>input_sequence_43190
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-----------------------------------------------------------------------------CGA
GAAAGCGAGAGCGTAGCAAGAAGGTGGCATCATGGCGACGGCGGTGCAGTGGCCGGTGATGGTGGTGGTGGTGATGATGG
GGGCGGTGATGGCGGCGCGCGTGGGGGCGGACATGGACGCGGACCGGAGCGAGTGCGCGGAGCAGCTGGTGGGGTTGGCG
CCGTGCCTGCAGTACGTGCAGGGGCAGGCGCGGTCGCCGGCGCCGGACTGCTGCGGCGGGCTGAGCCAGGTGCTGGACAA
GAGCCCCAAGTGCCTGTGCGTGCTGGTCAAGGACAAGGACGACCCCAACCTGGGCATCAAGATCAACGCCTCCCTCGCGC
TCGCCCTCCCCTCCGCCTGCCGCAACACCAAGGCCAACGTCTCCCACTGCCCAGGTACGTCTCCCTCCTCTACGGCTCTA
CCTACCTCCC-------------CACATGCATATCATATCACCGACCTCGTCGCCGACCATCC--------CGCCGCCGT
GTCACGCTCCACGGCACAAATGGCATACGTCTCGTGGCTGTATTTTGGAGGGACGTCTCGTGCAGGC-TAGCTATAGATG
CCCTGTGGCTTGTTCGGTCTGGCCCGTGACAGGGCCGGTCGCATCACGACTTGGACGCCACTGGCACCCGTCGACGTCCC
AAATTACTTCCCTTTCTTTACAGAATCCGGCACACTGCAGGCGCCAACCAACCTATACAGCAAGGCTGTCGATCTATTAT
GGGAGCCCGTTTCGTTTCTTCA-TTTGTACTGA-----CATGAACTGAACTACTGAAGCACTACTGACTGTTGGCTAT--
----------ACTT--------------TATGTG-TGCAGAGCTGCTGCACCTCCCTCCGAACTCCAAGGACGCCGCCAT
CTTCAGCCCCGGCGGCGACAAGGGCTCCGCTGCAGCTCTAGGTGACTGAGCCATCCCGTTCCCCACCTCCTCTTCTACCA
GACTCGTAGTTTCAAATTGCGGTTTGTTCAAAACTGCGACACTTATTATGGATGAGAGGTTGCACCACTGATTCATTAGC
ACTGTGAAAACTAAGT----TACG--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCGAGCGTAACTCGCCGAAAGATGTTTGAACCATA
GGACCATAGCCCA------TGTGCTTGTTACCATCAATGGCGCTTTTCACAGACCTTTTCCCTTGCCGTAACGTACGTGT
GTCTGGAAATTAATCAAGCCGCCTGCA---------------ACTCATGTCCCTCCGTAGTCCTGCTGCCTGTCACTCTG
TC--------GATCTAACAATAACAATCACTGGTTTCGCTTTCCTCGCAGCCAAGGACAACACGGCGTCGACGGCCAACT
CCCGCGCGCAGCAGGCGGCCAGCGCCGGCACCGCCTCCTCGACGGCGACCGCCGGCGTCGCACTGGCGGCGTTGCTCGCC
GGCTACCTTGCGCTGCTCCTGCCCGCTGACTTCCTGGCCGCCGCCTCCTCCTTCTAGTCCATCTCCGTACGTGCGCGTCT
GTCTCC-TCCCCCCTACGGCGCTACCGAAGATCGATCAGGAGCAGGGGAGCCAGGAACCAGTGACTCTGTTTGGGGGAAT
GAAATGCCTCAAGTAGGATCGATCATGCATGTTGTAGTATGTGACAGAGATGG--------TAGTGGTGGTAGTGGTTGG
TTTGTTTTGGTGCTGTATTGAACTCTTATGTTTTCGCTGTATGGA--T--GACGCAATAATTCCACACTTACGGATGCGG
CTATGGATGATGTGTCGACCTGACCTTTGCTTTTCGTTGATGTTTGTGAGAAAGCGCCTGTGATTTGGTGAGGCACT---
------TGATCCATCGATGGAATCAAGCTTTTCGTTCTGATGATGGTCGTTGGGTTCGGGGCTTATTTTCTACTCCCTCC
GATCCATAATTATA------------------------------------------------------------------
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----------------------------------------------------------------
>chr4A_1_TraesCS4A01G021300
AGTAGTTCCGTTTGCCGAATTGGACACGTGGCATCCTGCATCTATCCCAACACTCGAGCCTCATCACGTCTCCTGTTGCC
GCTCCATTTTTCTAGGTATCTCTTGTTGCTATGCATCAACATTGTTTATGTCATCTTGCTCTTTAACTCCTCTGCTAAGA
AGTGAGAG-CCTTACTGAAAAGGAGAGAGGGAAGTCAGTCAATTTTCCACCCAGGGGAACTTGGTTACAGTAACAAGATC
CAACAGCAACATGA----------------------GGCACAATAATTCCTCTGCTTGGTGTTGGTGGCAGGCAGGCAGG
CAGGCTCGTTCGCAGCGCTGCAGGCCATCCACATGGAGGTAGATTCAGAGTTCAGACG----GGCTTGAGTGTGCGACTG
CGACACAGTTGCATCTGCTAGCATGAATGCCGGAGTTATTGGCTGCTGCTGCTCCCATCTACCCGCCCCGCATGTCGTCA
AGAAATCAAGTGCACCGGGTCCCTGGCCGGCCAGCCGGAACGAGGAGATGGTGGCGAGACCACGGCGCCGATCGAGCGAG
CGGTTAAAACCTTACAGTCAGTCACAGTTCTCACGTTTCTGCCACTTTTCCTGAATGTGCATGTTCGAACACGGCAAGGC
TCGCTTCTCTCCTGGGAATCGCTGTTCGACATGCGTGCGTGTGAGCCCGTCTTTACCGTTTTCCCACTGCAACGCATGCA
AACCCTAGTAGGTGCTCCTGCGGCGTGTAGAGAGCC------GTCGATCAGCCACGCACGCACGCACGCATCAAAGTGCG
GAGCAGCGTGCCTGCCCGTGTACGTACGTGGTGCGATG---CGGGCACGTCAAGATGTCTAGTTCACGCCTTCGCCGCCT
TCCCCCACCCCCGCCCGCTATAACAGTTCACCCC-GGCCTCACCAACCCCCCACCCCAGCTCACTCACTCACTCACTCTC
ACACACCCACTTTACTTCCTCCACTCTTCAGGTCACATCGGCAGCTGCTAGCCAAGTAGCCAAGCCAACGAAGAGATCGA
GAAAGCGAGAGCGTAGCAAGAAGGTGGCATCATGGCGACGGCGGTGCAGTGGCCGGTGATGGTGGTGGTGGTGATGATGG
GGGCGGTGATGGCGGCGCGCGTGGGGGCGGACATGGACGCGGACCGGAGCGAGTGCGCGGAGCAGCTGGTGGGGTTGGCG
CCGTGCCTGCAGTACGTGCAGGGGCAGGCGCGGTCGCCGGCGCCGGACTGCTGCGGCGGGCTGAGCCAGGTGCTGGACAA
GAGCCCCAAGTGCCTGTGCGTGCTGGTCAAGGACAAGGACGACCCCAACCTGGGCATCAAGATCAACGCCTCCCTCGCGC
TCGCCCTCCCCTCCGCCTGCCGCAACACCAAGGCCAACGTCTCCCACTGCCCAGGTACGTCTCCCTCCTCTACGGCTCTA
CCTACCTCCC-------------CACATGCATATCATATCACCGACCTCGTCGCCGACCATCC--------CGCCGCCGT
GTCACGCTCCACGGCACAAATGGCATACGTCTCGTGGCTGTATTTTGGAGGGACGTCTCGTGCAGGC-TAGCTATAGATG
CCCTGTGGCTTGTTCGGTCTGGCCCGTGACAGGGCCGGTCGCATCACGACTTGGACGCCACTGGCACCCGTCGACGTCCC
AAATTACTTCCCTTTCTTTACAGAATCCGGCACACTGCAGGCGCCAACCAACCTATACAGCAAGGCTGTCGATCTATTAT
GGGAGCCCGTTTCGTTTCTTCA-TTTGTACTGA-----CATGAACTGAACTACTGAAGCACTACTGACTGTTGGCTAT--
----------ACTT--------------TATGTG-TGCAGAGCTGCTGCACCTCCCTCCGAACTCCAAGGACGCCGCCAT
CTTCAGCCCCGGCGGCGACAAGGGCTCCGCTGCAGCTCTAGGTGACTGAGCCATCCCGTTCCCCACCTCCTCTTCTACCA
GACTCGTAGTTTCAAATTGCGGTTTGTTCAAAACTGCGACACTTATTATGGATGAGAGGTTGCACCACTGATTCATTAGC
ACTGTGAAAACTAAGT----TACG--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCGAGCGTAACTCGCCGAAAGATGTTTGAACCATA
GGACCATAGCCCA------TGTGCTTGTTACCATCAATGGCGCTTTTCACAGACCTTTTCCCTTGCCGTAACGTACGTGT
GTCTGGAAATTAATCAAGCCGCCTGCA---------------ACTCATGTCCCTCCGTAGTCCTGCTGCCTGTCACTCTG
TC--------GATCTAACAATAACAATCACTGGTTTCGCTTTCCTCGCAGCCAAGGACAACACGGCGTCGACGGCCAACT
CCCGCGCGCAGCAGGCGGCCAGCGCCGGCACCGCCTCCTCGACGGCGACCGCCGGCGTCGCACTGGCGGCGTTGCTCGCC
GGCTACCTTGCGCTGCTCCTGCCCGCTGACTTCCTGGCCGCCGCCTCCTCCTTCTAGTCCATCTCCGTACGTGCGCGTCT
GTCTCC-TCCCCCCTACGGCGCTACCGAAGATCGATCAGGAGCAGGGGAGCCAGGAACCAGTGACTCTGTTTGGGGGAAT
GAAATGCCTCAAGTAGGATCGATCATGCATGTTGTAGTATGTGACAGAGATGG--------TAGTGGTGGTAGTGGTTGG
TTTGTTTTGGTGCTGTATTGAACTCTTATGTTTTCGCTGTATGGA--T--GACGCAATAATTCCACACTTACGGATGCGG
CTATGGATGATGTGTCGACCTGACCTTTGCTTTTCGTTGATGTTTGTGAGAAAGCGCCTGTGATTTGGTGAGGCACT---
------TGATCCATCGATGGAATCAAGCTTTTCGTTCTGATGATGGTCGTTGGGTTCGGGGCTTATTTTCTACTCCCTCC
GATCCATAATTATAATAAATAATTATAATAAATGTCGCAGCTTTGAACTAATTAAATTTAGCCTTCGATTAGAACTACAA
CAATTATTTTGG-ATCGGAGGGAGTAGTTTTTGTAGGGAGTAGTTTTTGTAGGTAAATACATTGACAGTTACTGAAATTG
AGCTCAAAGCACAGTACGGGTCACCGGACTTTGAAATACGCTCGTTACAGTTATCATATATAC-AAAGCAATC---ATAC
GGTCACCGACTCATCGTAGAGCAT----TTGCACTCTGTTGACCGGTTAAATAGTTTATGTAGCAAATATTGTAAAGGTC
CCATATGTCAGTGTGTAAAAGAAATAAATTAGCC-AAAAAAAAACTTCGGTGCGGAGAATCGGGTTAGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNACGTAAAGTTTCGTAGATGGTTAAGTAGGTCTAGCATTTTCGAGTCCTCACGGAGGTGTCGA
CGCGAGGTAGCCAGTTCACCTGGCGATCTAATGTGATCGCATATAGGCACTTAATTTTTGGACGCTAGTATCTGGGTGGT
TTCTATAGGGAGCTCCTAATTAGCGCCTTAAGTGCCACTTGGAGAAACCAGCGCCCACAGCGCCACCTTCGCGGGGCGGC
CCATTTAAACATCACTCCCTCACCCTCTTCGCTAAGTTCGCTCGCTCTACCAAATAATCATCAA
>chr4B_1
AGTAGTTCCGTTTGCCAAATTTGACATGTGGCATCCTGTATCTATCCCAGCACGCGGGCCTCATCACGTCTCCAGTTGCC
ACTCCATTTTTCTAGGGATGTCTTGTTGCTATGCATCAACATTGTTTATGTGATCTTGCTCTTCAATACCTCTGCTCAGA
AGTGAGAGCCCTTACTGAAAAGGAGAGAGGGAAGGCAGTCAATTTTCCACCCAGGGTAACTTGGTTACAGTAACAAGATC
CAACAGCAACATGA----------------------GGCACAATAATTC-TCTGATTGGTGTTGGTGGCAC----GCAGG
CAGGCTCGTTCGCAGCGTTGCAGGCCATCCACATGGAGGTAGATTCAGAGTTCAGACG----GGCATGAGTGTGCGAGTG
CGACACAGTTGCATTTGCTAGCATGAATGCCGGAGTTATTGACTGCTGCTGCCCCCATCTACCCGGCCCGCATGTCGTCA
GGAAATCAAGTGCACCGGGTCCCTGGCCGGCCGGCCGGAACGAGGAGATGGCGGCGAGACCACGGCGCCGATCGAGCGAG
CGGTTAAAACCTTACGGTCAGTCACAGTTCTCACGTTTCTGGCAGCTTTCCTGGATGTGCATGTCCGATCACGGCAAGGC
TCGTTTCTCTCCTGGCAATCGCTGTTCGACATGCGTGCGTGTGAGCCCTTCTTTGCCATTTTCCCACTTCGACGCATGCG
AACTCTAGCAGGTGCTC-TGCAGCGCGTAGAGAGCCGGGCCTGCCGATCAGCCACGCACGCACGAACGCACCAAAGTGCG
GAGCAGCGTGCCTGCCCGCGTACGTACGTACGTGGTGCGACCGGGCACGTCACGATGTCTGGCTCACGCCTTCGCCGCCT
CCCCCCACCACCGCCCGCTATAACAGTTCACCCCCGACCTCACCAACCCCCCACCCCAGCTCACTCC------------C
ACACACCCACTCCACTTCCTCCACTCTTCAAGTCACATCGGCAGCTGCTTGCCAAGTAGCCAAGGCAAGGAAGTGATCGA
GGAAGAGGGAGCGAAGCGGCGTCCCTCATGGC-GGCGAAGGCGGTGCAGTGGCCGGTGATGGTGGTGGTGGTGATCAT--
-GGCCGTGATGGCGGCGCGCGTGGGGGCGGACATGGACGCGGACCGGAGCGAGTGCGCGGAGCAGCTGGTGGGGCTGGCG
CCGTGCCTGCAGTACGTGCAGGGGCAGGCACGGTCGCCGGCGCCGGACTGCTGCGGCGGGCTGAGCCAGGTGCTGGACAA
GAGCCCCAAGTGCCTGTGCGTGCTGGTCAAGGACAAGGACGACCCCAACCTGGGCATCAAGATCAACGCCTCCCTCGCGC
TCGCCCTCCCCTCCGCCTGCGGCAACACCAAGGCCAACGTCTCCCACTGCCCACGTACGTCTCCCTCCTATT--------
CCTACCTACC-------------TACATGCATAT-----GACCGACCTCGTCGCCGACCATCC--------CGCCGCCGT
TTCACGTTCCACAGCACAAATGGTGTACGTCTC-TGGCTGTATTTTGGACGGACGTATCGTGCAGGGTTAGCTAGAGATG
CCTTGTGGCTTGTTCGGTCCGGCCCGTGACAGGGTCGGCCGCATCACGACTTGGACGCCACAGGCACCCGTCGCCGTCCC
AAATTACTTCCCTTTCTTTACAAAACCCGGCACACT---GGCACCAACCA---TATACAGCTAGGCTGTCGATCTATTAT
GGGAGCTG---TTGTTTCTTCATTTTGTACTGGGATGGGATGAACTGAAGC-----------ACTGACTGTTGGCTAT--
----------ACTCATCTTGTGTGTGTGTGTGTG-TGCAGAGCTGCTGCACCTTCCTCCGAACTCTAAGGACGCCGCCAT
CTTCAGCCCCGGCGGCGACAAGGGCACCGCTGCAGCTCCAGGTGATTGAGCCATTCCGTTCCCCACCTCCTCTTCTACCA
GACTCGTAGTTTTAAATTGGGGTTTGTTCAAAACTGCGACACTTATTAGGGATTAAAGATGGTTCCATTGATTCATTAGC
ACTGTGAAAACTAGGT----TACGGGGGTGTTTGATTGTAAGGACTAGACTTTTTTTAGCCACAGGACTAAAGAAAAAAG
ACCCTCCAGAAAATGTTTTTGTAGTTTCTAAAGAAAAGAATTTCTCCTGTTTGCTTACACATAACTAAAAGGGACTTTTT
CTAGTCTAGTCCCTGTAACAACAGTGTAACCAAACAGGGCCTACATCCAGCGTAACTTCCCGAAAGATGTTTGAACCATA
G--------CCCATGTGTTTGTGTTTGTTGCCATCAATGGCGCTTTTCACATACTTTTTTCCTTGCCGTAACGTACGTGT
GTCCGGAAATTAATCAAGTCGGTTACTCATTGCTCCTGCAACACTGATGTCCCTCCGTAGTCCTGCTGTCTGTCACTCTG
TCTG-------ATGT---ACTAACAAGCACCGGTTTGGCTTTCCTCGCAGCCAAGGACAACACGGCGTCGACGGCCAACT
CCCGCGCGCAGCAGGCCACCAGCGCGGGCACCGCCTCCTCGACGGCAACCGCCGGCGTTGCACTGGCGGCGTTGCTCGCC
GGCTACCTTGCGCTGCTCCTGCCGGCGGACTTCCTGGCCACCGCCGCCTCCTTCTAGTCCATCT-CGTACGTGCGCGTCT
GTCTCCTTCCCCCCTACGGCGCTACCGAAGATCGATCAAGACCAGGGGAGTCAGGAACCAGTCACTGTGTTTGGGAGAAT
GAAATGCCTCAAGTAGGATCGATCATGCATGTTGTAGTATGTGACAGAGATGG--------TAGTGGTGGTAGTGGTTGG
TTTG--TTGGTGTTGTATTGAACTCTTATGTTTTCGCTCTATGGA--TATGACGCAATAATTCCACACTTACGGATGCAG
CTATGGATGACGTGTCGACCTGACCTTCGCTTTTCGTTGATGTTTGTGAGAA-GCGCCTGTGACGTGGTGGGGGCACCGA
GGCATTTGATAGATCCATCGCTTCAAGCTTTTCGTTCAAATGATGGTCGTTGGGTTCGGGGCTTATTTTCTACTCCCTCG
GACCTATAATCATAACAAG-------------CGTTGCAGTTTTA----AATTAAGTTTAGCCTCCGATCAAAACTGCGA
CAATTATTTTTGTATTGGAGGGAGTAGTTTCTTTTTTT-------------GGCAAATGCATTGGTAATCACTGAAATTG
AGTTTAAAGCATGATACGGGTCACCGAACTTTAGAATACGCTTGTTATGGTCATCAAATACATAAAAACGATGATTATAC
GGTCACCGA-----------------------------------------------------------------------
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----------------------------------------------------------------
>chr4D_1
AGTAGTTCCGTTTGCCAAATTGGACATGTGGCATCCCGTGTCTGTCCCAACACGCGAGCCTCATCACGTCTCCTGTTGCC
ACTCCATTTTTCTAGGGATGTCTTGTTGCTATGCATCAACATTGTTTATGTGATCTTGCTCTTTAACACCTCTGCTAAGA
AGTGAGAG-CCTTACTGAAAAGGAGAGAGGGAAGGCAGTCAATTT-CCACCCAGGGGAACTTGGTTACCAATAATACTAC
ACGTACAGGATGATTCATACAAAGAGTTACAGGGAGGGAACAATAAGTCCTCT---------------------------
---GCTCGTTCGCAGCGCTGCAGGCCATCCACATGGAGGTAGATTCAGAGTTCAGACGAGTGGGCATGAGTGTGCGACAG
CGACACAGTTGCATTTGCTAGCATGAATGCCGGAGTTATTGGCTGCTGCTGCCTCCATCTACCCGGCCCGCATGTCGTCA
AGAAATCAAGTGCACCGGGTCCCTGGCCGGCCGGCCGGAACGAGGAGATCACGGCGAGGCCACGGCGCCGATAAATCGAG
CGGTTGAAACCTTACAGTCAGTCACAGTTCTCACGTTTCTGGCACCTTTCCTGAATGTGCATGTTCGAACACGGCAAGGC
TCGTTTCTCTCCTGGGAATCGCTGTTCGACATGCGTGCGTGTGAGCCCTTCT----------------------------
-------------------GCAGCGCGTAGAGAGCCGGGCCTGTCGATCAGCCACGCACGCACGCA----TCAAAGTGCG
GAGCATCGTGCCTGCCCGCGTACGTACGTACGTGGTGCGACCGGGCACGTCACGATGTCTGGCTCACGCCTTCGCCGCCT
CCCCCCACCCCCGCCCGCTATAACAGTTCACCCCCGGCCTCACCAACCCCCCACCCCAGCTCACTCC------------C
ACACAGCCACTTTACTTCCTCCACTCTTCAAGTCACATCGGCAGCTGCTAGCCAAGTAGCCAAGGCAAGGAAGTGATCGA
GGAAGAGGGAGCGAAGCGGCGTCCCTCATGGC-GGCGAAGGCGGTGCAGTGGCCGGTGATGGTGGTGGTGGTGATGATGG
GGGCGGCGGTGGCTA---GCGTGGGAGCGGACATGGACGCGGACCGGAGCGAGTGCGCAGAGCAGCTGGTGGGGCTGGCG
CCGTGTCTGCAGTACGTGCAGGGGCAGGCGCGGTCGCCGGCGCCGGACTGCTGCGGCGGGCTGAGCCAGGTGCTGGACAA
GAGCCCCAAGTGCCTGTGCGTGCTGGTCAAGGACAAGGACGACCCCAACCTGGGCATCAAGATCAACGCCTCCCTCGCGC
TCGCCCTCCCCTCCGCCTGCGGCAACACCAAGGCCAACGTCTCCCACTGCCCACGTACGTCTCCCTCCTACT--------
CCTACCTACTACCTAGACCCTAGTACATGCATAT-----CACCGACCTCGTCGTCGACCAACCCCCCGCCGCGCCGTCGT
GTCACGTTCCACAGCACAAATGGTATACGTCGCGTGGCTGTATTTTGGAGGGACGTCGCGTGCAGGGTTAGCTAGAGATG
CCTTGTGGCTTGTTCGGTCTGGCCCGTGACATGGCCGGCCGCATCACGACTTAGACGCCACTGGCACCCGTCGCCGTCCC
AAATTACTTCCCTTTCTTTACAAAACCCGGCACACT---GGCACCAACC----TATACAGCTAGGCTGTCGATCTATTAT
GGGAGCCCGTTTCGTTTCTTCATTTTGTACCGA-----GATGAACTGAACTACTGAAGCACTACTGACTATTGGCTAT--
----------ACTT--------------TGTGTG-TGCAGAGCTGCTGCACCTCCCTCCGAACTCCAAGGACGCCGCCAT
CTTCAGCCCCGGCGGCGACAAGGGCACCGCTGCAGCTCCAGGTGACTGAGCCTTCCGTTTCCTTAGCTCCACTCTTCTCC
TCCTG--------------------------------------------------------------TTGATTCATTAGC
ACGGTGAAAACTACGTACGGTACA--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCGAGCGTAACTCGGCGAAAGATGTTTGAACCATA
G--------CCCA------TGTGCTTGTTGCCATCAATGGCGCTTTTCACAGACCTTTTACCTTGCCGTAACGTACGTGT
GTCTGGAAATTAATCAAGCCGGTTACTCATTGCTCCTGCAACACTGATGTCCCTCCGTAGTCCTGCTGCCTGTCACTCTG
TC--------GATCT---AACAACAATCACCGGTTTCGCTTTCCTCGCAGCCAAGGACAACACGGCGTCGACGGCCAACT
CCCGCGCGCAGCAGGCGGCCAGCGCCGGCACCGCCTCCTCGACAGCGACCGCCGGCGTCGCACTGGCGGCGTTGCTCGCC
GGCTACCTTGCGCTACTCCTGCCCGCGGACTTCCTGGCCACCGCCGCCACCTTCTAGTCCATCTCCGTACGTGCGCGTCT
GTCTCC-TCCCCCCTATGGCGCCACCGAAGATCGATCAGGAGCAGGGGAGCCAGGAACCAGTGACTGTGTTTGGGAGAAT
GAAATGCCTCGAGTACGATCGATCATGCATGTTATAGTATGTGATAGAGATGGTAGTGGACTAGTGGTGGTAGTGGTTGG
TTTG--TTGGTGTTGTATTGAACCTATGT-TTTTCGCTGTATGGATAT--GACGCAATAATTCCACACTTACGGATGCAG
CTATGGATGACGTATCGACCTGACCTTTGCTTTCCGTTGATGTTTGTGAGAAAGCGCCTGTGATTTGGTGAGGCACT-GA
GGCACTTGATCGATCGATCGCTTCAAGCTTTTCGTTCTGATGATGGTCGTTGGGTTCGGGGCTTATTTTCTACTCCCTCC
GATCCATAATCATAATAAG-------------TGGCGTAGCTTTGAACTAATTAAGTTTAGCCTTCGATTAAAACTACGA
CAATTATTTTGG-ATCAGAGGGAGTAGTTTTTTC----------------AGGTAGATACACTAACAGTCACTGAAATTG
AGCTCAAAGTATAGTACGGGTCACCGGACTTCGGAATACGC--------GTCATCATATACAC-AAAGCGATGATTATAC
CGTCACTGACTCATCGTAGAGCATGGTATTGCACTCTGTTGACCGGTTAAATAGTTTATGTAGCAAATATTGCAAGGGTT
CCACCCGTCAGTGTGTGAAAGAAATAAATTAGCGGAAAAAAAAACTTCGGTGCAGAGAATC-------------------
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>chr4A_1650
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----------------------------GGCACACTGTAGGCACCAACC----TATACAGTTAGGCTGTCGATCTATTGT
GGGAGCCCGCTTCGTTTCTTCATTTTGTACTAA-----GATGAACTGAAGC-----------ACTGACTGTTGGCTAATG
GCTGTACTCAACTT--------------TGTGTTTTGCAGAGATGCTGCATCTCCCTCCGAACTCCAAGGACGCCGCCAT
CTTGAGCCCCGGTGGCGACAAGGGCACCGCTGCAGCTCCAGGTGACTGAGCCTTCCGTTTCCTTAGCTCCACTCTTCTCC
TCCTG--------------------------------------------------------------TTGATTCATTAGC
ACAGTGAAAACTACGTATGATACA--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCGAGCATAACT-GGCGAAAGATGGTTGAACCATA
G--------CCCA------TGTGCTTGTTGCCATCAATGGCGCTTTTCACAGACTTTTTCCCTTGCCGTAATGTACGTGT
GTCTGGAAATTAATCAAGCCGGTTACTCATTGCTCCTGCAACACTGATGTCCCTCTGTAGTTTTGCTGTCTGTCACTCTG
TCTGATCTCTGATGT---ACTAACAAGCACCGGTTTCGCTTTCCTCGCAGCCAAGGACAACACGGCGTCCACGGCCAACT
CCCGTGCGCAGCAGGCCGCCAGCGCCGGCACCGCCTCCTCGACGGCGACCGCCGGCGTCGCACTGACGGCGTTGCTCGCC
GGCTACCTTGCGCTGCTCCTACCTGCGGACTTCCTGGCGACCGCCGCCTCCTTCTAGTCCATCTCCGAACGTG-------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr5B_1650
--------------------------------------------------------------------------------
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----------------------------GGCACACTACAGGCACCAACC----TATACAGCTAAGCTATCGATCTATTGT
GGGAGCCCGTTTTGTTTCTTCATTTTGTACTGA-----GATGAACTGAAGC-----------ACTGACTGTTGGCTAATG
GCTGTACTCAACTT--------------TGTGTTTTGCAGAGCTGCTGCATCTCCCTCCGAACTCCAAGGACGCCGCCAT
CTTCAGCCCCGGTGGCGACAAGGGCACCGCTGCAGCTCCAGGTGAATGAGCCTTCTATTTCCTTAGCTCCACTCTTCTCC
TCCTG--------------------------------------------------------------TTGATTCATTAGC
ACGGTGAAAACTACGTACGGTACA--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCAAGCGTAACTCGGCGAAAGATGTTTGAACCATA
G--------CCCA------TGTGCTTGTTGCCATCAATGGCGCTTTTCACAGACTTTTTCCCTTGCCGTAACGTACGTGT
GTCTGGAAATTAATCAAGCCGGTTACTCATTGCTCCTGCAACATTGATGTCCCTCCGTAGTCCTGATGTCCGTCACTCTG
TCTGATCTCTGATGT---ACTAACAAGCACCGGTTTCACTTTCCTCGCAGCCAATGACAACACGGCGTCGACGGCCAACT
CCCGCGCGCAGCAGGCCGCCAGCACCGGCACCGCCTCCTCGACGGCGACCGCCAGCGTCGCACTGACGGCGTTGCTCGCC
GGCTACCTTGCGCTGCTCCTACCCGCGGACTTCCTGGCGACCGCCGCCTCCTTCTAGTCCATCTCCGAACATGC------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr2B_1650
--------------------------------------------------------------------------------
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----------------------------GGCACACTGCAGGCACCAACC----TATACAACTAGGCTGTCGATCTATTGT
GGGAGCCCGTTTCGTTTCTTCATTTTGTACTGA-----GATGAACTGAAGC-----------ACTGACTGTTGGCTAATG
GCTGTACTCAACTT--------------TGTGTTTTGCAGAGCTGCTGCATCTCCCTCCGAACTCCAAGGACGCCGCCAT
CTTCAGCCCCGGTGGCGACAAGGGCACCGCTGCAGCTCCAGGTGACTGTGCCTTCCGTTTCCTTAGCTCCACTCTTCTCC
TCCTG--------------------------------------------------------------TTGATTCATTAGC
ACGGTGAAAACTATGTACGGTACA--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCGAGCGTAACCCGGCGAAAGATGTTTGAACCATA
G--------CCCA------TGTGCTTGTTGCCATCAATGGCGCTTTTCACAGGCTTTTTCCCTTGCCGTAATGTACGTGT
GTCTGGAAATTAATCAAGCCGGTTACTCATTGCTCCTGCAACACTGATGTCCTTCCGTAGTCCTGTTGTCTGTCACTCTT
TCTGATCTCTGATGT---ACTAACAAGCACCGGTTTCGCTTTCCTCGCAGCCAAGGACAACACGGCGTCGACGGCCAACT
CCCGTGCGCAGCAGGCCGCCAGCGCCGGCACCGCCTCCTCGACGGCGACCGCCGGCGTCGCACTGACGGCGTTGCTCGCC
GGCTACCTTGCGCTGCTCCTAAGCGCGGACTTCCTGGCGACCGTCGCCTCCTTCTAGTCCATCTCCGAACATG-------
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----------------------------------------------------------------
>SNPs
----------------S---------S-----------S--------------S--------------------------
S---------------S--S-------------------------------S---------------S------------
----------------------------------S---------------------------------------------
------------------------------------------------------S---------------SSSSS-----
-----------------------------------------------------------------S--------------
--------------S-------------------------------------S------------S--------------
--------------------------------S------------------S----------------------------
-----------------------------------------S---S----------------------------------
---S--------------------------------------------S-----S--S----------S-S--------S
---S----S--------S---S---S------------------------------------------------------
------------------S----------SSSSS-SSS--------------S-------S-S-----------------
S-----------------------------------------------------------------SSSSSSSSSSSSS-
------------------------------S---------------------------------S---S----S------
-S---S-S-----S---SSSSSSSSSSSSSSSS-----S-----------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S--------------------------------S---------------S-SSSSSSSSS
-------S---------------S----------SSSSS-----------------------------------------
------S-----S----------S------------------------------------------S-------S-----
--S-----------------------------------S----------------------------------S------
----------------------S--S----------------S-------SSS--------S------------------
--------------------------------------S-----------------------------------------
-----------------------------S--------------------------------------------------
-------------------------S------------S-----------------------------------------
------------S------S----------------------------S----S-S--S-S-SS---S------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-SSSSSSSS--------------------S--------------------------------------------------
---------------------SS-S-S------------------S----------------------------------
---------------SSS------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S------------S-----S----------------------------------
------------------------------------------------------------------S--------S----
--------------------------------------------------------------------------------
----SS------S-----------------------------------------------------------------S-
----------S---------------------------------------------------------------------
-----------S------S-SS----------------------------------------------------------
----------S-------SSSSSSSSSSSSSS-----------------------S---------------S------S-
--------------------------------S-SSSSSSSSSSSSSSSS-------------------S----------
-----------S---------------------S--------S----SS--S--------S--------S--S-------
------------------------------------------------------------------------S--S---S
---SSS----------S----------------S-------------------S-------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_861
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CGGGCACGTCAAGATGTCTA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>reverse_2323
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ACCATAGCCCATGTGCTTGT----------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------
>forward_2068
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------TGGATGAGAGGTTGCACCAC------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------
>reverse_4110
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------CGCTAAGTTCGCTCGCTCTA---------------
