAGTTCACCTGGCGATCTAA 57.327 50.000 0.00 0.00 37.54 2.10
3613 3952 3.185246 CAGTTCACCTGGCGATCTAAT 57.815 47.619 0.00 0.00 37.54 1.73
3614 3953 2.868583 CAGTTCACCTGGCGATCTAATG 59.131 50.000 0.00 0.00 37.54 1.90
3615 3954 2.501723 AGTTCACCTGGCGATCTAATGT 59.498 45.455 0.00 0.00 0.00 2.71
3616 3955 2.602257 TCACCTGGCGATCTAATGTG 57.398 50.000 0.00 0.00 0.00 3.21
3617 3956 2.107366 TCACCTGGCGATCTAATGTGA 58.893 47.619 0.00 0.00 0.00 3.58
3618 3957 2.700371 TCACCTGGCGATCTAATGTGAT 59.300 45.455 0.00 0.00 0.00 3.06
3619 3958 3.062763 CACCTGGCGATCTAATGTGATC 58.937 50.000 0.00 0.00 39.40 2.92
3629 3968 6.761731 GATCTAATGTGATCGCATATAGGC 57.238 41.667 21.57 14.85 34.34 3.93
3630 3969 5.659440 TCTAATGTGATCGCATATAGGCA 57.341 39.130 21.57 8.34 0.00 4.75
3631 3970 5.410924 TCTAATGTGATCGCATATAGGCAC 58.589 41.667 21.57 0.43 0.00 5.01
3632 3971 3.969287 ATGTGATCGCATATAGGCACT 57.031 42.857 20.05 0.00 46.37 4.40
3633 3972 3.751479 TGTGATCGCATATAGGCACTT 57.249 42.857 10.37 0.00 41.75 3.16
3634 3973 4.864704 TGTGATCGCATATAGGCACTTA 57.135 40.909 10.37 0.00 41.75 2.24
3635 3974 5.208463 TGTGATCGCATATAGGCACTTAA 57.792 39.130 10.37 0.00 41.75 1.85
3636 3975 5.793817 TGTGATCGCATATAGGCACTTAAT 58.206 37.500 10.37 0.00 41.75 1.40
3637 3976 6.230472 TGTGATCGCATATAGGCACTTAATT 58.770 36.000 10.37 0.00 41.75 1.40
3638 3977 6.710295 TGTGATCGCATATAGGCACTTAATTT 59.290 34.615 10.37 0.00 41.75 1.82
3639 3978 7.228507 TGTGATCGCATATAGGCACTTAATTTT 59.771 33.333 10.37 0.00 41.75 1.82
3640 3979 8.076178 GTGATCGCATATAGGCACTTAATTTTT 58.924 33.333 10.37 0.00 41.75 1.94
3641 3980 8.075574 TGATCGCATATAGGCACTTAATTTTTG 58.924 33.333 10.37 0.00 41.75 2.44
3642 3981 6.734137 TCGCATATAGGCACTTAATTTTTGG 58.266 36.000 10.37 0.00 41.75 3.28
3643 3982 6.544197 TCGCATATAGGCACTTAATTTTTGGA 59.456 34.615 10.37 0.00 41.75 3.53
3644 3983 6.636850 CGCATATAGGCACTTAATTTTTGGAC 59.363 38.462 10.37 0.00 41.75 4.02
3645 3984 6.636850 GCATATAGGCACTTAATTTTTGGACG 59.363 38.462 4.13 0.00 41.75 4.79
3646 3985 3.297830 AGGCACTTAATTTTTGGACGC 57.702 42.857 0.00 0.00 27.25 5.19
3647 3986 2.890945 AGGCACTTAATTTTTGGACGCT 59.109 40.909 0.00 0.00 27.25 5.07
3648 3987 4.076394 AGGCACTTAATTTTTGGACGCTA 58.924 39.130 0.00 0.00 27.25 4.26
3649 3988 4.156008 AGGCACTTAATTTTTGGACGCTAG 59.844 41.667 0.00 0.00 27.25 3.42
3650 3989 4.082949 GGCACTTAATTTTTGGACGCTAGT 60.083 41.667 0.00 0.00 0.00 2.57
3651 3990 5.122711 GGCACTTAATTTTTGGACGCTAGTA 59.877 40.000 0.00 0.00 0.00 1.82
3652 3991 6.183360 GGCACTTAATTTTTGGACGCTAGTAT 60.183 38.462 0.00 0.00 0.00 2.12
3653 3992 6.905609 GCACTTAATTTTTGGACGCTAGTATC 59.094 38.462 0.00 0.00 0.00 2.24
3654 3993 7.201617 GCACTTAATTTTTGGACGCTAGTATCT 60.202 37.037 0.00 0.00 0.00 1.98
3655 3994 8.116753 CACTTAATTTTTGGACGCTAGTATCTG 58.883 37.037 0.00 0.00 0.00 2.90
3656 3995 7.280205 ACTTAATTTTTGGACGCTAGTATCTGG 59.720 37.037 0.00 0.00 0.00 3.86
3657 3996 3.536956 TTTTGGACGCTAGTATCTGGG 57.463 47.619 0.00 0.00 0.00 4.45
3658 3997 2.154567 TTGGACGCTAGTATCTGGGT 57.845 50.000 0.00 0.00 0.00 4.51
3659 3998 1.399714 TGGACGCTAGTATCTGGGTG 58.600 55.000 0.00 0.00 0.00 4.61
3660 3999 0.674534 GGACGCTAGTATCTGGGTGG 59.325 60.000 0.00 0.00 0.00 4.61
3661 4000 1.400737 GACGCTAGTATCTGGGTGGT 58.599 55.000 0.00 0.00 0.00 4.16
3662 4001 1.755380 GACGCTAGTATCTGGGTGGTT 59.245 52.381 0.00 0.00 0.00 3.67
3663 4002 2.167900 GACGCTAGTATCTGGGTGGTTT 59.832 50.000 0.00 0.00 0.00 3.27
3664 4003 2.167900 ACGCTAGTATCTGGGTGGTTTC 59.832 50.000 0.00 0.00 0.00 2.78
3665 4004 2.431057 CGCTAGTATCTGGGTGGTTTCT 59.569 50.000 0.00 0.00 0.00 2.52
3666 4005 3.635373 CGCTAGTATCTGGGTGGTTTCTA 59.365 47.826 0.00 0.00 0.00 2.10
3667 4006 4.281182 CGCTAGTATCTGGGTGGTTTCTAT 59.719 45.833 0.00 0.00 0.00 1.98
3668 4007 5.475909 CGCTAGTATCTGGGTGGTTTCTATA 59.524 44.000 0.00 0.00 0.00 1.31
3669 4008 6.349445 CGCTAGTATCTGGGTGGTTTCTATAG 60.349 46.154 0.00 0.00 0.00 1.31
3670 4009 6.071278 GCTAGTATCTGGGTGGTTTCTATAGG 60.071 46.154 0.00 0.00 0.00 2.57
3671 4010 5.155905 AGTATCTGGGTGGTTTCTATAGGG 58.844 45.833 0.00 0.00 0.00 3.53
3672 4011 3.788116 TCTGGGTGGTTTCTATAGGGA 57.212 47.619 0.00 0.00 0.00 4.20
3673 4012 3.654273 TCTGGGTGGTTTCTATAGGGAG 58.346 50.000 0.00 0.00 0.00 4.30
3674 4013 2.104963 CTGGGTGGTTTCTATAGGGAGC 59.895 54.545 0.00 0.00 0.00 4.70
3675 4014 2.293586 TGGGTGGTTTCTATAGGGAGCT 60.294 50.000 0.00 0.00 0.00 4.09
3676 4015 2.369203 GGGTGGTTTCTATAGGGAGCTC 59.631 54.545 4.71 4.71 0.00 4.09
3677 4016 2.369203 GGTGGTTTCTATAGGGAGCTCC 59.631 54.545 25.59 25.59 0.00 4.70
3687 4026 0.682292 AGGGAGCTCCTAATTAGCGC 59.318 55.000 31.36 11.99 45.98 5.92
3690 4029 2.535012 GAGCTCCTAATTAGCGCCTT 57.465 50.000 2.29 0.00 44.87 4.35
3691 4030 3.662247 GAGCTCCTAATTAGCGCCTTA 57.338 47.619 2.29 0.00 44.87 2.69
3692 4031 3.991367 GAGCTCCTAATTAGCGCCTTAA 58.009 45.455 2.29 0.00 44.87 1.85
3693 4032 3.991121 GAGCTCCTAATTAGCGCCTTAAG 59.009 47.826 2.29 0.00 44.87 1.85
3694 4033 3.388350 AGCTCCTAATTAGCGCCTTAAGT 59.612 43.478 2.29 0.00 44.87 2.24
3695 4034 3.495001 GCTCCTAATTAGCGCCTTAAGTG 59.505 47.826 2.29 0.00 0.00 3.16
3701 4040 3.668386 GCGCCTTAAGTGCCACTT 58.332 55.556 15.44 15.44 46.76 3.16
3702 4041 1.210155 GCGCCTTAAGTGCCACTTG 59.790 57.895 20.12 4.73 46.76 3.16
3703 4042 1.875963 CGCCTTAAGTGCCACTTGG 59.124 57.895 20.12 14.17 39.11 3.61
3704 4043 0.605319 CGCCTTAAGTGCCACTTGGA 60.605 55.000 20.12 7.71 39.11 3.53
3705 4044 1.168714 GCCTTAAGTGCCACTTGGAG 58.831 55.000 20.12 15.95 39.11 3.86
3706 4045 1.271379 GCCTTAAGTGCCACTTGGAGA 60.271 52.381 20.12 0.00 39.11 3.71
3707 4046 2.814097 GCCTTAAGTGCCACTTGGAGAA 60.814 50.000 20.12 5.41 39.11 2.87
3708 4047 3.486383 CCTTAAGTGCCACTTGGAGAAA 58.514 45.455 20.12 5.05 39.11 2.52
3709 4048 3.253432 CCTTAAGTGCCACTTGGAGAAAC 59.747 47.826 20.12 0.00 39.11 2.78
3710 4049 1.692411 AAGTGCCACTTGGAGAAACC 58.308 50.000 9.77 0.00 37.00 3.27
3718 4057 3.565214 TGGAGAAACCAGCGCCCA 61.565 61.111 2.29 0.00 44.64 5.36
3719 4058 3.056328 GGAGAAACCAGCGCCCAC 61.056 66.667 2.29 0.00 38.79 4.61
3720 4059 2.281484 GAGAAACCAGCGCCCACA 60.281 61.111 2.29 0.00 0.00 4.17
3721 4060 2.281761 AGAAACCAGCGCCCACAG 60.282 61.111 2.29 0.00 0.00 3.66
3722 4061 4.043200 GAAACCAGCGCCCACAGC 62.043 66.667 2.29 0.00 38.52 4.40
3752 4091 3.701454 GGGCGGCCCATTTAAACA 58.299 55.556 32.90 0.00 44.65 2.83
3753 4092 2.207580 GGGCGGCCCATTTAAACAT 58.792 52.632 32.90 0.00 44.65 2.71
3754 4093 0.104120 GGGCGGCCCATTTAAACATC 59.896 55.000 32.90 0.00 44.65 3.06
3755 4094 0.820871 GGCGGCCCATTTAAACATCA 59.179 50.000 8.12 0.00 0.00 3.07
3756 4095 1.470805 GGCGGCCCATTTAAACATCAC 60.471 52.381 8.12 0.00 0.00 3.06
3757 4096 1.476488 GCGGCCCATTTAAACATCACT 59.524 47.619 0.00 0.00 0.00 3.41
3758 4097 2.479560 GCGGCCCATTTAAACATCACTC 60.480 50.000 0.00 0.00 0.00 3.51
3759 4098 2.099098 CGGCCCATTTAAACATCACTCC 59.901 50.000 0.00 0.00 0.00 3.85
3760 4099 2.430694 GGCCCATTTAAACATCACTCCC 59.569 50.000 0.00 0.00 0.00 4.30
3761 4100 3.365472 GCCCATTTAAACATCACTCCCT 58.635 45.455 0.00 0.00 0.00 4.20
3762 4101 3.381590 GCCCATTTAAACATCACTCCCTC 59.618 47.826 0.00 0.00 0.00 4.30
3763 4102 4.599041 CCCATTTAAACATCACTCCCTCA 58.401 43.478 0.00 0.00 0.00 3.86
3764 4103 4.399303 CCCATTTAAACATCACTCCCTCAC 59.601 45.833 0.00 0.00 0.00 3.51
3765 4104 4.399303 CCATTTAAACATCACTCCCTCACC 59.601 45.833 0.00 0.00 0.00 4.02
3766 4105 3.713826 TTAAACATCACTCCCTCACCC 57.286 47.619 0.00 0.00 0.00 4.61
3767 4106 1.747444 AAACATCACTCCCTCACCCT 58.253 50.000 0.00 0.00 0.00 4.34
3768 4107 1.280457 AACATCACTCCCTCACCCTC 58.720 55.000 0.00 0.00 0.00 4.30
3769 4108 0.415429 ACATCACTCCCTCACCCTCT 59.585 55.000 0.00 0.00 0.00 3.69
3770 4109 1.203364 ACATCACTCCCTCACCCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
3771 4110 1.484240 CATCACTCCCTCACCCTCTTC 59.516 57.143 0.00 0.00 0.00 2.87
3772 4111 0.612174 TCACTCCCTCACCCTCTTCG 60.612 60.000 0.00 0.00 0.00 3.79
3773 4112 1.985116 ACTCCCTCACCCTCTTCGC 60.985 63.158 0.00 0.00 0.00 4.70
3774 4113 1.684049 CTCCCTCACCCTCTTCGCT 60.684 63.158 0.00 0.00 0.00 4.93
3775 4114 0.395862 CTCCCTCACCCTCTTCGCTA 60.396 60.000 0.00 0.00 0.00 4.26
3776 4115 0.040646 TCCCTCACCCTCTTCGCTAA 59.959 55.000 0.00 0.00 0.00 3.09
3777 4116 0.461961 CCCTCACCCTCTTCGCTAAG 59.538 60.000 0.00 0.00 0.00 2.18
3778 4117 1.187087 CCTCACCCTCTTCGCTAAGT 58.813 55.000 0.00 0.00 34.13 2.24
3779 4118 1.550976 CCTCACCCTCTTCGCTAAGTT 59.449 52.381 0.00 0.00 34.13 2.66
3780 4119 2.417515 CCTCACCCTCTTCGCTAAGTTC 60.418 54.545 0.00 0.00 34.13 3.01
3781 4120 1.201647 TCACCCTCTTCGCTAAGTTCG 59.798 52.381 0.00 0.00 34.13 3.95
3782 4121 0.108756 ACCCTCTTCGCTAAGTTCGC 60.109 55.000 0.00 0.00 34.13 4.70
3783 4122 0.173708 CCCTCTTCGCTAAGTTCGCT 59.826 55.000 0.00 0.00 34.13 4.93
3784 4123 1.551145 CCTCTTCGCTAAGTTCGCTC 58.449 55.000 0.00 0.00 34.13 5.03
3785 4124 1.184349 CTCTTCGCTAAGTTCGCTCG 58.816 55.000 0.00 0.00 34.13 5.03
3786 4125 0.797249 TCTTCGCTAAGTTCGCTCGC 60.797 55.000 0.00 0.00 34.13 5.03
3787 4126 0.798771 CTTCGCTAAGTTCGCTCGCT 60.799 55.000 0.00 0.00 0.00 4.93
3788 4127 0.797249 TTCGCTAAGTTCGCTCGCTC 60.797 55.000 0.00 0.00 0.00 5.03
3789 4128 1.226435 CGCTAAGTTCGCTCGCTCT 60.226 57.895 0.00 0.00 0.00 4.09
3790 4129 0.027716 CGCTAAGTTCGCTCGCTCTA 59.972 55.000 0.00 0.00 0.00 2.43
3791 4130 1.468895 GCTAAGTTCGCTCGCTCTAC 58.531 55.000 0.00 0.00 0.00 2.59
3792 4131 1.860800 GCTAAGTTCGCTCGCTCTACC 60.861 57.143 0.00 0.00 0.00 3.18
3793 4132 1.400846 CTAAGTTCGCTCGCTCTACCA 59.599 52.381 0.00 0.00 0.00 3.25
3794 4133 0.601558 AAGTTCGCTCGCTCTACCAA 59.398 50.000 0.00 0.00 0.00 3.67
3795 4134 0.601558 AGTTCGCTCGCTCTACCAAA 59.398 50.000 0.00 0.00 0.00 3.28
3796 4135 1.204941 AGTTCGCTCGCTCTACCAAAT 59.795 47.619 0.00 0.00 0.00 2.32
3797 4136 2.426024 AGTTCGCTCGCTCTACCAAATA 59.574 45.455 0.00 0.00 0.00 1.40
3798 4137 3.119245 AGTTCGCTCGCTCTACCAAATAA 60.119 43.478 0.00 0.00 0.00 1.40
3799 4138 3.728076 TCGCTCGCTCTACCAAATAAT 57.272 42.857 0.00 0.00 0.00 1.28
3800 4139 3.639538 TCGCTCGCTCTACCAAATAATC 58.360 45.455 0.00 0.00 0.00 1.75
3801 4140 3.067601 TCGCTCGCTCTACCAAATAATCA 59.932 43.478 0.00 0.00 0.00 2.57
3802 4141 3.990469 CGCTCGCTCTACCAAATAATCAT 59.010 43.478 0.00 0.00 0.00 2.45
3803 4142 4.090642 CGCTCGCTCTACCAAATAATCATC 59.909 45.833 0.00 0.00 0.00 2.92
3804 4143 4.991056 GCTCGCTCTACCAAATAATCATCA 59.009 41.667 0.00 0.00 0.00 3.07
3805 4144 5.466728 GCTCGCTCTACCAAATAATCATCAA 59.533 40.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.451783 GGATGCCACGTGTCCAATTC 59.548 55.000 15.65 6.65 32.23 2.17
38 39 2.546795 GGCTCGAGTGTTGGGATAGATG 60.547 54.545 15.13 0.00 0.00 2.90
53 54 1.377366 GGAGACGTGATGAGGCTCGA 61.377 60.000 10.42 0.00 0.00 4.04
80 81 7.051000 ACAAGAGATACCTAGAAAAATGGAGC 58.949 38.462 0.00 0.00 0.00 4.70
131 132 4.332268 GCAGAGGAGTTAAAGAGCAAGATG 59.668 45.833 0.00 0.00 0.00 2.90
147 148 2.757868 GCTCTCACTTCTTAGCAGAGGA 59.242 50.000 0.00 0.00 34.47 3.71
193 195 2.490718 CCCTGGGTGGAAAATTGACTGA 60.491 50.000 3.97 0.00 38.35 3.41
271 295 2.859981 GCCTGCCACCAACACCAAG 61.860 63.158 0.00 0.00 0.00 3.61
289 313 4.711949 AACGAGCCTGCCTGCCTG 62.712 66.667 0.00 0.00 0.00 4.85
290 314 4.400961 GAACGAGCCTGCCTGCCT 62.401 66.667 0.00 0.00 0.00 4.75
358 386 1.949133 GTCGCAGTCGCACACTCAA 60.949 57.895 0.00 0.00 38.40 3.02
438 466 0.953471 TTTCTTGACGACATGCGGGG 60.953 55.000 12.85 2.37 46.49 5.73
485 513 2.427245 CCATCTCCTCGTTCCGGCT 61.427 63.158 0.00 0.00 0.00 5.52
574 602 3.006110 ACATGCACATTCAGGAAAAGTGG 59.994 43.478 15.24 5.99 33.68 4.00
578 606 3.567585 TCGAACATGCACATTCAGGAAAA 59.432 39.130 11.28 0.00 0.00 2.29
616 644 1.118838 AGCGATTCCCAGGAGAGAAG 58.881 55.000 0.00 0.00 0.00 2.85
661 689 2.031420 GCAGTGGGAAAACGGTAAAGAC 60.031 50.000 0.00 0.00 0.00 3.01
667 695 1.720694 CGTTGCAGTGGGAAAACGGT 61.721 55.000 0.00 0.00 41.16 4.83
670 698 0.031994 ATGCGTTGCAGTGGGAAAAC 59.968 50.000 0.00 0.00 43.65 2.43
683 711 2.356135 CTACTAGGGTTTGCATGCGTT 58.644 47.619 14.09 0.00 0.00 4.84
692 720 2.188817 CAGGAGCACCTACTAGGGTTT 58.811 52.381 1.02 0.00 45.94 3.27
696 724 1.736586 CGCAGGAGCACCTACTAGG 59.263 63.158 1.02 0.00 45.94 3.02
710 738 2.580867 GCTCTCTACACGCCGCAG 60.581 66.667 0.00 0.00 0.00 5.18
714 742 2.102553 GACGGCTCTCTACACGCC 59.897 66.667 0.00 0.00 40.40 5.68
718 746 1.300481 CTGATCGACGGCTCTCTACA 58.700 55.000 0.00 0.00 0.00 2.74
785 819 0.454789 CATCGCACCACGTACGTACA 60.455 55.000 22.34 3.62 44.19 2.90
800 834 3.853330 CTTGACGTGCCCGCATCG 61.853 66.667 0.00 9.17 37.70 3.84
802 836 2.108514 CATCTTGACGTGCCCGCAT 61.109 57.895 0.00 0.00 37.70 4.73
803 837 2.741985 CATCTTGACGTGCCCGCA 60.742 61.111 0.00 0.00 37.70 5.69
804 838 2.740714 GACATCTTGACGTGCCCGC 61.741 63.158 0.00 0.00 37.70 6.13
816 853 2.159366 CGAAGGCGTGAACTAGACATCT 60.159 50.000 0.00 0.00 0.00 2.90
909 947 1.683917 GGTGTGTGAGAGTGAGTGAGT 59.316 52.381 0.00 0.00 0.00 3.41
910 948 1.000283 GGGTGTGTGAGAGTGAGTGAG 60.000 57.143 0.00 0.00 0.00 3.51
911 949 1.040646 GGGTGTGTGAGAGTGAGTGA 58.959 55.000 0.00 0.00 0.00 3.41
912 950 0.752658 TGGGTGTGTGAGAGTGAGTG 59.247 55.000 0.00 0.00 0.00 3.51
913 951 0.753262 GTGGGTGTGTGAGAGTGAGT 59.247 55.000 0.00 0.00 0.00 3.41
914 952 1.043816 AGTGGGTGTGTGAGAGTGAG 58.956 55.000 0.00 0.00 0.00 3.51
915 953 1.496060 AAGTGGGTGTGTGAGAGTGA 58.504 50.000 0.00 0.00 0.00 3.41
916 954 2.332063 AAAGTGGGTGTGTGAGAGTG 57.668 50.000 0.00 0.00 0.00 3.51
917 955 3.039011 AGTAAAGTGGGTGTGTGAGAGT 58.961 45.455 0.00 0.00 0.00 3.24
918 956 3.753294 AGTAAAGTGGGTGTGTGAGAG 57.247 47.619 0.00 0.00 0.00 3.20
919 957 3.181458 GGAAGTAAAGTGGGTGTGTGAGA 60.181 47.826 0.00 0.00 0.00 3.27
920 958 3.139077 GGAAGTAAAGTGGGTGTGTGAG 58.861 50.000 0.00 0.00 0.00 3.51
921 959 2.775384 AGGAAGTAAAGTGGGTGTGTGA 59.225 45.455 0.00 0.00 0.00 3.58
953 991 2.578163 TAGCAGCTGCCGATGTGACC 62.578 60.000 34.39 3.66 43.38 4.02
996 1034 0.028770 CGCTCTCGCTTTCTCGATCT 59.971 55.000 0.00 0.00 37.87 2.75
1004 1042 0.243907 TCTTGCTACGCTCTCGCTTT 59.756 50.000 0.00 0.00 39.84 3.51
1008 1046 0.171455 ACCTTCTTGCTACGCTCTCG 59.829 55.000 0.00 0.00 42.43 4.04
1010 1048 0.247736 CCACCTTCTTGCTACGCTCT 59.752 55.000 0.00 0.00 0.00 4.09
1016 1054 2.646930 CATGATGCCACCTTCTTGCTA 58.353 47.619 0.00 0.00 0.00 3.49
1020 1058 1.033746 CGCCATGATGCCACCTTCTT 61.034 55.000 0.00 0.00 0.00 2.52
1021 1059 1.452651 CGCCATGATGCCACCTTCT 60.453 57.895 0.00 0.00 0.00 2.85
1022 1060 1.451927 TCGCCATGATGCCACCTTC 60.452 57.895 0.00 0.00 0.00 3.46
1023 1061 1.750399 GTCGCCATGATGCCACCTT 60.750 57.895 0.00 0.00 0.00 3.50
1024 1062 2.124570 GTCGCCATGATGCCACCT 60.125 61.111 0.00 0.00 0.00 4.00
1025 1063 3.576356 CGTCGCCATGATGCCACC 61.576 66.667 0.00 0.00 0.00 4.61
1026 1064 3.576356 CCGTCGCCATGATGCCAC 61.576 66.667 0.00 0.00 31.85 5.01
1343 1381 2.027460 GTTGGCCTTGGTGTTGCG 59.973 61.111 3.32 0.00 0.00 4.85
1376 1414 1.809651 CGTAGAGGAGGGAGACGTACC 60.810 61.905 0.00 0.00 0.00 3.34
1392 1430 1.545204 GGGAGGTAGGTAGAGCCGTAG 60.545 61.905 0.00 0.00 43.70 3.51
1394 1432 1.229643 GGGAGGTAGGTAGAGCCGT 59.770 63.158 0.00 0.00 43.70 5.68
1395 1433 1.531128 GGGGAGGTAGGTAGAGCCG 60.531 68.421 0.00 0.00 43.70 5.52
1396 1434 0.759812 GTGGGGAGGTAGGTAGAGCC 60.760 65.000 0.00 0.00 37.58 4.70
1397 1435 0.032416 TGTGGGGAGGTAGGTAGAGC 60.032 60.000 0.00 0.00 0.00 4.09
1398 1436 2.320781 CATGTGGGGAGGTAGGTAGAG 58.679 57.143 0.00 0.00 0.00 2.43
1399 1437 1.691482 GCATGTGGGGAGGTAGGTAGA 60.691 57.143 0.00 0.00 0.00 2.59
1400 1438 0.759346 GCATGTGGGGAGGTAGGTAG 59.241 60.000 0.00 0.00 0.00 3.18
1401 1439 0.043485 TGCATGTGGGGAGGTAGGTA 59.957 55.000 0.00 0.00 0.00 3.08
1402 1440 0.624500 ATGCATGTGGGGAGGTAGGT 60.625 55.000 0.00 0.00 0.00 3.08
1410 1448 3.949754 GGTGATATGATATGCATGTGGGG 59.050 47.826 10.16 0.00 37.87 4.96
1413 1464 4.330894 GGTCGGTGATATGATATGCATGTG 59.669 45.833 10.16 0.00 37.87 3.21
1468 1527 1.597797 ATGCCATTTGTGCCGTGGAG 61.598 55.000 0.00 0.00 34.94 3.86
1474 1533 1.064060 GAGACGTATGCCATTTGTGCC 59.936 52.381 0.00 0.00 0.00 5.01
1485 1544 2.776312 ATACAGCCACGAGACGTATG 57.224 50.000 0.00 0.00 38.32 2.39
1528 1587 3.883830 CCACAGGGCATCTATAGCTAG 57.116 52.381 0.00 0.00 0.00 3.42
1543 1603 1.230635 CCAGACCGAACAAGCCACAG 61.231 60.000 0.00 0.00 0.00 3.66
1614 1674 3.801307 AAGGGAAGTAATTTGGGACGT 57.199 42.857 0.00 0.00 0.00 4.34
1643 1703 3.181367 CTGCAGTGTGCCGGATTC 58.819 61.111 5.05 0.00 44.23 2.52
1663 1723 2.122783 TGCTGTATAGGTTGGTTGGC 57.877 50.000 0.00 0.00 0.00 4.52
1682 1742 4.160329 TCCCATAATAGATCGACAGCCTT 58.840 43.478 0.00 0.00 0.00 4.35
1733 1799 4.993584 AGTGCTTCAGTAGTTCAGTTCATG 59.006 41.667 0.00 0.00 0.00 3.07
1866 1959 1.043116 CGGGATGGCTCAGTCACCTA 61.043 60.000 0.00 0.00 0.00 3.08
1920 2013 5.020758 CAGTTTTGAACAAACCGCAATTTG 58.979 37.500 7.87 7.87 43.81 2.32
1927 2020 1.843753 GTCGCAGTTTTGAACAAACCG 59.156 47.619 0.00 2.18 0.00 4.44
1966 2059 3.191162 TGCTAATGAATCAGTGGTGCAAC 59.809 43.478 0.00 0.00 0.00 4.17
1968 2061 2.749076 GTGCTAATGAATCAGTGGTGCA 59.251 45.455 0.00 0.00 0.00 4.57
1970 2063 4.005650 ACAGTGCTAATGAATCAGTGGTG 58.994 43.478 0.00 0.00 35.93 4.17
1971 2064 4.005650 CACAGTGCTAATGAATCAGTGGT 58.994 43.478 0.00 0.00 35.93 4.16
1975 2068 6.906659 AGTTTTCACAGTGCTAATGAATCAG 58.093 36.000 0.00 0.00 32.61 2.90
2044 2322 1.027357 CAAGCACATGGGCTATGGTC 58.973 55.000 25.68 6.18 45.07 4.02
2045 2323 0.332632 ACAAGCACATGGGCTATGGT 59.667 50.000 25.68 18.81 45.07 3.55
2046 2324 1.477553 AACAAGCACATGGGCTATGG 58.522 50.000 25.68 18.12 45.07 2.74
2047 2325 2.358898 GGTAACAAGCACATGGGCTATG 59.641 50.000 25.68 23.68 45.07 2.23
2048 2326 2.654863 GGTAACAAGCACATGGGCTAT 58.345 47.619 25.68 15.20 45.07 2.97
2049 2327 2.122783 GGTAACAAGCACATGGGCTA 57.877 50.000 25.68 3.98 45.07 3.93
2138 2422 0.393537 GGAGGGACATGAGTTGCAGG 60.394 60.000 0.00 0.00 0.00 4.85
2139 2423 0.742281 CGGAGGGACATGAGTTGCAG 60.742 60.000 0.00 0.00 0.00 4.41
2141 2425 0.535335 TACGGAGGGACATGAGTTGC 59.465 55.000 0.00 0.00 0.00 4.17
2143 2427 2.100989 GACTACGGAGGGACATGAGTT 58.899 52.381 0.00 0.00 0.00 3.01
2147 2446 0.747255 CAGGACTACGGAGGGACATG 59.253 60.000 0.00 0.00 0.00 3.21
2189 2496 5.009610 AGCGAAACCAGTGATTGTTATTGTT 59.990 36.000 0.00 0.00 0.00 2.83
2190 2497 4.518970 AGCGAAACCAGTGATTGTTATTGT 59.481 37.500 0.00 0.00 0.00 2.71
2191 2498 5.046910 AGCGAAACCAGTGATTGTTATTG 57.953 39.130 0.00 0.00 0.00 1.90
2204 2511 1.227704 TGCGAGGAAAGCGAAACCA 60.228 52.632 0.00 0.00 37.44 3.67
2373 2680 1.740332 GACTAGAAGGAGGAGGCGGC 61.740 65.000 0.00 0.00 0.00 6.53
2379 2686 2.158593 CGGAGATGGACTAGAAGGAGGA 60.159 54.545 0.00 0.00 0.00 3.71
2479 2787 2.355007 GGCATTTCATTCCCCCAAACAG 60.355 50.000 0.00 0.00 0.00 3.16
2488 2796 4.526970 TCCTACTTGAGGCATTTCATTCC 58.473 43.478 0.00 0.00 46.25 3.01
2569 2885 7.230510 ACATAAGAGTTCAATACAGCACCAAAA 59.769 33.333 0.00 0.00 0.00 2.44
2570 2886 6.714810 ACATAAGAGTTCAATACAGCACCAAA 59.285 34.615 0.00 0.00 0.00 3.28
2577 2893 7.689812 CAGCGAAAACATAAGAGTTCAATACAG 59.310 37.037 0.00 0.00 0.00 2.74
2639 2959 2.408050 GTCGACACATCATCCATAGCC 58.592 52.381 11.55 0.00 0.00 3.93
2723 3052 4.201851 ACGAAAAGCTTGATTCCATCGATG 60.202 41.667 18.76 18.76 33.61 3.84
2730 3059 4.749245 TCAGAACGAAAAGCTTGATTCC 57.251 40.909 0.00 0.00 0.00 3.01
2732 3061 5.947228 TCATCAGAACGAAAAGCTTGATT 57.053 34.783 0.00 0.00 0.00 2.57
2733 3062 5.163683 CCATCATCAGAACGAAAAGCTTGAT 60.164 40.000 0.00 0.00 0.00 2.57
2813 3142 9.450807 GTTCAAAGCTGCGACATTTATTATAAT 57.549 29.630 2.97 2.97 0.00 1.28
2814 3143 8.673711 AGTTCAAAGCTGCGACATTTATTATAA 58.326 29.630 0.00 0.00 0.00 0.98
2815 3144 8.208718 AGTTCAAAGCTGCGACATTTATTATA 57.791 30.769 0.00 0.00 0.00 0.98
2816 3145 7.088589 AGTTCAAAGCTGCGACATTTATTAT 57.911 32.000 0.00 0.00 0.00 1.28
2817 3146 6.494893 AGTTCAAAGCTGCGACATTTATTA 57.505 33.333 0.00 0.00 0.00 0.98
2818 3147 5.376854 AGTTCAAAGCTGCGACATTTATT 57.623 34.783 0.00 0.00 0.00 1.40
2819 3148 6.494893 TTAGTTCAAAGCTGCGACATTTAT 57.505 33.333 0.00 0.00 0.00 1.40
2820 3149 5.933187 TTAGTTCAAAGCTGCGACATTTA 57.067 34.783 0.00 0.00 0.00 1.40
2821 3150 4.829064 TTAGTTCAAAGCTGCGACATTT 57.171 36.364 0.00 0.00 0.00 2.32
2822 3151 5.376854 AATTAGTTCAAAGCTGCGACATT 57.623 34.783 0.00 0.00 0.00 2.71
2823 3152 6.494893 TTAATTAGTTCAAAGCTGCGACAT 57.505 33.333 0.00 0.00 0.00 3.06
2847 3176 8.038944 TGTTGTAGTTCTAATCGAAGGCTAAAT 58.961 33.333 0.00 0.00 30.85 1.40
2863 3192 8.455682 TCCGATCCAAAATAATTGTTGTAGTTC 58.544 33.333 0.00 0.00 0.00 3.01
2870 3199 5.515106 TCCCTCCGATCCAAAATAATTGTT 58.485 37.500 0.00 0.00 0.00 2.83
2905 3235 8.883302 TGTATTTACCTACAAAAACTACTCCCT 58.117 33.333 0.00 0.00 0.00 4.20
2906 3236 9.676861 ATGTATTTACCTACAAAAACTACTCCC 57.323 33.333 0.00 0.00 35.37 4.30
2918 3248 9.647797 CAGTAACTGTCAATGTATTTACCTACA 57.352 33.333 0.00 0.00 36.14 2.74
2919 3249 9.865321 TCAGTAACTGTCAATGTATTTACCTAC 57.135 33.333 0.00 0.00 32.61 3.18
2940 3270 4.821260 TGTGCTTTGAGCTCAATTTCAGTA 59.179 37.500 28.89 19.21 41.15 2.74
3011 3341 3.936453 GGTGACCGTATGATTGCTTTGTA 59.064 43.478 0.00 0.00 0.00 2.41
3095 3433 4.534500 ACACACTGACATATGGGACCTTTA 59.466 41.667 7.80 0.00 0.00 1.85
3098 3436 2.551270 ACACACTGACATATGGGACCT 58.449 47.619 7.80 0.00 0.00 3.85
3102 3440 7.447374 TTTCTTTTACACACTGACATATGGG 57.553 36.000 7.80 0.00 0.00 4.00
3520 3859 7.147976 ACTTAACCATCTACGAAACTTTACGT 58.852 34.615 0.00 0.00 44.72 3.57
3521 3860 7.572502 ACTTAACCATCTACGAAACTTTACG 57.427 36.000 0.00 0.00 0.00 3.18
3522 3861 9.080915 CCTACTTAACCATCTACGAAACTTTAC 57.919 37.037 0.00 0.00 0.00 2.01
3523 3862 8.806146 ACCTACTTAACCATCTACGAAACTTTA 58.194 33.333 0.00 0.00 0.00 1.85
3524 3863 7.674120 ACCTACTTAACCATCTACGAAACTTT 58.326 34.615 0.00 0.00 0.00 2.66
3525 3864 7.178097 AGACCTACTTAACCATCTACGAAACTT 59.822 37.037 0.00 0.00 0.00 2.66
3526 3865 6.662663 AGACCTACTTAACCATCTACGAAACT 59.337 38.462 0.00 0.00 0.00 2.66
3527 3866 6.861144 AGACCTACTTAACCATCTACGAAAC 58.139 40.000 0.00 0.00 0.00 2.78
3528 3867 7.201767 GCTAGACCTACTTAACCATCTACGAAA 60.202 40.741 0.00 0.00 0.00 3.46
3529 3868 6.261826 GCTAGACCTACTTAACCATCTACGAA 59.738 42.308 0.00 0.00 0.00 3.85
3530 3869 5.762218 GCTAGACCTACTTAACCATCTACGA 59.238 44.000 0.00 0.00 0.00 3.43
3531 3870 5.530171 TGCTAGACCTACTTAACCATCTACG 59.470 44.000 0.00 0.00 0.00 3.51
3532 3871 6.956202 TGCTAGACCTACTTAACCATCTAC 57.044 41.667 0.00 0.00 0.00 2.59
3533 3872 8.548880 AAATGCTAGACCTACTTAACCATCTA 57.451 34.615 0.00 0.00 0.00 1.98
3534 3873 7.439108 AAATGCTAGACCTACTTAACCATCT 57.561 36.000 0.00 0.00 0.00 2.90
3535 3874 7.042658 CGAAAATGCTAGACCTACTTAACCATC 60.043 40.741 0.00 0.00 0.00 3.51
3536 3875 6.761714 CGAAAATGCTAGACCTACTTAACCAT 59.238 38.462 0.00 0.00 0.00 3.55
3537 3876 6.071221 TCGAAAATGCTAGACCTACTTAACCA 60.071 38.462 0.00 0.00 0.00 3.67
3538 3877 6.335777 TCGAAAATGCTAGACCTACTTAACC 58.664 40.000 0.00 0.00 0.00 2.85
3539 3878 7.034397 ACTCGAAAATGCTAGACCTACTTAAC 58.966 38.462 0.00 0.00 0.00 2.01
3540 3879 7.166691 ACTCGAAAATGCTAGACCTACTTAA 57.833 36.000 0.00 0.00 0.00 1.85
3541 3880 6.183360 GGACTCGAAAATGCTAGACCTACTTA 60.183 42.308 0.00 0.00 0.00 2.24
3542 3881 5.394333 GGACTCGAAAATGCTAGACCTACTT 60.394 44.000 0.00 0.00 0.00 2.24
3543 3882 4.098196 GGACTCGAAAATGCTAGACCTACT 59.902 45.833 0.00 0.00 0.00 2.57
3544 3883 4.098196 AGGACTCGAAAATGCTAGACCTAC 59.902 45.833 0.00 0.00 33.32 3.18
3545 3884 4.279145 AGGACTCGAAAATGCTAGACCTA 58.721 43.478 0.00 0.00 33.32 3.08
3546 3885 3.100671 AGGACTCGAAAATGCTAGACCT 58.899 45.455 0.00 0.00 30.76 3.85
3547 3886 3.119101 TGAGGACTCGAAAATGCTAGACC 60.119 47.826 0.00 0.00 0.00 3.85
3548 3887 3.860536 GTGAGGACTCGAAAATGCTAGAC 59.139 47.826 0.00 0.00 0.00 2.59
3549 3888 3.427638 CGTGAGGACTCGAAAATGCTAGA 60.428 47.826 0.00 0.00 35.44 2.43
3550 3889 2.854777 CGTGAGGACTCGAAAATGCTAG 59.145 50.000 0.00 0.00 35.44 3.42
3551 3890 2.876091 CGTGAGGACTCGAAAATGCTA 58.124 47.619 0.00 0.00 35.44 3.49
3552 3891 1.714794 CGTGAGGACTCGAAAATGCT 58.285 50.000 0.00 0.00 35.44 3.79
3566 3905 2.176055 CGTCGACACCTCCGTGAG 59.824 66.667 17.16 0.00 43.14 3.51
3567 3906 4.034258 GCGTCGACACCTCCGTGA 62.034 66.667 17.16 0.00 43.14 4.35
3570 3909 4.813526 CTCGCGTCGACACCTCCG 62.814 72.222 17.16 9.46 0.00 4.63
3571 3910 4.477975 CCTCGCGTCGACACCTCC 62.478 72.222 17.16 0.00 0.00 4.30
3572 3911 2.307137 CTACCTCGCGTCGACACCTC 62.307 65.000 17.16 0.25 0.00 3.85
3573 3912 2.359107 TACCTCGCGTCGACACCT 60.359 61.111 17.16 0.00 0.00 4.00
3574 3913 2.099831 CTACCTCGCGTCGACACC 59.900 66.667 17.16 4.71 0.00 4.16
3575 3914 2.576317 GCTACCTCGCGTCGACAC 60.576 66.667 17.16 4.66 0.00 3.67
3576 3915 3.807538 GGCTACCTCGCGTCGACA 61.808 66.667 17.16 0.00 0.00 4.35
3577 3916 3.736482 CTGGCTACCTCGCGTCGAC 62.736 68.421 5.77 5.18 0.00 4.20
3578 3917 3.506096 CTGGCTACCTCGCGTCGA 61.506 66.667 5.77 2.20 0.00 4.20
3579 3918 3.338126 AACTGGCTACCTCGCGTCG 62.338 63.158 5.77 0.00 0.00 5.12
3580 3919 1.516603 GAACTGGCTACCTCGCGTC 60.517 63.158 5.77 0.00 0.00 5.19
3581 3920 2.273179 TGAACTGGCTACCTCGCGT 61.273 57.895 5.77 0.00 0.00 6.01
3582 3921 1.805945 GTGAACTGGCTACCTCGCG 60.806 63.158 0.00 0.00 0.00 5.87
3583 3922 1.448013 GGTGAACTGGCTACCTCGC 60.448 63.158 0.00 0.00 0.00 5.03
3584 3923 0.108615 CAGGTGAACTGGCTACCTCG 60.109 60.000 0.00 0.00 42.72 4.63
3585 3924 3.842869 CAGGTGAACTGGCTACCTC 57.157 57.895 0.00 0.00 42.72 3.85
3594 3933 2.501723 ACATTAGATCGCCAGGTGAACT 59.498 45.455 16.44 16.44 0.00 3.01
3595 3934 2.609459 CACATTAGATCGCCAGGTGAAC 59.391 50.000 6.84 4.19 0.00 3.18
3596 3935 2.499693 TCACATTAGATCGCCAGGTGAA 59.500 45.455 6.84 0.00 31.55 3.18
3597 3936 2.107366 TCACATTAGATCGCCAGGTGA 58.893 47.619 4.80 4.80 0.00 4.02
3598 3937 2.602257 TCACATTAGATCGCCAGGTG 57.398 50.000 0.00 0.00 0.00 4.00
3599 3938 3.393089 GATCACATTAGATCGCCAGGT 57.607 47.619 0.00 0.00 35.52 4.00
3606 3945 6.199908 GTGCCTATATGCGATCACATTAGATC 59.800 42.308 0.75 0.00 40.76 2.75
3607 3946 6.045318 GTGCCTATATGCGATCACATTAGAT 58.955 40.000 0.75 0.00 0.00 1.98
3608 3947 5.185828 AGTGCCTATATGCGATCACATTAGA 59.814 40.000 0.75 0.00 0.00 2.10
3609 3948 5.414360 AGTGCCTATATGCGATCACATTAG 58.586 41.667 0.75 4.31 0.00 1.73
3610 3949 5.405935 AGTGCCTATATGCGATCACATTA 57.594 39.130 0.75 0.00 0.00 1.90
3611 3950 4.277515 AGTGCCTATATGCGATCACATT 57.722 40.909 0.75 0.00 0.00 2.71
3612 3951 3.969287 AGTGCCTATATGCGATCACAT 57.031 42.857 1.21 1.21 0.00 3.21
3613 3952 3.751479 AAGTGCCTATATGCGATCACA 57.249 42.857 0.00 0.00 0.00 3.58
3614 3953 6.727824 AATTAAGTGCCTATATGCGATCAC 57.272 37.500 0.00 0.00 0.00 3.06
3615 3954 7.744087 AAAATTAAGTGCCTATATGCGATCA 57.256 32.000 0.00 0.00 0.00 2.92
3616 3955 7.538678 CCAAAAATTAAGTGCCTATATGCGATC 59.461 37.037 0.00 0.00 0.00 3.69
3617 3956 7.230510 TCCAAAAATTAAGTGCCTATATGCGAT 59.769 33.333 0.00 0.00 0.00 4.58
3618 3957 6.544197 TCCAAAAATTAAGTGCCTATATGCGA 59.456 34.615 0.00 0.00 0.00 5.10
3619 3958 6.636850 GTCCAAAAATTAAGTGCCTATATGCG 59.363 38.462 0.00 0.00 0.00 4.73
3620 3959 6.636850 CGTCCAAAAATTAAGTGCCTATATGC 59.363 38.462 0.00 0.00 0.00 3.14
3621 3960 6.636850 GCGTCCAAAAATTAAGTGCCTATATG 59.363 38.462 0.00 0.00 0.00 1.78
3622 3961 6.546034 AGCGTCCAAAAATTAAGTGCCTATAT 59.454 34.615 0.00 0.00 0.00 0.86
3623 3962 5.883673 AGCGTCCAAAAATTAAGTGCCTATA 59.116 36.000 0.00 0.00 0.00 1.31
3624 3963 4.705023 AGCGTCCAAAAATTAAGTGCCTAT 59.295 37.500 0.00 0.00 0.00 2.57
3625 3964 4.076394 AGCGTCCAAAAATTAAGTGCCTA 58.924 39.130 0.00 0.00 0.00 3.93
3626 3965 2.890945 AGCGTCCAAAAATTAAGTGCCT 59.109 40.909 0.00 0.00 0.00 4.75
3627 3966 3.297830 AGCGTCCAAAAATTAAGTGCC 57.702 42.857 0.00 0.00 0.00 5.01
3628 3967 5.043189 ACTAGCGTCCAAAAATTAAGTGC 57.957 39.130 0.00 0.00 0.00 4.40
3629 3968 8.116753 CAGATACTAGCGTCCAAAAATTAAGTG 58.883 37.037 0.00 0.00 0.00 3.16
3630 3969 7.280205 CCAGATACTAGCGTCCAAAAATTAAGT 59.720 37.037 0.00 0.00 0.00 2.24
3631 3970 7.254795 CCCAGATACTAGCGTCCAAAAATTAAG 60.255 40.741 0.00 0.00 0.00 1.85
3632 3971 6.540914 CCCAGATACTAGCGTCCAAAAATTAA 59.459 38.462 0.00 0.00 0.00 1.40
3633 3972 6.053005 CCCAGATACTAGCGTCCAAAAATTA 58.947 40.000 0.00 0.00 0.00 1.40
3634 3973 4.881850 CCCAGATACTAGCGTCCAAAAATT 59.118 41.667 0.00 0.00 0.00 1.82
3635 3974 4.080526 ACCCAGATACTAGCGTCCAAAAAT 60.081 41.667 0.00 0.00 0.00 1.82
3636 3975 3.262405 ACCCAGATACTAGCGTCCAAAAA 59.738 43.478 0.00 0.00 0.00 1.94
3637 3976 2.835764 ACCCAGATACTAGCGTCCAAAA 59.164 45.455 0.00 0.00 0.00 2.44
3638 3977 2.167693 CACCCAGATACTAGCGTCCAAA 59.832 50.000 0.00 0.00 0.00 3.28
3639 3978 1.754803 CACCCAGATACTAGCGTCCAA 59.245 52.381 0.00 0.00 0.00 3.53
3640 3979 1.399714 CACCCAGATACTAGCGTCCA 58.600 55.000 0.00 0.00 0.00 4.02
3641 3980 0.674534 CCACCCAGATACTAGCGTCC 59.325 60.000 0.00 0.00 0.00 4.79
3642 3981 1.400737 ACCACCCAGATACTAGCGTC 58.599 55.000 0.00 0.00 0.00 5.19
3643 3982 1.861982 AACCACCCAGATACTAGCGT 58.138 50.000 0.00 0.00 0.00 5.07
3644 3983 2.431057 AGAAACCACCCAGATACTAGCG 59.569 50.000 0.00 0.00 0.00 4.26
3645 3984 5.810080 ATAGAAACCACCCAGATACTAGC 57.190 43.478 0.00 0.00 0.00 3.42
3646 3985 6.437793 CCCTATAGAAACCACCCAGATACTAG 59.562 46.154 0.00 0.00 0.00 2.57
3647 3986 6.105139 TCCCTATAGAAACCACCCAGATACTA 59.895 42.308 0.00 0.00 0.00 1.82
3648 3987 5.102783 TCCCTATAGAAACCACCCAGATACT 60.103 44.000 0.00 0.00 0.00 2.12
3649 3988 5.152934 TCCCTATAGAAACCACCCAGATAC 58.847 45.833 0.00 0.00 0.00 2.24
3650 3989 5.403512 CTCCCTATAGAAACCACCCAGATA 58.596 45.833 0.00 0.00 0.00 1.98
3651 3990 4.235372 CTCCCTATAGAAACCACCCAGAT 58.765 47.826 0.00 0.00 0.00 2.90
3652 3991 3.654273 CTCCCTATAGAAACCACCCAGA 58.346 50.000 0.00 0.00 0.00 3.86
3653 3992 2.104963 GCTCCCTATAGAAACCACCCAG 59.895 54.545 0.00 0.00 0.00 4.45
3654 3993 2.124411 GCTCCCTATAGAAACCACCCA 58.876 52.381 0.00 0.00 0.00 4.51
3655 3994 2.369203 GAGCTCCCTATAGAAACCACCC 59.631 54.545 0.87 0.00 0.00 4.61
3656 3995 2.369203 GGAGCTCCCTATAGAAACCACC 59.631 54.545 23.19 0.00 0.00 4.61
3657 3996 3.310193 AGGAGCTCCCTATAGAAACCAC 58.690 50.000 29.54 0.00 45.48 4.16
3658 3997 3.708236 AGGAGCTCCCTATAGAAACCA 57.292 47.619 29.54 0.00 45.48 3.67
3659 3998 6.689663 AATTAGGAGCTCCCTATAGAAACC 57.310 41.667 29.54 0.00 46.44 3.27
3660 3999 7.324935 GCTAATTAGGAGCTCCCTATAGAAAC 58.675 42.308 29.54 7.99 46.44 2.78
3661 4000 6.153000 CGCTAATTAGGAGCTCCCTATAGAAA 59.847 42.308 29.54 12.17 46.44 2.52
3662 4001 5.652891 CGCTAATTAGGAGCTCCCTATAGAA 59.347 44.000 29.54 13.71 46.44 2.10
3663 4002 5.194432 CGCTAATTAGGAGCTCCCTATAGA 58.806 45.833 29.54 12.67 46.44 1.98
3664 4003 4.202070 GCGCTAATTAGGAGCTCCCTATAG 60.202 50.000 29.54 23.79 46.44 1.31
3665 4004 3.700038 GCGCTAATTAGGAGCTCCCTATA 59.300 47.826 29.54 12.70 46.44 1.31
3666 4005 2.498078 GCGCTAATTAGGAGCTCCCTAT 59.502 50.000 29.54 19.21 46.44 2.57
3667 4006 1.893801 GCGCTAATTAGGAGCTCCCTA 59.106 52.381 29.54 17.71 45.48 3.53
3669 4008 0.320858 GGCGCTAATTAGGAGCTCCC 60.321 60.000 29.54 10.94 38.61 4.30
3670 4009 0.682292 AGGCGCTAATTAGGAGCTCC 59.318 55.000 26.22 26.22 43.78 4.70
3671 4010 2.535012 AAGGCGCTAATTAGGAGCTC 57.465 50.000 14.28 4.71 37.81 4.09
3672 4011 3.388350 ACTTAAGGCGCTAATTAGGAGCT 59.612 43.478 14.28 0.00 37.81 4.09
3673 4012 3.495001 CACTTAAGGCGCTAATTAGGAGC 59.505 47.826 14.28 8.06 36.54 4.70
3674 4013 3.495001 GCACTTAAGGCGCTAATTAGGAG 59.505 47.826 14.28 5.23 0.00 3.69
3675 4014 3.463944 GCACTTAAGGCGCTAATTAGGA 58.536 45.455 14.28 0.00 0.00 2.94
3676 4015 2.548480 GGCACTTAAGGCGCTAATTAGG 59.452 50.000 14.28 7.67 0.00 2.69
3677 4016 3.002348 GTGGCACTTAAGGCGCTAATTAG 59.998 47.826 11.13 8.20 40.92 1.73
3678 4017 2.940410 GTGGCACTTAAGGCGCTAATTA 59.060 45.455 11.13 1.47 40.92 1.40
3679 4018 1.743394 GTGGCACTTAAGGCGCTAATT 59.257 47.619 11.13 2.56 40.92 1.40
3680 4019 1.379527 GTGGCACTTAAGGCGCTAAT 58.620 50.000 11.13 0.00 40.92 1.73
3681 4020 2.849081 GTGGCACTTAAGGCGCTAA 58.151 52.632 11.13 0.00 40.92 3.09
3682 4021 4.609995 GTGGCACTTAAGGCGCTA 57.390 55.556 11.13 9.45 40.92 4.26
3684 4023 1.210155 CAAGTGGCACTTAAGGCGC 59.790 57.895 30.72 8.91 44.03 6.53
3685 4024 0.605319 TCCAAGTGGCACTTAAGGCG 60.605 55.000 30.72 18.33 36.03 5.52
3686 4025 1.168714 CTCCAAGTGGCACTTAAGGC 58.831 55.000 30.72 7.36 36.03 4.35
3687 4026 2.859165 TCTCCAAGTGGCACTTAAGG 57.141 50.000 30.72 26.88 36.03 2.69
3688 4027 3.253432 GGTTTCTCCAAGTGGCACTTAAG 59.747 47.826 30.72 27.37 36.03 1.85
3689 4028 3.219281 GGTTTCTCCAAGTGGCACTTAA 58.781 45.455 30.72 19.18 36.03 1.85
3690 4029 2.173782 TGGTTTCTCCAAGTGGCACTTA 59.826 45.455 30.72 16.71 44.12 2.24
3691 4030 1.064017 TGGTTTCTCCAAGTGGCACTT 60.064 47.619 26.54 26.54 44.12 3.16
3692 4031 0.550914 TGGTTTCTCCAAGTGGCACT 59.449 50.000 15.88 15.88 44.12 4.40
3693 4032 0.954452 CTGGTTTCTCCAAGTGGCAC 59.046 55.000 10.29 10.29 46.59 5.01
3694 4033 0.823356 GCTGGTTTCTCCAAGTGGCA 60.823 55.000 0.00 0.00 46.59 4.92
3695 4034 1.856265 CGCTGGTTTCTCCAAGTGGC 61.856 60.000 0.00 0.00 46.59 5.01
3696 4035 1.856265 GCGCTGGTTTCTCCAAGTGG 61.856 60.000 0.00 0.00 46.59 4.00
3697 4036 1.576421 GCGCTGGTTTCTCCAAGTG 59.424 57.895 0.00 0.00 46.59 3.16
3698 4037 1.600916 GGCGCTGGTTTCTCCAAGT 60.601 57.895 7.64 0.00 46.59 3.16
3699 4038 2.335712 GGGCGCTGGTTTCTCCAAG 61.336 63.158 7.64 0.00 46.59 3.61
3700 4039 2.282180 GGGCGCTGGTTTCTCCAA 60.282 61.111 7.64 0.00 46.59 3.53
3701 4040 3.565214 TGGGCGCTGGTTTCTCCA 61.565 61.111 7.64 0.00 45.01 3.86
3702 4041 3.056328 GTGGGCGCTGGTTTCTCC 61.056 66.667 7.64 0.00 0.00 3.71
3703 4042 2.281484 TGTGGGCGCTGGTTTCTC 60.281 61.111 7.64 0.00 0.00 2.87
3704 4043 2.281761 CTGTGGGCGCTGGTTTCT 60.282 61.111 7.64 0.00 0.00 2.52
3705 4044 4.043200 GCTGTGGGCGCTGGTTTC 62.043 66.667 7.64 0.00 0.00 2.78
3735 4074 0.104120 GATGTTTAAATGGGCCGCCC 59.896 55.000 22.81 22.81 45.71 6.13
3736 4075 0.820871 TGATGTTTAAATGGGCCGCC 59.179 50.000 0.00 0.00 0.00 6.13
3737 4076 1.476488 AGTGATGTTTAAATGGGCCGC 59.524 47.619 0.00 0.00 0.00 6.53
3738 4077 2.099098 GGAGTGATGTTTAAATGGGCCG 59.901 50.000 0.00 0.00 0.00 6.13
3739 4078 2.430694 GGGAGTGATGTTTAAATGGGCC 59.569 50.000 0.00 0.00 0.00 5.80
3740 4079 3.365472 AGGGAGTGATGTTTAAATGGGC 58.635 45.455 0.00 0.00 0.00 5.36
3741 4080 4.399303 GTGAGGGAGTGATGTTTAAATGGG 59.601 45.833 0.00 0.00 0.00 4.00
3742 4081 4.399303 GGTGAGGGAGTGATGTTTAAATGG 59.601 45.833 0.00 0.00 0.00 3.16
3743 4082 4.399303 GGGTGAGGGAGTGATGTTTAAATG 59.601 45.833 0.00 0.00 0.00 2.32
3744 4083 4.292306 AGGGTGAGGGAGTGATGTTTAAAT 59.708 41.667 0.00 0.00 0.00 1.40
3745 4084 3.655777 AGGGTGAGGGAGTGATGTTTAAA 59.344 43.478 0.00 0.00 0.00 1.52
3746 4085 3.256704 AGGGTGAGGGAGTGATGTTTAA 58.743 45.455 0.00 0.00 0.00 1.52
3747 4086 2.838202 GAGGGTGAGGGAGTGATGTTTA 59.162 50.000 0.00 0.00 0.00 2.01
3748 4087 1.630878 GAGGGTGAGGGAGTGATGTTT 59.369 52.381 0.00 0.00 0.00 2.83
3749 4088 1.203364 AGAGGGTGAGGGAGTGATGTT 60.203 52.381 0.00 0.00 0.00 2.71
3750 4089 0.415429 AGAGGGTGAGGGAGTGATGT 59.585 55.000 0.00 0.00 0.00 3.06
3751 4090 1.484240 GAAGAGGGTGAGGGAGTGATG 59.516 57.143 0.00 0.00 0.00 3.07
3752 4091 1.872773 GAAGAGGGTGAGGGAGTGAT 58.127 55.000 0.00 0.00 0.00 3.06
3753 4092 0.612174 CGAAGAGGGTGAGGGAGTGA 60.612 60.000 0.00 0.00 0.00 3.41
3754 4093 1.893786 CGAAGAGGGTGAGGGAGTG 59.106 63.158 0.00 0.00 0.00 3.51
3755 4094 1.985116 GCGAAGAGGGTGAGGGAGT 60.985 63.158 0.00 0.00 0.00 3.85
3756 4095 0.395862 TAGCGAAGAGGGTGAGGGAG 60.396 60.000 0.00 0.00 0.00 4.30
3757 4096 0.040646 TTAGCGAAGAGGGTGAGGGA 59.959 55.000 0.00 0.00 0.00 4.20
3758 4097 0.461961 CTTAGCGAAGAGGGTGAGGG 59.538 60.000 0.00 0.00 34.25 4.30
3759 4098 1.187087 ACTTAGCGAAGAGGGTGAGG 58.813 55.000 13.94 0.00 36.45 3.86
3760 4099 2.732597 CGAACTTAGCGAAGAGGGTGAG 60.733 54.545 13.94 0.00 36.45 3.51
3761 4100 1.201647 CGAACTTAGCGAAGAGGGTGA 59.798 52.381 13.94 0.00 36.45 4.02
3762 4101 1.630148 CGAACTTAGCGAAGAGGGTG 58.370 55.000 13.94 0.00 36.45 4.61
3763 4102 0.108756 GCGAACTTAGCGAAGAGGGT 60.109 55.000 13.94 0.00 36.45 4.34
3764 4103 0.173708 AGCGAACTTAGCGAAGAGGG 59.826 55.000 13.94 2.81 40.04 4.30
3765 4104 1.551145 GAGCGAACTTAGCGAAGAGG 58.449 55.000 13.94 3.15 40.04 3.69
3766 4105 1.184349 CGAGCGAACTTAGCGAAGAG 58.816 55.000 13.94 5.49 40.04 2.85
3767 4106 0.797249 GCGAGCGAACTTAGCGAAGA 60.797 55.000 13.94 0.00 40.04 2.87
3768 4107 0.798771 AGCGAGCGAACTTAGCGAAG 60.799 55.000 4.88 4.88 40.04 3.79
3769 4108 0.797249 GAGCGAGCGAACTTAGCGAA 60.797 55.000 0.00 0.00 40.04 4.70
3770 4109 1.226323 GAGCGAGCGAACTTAGCGA 60.226 57.895 0.00 0.00 40.04 4.93
3771 4110 0.027716 TAGAGCGAGCGAACTTAGCG 59.972 55.000 0.00 0.00 40.04 4.26
3772 4111 1.468895 GTAGAGCGAGCGAACTTAGC 58.531 55.000 0.00 0.00 0.00 3.09
3773 4112 1.400846 TGGTAGAGCGAGCGAACTTAG 59.599 52.381 0.00 0.00 0.00 2.18
3774 4113 1.456296 TGGTAGAGCGAGCGAACTTA 58.544 50.000 0.00 0.00 0.00 2.24
3775 4114 0.601558 TTGGTAGAGCGAGCGAACTT 59.398 50.000 0.00 0.00 0.00 2.66
3776 4115 0.601558 TTTGGTAGAGCGAGCGAACT 59.398 50.000 0.00 0.00 0.00 3.01
3777 4116 1.641577 ATTTGGTAGAGCGAGCGAAC 58.358 50.000 0.00 0.00 0.00 3.95
3778 4117 3.513680 TTATTTGGTAGAGCGAGCGAA 57.486 42.857 0.00 0.00 0.00 4.70
3779 4118 3.067601 TGATTATTTGGTAGAGCGAGCGA 59.932 43.478 0.00 0.00 0.00 4.93
3780 4119 3.381045 TGATTATTTGGTAGAGCGAGCG 58.619 45.455 0.00 0.00 0.00 5.03
3781 4120 4.991056 TGATGATTATTTGGTAGAGCGAGC 59.009 41.667 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.