Multiple sequence alignment - TraesCS4A01G014900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G014900 chr4A 100.000 2363 0 0 1 2363 9456044 9458406 0.000000e+00 4364.0
1 TraesCS4A01G014900 chr4D 91.265 1099 72 13 558 1640 459311951 459310861 0.000000e+00 1476.0
2 TraesCS4A01G014900 chr4D 89.579 451 37 6 1918 2363 459310724 459310279 4.410000e-157 564.0
3 TraesCS4A01G014900 chr4D 85.647 425 51 7 90 507 459313499 459313078 2.790000e-119 438.0
4 TraesCS4A01G014900 chr4B 89.827 1042 65 18 698 1706 574007631 574006598 0.000000e+00 1299.0
5 TraesCS4A01G014900 chr3A 93.427 213 12 1 1709 1921 446482405 446482195 4.900000e-82 315.0
6 TraesCS4A01G014900 chr3A 84.615 91 4 2 1837 1917 61438836 61438746 5.410000e-12 82.4
7 TraesCS4A01G014900 chr3A 97.727 44 1 0 1873 1916 534124863 534124820 2.520000e-10 76.8
8 TraesCS4A01G014900 chr3A 100.000 37 0 0 1881 1917 469622207 469622243 4.210000e-08 69.4
9 TraesCS4A01G014900 chr3A 84.058 69 1 3 1859 1917 692183355 692183423 9.120000e-05 58.4
10 TraesCS4A01G014900 chr1A 88.106 227 13 5 1703 1917 530169966 530170190 8.380000e-65 257.0
11 TraesCS4A01G014900 chr5B 88.053 226 13 5 1705 1918 440262955 440262732 3.010000e-64 255.0
12 TraesCS4A01G014900 chr5B 91.489 188 13 3 1706 1891 537904124 537903938 3.010000e-64 255.0
13 TraesCS4A01G014900 chr5B 86.697 218 21 7 1709 1919 28808843 28809059 3.930000e-58 235.0
14 TraesCS4A01G014900 chr3B 87.168 226 17 4 1705 1920 614193897 614194120 1.810000e-61 246.0
15 TraesCS4A01G014900 chr2A 91.667 180 11 3 1709 1885 459445261 459445439 1.810000e-61 246.0
16 TraesCS4A01G014900 chr2A 95.833 48 2 0 1870 1917 680539918 680539871 7.000000e-11 78.7
17 TraesCS4A01G014900 chr1B 91.160 181 14 2 1709 1888 539469811 539469632 6.520000e-61 244.0
18 TraesCS4A01G014900 chr6A 89.894 188 15 3 1701 1885 560133600 560133414 3.040000e-59 239.0
19 TraesCS4A01G014900 chr6A 97.872 47 1 0 1870 1916 76434152 76434106 5.410000e-12 82.4
20 TraesCS4A01G014900 chr7A 97.727 44 1 0 1873 1916 50799916 50799873 2.520000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G014900 chr4A 9456044 9458406 2362 False 4364 4364 100.000000 1 2363 1 chr4A.!!$F1 2362
1 TraesCS4A01G014900 chr4D 459310279 459313499 3220 True 826 1476 88.830333 90 2363 3 chr4D.!!$R1 2273
2 TraesCS4A01G014900 chr4B 574006598 574007631 1033 True 1299 1299 89.827000 698 1706 1 chr4B.!!$R1 1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 226 0.172803 AACAGGCGACATAGACGGTC 59.827 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 2919 0.108615 CTGCTAACCGTGAGACCTGG 60.109 60.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.832520 TTTTTACATACACCATGAGCATGT 57.167 33.333 9.39 1.82 38.10 3.21
24 25 6.832520 TTTTACATACACCATGAGCATGTT 57.167 33.333 9.39 0.00 38.10 2.71
25 26 6.832520 TTTACATACACCATGAGCATGTTT 57.167 33.333 9.39 0.00 38.10 2.83
26 27 6.832520 TTACATACACCATGAGCATGTTTT 57.167 33.333 9.39 0.00 38.10 2.43
27 28 5.726980 ACATACACCATGAGCATGTTTTT 57.273 34.783 9.39 0.00 38.10 1.94
28 29 5.713025 ACATACACCATGAGCATGTTTTTC 58.287 37.500 9.39 0.00 38.10 2.29
29 30 5.243507 ACATACACCATGAGCATGTTTTTCA 59.756 36.000 9.39 0.00 38.10 2.69
30 31 3.981211 ACACCATGAGCATGTTTTTCAC 58.019 40.909 9.39 0.00 37.11 3.18
31 32 3.384146 ACACCATGAGCATGTTTTTCACA 59.616 39.130 9.39 0.00 40.71 3.58
32 33 4.141981 ACACCATGAGCATGTTTTTCACAA 60.142 37.500 9.39 0.00 39.50 3.33
33 34 4.809958 CACCATGAGCATGTTTTTCACAAA 59.190 37.500 9.39 0.00 39.50 2.83
34 35 5.467399 CACCATGAGCATGTTTTTCACAAAT 59.533 36.000 9.39 0.00 39.50 2.32
35 36 6.017770 CACCATGAGCATGTTTTTCACAAATT 60.018 34.615 9.39 0.00 39.50 1.82
36 37 7.171167 CACCATGAGCATGTTTTTCACAAATTA 59.829 33.333 9.39 0.00 39.50 1.40
37 38 7.385752 ACCATGAGCATGTTTTTCACAAATTAG 59.614 33.333 9.39 0.00 39.50 1.73
38 39 7.385752 CCATGAGCATGTTTTTCACAAATTAGT 59.614 33.333 9.39 0.00 39.50 2.24
39 40 9.409312 CATGAGCATGTTTTTCACAAATTAGTA 57.591 29.630 2.34 0.00 39.50 1.82
40 41 9.979578 ATGAGCATGTTTTTCACAAATTAGTAA 57.020 25.926 0.00 0.00 39.50 2.24
41 42 9.809096 TGAGCATGTTTTTCACAAATTAGTAAA 57.191 25.926 0.00 0.00 39.50 2.01
134 135 1.471964 CTCGCAACGAGCAGACTATC 58.528 55.000 3.83 0.00 46.75 2.08
145 149 2.289274 AGCAGACTATCGTCAGACATCG 59.711 50.000 0.41 0.00 42.73 3.84
164 168 0.669625 GTAGTGGAACGGCTCACACC 60.670 60.000 6.96 0.00 45.86 4.16
188 192 4.760047 GATGTGGGCGACGGCTGT 62.760 66.667 21.48 0.00 39.81 4.40
220 226 0.172803 AACAGGCGACATAGACGGTC 59.827 55.000 0.00 0.00 0.00 4.79
222 228 2.125961 AGGCGACATAGACGGTCCC 61.126 63.158 4.14 0.00 31.55 4.46
247 253 6.877611 TGTTCTCGGCTTATTTTCTTTTCT 57.122 33.333 0.00 0.00 0.00 2.52
256 262 8.487970 CGGCTTATTTTCTTTTCTTTTTCTTCC 58.512 33.333 0.00 0.00 0.00 3.46
257 263 9.325198 GGCTTATTTTCTTTTCTTTTTCTTCCA 57.675 29.630 0.00 0.00 0.00 3.53
260 266 7.792374 ATTTTCTTTTCTTTTTCTTCCAGGC 57.208 32.000 0.00 0.00 0.00 4.85
261 267 5.930837 TTCTTTTCTTTTTCTTCCAGGCA 57.069 34.783 0.00 0.00 0.00 4.75
265 271 4.589216 TTCTTTTTCTTCCAGGCATGTG 57.411 40.909 0.00 0.00 0.00 3.21
282 288 4.083431 GCATGTGCCATAAAATGCAACAAA 60.083 37.500 0.00 0.00 43.84 2.83
283 289 5.623335 CATGTGCCATAAAATGCAACAAAG 58.377 37.500 0.00 0.00 39.57 2.77
297 303 6.251655 TGCAACAAAGCAAGTTTTTCATTT 57.748 29.167 0.00 0.00 42.46 2.32
298 304 7.369803 TGCAACAAAGCAAGTTTTTCATTTA 57.630 28.000 0.00 0.00 42.46 1.40
299 305 7.239972 TGCAACAAAGCAAGTTTTTCATTTAC 58.760 30.769 0.00 0.00 42.46 2.01
329 335 7.816945 AAAAAGTTTCCATTATTCATCGCTG 57.183 32.000 0.00 0.00 0.00 5.18
336 342 4.023792 TCCATTATTCATCGCTGCATGAAC 60.024 41.667 21.27 0.00 43.88 3.18
344 350 1.459209 TCGCTGCATGAACTTTGTACG 59.541 47.619 0.00 0.00 0.00 3.67
346 352 1.729149 GCTGCATGAACTTTGTACGGC 60.729 52.381 0.00 0.00 0.00 5.68
354 360 2.831685 ACTTTGTACGGCATGACAGA 57.168 45.000 0.00 0.00 0.00 3.41
383 389 5.924254 GCATAACTTAGTTGGTTTGGTTTCC 59.076 40.000 8.00 0.00 0.00 3.13
389 395 1.828595 GTTGGTTTGGTTTCCTGTGGT 59.171 47.619 0.00 0.00 0.00 4.16
395 401 4.022329 GGTTTGGTTTCCTGTGGTAGAATG 60.022 45.833 0.00 0.00 0.00 2.67
403 409 5.241403 TCCTGTGGTAGAATGTGTCAAAT 57.759 39.130 0.00 0.00 0.00 2.32
449 456 1.718757 GACTGGGCATGGATGTTCGC 61.719 60.000 0.00 0.00 0.00 4.70
457 464 4.022416 GGGCATGGATGTTCGCATAAATTA 60.022 41.667 0.00 0.00 38.08 1.40
467 474 4.545823 TCGCATAAATTAAGGCTTTCCG 57.454 40.909 4.45 0.00 37.47 4.30
474 481 3.965470 ATTAAGGCTTTCCGGGGTTAT 57.035 42.857 4.45 0.00 37.47 1.89
481 488 2.093128 GCTTTCCGGGGTTATTCTCTCA 60.093 50.000 0.00 0.00 0.00 3.27
482 489 3.532542 CTTTCCGGGGTTATTCTCTCAC 58.467 50.000 0.00 0.00 0.00 3.51
483 490 1.492764 TCCGGGGTTATTCTCTCACC 58.507 55.000 0.00 0.00 0.00 4.02
485 492 1.108776 CGGGGTTATTCTCTCACCGA 58.891 55.000 0.00 0.00 42.19 4.69
489 496 4.618460 CGGGGTTATTCTCTCACCGATATG 60.618 50.000 0.00 0.00 42.19 1.78
496 503 2.766263 TCTCTCACCGATATGGCTTGTT 59.234 45.455 0.00 0.00 43.94 2.83
503 510 2.030457 CCGATATGGCTTGTTCGTCAAC 59.970 50.000 0.00 0.00 32.18 3.18
507 514 5.918576 CGATATGGCTTGTTCGTCAACTATA 59.081 40.000 0.00 0.00 33.17 1.31
508 515 6.419710 CGATATGGCTTGTTCGTCAACTATAA 59.580 38.462 0.00 0.00 33.17 0.98
509 516 7.358435 CGATATGGCTTGTTCGTCAACTATAAG 60.358 40.741 0.00 0.00 33.17 1.73
512 519 4.694037 GGCTTGTTCGTCAACTATAAGGTT 59.306 41.667 0.00 0.00 33.17 3.50
513 520 5.163884 GGCTTGTTCGTCAACTATAAGGTTC 60.164 44.000 0.00 0.00 33.17 3.62
515 522 6.092259 GCTTGTTCGTCAACTATAAGGTTCAT 59.908 38.462 0.00 0.00 33.17 2.57
516 523 6.961359 TGTTCGTCAACTATAAGGTTCATG 57.039 37.500 0.00 0.00 33.17 3.07
517 524 6.460781 TGTTCGTCAACTATAAGGTTCATGT 58.539 36.000 0.00 0.00 33.17 3.21
518 525 6.367695 TGTTCGTCAACTATAAGGTTCATGTG 59.632 38.462 0.00 0.00 33.17 3.21
520 527 4.034048 CGTCAACTATAAGGTTCATGTGGC 59.966 45.833 0.00 0.00 0.00 5.01
523 530 5.414454 TCAACTATAAGGTTCATGTGGCAAC 59.586 40.000 0.00 0.00 0.00 4.17
524 531 5.179452 ACTATAAGGTTCATGTGGCAACT 57.821 39.130 0.00 0.00 37.61 3.16
525 532 5.570320 ACTATAAGGTTCATGTGGCAACTT 58.430 37.500 0.00 0.00 37.61 2.66
526 533 6.010219 ACTATAAGGTTCATGTGGCAACTTT 58.990 36.000 0.00 0.00 37.61 2.66
527 534 7.172342 ACTATAAGGTTCATGTGGCAACTTTA 58.828 34.615 0.00 0.00 31.10 1.85
528 535 7.834181 ACTATAAGGTTCATGTGGCAACTTTAT 59.166 33.333 13.39 13.39 38.02 1.40
530 537 4.406456 AGGTTCATGTGGCAACTTTATCA 58.594 39.130 0.00 0.00 37.61 2.15
531 538 4.832266 AGGTTCATGTGGCAACTTTATCAA 59.168 37.500 0.00 0.00 37.61 2.57
532 539 5.481473 AGGTTCATGTGGCAACTTTATCAAT 59.519 36.000 0.00 0.00 37.61 2.57
533 540 5.807011 GGTTCATGTGGCAACTTTATCAATC 59.193 40.000 0.00 0.00 37.61 2.67
534 541 6.350445 GGTTCATGTGGCAACTTTATCAATCT 60.350 38.462 0.00 0.00 37.61 2.40
535 542 6.441093 TCATGTGGCAACTTTATCAATCTC 57.559 37.500 0.00 0.00 37.61 2.75
536 543 5.945191 TCATGTGGCAACTTTATCAATCTCA 59.055 36.000 0.00 0.00 37.61 3.27
537 544 6.433716 TCATGTGGCAACTTTATCAATCTCAA 59.566 34.615 0.00 0.00 37.61 3.02
538 545 6.258230 TGTGGCAACTTTATCAATCTCAAG 57.742 37.500 0.00 0.00 37.61 3.02
540 547 6.660521 TGTGGCAACTTTATCAATCTCAAGAT 59.339 34.615 0.00 0.00 34.64 2.40
541 548 7.177216 TGTGGCAACTTTATCAATCTCAAGATT 59.823 33.333 0.00 0.00 40.88 2.40
542 549 8.031277 GTGGCAACTTTATCAATCTCAAGATTT 58.969 33.333 2.47 0.00 39.19 2.17
544 551 8.246180 GGCAACTTTATCAATCTCAAGATTTGA 58.754 33.333 2.47 5.28 42.41 2.69
563 1646 2.832129 TGAGAGGTGTTCATGGGAGTAC 59.168 50.000 0.00 0.00 0.00 2.73
575 1658 7.709182 TGTTCATGGGAGTACGATTAAGTTATG 59.291 37.037 0.00 0.00 0.00 1.90
576 1659 7.591421 TCATGGGAGTACGATTAAGTTATGA 57.409 36.000 0.00 0.00 0.00 2.15
578 1661 7.287005 TCATGGGAGTACGATTAAGTTATGAGT 59.713 37.037 0.00 0.00 0.00 3.41
581 1664 7.093640 TGGGAGTACGATTAAGTTATGAGTTGT 60.094 37.037 0.00 0.00 0.00 3.32
588 1671 7.868922 ACGATTAAGTTATGAGTTGTGTGTGTA 59.131 33.333 0.00 0.00 0.00 2.90
597 1680 6.996562 TGAGTTGTGTGTGTACGTTTATAG 57.003 37.500 0.00 0.00 0.00 1.31
598 1681 6.737118 TGAGTTGTGTGTGTACGTTTATAGA 58.263 36.000 0.00 0.00 0.00 1.98
604 1687 7.595604 TGTGTGTGTACGTTTATAGAGATGAA 58.404 34.615 0.00 0.00 0.00 2.57
613 1696 6.075918 CGTTTATAGAGATGAATGTGCATGC 58.924 40.000 11.82 11.82 0.00 4.06
618 1701 0.316442 GATGAATGTGCATGCGTCCG 60.316 55.000 14.09 0.00 0.00 4.79
621 1704 0.937304 GAATGTGCATGCGTCCGTAT 59.063 50.000 14.09 0.00 0.00 3.06
623 1706 0.657312 ATGTGCATGCGTCCGTATTG 59.343 50.000 14.09 0.00 0.00 1.90
632 1715 1.058695 GCGTCCGTATTGTGTTTCTCG 59.941 52.381 0.00 0.00 0.00 4.04
649 1732 9.717892 GTGTTTCTCGAGAAATAAAAAGAACTT 57.282 29.630 35.84 0.00 44.69 2.66
671 1754 9.477484 AACTTTGTACAGTAGTGTAAGAGAATG 57.523 33.333 12.01 7.74 40.94 2.67
702 1785 6.950545 TCACCAGTATTTACACGACAAAAAG 58.049 36.000 0.00 0.00 0.00 2.27
844 1927 3.217626 CCTTCCTTGCTTCAGTTTCACT 58.782 45.455 0.00 0.00 0.00 3.41
848 1931 2.810852 CCTTGCTTCAGTTTCACTCTCC 59.189 50.000 0.00 0.00 0.00 3.71
849 1932 2.154854 TGCTTCAGTTTCACTCTCCG 57.845 50.000 0.00 0.00 0.00 4.63
852 1935 0.685097 TTCAGTTTCACTCTCCGGGG 59.315 55.000 0.00 0.00 0.00 5.73
853 1936 0.471211 TCAGTTTCACTCTCCGGGGT 60.471 55.000 0.00 0.00 0.00 4.95
895 1979 2.947652 CTGGCCTATGAATTCACCACAG 59.052 50.000 11.07 10.94 0.00 3.66
898 1982 2.945440 GCCTATGAATTCACCACAGCCA 60.945 50.000 11.07 0.00 0.00 4.75
899 1983 3.559069 CCTATGAATTCACCACAGCCAT 58.441 45.455 11.07 0.00 0.00 4.40
925 2009 0.386478 GCTCAACAAAAGCTCGCCAG 60.386 55.000 0.00 0.00 36.80 4.85
927 2011 1.334869 CTCAACAAAAGCTCGCCAGTT 59.665 47.619 0.00 0.00 0.00 3.16
1365 2449 3.487544 GGTTCAAGCGCATAAACTGATCC 60.488 47.826 11.47 7.02 0.00 3.36
1367 2451 1.665679 CAAGCGCATAAACTGATCCGT 59.334 47.619 11.47 0.00 0.00 4.69
1410 2509 1.231068 GGGGGATGGTCATGCATGT 59.769 57.895 25.43 6.92 0.00 3.21
1485 2584 5.964168 GCGTACTACTGTACAACTACATCAG 59.036 44.000 0.00 0.00 46.88 2.90
1509 2608 5.229423 GCAACAAGCAAGTGAATAAATGGA 58.771 37.500 0.00 0.00 44.79 3.41
1513 2612 5.183904 ACAAGCAAGTGAATAAATGGAGTCC 59.816 40.000 0.73 0.73 0.00 3.85
1532 2631 1.986378 CCGTCTACGTTGCAGAAGAAG 59.014 52.381 0.00 0.00 37.74 2.85
1617 2721 2.559440 CCTTGAGTAGCTTGAGGATGC 58.441 52.381 0.00 0.00 0.00 3.91
1647 2814 7.830697 TGTATGTTTTGATCATCATCCAGAAGT 59.169 33.333 0.00 0.00 0.00 3.01
1669 2836 6.173339 AGTACTCTTTTGTGTGTATCCATGG 58.827 40.000 4.97 4.97 0.00 3.66
1706 2900 3.129638 TGATCATTCATGTGTGTGCATGG 59.870 43.478 0.00 0.00 44.54 3.66
1707 2901 2.792878 TCATTCATGTGTGTGCATGGA 58.207 42.857 6.26 0.00 44.54 3.41
1708 2902 3.155501 TCATTCATGTGTGTGCATGGAA 58.844 40.909 6.26 0.00 44.54 3.53
1709 2903 3.573110 TCATTCATGTGTGTGCATGGAAA 59.427 39.130 6.26 0.00 44.54 3.13
1710 2904 4.038883 TCATTCATGTGTGTGCATGGAAAA 59.961 37.500 6.26 0.00 44.54 2.29
1711 2905 4.397481 TTCATGTGTGTGCATGGAAAAA 57.603 36.364 6.26 0.00 44.54 1.94
1736 2930 7.553881 AAATTATATGAAACCAGGTCTCACG 57.446 36.000 0.00 0.00 0.00 4.35
1737 2931 3.543680 ATATGAAACCAGGTCTCACGG 57.456 47.619 0.00 0.00 0.00 4.94
1738 2932 1.056660 ATGAAACCAGGTCTCACGGT 58.943 50.000 0.00 0.00 33.32 4.83
1739 2933 0.834612 TGAAACCAGGTCTCACGGTT 59.165 50.000 0.00 0.00 44.90 4.44
1740 2934 2.040939 TGAAACCAGGTCTCACGGTTA 58.959 47.619 0.00 0.00 42.18 2.85
1741 2935 2.036733 TGAAACCAGGTCTCACGGTTAG 59.963 50.000 0.00 0.00 42.18 2.34
1742 2936 0.320697 AACCAGGTCTCACGGTTAGC 59.679 55.000 0.00 0.00 41.22 3.09
1743 2937 0.830444 ACCAGGTCTCACGGTTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
1744 2938 0.108615 CCAGGTCTCACGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
1745 2939 0.108615 CAGGTCTCACGGTTAGCAGG 60.109 60.000 0.00 0.00 0.00 4.85
1746 2940 0.542232 AGGTCTCACGGTTAGCAGGT 60.542 55.000 0.00 0.00 0.00 4.00
1747 2941 0.389948 GGTCTCACGGTTAGCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
1748 2942 0.601558 GTCTCACGGTTAGCAGGTGA 59.398 55.000 3.41 3.41 38.29 4.02
1750 2944 3.045518 TCACGGTTAGCAGGTGAGA 57.954 52.632 0.00 0.00 35.89 3.27
1751 2945 0.601558 TCACGGTTAGCAGGTGAGAC 59.398 55.000 0.00 0.00 35.89 3.36
1752 2946 0.389948 CACGGTTAGCAGGTGAGACC 60.390 60.000 0.00 0.00 38.99 3.85
1753 2947 1.218316 CGGTTAGCAGGTGAGACCC 59.782 63.158 0.00 0.00 39.75 4.46
1754 2948 1.218316 GGTTAGCAGGTGAGACCCG 59.782 63.158 0.00 0.00 39.75 5.28
1755 2949 1.542187 GGTTAGCAGGTGAGACCCGT 61.542 60.000 0.00 0.00 39.75 5.28
1756 2950 0.108756 GTTAGCAGGTGAGACCCGTC 60.109 60.000 0.00 0.00 39.75 4.79
1757 2951 1.255667 TTAGCAGGTGAGACCCGTCC 61.256 60.000 0.00 0.00 39.75 4.79
1758 2952 2.151307 TAGCAGGTGAGACCCGTCCT 62.151 60.000 0.00 0.00 39.75 3.85
1759 2953 2.973899 CAGGTGAGACCCGTCCTG 59.026 66.667 0.00 0.00 39.75 3.86
1760 2954 2.851801 AGGTGAGACCCGTCCTGA 59.148 61.111 0.00 0.00 39.75 3.86
1761 2955 1.388531 AGGTGAGACCCGTCCTGAT 59.611 57.895 0.00 0.00 39.75 2.90
1762 2956 0.972983 AGGTGAGACCCGTCCTGATG 60.973 60.000 0.00 0.00 39.75 3.07
1763 2957 1.517832 GTGAGACCCGTCCTGATGG 59.482 63.158 0.00 0.00 37.23 3.51
1764 2958 0.970937 GTGAGACCCGTCCTGATGGA 60.971 60.000 6.98 0.00 39.90 3.41
1765 2959 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.000 6.98 0.00 45.29 3.41
1766 2960 0.390860 GAGACCCGTCCTGATGGATG 59.609 60.000 6.98 0.00 45.29 3.51
1773 2967 1.645034 GTCCTGATGGATGACACGTG 58.355 55.000 15.48 15.48 45.29 4.49
1774 2968 1.204704 GTCCTGATGGATGACACGTGA 59.795 52.381 25.01 0.00 45.29 4.35
1775 2969 1.204704 TCCTGATGGATGACACGTGAC 59.795 52.381 25.01 17.68 37.46 3.67
1776 2970 1.066929 CCTGATGGATGACACGTGACA 60.067 52.381 25.01 23.44 34.57 3.58
1777 2971 2.419159 CCTGATGGATGACACGTGACAT 60.419 50.000 28.93 28.93 34.57 3.06
1778 2972 3.264947 CTGATGGATGACACGTGACATT 58.735 45.455 29.08 16.96 31.08 2.71
1779 2973 3.261580 TGATGGATGACACGTGACATTC 58.738 45.455 29.08 27.59 31.08 2.67
1780 2974 2.829741 TGGATGACACGTGACATTCA 57.170 45.000 29.97 29.97 34.27 2.57
1781 2975 2.412870 TGGATGACACGTGACATTCAC 58.587 47.619 29.97 22.99 43.65 3.18
1793 2987 5.565723 GTGACATTCACAAATCACAAAGC 57.434 39.130 1.34 0.00 46.22 3.51
1794 2988 5.042593 GTGACATTCACAAATCACAAAGCA 58.957 37.500 1.34 0.00 46.22 3.91
1795 2989 5.693104 GTGACATTCACAAATCACAAAGCAT 59.307 36.000 1.34 0.00 46.22 3.79
1796 2990 5.921976 TGACATTCACAAATCACAAAGCATC 59.078 36.000 0.00 0.00 0.00 3.91
1797 2991 5.232463 ACATTCACAAATCACAAAGCATCC 58.768 37.500 0.00 0.00 0.00 3.51
1798 2992 3.940209 TCACAAATCACAAAGCATCCC 57.060 42.857 0.00 0.00 0.00 3.85
1799 2993 2.562298 TCACAAATCACAAAGCATCCCC 59.438 45.455 0.00 0.00 0.00 4.81
1800 2994 1.901833 ACAAATCACAAAGCATCCCCC 59.098 47.619 0.00 0.00 0.00 5.40
1801 2995 1.901159 CAAATCACAAAGCATCCCCCA 59.099 47.619 0.00 0.00 0.00 4.96
1802 2996 1.560505 AATCACAAAGCATCCCCCAC 58.439 50.000 0.00 0.00 0.00 4.61
1803 2997 0.324645 ATCACAAAGCATCCCCCACC 60.325 55.000 0.00 0.00 0.00 4.61
1804 2998 1.984026 CACAAAGCATCCCCCACCC 60.984 63.158 0.00 0.00 0.00 4.61
1805 2999 2.364186 CAAAGCATCCCCCACCCC 60.364 66.667 0.00 0.00 0.00 4.95
1806 3000 3.683518 AAAGCATCCCCCACCCCC 61.684 66.667 0.00 0.00 0.00 5.40
1840 3034 2.901291 GGGGGAGAGAGATTAGATGCT 58.099 52.381 0.00 0.00 0.00 3.79
1841 3035 3.247162 GGGGGAGAGAGATTAGATGCTT 58.753 50.000 0.00 0.00 0.00 3.91
1842 3036 3.650461 GGGGGAGAGAGATTAGATGCTTT 59.350 47.826 0.00 0.00 0.00 3.51
1843 3037 4.504689 GGGGGAGAGAGATTAGATGCTTTG 60.505 50.000 0.00 0.00 0.00 2.77
1844 3038 4.102367 GGGGAGAGAGATTAGATGCTTTGT 59.898 45.833 0.00 0.00 0.00 2.83
1845 3039 5.055812 GGGAGAGAGATTAGATGCTTTGTG 58.944 45.833 0.00 0.00 0.00 3.33
1846 3040 5.163364 GGGAGAGAGATTAGATGCTTTGTGA 60.163 44.000 0.00 0.00 0.00 3.58
1847 3041 6.464180 GGGAGAGAGATTAGATGCTTTGTGAT 60.464 42.308 0.00 0.00 0.00 3.06
1848 3042 6.991531 GGAGAGAGATTAGATGCTTTGTGATT 59.008 38.462 0.00 0.00 0.00 2.57
1849 3043 7.498570 GGAGAGAGATTAGATGCTTTGTGATTT 59.501 37.037 0.00 0.00 0.00 2.17
1850 3044 8.211116 AGAGAGATTAGATGCTTTGTGATTTG 57.789 34.615 0.00 0.00 0.00 2.32
1851 3045 7.828223 AGAGAGATTAGATGCTTTGTGATTTGT 59.172 33.333 0.00 0.00 0.00 2.83
1852 3046 7.759465 AGAGATTAGATGCTTTGTGATTTGTG 58.241 34.615 0.00 0.00 0.00 3.33
1853 3047 7.609146 AGAGATTAGATGCTTTGTGATTTGTGA 59.391 33.333 0.00 0.00 0.00 3.58
1854 3048 8.114331 AGATTAGATGCTTTGTGATTTGTGAA 57.886 30.769 0.00 0.00 0.00 3.18
1855 3049 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
1856 3050 9.362539 GATTAGATGCTTTGTGATTTGTGAATT 57.637 29.630 0.00 0.00 0.00 2.17
1857 3051 8.746922 TTAGATGCTTTGTGATTTGTGAATTC 57.253 30.769 0.00 0.00 0.00 2.17
1858 3052 6.161381 AGATGCTTTGTGATTTGTGAATTCC 58.839 36.000 2.27 0.00 0.00 3.01
1859 3053 5.273674 TGCTTTGTGATTTGTGAATTCCA 57.726 34.783 2.27 0.00 0.00 3.53
1860 3054 5.049167 TGCTTTGTGATTTGTGAATTCCAC 58.951 37.500 2.27 3.32 45.88 4.02
1871 3065 4.685169 GTGAATTCCACGTGTCATTCAT 57.315 40.909 28.56 7.30 37.82 2.57
1872 3066 4.651994 GTGAATTCCACGTGTCATTCATC 58.348 43.478 28.56 21.49 37.82 2.92
1873 3067 4.154015 GTGAATTCCACGTGTCATTCATCA 59.846 41.667 28.56 16.08 37.82 3.07
1874 3068 4.392754 TGAATTCCACGTGTCATTCATCAG 59.607 41.667 24.98 5.44 32.01 2.90
1875 3069 2.385013 TCCACGTGTCATTCATCAGG 57.615 50.000 15.65 0.00 0.00 3.86
1876 3070 1.899142 TCCACGTGTCATTCATCAGGA 59.101 47.619 15.65 0.00 0.00 3.86
1877 3071 2.501316 TCCACGTGTCATTCATCAGGAT 59.499 45.455 15.65 0.00 0.00 3.24
1878 3072 2.610833 CCACGTGTCATTCATCAGGATG 59.389 50.000 15.65 2.84 40.09 3.51
1879 3073 2.610833 CACGTGTCATTCATCAGGATGG 59.389 50.000 7.58 0.00 39.24 3.51
1880 3074 2.216046 CGTGTCATTCATCAGGATGGG 58.784 52.381 9.25 0.88 39.24 4.00
1881 3075 2.420547 CGTGTCATTCATCAGGATGGGT 60.421 50.000 9.25 0.00 39.24 4.51
1882 3076 3.209410 GTGTCATTCATCAGGATGGGTC 58.791 50.000 9.25 0.00 39.24 4.46
1883 3077 3.117745 TGTCATTCATCAGGATGGGTCT 58.882 45.455 9.25 0.00 39.24 3.85
1884 3078 3.135348 TGTCATTCATCAGGATGGGTCTC 59.865 47.826 9.25 0.24 39.24 3.36
1885 3079 2.366590 TCATTCATCAGGATGGGTCTCG 59.633 50.000 9.25 0.00 39.24 4.04
1886 3080 0.465705 TTCATCAGGATGGGTCTCGC 59.534 55.000 9.25 0.00 39.24 5.03
1887 3081 0.687427 TCATCAGGATGGGTCTCGCA 60.687 55.000 9.25 0.00 39.24 5.10
1888 3082 0.395686 CATCAGGATGGGTCTCGCAT 59.604 55.000 1.25 0.00 39.69 4.73
1889 3083 0.395686 ATCAGGATGGGTCTCGCATG 59.604 55.000 4.16 0.00 37.16 4.06
1890 3084 0.687427 TCAGGATGGGTCTCGCATGA 60.687 55.000 0.00 0.00 37.16 3.07
1891 3085 0.249784 CAGGATGGGTCTCGCATGAG 60.250 60.000 0.00 0.00 43.99 2.90
1892 3086 4.939505 TCAGGATGGGTCTCGCATGAGA 62.940 54.545 0.00 0.00 42.71 3.27
1898 3092 4.442038 TCTCGCATGAGACCTGGT 57.558 55.556 0.00 0.00 46.25 4.00
1899 3093 2.193532 TCTCGCATGAGACCTGGTC 58.806 57.895 19.20 19.20 46.25 4.02
1900 3094 0.323816 TCTCGCATGAGACCTGGTCT 60.324 55.000 28.70 28.70 46.25 3.85
1913 3107 6.882768 AGACCTGGTCTCATAGAATTCTTT 57.117 37.500 23.49 2.41 38.71 2.52
1914 3108 7.264294 AGACCTGGTCTCATAGAATTCTTTT 57.736 36.000 23.49 0.00 38.71 2.27
1915 3109 7.334858 AGACCTGGTCTCATAGAATTCTTTTC 58.665 38.462 23.49 0.00 38.71 2.29
1916 3110 6.418946 ACCTGGTCTCATAGAATTCTTTTCC 58.581 40.000 14.36 8.65 0.00 3.13
1917 3111 5.525378 CCTGGTCTCATAGAATTCTTTTCCG 59.475 44.000 14.36 0.00 0.00 4.30
1918 3112 6.049955 TGGTCTCATAGAATTCTTTTCCGT 57.950 37.500 14.36 0.00 0.00 4.69
1919 3113 5.874810 TGGTCTCATAGAATTCTTTTCCGTG 59.125 40.000 14.36 4.18 0.00 4.94
1920 3114 5.875359 GGTCTCATAGAATTCTTTTCCGTGT 59.125 40.000 14.36 0.00 0.00 4.49
1921 3115 6.183360 GGTCTCATAGAATTCTTTTCCGTGTG 60.183 42.308 14.36 5.20 0.00 3.82
1922 3116 5.351465 TCTCATAGAATTCTTTTCCGTGTGC 59.649 40.000 14.36 0.00 0.00 4.57
1923 3117 5.000591 TCATAGAATTCTTTTCCGTGTGCA 58.999 37.500 14.36 0.00 0.00 4.57
1924 3118 5.647658 TCATAGAATTCTTTTCCGTGTGCAT 59.352 36.000 14.36 0.00 0.00 3.96
1925 3119 4.164822 AGAATTCTTTTCCGTGTGCATG 57.835 40.909 0.88 0.00 0.00 4.06
1928 3122 1.522668 TCTTTTCCGTGTGCATGAGG 58.477 50.000 0.00 0.00 0.00 3.86
1936 3130 1.677576 CGTGTGCATGAGGGCATAAAT 59.322 47.619 0.00 0.00 46.92 1.40
1999 3193 3.125316 GCATGTACCAGTGTTCAACTAGC 59.875 47.826 0.00 0.00 36.83 3.42
2000 3194 4.314961 CATGTACCAGTGTTCAACTAGCA 58.685 43.478 0.00 0.00 36.83 3.49
2001 3195 3.990092 TGTACCAGTGTTCAACTAGCAG 58.010 45.455 0.00 0.00 36.83 4.24
2022 3216 4.637091 CAGTACATGCAATCAAGTGGATGA 59.363 41.667 16.94 0.00 46.92 2.92
2027 3221 1.468054 GCAATCAAGTGGATGAACGGC 60.468 52.381 0.00 0.00 36.02 5.68
2034 3228 1.751924 AGTGGATGAACGGCTAGAGTC 59.248 52.381 0.00 0.00 0.00 3.36
2035 3229 1.476891 GTGGATGAACGGCTAGAGTCA 59.523 52.381 0.00 0.00 0.00 3.41
2045 3239 3.182967 CGGCTAGAGTCAGTTGTTGATC 58.817 50.000 0.00 0.00 38.29 2.92
2057 3251 7.448161 AGTCAGTTGTTGATCAAATAACCATCA 59.552 33.333 23.07 9.25 39.89 3.07
2061 3255 9.643693 AGTTGTTGATCAAATAACCATCAAATC 57.356 29.630 23.07 7.82 39.89 2.17
2062 3256 8.586273 GTTGTTGATCAAATAACCATCAAATCG 58.414 33.333 10.35 0.00 38.07 3.34
2072 3266 9.855021 AAATAACCATCAAATCGGAGTAAAAAG 57.145 29.630 0.00 0.00 0.00 2.27
2074 3268 7.703058 AACCATCAAATCGGAGTAAAAAGAT 57.297 32.000 0.00 0.00 0.00 2.40
2075 3269 7.703058 ACCATCAAATCGGAGTAAAAAGATT 57.297 32.000 0.00 0.00 35.12 2.40
2085 3279 8.306680 TCGGAGTAAAAAGATTTGAACTACAG 57.693 34.615 4.37 0.00 0.00 2.74
2092 3286 4.287766 AGATTTGAACTACAGTGGGTCC 57.712 45.455 0.00 0.00 0.00 4.46
2096 3290 1.535687 AACTACAGTGGGTCCGGCT 60.536 57.895 0.00 0.00 0.00 5.52
2102 3296 1.684734 AGTGGGTCCGGCTATTCGT 60.685 57.895 0.00 0.00 0.00 3.85
2139 3333 6.134535 TCTAACAAGGGACACATGGTAAAT 57.865 37.500 0.00 0.00 0.00 1.40
2147 3341 7.213178 AGGGACACATGGTAAATCTTTATCT 57.787 36.000 0.00 0.00 0.00 1.98
2148 3342 7.056635 AGGGACACATGGTAAATCTTTATCTG 58.943 38.462 0.00 0.00 0.00 2.90
2149 3343 6.828785 GGGACACATGGTAAATCTTTATCTGT 59.171 38.462 0.00 0.00 0.00 3.41
2188 3382 3.681897 TGTTGTGTGCATTGGTTTTGTTC 59.318 39.130 0.00 0.00 0.00 3.18
2199 3393 4.619437 TGGTTTTGTTCGTGGTTTAGTC 57.381 40.909 0.00 0.00 0.00 2.59
2210 3404 4.062293 CGTGGTTTAGTCTTCATCAACCA 58.938 43.478 0.00 0.00 43.69 3.67
2246 3444 3.753272 GTGTGTATGTGATTGAGCAGGTT 59.247 43.478 0.00 0.00 0.00 3.50
2290 3488 0.877071 GGATGGCGGCATAGTTCATG 59.123 55.000 25.86 0.00 37.73 3.07
2299 3497 4.126437 CGGCATAGTTCATGGATAACACA 58.874 43.478 0.00 0.00 34.97 3.72
2303 3501 5.220854 GCATAGTTCATGGATAACACACACC 60.221 44.000 0.00 0.00 34.97 4.16
2311 3509 0.249398 ATAACACACACCTCCTCGCC 59.751 55.000 0.00 0.00 0.00 5.54
2329 3527 1.369625 CCTTACGCATGGTTCCAGTC 58.630 55.000 0.00 0.00 0.00 3.51
2349 3547 6.460123 CCAGTCTGCTATGACTTTGTTGTTTT 60.460 38.462 0.00 0.00 44.01 2.43
2352 3550 6.972328 GTCTGCTATGACTTTGTTGTTTTTGA 59.028 34.615 0.00 0.00 34.39 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.832520 ACATGCTCATGGTGTATGTAAAAA 57.167 33.333 16.66 0.00 42.91 1.94
1 2 6.832520 AACATGCTCATGGTGTATGTAAAA 57.167 33.333 17.79 0.00 42.91 1.52
2 3 6.832520 AAACATGCTCATGGTGTATGTAAA 57.167 33.333 17.79 0.00 37.86 2.01
3 4 6.832520 AAAACATGCTCATGGTGTATGTAA 57.167 33.333 17.79 0.00 37.86 2.41
4 5 6.432472 TGAAAAACATGCTCATGGTGTATGTA 59.568 34.615 17.79 5.51 37.86 2.29
6 7 5.574055 GTGAAAAACATGCTCATGGTGTATG 59.426 40.000 13.69 13.02 37.86 2.39
7 8 5.243507 TGTGAAAAACATGCTCATGGTGTAT 59.756 36.000 13.69 0.00 37.86 2.29
8 9 4.582240 TGTGAAAAACATGCTCATGGTGTA 59.418 37.500 13.69 0.00 37.86 2.90
9 10 3.384146 TGTGAAAAACATGCTCATGGTGT 59.616 39.130 13.69 0.00 37.86 4.16
10 11 3.979948 TGTGAAAAACATGCTCATGGTG 58.020 40.909 13.69 0.00 37.86 4.17
11 12 4.669206 TTGTGAAAAACATGCTCATGGT 57.331 36.364 13.69 4.71 41.22 3.55
12 13 6.548441 AATTTGTGAAAAACATGCTCATGG 57.452 33.333 13.69 0.00 42.91 3.66
13 14 8.301730 ACTAATTTGTGAAAAACATGCTCATG 57.698 30.769 8.21 8.21 44.15 3.07
14 15 9.979578 TTACTAATTTGTGAAAAACATGCTCAT 57.020 25.926 2.59 0.00 38.99 2.90
15 16 9.809096 TTTACTAATTTGTGAAAAACATGCTCA 57.191 25.926 2.59 0.00 38.99 4.26
93 94 6.183360 CGAGTAGCAACATACGGGTTATTTTT 60.183 38.462 0.00 0.00 0.00 1.94
94 95 5.292589 CGAGTAGCAACATACGGGTTATTTT 59.707 40.000 0.00 0.00 0.00 1.82
95 96 4.807304 CGAGTAGCAACATACGGGTTATTT 59.193 41.667 0.00 0.00 0.00 1.40
98 99 3.425577 CGAGTAGCAACATACGGGTTA 57.574 47.619 0.00 0.00 0.00 2.85
134 135 2.516923 GTTCCACTACGATGTCTGACG 58.483 52.381 2.98 0.00 0.00 4.35
145 149 0.669625 GGTGTGAGCCGTTCCACTAC 60.670 60.000 0.00 0.00 34.57 2.73
169 173 4.148825 AGCCGTCGCCCACATCTC 62.149 66.667 0.00 0.00 34.57 2.75
179 183 2.316867 TGATGCAACACAGCCGTCG 61.317 57.895 0.00 0.00 32.10 5.12
193 197 1.159285 ATGTCGCCTGTTGTGTGATG 58.841 50.000 0.00 0.00 0.00 3.07
194 198 2.233676 TCTATGTCGCCTGTTGTGTGAT 59.766 45.455 0.00 0.00 0.00 3.06
220 226 3.947834 AGAAAATAAGCCGAGAACATGGG 59.052 43.478 0.00 0.00 0.00 4.00
222 228 7.308435 AGAAAAGAAAATAAGCCGAGAACATG 58.692 34.615 0.00 0.00 0.00 3.21
247 253 2.818130 GCACATGCCTGGAAGAAAAA 57.182 45.000 0.00 0.00 34.07 1.94
260 266 8.212870 TGCTTTGTTGCATTTTATGGCACATG 62.213 38.462 0.00 0.00 40.09 3.21
261 267 6.260342 TGCTTTGTTGCATTTTATGGCACAT 61.260 36.000 0.00 0.00 40.09 3.21
265 271 4.213906 ACTTGCTTTGTTGCATTTTATGGC 59.786 37.500 0.00 0.00 42.96 4.40
268 274 8.457261 TGAAAAACTTGCTTTGTTGCATTTTAT 58.543 25.926 0.00 0.00 42.96 1.40
303 309 9.352784 CAGCGATGAATAATGGAAACTTTTTAA 57.647 29.630 0.00 0.00 0.00 1.52
304 310 7.487829 GCAGCGATGAATAATGGAAACTTTTTA 59.512 33.333 4.02 0.00 0.00 1.52
307 313 5.105797 TGCAGCGATGAATAATGGAAACTTT 60.106 36.000 4.02 0.00 0.00 2.66
314 320 4.023450 AGTTCATGCAGCGATGAATAATGG 60.023 41.667 17.74 0.00 42.78 3.16
329 335 2.161410 TCATGCCGTACAAAGTTCATGC 59.839 45.455 0.00 0.00 33.39 4.06
336 342 2.413112 CAGTCTGTCATGCCGTACAAAG 59.587 50.000 0.00 0.00 0.00 2.77
344 350 2.609427 TATGCTCAGTCTGTCATGCC 57.391 50.000 15.67 0.00 0.00 4.40
346 352 6.336566 ACTAAGTTATGCTCAGTCTGTCATG 58.663 40.000 15.67 0.00 0.00 3.07
354 360 5.473504 CCAAACCAACTAAGTTATGCTCAGT 59.526 40.000 0.00 0.00 0.00 3.41
383 389 6.317789 ACAATTTGACACATTCTACCACAG 57.682 37.500 2.79 0.00 0.00 3.66
416 422 3.137544 TGCCCAGTCCAAAAGTAAGAGAA 59.862 43.478 0.00 0.00 0.00 2.87
424 430 1.479323 CATCCATGCCCAGTCCAAAAG 59.521 52.381 0.00 0.00 0.00 2.27
427 434 0.409092 AACATCCATGCCCAGTCCAA 59.591 50.000 0.00 0.00 0.00 3.53
429 436 1.097547 CGAACATCCATGCCCAGTCC 61.098 60.000 0.00 0.00 0.00 3.85
434 441 1.317613 TTATGCGAACATCCATGCCC 58.682 50.000 0.00 0.00 37.74 5.36
449 456 3.958147 ACCCCGGAAAGCCTTAATTTATG 59.042 43.478 0.73 0.00 0.00 1.90
457 464 1.639108 AGAATAACCCCGGAAAGCCTT 59.361 47.619 0.73 0.00 0.00 4.35
467 474 4.322801 CCATATCGGTGAGAGAATAACCCC 60.323 50.000 0.00 0.00 0.00 4.95
474 481 2.766263 ACAAGCCATATCGGTGAGAGAA 59.234 45.455 0.00 0.00 36.97 2.87
481 488 1.206132 TGACGAACAAGCCATATCGGT 59.794 47.619 0.00 0.00 39.49 4.69
482 489 1.934589 TGACGAACAAGCCATATCGG 58.065 50.000 0.00 0.00 39.49 4.18
483 490 2.930040 AGTTGACGAACAAGCCATATCG 59.070 45.455 0.00 0.00 39.30 2.92
485 492 6.706270 CCTTATAGTTGACGAACAAGCCATAT 59.294 38.462 0.00 0.00 39.30 1.78
489 496 4.251268 ACCTTATAGTTGACGAACAAGCC 58.749 43.478 0.00 0.00 39.30 4.35
496 503 5.416083 CCACATGAACCTTATAGTTGACGA 58.584 41.667 0.00 0.00 0.00 4.20
503 510 6.515272 AAAGTTGCCACATGAACCTTATAG 57.485 37.500 0.00 0.00 0.00 1.31
507 514 4.832266 TGATAAAGTTGCCACATGAACCTT 59.168 37.500 0.00 0.00 0.00 3.50
508 515 4.406456 TGATAAAGTTGCCACATGAACCT 58.594 39.130 0.00 0.00 0.00 3.50
509 516 4.782019 TGATAAAGTTGCCACATGAACC 57.218 40.909 0.00 0.00 0.00 3.62
512 519 5.945191 TGAGATTGATAAAGTTGCCACATGA 59.055 36.000 0.00 0.00 0.00 3.07
513 520 6.198650 TGAGATTGATAAAGTTGCCACATG 57.801 37.500 0.00 0.00 0.00 3.21
515 522 6.003326 TCTTGAGATTGATAAAGTTGCCACA 58.997 36.000 0.00 0.00 0.00 4.17
516 523 6.500684 TCTTGAGATTGATAAAGTTGCCAC 57.499 37.500 0.00 0.00 0.00 5.01
517 524 7.707624 AATCTTGAGATTGATAAAGTTGCCA 57.292 32.000 5.48 0.00 42.66 4.92
518 525 8.246180 TCAAATCTTGAGATTGATAAAGTTGCC 58.754 33.333 6.98 0.00 43.41 4.52
534 541 5.005740 CCATGAACACCTCTCAAATCTTGA 58.994 41.667 0.00 0.00 38.17 3.02
535 542 4.157289 CCCATGAACACCTCTCAAATCTTG 59.843 45.833 0.00 0.00 0.00 3.02
536 543 4.043310 TCCCATGAACACCTCTCAAATCTT 59.957 41.667 0.00 0.00 0.00 2.40
537 544 3.588842 TCCCATGAACACCTCTCAAATCT 59.411 43.478 0.00 0.00 0.00 2.40
538 545 3.944015 CTCCCATGAACACCTCTCAAATC 59.056 47.826 0.00 0.00 0.00 2.17
540 547 2.711009 ACTCCCATGAACACCTCTCAAA 59.289 45.455 0.00 0.00 0.00 2.69
541 548 2.338809 ACTCCCATGAACACCTCTCAA 58.661 47.619 0.00 0.00 0.00 3.02
542 549 2.030027 ACTCCCATGAACACCTCTCA 57.970 50.000 0.00 0.00 0.00 3.27
544 551 1.825474 CGTACTCCCATGAACACCTCT 59.175 52.381 0.00 0.00 0.00 3.69
545 552 1.822990 TCGTACTCCCATGAACACCTC 59.177 52.381 0.00 0.00 0.00 3.85
546 553 1.933021 TCGTACTCCCATGAACACCT 58.067 50.000 0.00 0.00 0.00 4.00
547 554 2.981859 ATCGTACTCCCATGAACACC 57.018 50.000 0.00 0.00 0.00 4.16
548 555 5.416947 ACTTAATCGTACTCCCATGAACAC 58.583 41.667 0.00 0.00 0.00 3.32
549 556 5.670792 ACTTAATCGTACTCCCATGAACA 57.329 39.130 0.00 0.00 0.00 3.18
550 557 7.924412 TCATAACTTAATCGTACTCCCATGAAC 59.076 37.037 0.00 0.00 0.00 3.18
551 558 8.014070 TCATAACTTAATCGTACTCCCATGAA 57.986 34.615 0.00 0.00 0.00 2.57
552 559 7.287005 ACTCATAACTTAATCGTACTCCCATGA 59.713 37.037 0.00 0.00 0.00 3.07
553 560 7.434492 ACTCATAACTTAATCGTACTCCCATG 58.566 38.462 0.00 0.00 0.00 3.66
554 561 7.598759 ACTCATAACTTAATCGTACTCCCAT 57.401 36.000 0.00 0.00 0.00 4.00
555 562 7.093640 ACAACTCATAACTTAATCGTACTCCCA 60.094 37.037 0.00 0.00 0.00 4.37
556 563 7.222224 CACAACTCATAACTTAATCGTACTCCC 59.778 40.741 0.00 0.00 0.00 4.30
563 1646 7.117241 ACACACACAACTCATAACTTAATCG 57.883 36.000 0.00 0.00 0.00 3.34
575 1658 7.080099 TCTCTATAAACGTACACACACAACTC 58.920 38.462 0.00 0.00 0.00 3.01
576 1659 6.973843 TCTCTATAAACGTACACACACAACT 58.026 36.000 0.00 0.00 0.00 3.16
578 1661 7.595604 TCATCTCTATAAACGTACACACACAA 58.404 34.615 0.00 0.00 0.00 3.33
581 1664 8.248253 ACATTCATCTCTATAAACGTACACACA 58.752 33.333 0.00 0.00 0.00 3.72
588 1671 6.293081 GCATGCACATTCATCTCTATAAACGT 60.293 38.462 14.21 0.00 0.00 3.99
597 1680 1.003116 GGACGCATGCACATTCATCTC 60.003 52.381 19.57 0.00 0.00 2.75
598 1681 1.019673 GGACGCATGCACATTCATCT 58.980 50.000 19.57 0.00 0.00 2.90
604 1687 0.657312 CAATACGGACGCATGCACAT 59.343 50.000 19.57 1.52 0.00 3.21
613 1696 2.587956 TCGAGAAACACAATACGGACG 58.412 47.619 0.00 0.00 0.00 4.79
621 1704 9.498307 GTTCTTTTTATTTCTCGAGAAACACAA 57.502 29.630 36.05 26.77 45.55 3.33
623 1706 9.717892 AAGTTCTTTTTATTTCTCGAGAAACAC 57.282 29.630 36.05 22.18 45.55 3.32
661 1744 7.856145 ACTGGTGATCAAATCATTCTCTTAC 57.144 36.000 0.00 0.00 42.04 2.34
671 1754 7.064134 TGTCGTGTAAATACTGGTGATCAAATC 59.936 37.037 0.00 0.00 0.00 2.17
702 1785 6.401796 GCCTTTGTTCATCAAAAGATGCATTC 60.402 38.462 0.00 0.00 44.08 2.67
844 1927 3.181448 GGCTATTTATTCAACCCCGGAGA 60.181 47.826 0.73 0.00 0.00 3.71
848 1931 4.398319 AGATGGCTATTTATTCAACCCCG 58.602 43.478 0.00 0.00 0.00 5.73
849 1932 6.208797 GGTTAGATGGCTATTTATTCAACCCC 59.791 42.308 0.00 0.00 0.00 4.95
852 1935 7.875971 CCAGGTTAGATGGCTATTTATTCAAC 58.124 38.462 0.00 0.00 0.00 3.18
883 1967 4.024893 CGTGTATATGGCTGTGGTGAATTC 60.025 45.833 0.00 0.00 0.00 2.17
895 1979 4.342772 CTTTTGTTGAGCGTGTATATGGC 58.657 43.478 0.00 0.00 0.00 4.40
898 1982 4.032900 CGAGCTTTTGTTGAGCGTGTATAT 59.967 41.667 0.00 0.00 44.71 0.86
899 1983 3.366724 CGAGCTTTTGTTGAGCGTGTATA 59.633 43.478 0.00 0.00 44.71 1.47
943 2027 4.192317 GTGTTGCTAGCTGCCTATTAAGT 58.808 43.478 17.23 0.00 42.00 2.24
948 2032 0.179073 CGGTGTTGCTAGCTGCCTAT 60.179 55.000 17.23 0.00 42.00 2.57
981 2065 2.894879 GTGCGTGTGCCTGTGTCA 60.895 61.111 0.00 0.00 41.78 3.58
983 2067 1.823470 ATTGTGCGTGTGCCTGTGT 60.823 52.632 0.00 0.00 41.78 3.72
984 2068 1.370778 CATTGTGCGTGTGCCTGTG 60.371 57.895 0.00 0.00 41.78 3.66
1278 2362 2.748251 CGGTATTTGGCCGTGGCA 60.748 61.111 13.76 0.00 43.84 4.92
1343 2427 3.487544 GGATCAGTTTATGCGCTTGAACC 60.488 47.826 22.06 13.64 0.00 3.62
1354 2438 1.138266 CACCCGGACGGATCAGTTTAT 59.862 52.381 13.13 0.00 37.50 1.40
1397 2496 0.528924 GCACACACATGCATGACCAT 59.471 50.000 32.75 12.50 45.39 3.55
1485 2584 4.389687 CCATTTATTCACTTGCTTGTTGCC 59.610 41.667 0.00 0.00 42.00 4.52
1509 2608 0.956633 TTCTGCAACGTAGACGGACT 59.043 50.000 7.04 0.00 44.95 3.85
1513 2612 2.657372 GTCTTCTTCTGCAACGTAGACG 59.343 50.000 0.00 0.00 46.33 4.18
1613 2717 4.968626 TGATCAAAACATACACACGCATC 58.031 39.130 0.00 0.00 0.00 3.91
1617 2721 6.183360 TGGATGATGATCAAAACATACACACG 60.183 38.462 16.52 0.00 30.03 4.49
1669 2836 2.153645 TGATCAACACTCATGCACACC 58.846 47.619 0.00 0.00 0.00 4.16
1710 2904 8.458843 CGTGAGACCTGGTTTCATATAATTTTT 58.541 33.333 21.29 0.00 29.77 1.94
1711 2905 7.067008 CCGTGAGACCTGGTTTCATATAATTTT 59.933 37.037 21.29 0.00 29.77 1.82
1712 2906 6.542370 CCGTGAGACCTGGTTTCATATAATTT 59.458 38.462 21.29 0.00 29.77 1.82
1713 2907 6.055588 CCGTGAGACCTGGTTTCATATAATT 58.944 40.000 21.29 0.00 29.77 1.40
1714 2908 5.130477 ACCGTGAGACCTGGTTTCATATAAT 59.870 40.000 21.29 5.34 29.77 1.28
1715 2909 4.468510 ACCGTGAGACCTGGTTTCATATAA 59.531 41.667 21.29 0.00 29.77 0.98
1716 2910 4.028131 ACCGTGAGACCTGGTTTCATATA 58.972 43.478 21.29 0.00 29.77 0.86
1717 2911 2.838202 ACCGTGAGACCTGGTTTCATAT 59.162 45.455 21.29 8.78 29.77 1.78
1718 2912 2.253610 ACCGTGAGACCTGGTTTCATA 58.746 47.619 21.29 0.00 29.77 2.15
1719 2913 1.056660 ACCGTGAGACCTGGTTTCAT 58.943 50.000 21.29 4.89 29.77 2.57
1720 2914 0.834612 AACCGTGAGACCTGGTTTCA 59.165 50.000 15.44 15.44 43.23 2.69
1721 2915 2.685100 CTAACCGTGAGACCTGGTTTC 58.315 52.381 10.29 10.29 43.23 2.78
1722 2916 1.270678 GCTAACCGTGAGACCTGGTTT 60.271 52.381 0.00 0.00 43.23 3.27
1724 2918 0.830444 TGCTAACCGTGAGACCTGGT 60.830 55.000 0.00 0.00 37.68 4.00
1725 2919 0.108615 CTGCTAACCGTGAGACCTGG 60.109 60.000 0.00 0.00 0.00 4.45
1726 2920 0.108615 CCTGCTAACCGTGAGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
1727 2921 0.542232 ACCTGCTAACCGTGAGACCT 60.542 55.000 0.00 0.00 0.00 3.85
1728 2922 0.389948 CACCTGCTAACCGTGAGACC 60.390 60.000 0.00 0.00 0.00 3.85
1729 2923 0.601558 TCACCTGCTAACCGTGAGAC 59.398 55.000 0.00 0.00 32.85 3.36
1730 2924 3.045518 TCACCTGCTAACCGTGAGA 57.954 52.632 0.00 0.00 32.85 3.27
1731 2925 3.425578 CTCACCTGCTAACCGTGAG 57.574 57.895 2.35 2.35 45.33 3.51
1732 2926 0.601558 GTCTCACCTGCTAACCGTGA 59.398 55.000 0.00 0.00 35.34 4.35
1733 2927 0.389948 GGTCTCACCTGCTAACCGTG 60.390 60.000 0.00 0.00 34.73 4.94
1734 2928 1.542187 GGGTCTCACCTGCTAACCGT 61.542 60.000 0.00 0.00 38.64 4.83
1735 2929 1.218316 GGGTCTCACCTGCTAACCG 59.782 63.158 0.00 0.00 38.64 4.44
1736 2930 1.218316 CGGGTCTCACCTGCTAACC 59.782 63.158 0.00 0.00 37.90 2.85
1737 2931 4.913126 CGGGTCTCACCTGCTAAC 57.087 61.111 0.00 0.00 37.90 2.34
1743 2937 0.972983 CATCAGGACGGGTCTCACCT 60.973 60.000 0.00 0.00 38.64 4.00
1744 2938 1.517832 CATCAGGACGGGTCTCACC 59.482 63.158 0.00 0.00 37.60 4.02
1745 2939 0.970937 TCCATCAGGACGGGTCTCAC 60.971 60.000 0.00 0.00 39.61 3.51
1746 2940 1.386550 TCCATCAGGACGGGTCTCA 59.613 57.895 0.00 0.00 39.61 3.27
1747 2941 4.356979 TCCATCAGGACGGGTCTC 57.643 61.111 0.00 0.00 39.61 3.36
1756 2950 1.066929 TGTCACGTGTCATCCATCAGG 60.067 52.381 16.51 0.00 0.00 3.86
1757 2951 2.368655 TGTCACGTGTCATCCATCAG 57.631 50.000 16.51 0.00 0.00 2.90
1758 2952 3.261580 GAATGTCACGTGTCATCCATCA 58.738 45.455 24.84 9.40 0.00 3.07
1759 2953 3.062639 GTGAATGTCACGTGTCATCCATC 59.937 47.826 24.84 19.34 37.67 3.51
1760 2954 3.002791 GTGAATGTCACGTGTCATCCAT 58.997 45.455 24.84 12.42 37.67 3.41
1761 2955 2.412870 GTGAATGTCACGTGTCATCCA 58.587 47.619 24.84 18.07 37.67 3.41
1772 2966 5.259832 TGCTTTGTGATTTGTGAATGTCA 57.740 34.783 0.00 0.00 0.00 3.58
1773 2967 5.346822 GGATGCTTTGTGATTTGTGAATGTC 59.653 40.000 0.00 0.00 0.00 3.06
1774 2968 5.232463 GGATGCTTTGTGATTTGTGAATGT 58.768 37.500 0.00 0.00 0.00 2.71
1775 2969 4.628333 GGGATGCTTTGTGATTTGTGAATG 59.372 41.667 0.00 0.00 0.00 2.67
1776 2970 4.322953 GGGGATGCTTTGTGATTTGTGAAT 60.323 41.667 0.00 0.00 0.00 2.57
1777 2971 3.006752 GGGGATGCTTTGTGATTTGTGAA 59.993 43.478 0.00 0.00 0.00 3.18
1778 2972 2.562298 GGGGATGCTTTGTGATTTGTGA 59.438 45.455 0.00 0.00 0.00 3.58
1779 2973 2.354003 GGGGGATGCTTTGTGATTTGTG 60.354 50.000 0.00 0.00 0.00 3.33
1780 2974 1.901833 GGGGGATGCTTTGTGATTTGT 59.098 47.619 0.00 0.00 0.00 2.83
1781 2975 1.901159 TGGGGGATGCTTTGTGATTTG 59.099 47.619 0.00 0.00 0.00 2.32
1782 2976 1.901833 GTGGGGGATGCTTTGTGATTT 59.098 47.619 0.00 0.00 0.00 2.17
1783 2977 1.560505 GTGGGGGATGCTTTGTGATT 58.439 50.000 0.00 0.00 0.00 2.57
1784 2978 0.324645 GGTGGGGGATGCTTTGTGAT 60.325 55.000 0.00 0.00 0.00 3.06
1785 2979 1.076549 GGTGGGGGATGCTTTGTGA 59.923 57.895 0.00 0.00 0.00 3.58
1786 2980 1.984026 GGGTGGGGGATGCTTTGTG 60.984 63.158 0.00 0.00 0.00 3.33
1787 2981 2.445155 GGGTGGGGGATGCTTTGT 59.555 61.111 0.00 0.00 0.00 2.83
1788 2982 2.364186 GGGGTGGGGGATGCTTTG 60.364 66.667 0.00 0.00 0.00 2.77
1789 2983 3.683518 GGGGGTGGGGGATGCTTT 61.684 66.667 0.00 0.00 0.00 3.51
1820 3014 2.901291 AGCATCTAATCTCTCTCCCCC 58.099 52.381 0.00 0.00 0.00 5.40
1821 3015 4.102367 ACAAAGCATCTAATCTCTCTCCCC 59.898 45.833 0.00 0.00 0.00 4.81
1822 3016 5.055812 CACAAAGCATCTAATCTCTCTCCC 58.944 45.833 0.00 0.00 0.00 4.30
1823 3017 5.911752 TCACAAAGCATCTAATCTCTCTCC 58.088 41.667 0.00 0.00 0.00 3.71
1824 3018 8.336806 CAAATCACAAAGCATCTAATCTCTCTC 58.663 37.037 0.00 0.00 0.00 3.20
1825 3019 7.828223 ACAAATCACAAAGCATCTAATCTCTCT 59.172 33.333 0.00 0.00 0.00 3.10
1826 3020 7.909121 CACAAATCACAAAGCATCTAATCTCTC 59.091 37.037 0.00 0.00 0.00 3.20
1827 3021 7.609146 TCACAAATCACAAAGCATCTAATCTCT 59.391 33.333 0.00 0.00 0.00 3.10
1828 3022 7.755591 TCACAAATCACAAAGCATCTAATCTC 58.244 34.615 0.00 0.00 0.00 2.75
1829 3023 7.692460 TCACAAATCACAAAGCATCTAATCT 57.308 32.000 0.00 0.00 0.00 2.40
1830 3024 8.922058 ATTCACAAATCACAAAGCATCTAATC 57.078 30.769 0.00 0.00 0.00 1.75
1831 3025 9.362539 GAATTCACAAATCACAAAGCATCTAAT 57.637 29.630 0.00 0.00 0.00 1.73
1832 3026 7.814107 GGAATTCACAAATCACAAAGCATCTAA 59.186 33.333 7.93 0.00 0.00 2.10
1833 3027 7.039853 TGGAATTCACAAATCACAAAGCATCTA 60.040 33.333 7.93 0.00 0.00 1.98
1834 3028 6.161381 GGAATTCACAAATCACAAAGCATCT 58.839 36.000 7.93 0.00 0.00 2.90
1835 3029 5.927689 TGGAATTCACAAATCACAAAGCATC 59.072 36.000 7.93 0.00 0.00 3.91
1836 3030 5.697633 GTGGAATTCACAAATCACAAAGCAT 59.302 36.000 7.93 0.00 45.39 3.79
1837 3031 5.049167 GTGGAATTCACAAATCACAAAGCA 58.951 37.500 7.93 0.00 45.39 3.91
1838 3032 4.148696 CGTGGAATTCACAAATCACAAAGC 59.851 41.667 7.93 0.00 46.36 3.51
1839 3033 5.173673 CACGTGGAATTCACAAATCACAAAG 59.826 40.000 7.95 0.00 46.36 2.77
1840 3034 5.039984 CACGTGGAATTCACAAATCACAAA 58.960 37.500 7.95 0.00 46.36 2.83
1841 3035 4.097135 ACACGTGGAATTCACAAATCACAA 59.903 37.500 21.57 0.00 46.36 3.33
1842 3036 3.629855 ACACGTGGAATTCACAAATCACA 59.370 39.130 21.57 0.00 46.36 3.58
1843 3037 4.219033 GACACGTGGAATTCACAAATCAC 58.781 43.478 21.57 4.16 46.36 3.06
1844 3038 3.879892 TGACACGTGGAATTCACAAATCA 59.120 39.130 21.57 6.74 46.36 2.57
1845 3039 4.481930 TGACACGTGGAATTCACAAATC 57.518 40.909 21.57 3.97 46.36 2.17
1846 3040 5.009510 TGAATGACACGTGGAATTCACAAAT 59.990 36.000 29.39 11.31 46.36 2.32
1847 3041 4.336713 TGAATGACACGTGGAATTCACAAA 59.663 37.500 29.39 16.20 46.36 2.83
1848 3042 3.879892 TGAATGACACGTGGAATTCACAA 59.120 39.130 29.39 16.45 46.36 3.33
1849 3043 3.471680 TGAATGACACGTGGAATTCACA 58.528 40.909 29.39 17.38 46.36 3.58
1850 3044 4.154015 TGATGAATGACACGTGGAATTCAC 59.846 41.667 32.68 27.18 40.71 3.18
1851 3045 4.322567 TGATGAATGACACGTGGAATTCA 58.677 39.130 32.37 32.37 41.76 2.57
1852 3046 4.201851 CCTGATGAATGACACGTGGAATTC 60.202 45.833 26.29 26.29 0.00 2.17
1853 3047 3.691118 CCTGATGAATGACACGTGGAATT 59.309 43.478 21.57 17.98 0.00 2.17
1854 3048 3.055167 TCCTGATGAATGACACGTGGAAT 60.055 43.478 21.57 9.98 0.00 3.01
1855 3049 2.301583 TCCTGATGAATGACACGTGGAA 59.698 45.455 21.57 7.77 0.00 3.53
1856 3050 1.899142 TCCTGATGAATGACACGTGGA 59.101 47.619 21.57 6.22 0.00 4.02
1857 3051 2.385013 TCCTGATGAATGACACGTGG 57.615 50.000 21.57 1.66 0.00 4.94
1858 3052 2.610833 CCATCCTGATGAATGACACGTG 59.389 50.000 15.48 15.48 41.20 4.49
1859 3053 2.420547 CCCATCCTGATGAATGACACGT 60.421 50.000 8.69 0.00 41.20 4.49
1860 3054 2.216046 CCCATCCTGATGAATGACACG 58.784 52.381 8.69 0.00 41.20 4.49
1861 3055 3.118112 AGACCCATCCTGATGAATGACAC 60.118 47.826 8.69 0.00 41.20 3.67
1862 3056 3.117745 AGACCCATCCTGATGAATGACA 58.882 45.455 8.69 0.00 41.20 3.58
1863 3057 3.737850 GAGACCCATCCTGATGAATGAC 58.262 50.000 8.69 0.00 41.20 3.06
1864 3058 2.366590 CGAGACCCATCCTGATGAATGA 59.633 50.000 8.69 0.00 41.20 2.57
1865 3059 2.763933 CGAGACCCATCCTGATGAATG 58.236 52.381 8.69 0.25 41.20 2.67
1866 3060 1.071385 GCGAGACCCATCCTGATGAAT 59.929 52.381 8.69 0.00 41.20 2.57
1867 3061 0.465705 GCGAGACCCATCCTGATGAA 59.534 55.000 8.69 0.00 41.20 2.57
1868 3062 0.687427 TGCGAGACCCATCCTGATGA 60.687 55.000 8.69 0.00 41.20 2.92
1869 3063 0.395686 ATGCGAGACCCATCCTGATG 59.604 55.000 0.00 0.00 38.51 3.07
1870 3064 0.395686 CATGCGAGACCCATCCTGAT 59.604 55.000 0.00 0.00 0.00 2.90
1871 3065 0.687427 TCATGCGAGACCCATCCTGA 60.687 55.000 0.00 0.00 0.00 3.86
1872 3066 0.249784 CTCATGCGAGACCCATCCTG 60.250 60.000 0.00 0.00 42.34 3.86
1873 3067 0.397675 TCTCATGCGAGACCCATCCT 60.398 55.000 0.00 0.00 43.55 3.24
1874 3068 2.127839 TCTCATGCGAGACCCATCC 58.872 57.895 0.00 0.00 43.55 3.51
1881 3075 0.323816 AGACCAGGTCTCATGCGAGA 60.324 55.000 17.31 0.00 46.28 4.04
1882 3076 2.197250 AGACCAGGTCTCATGCGAG 58.803 57.895 17.31 0.00 38.71 5.03
1883 3077 4.442038 AGACCAGGTCTCATGCGA 57.558 55.556 17.31 0.00 38.71 5.10
1890 3084 6.882768 AAAGAATTCTATGAGACCAGGTCT 57.117 37.500 23.18 23.18 46.42 3.85
1891 3085 6.540551 GGAAAAGAATTCTATGAGACCAGGTC 59.459 42.308 12.25 12.25 0.00 3.85
1892 3086 6.418946 GGAAAAGAATTCTATGAGACCAGGT 58.581 40.000 8.75 0.00 0.00 4.00
1893 3087 5.525378 CGGAAAAGAATTCTATGAGACCAGG 59.475 44.000 8.75 0.00 0.00 4.45
1894 3088 6.036517 CACGGAAAAGAATTCTATGAGACCAG 59.963 42.308 8.75 6.43 0.00 4.00
1895 3089 5.874810 CACGGAAAAGAATTCTATGAGACCA 59.125 40.000 8.75 0.00 0.00 4.02
1896 3090 5.875359 ACACGGAAAAGAATTCTATGAGACC 59.125 40.000 8.75 6.24 0.00 3.85
1897 3091 6.673316 GCACACGGAAAAGAATTCTATGAGAC 60.673 42.308 8.75 0.00 0.00 3.36
1898 3092 5.351465 GCACACGGAAAAGAATTCTATGAGA 59.649 40.000 8.75 0.00 0.00 3.27
1899 3093 5.122239 TGCACACGGAAAAGAATTCTATGAG 59.878 40.000 8.75 2.65 0.00 2.90
1900 3094 5.000591 TGCACACGGAAAAGAATTCTATGA 58.999 37.500 8.75 0.00 0.00 2.15
1901 3095 5.295431 TGCACACGGAAAAGAATTCTATG 57.705 39.130 8.75 3.70 0.00 2.23
1902 3096 5.647658 TCATGCACACGGAAAAGAATTCTAT 59.352 36.000 8.75 0.41 0.00 1.98
1903 3097 5.000591 TCATGCACACGGAAAAGAATTCTA 58.999 37.500 8.75 0.00 0.00 2.10
1904 3098 3.820467 TCATGCACACGGAAAAGAATTCT 59.180 39.130 0.88 0.88 0.00 2.40
1905 3099 4.159377 TCATGCACACGGAAAAGAATTC 57.841 40.909 0.00 0.00 0.00 2.17
1906 3100 3.057315 CCTCATGCACACGGAAAAGAATT 60.057 43.478 0.00 0.00 0.00 2.17
1907 3101 2.489329 CCTCATGCACACGGAAAAGAAT 59.511 45.455 0.00 0.00 0.00 2.40
1908 3102 1.879380 CCTCATGCACACGGAAAAGAA 59.121 47.619 0.00 0.00 0.00 2.52
1909 3103 1.522668 CCTCATGCACACGGAAAAGA 58.477 50.000 0.00 0.00 0.00 2.52
1910 3104 0.523072 CCCTCATGCACACGGAAAAG 59.477 55.000 0.00 0.00 0.00 2.27
1911 3105 1.523154 GCCCTCATGCACACGGAAAA 61.523 55.000 0.00 0.00 0.00 2.29
1912 3106 1.971167 GCCCTCATGCACACGGAAA 60.971 57.895 0.00 0.00 0.00 3.13
1913 3107 2.359850 GCCCTCATGCACACGGAA 60.360 61.111 0.00 0.00 0.00 4.30
1914 3108 1.621672 TATGCCCTCATGCACACGGA 61.622 55.000 0.00 0.00 45.48 4.69
1915 3109 0.747644 TTATGCCCTCATGCACACGG 60.748 55.000 0.00 0.00 45.48 4.94
1916 3110 1.093972 TTTATGCCCTCATGCACACG 58.906 50.000 0.00 0.00 45.48 4.49
1917 3111 2.689471 TGATTTATGCCCTCATGCACAC 59.311 45.455 0.00 0.00 45.48 3.82
1918 3112 3.015675 TGATTTATGCCCTCATGCACA 57.984 42.857 0.00 0.00 45.48 4.57
1919 3113 4.595762 AATGATTTATGCCCTCATGCAC 57.404 40.909 0.00 0.00 45.48 4.57
1920 3114 8.598202 ATTATAATGATTTATGCCCTCATGCA 57.402 30.769 0.00 0.00 46.94 3.96
1984 3178 3.990092 TGTACTGCTAGTTGAACACTGG 58.010 45.455 0.00 0.00 35.97 4.00
1999 3193 4.637091 TCATCCACTTGATTGCATGTACTG 59.363 41.667 0.00 0.00 31.87 2.74
2000 3194 4.847198 TCATCCACTTGATTGCATGTACT 58.153 39.130 0.00 0.00 31.87 2.73
2001 3195 5.335127 GTTCATCCACTTGATTGCATGTAC 58.665 41.667 0.00 0.00 31.87 2.90
2018 3212 3.182967 CAACTGACTCTAGCCGTTCATC 58.817 50.000 0.00 0.00 0.00 2.92
2022 3216 2.364324 TCAACAACTGACTCTAGCCGTT 59.636 45.455 0.00 0.00 0.00 4.44
2027 3221 8.660373 GGTTATTTGATCAACAACTGACTCTAG 58.340 37.037 22.26 0.00 36.69 2.43
2034 3228 8.815141 TTTGATGGTTATTTGATCAACAACTG 57.185 30.769 22.26 0.00 36.16 3.16
2035 3229 9.643693 GATTTGATGGTTATTTGATCAACAACT 57.356 29.630 22.26 10.89 36.16 3.16
2045 3239 9.632807 TTTTTACTCCGATTTGATGGTTATTTG 57.367 29.630 0.00 0.00 0.00 2.32
2061 3255 8.009974 CACTGTAGTTCAAATCTTTTTACTCCG 58.990 37.037 0.00 0.00 0.00 4.63
2062 3256 8.290325 CCACTGTAGTTCAAATCTTTTTACTCC 58.710 37.037 0.00 0.00 0.00 3.85
2072 3266 3.000727 CGGACCCACTGTAGTTCAAATC 58.999 50.000 0.00 0.00 0.00 2.17
2074 3268 1.071071 CCGGACCCACTGTAGTTCAAA 59.929 52.381 0.00 0.00 0.00 2.69
2075 3269 0.682852 CCGGACCCACTGTAGTTCAA 59.317 55.000 0.00 0.00 0.00 2.69
2083 3277 1.227263 CGAATAGCCGGACCCACTG 60.227 63.158 5.05 0.00 0.00 3.66
2085 3279 1.520787 CACGAATAGCCGGACCCAC 60.521 63.158 5.05 0.00 0.00 4.61
2092 3286 4.030306 GCTTTATACGATCACGAATAGCCG 59.970 45.833 0.00 0.00 42.66 5.52
2096 3290 8.562052 TGTTAGAGCTTTATACGATCACGAATA 58.438 33.333 0.00 0.00 42.66 1.75
2102 3296 6.322969 TCCCTTGTTAGAGCTTTATACGATCA 59.677 38.462 0.00 0.00 0.00 2.92
2149 3343 9.104965 GCACACAACAATAGATAACCTACATAA 57.895 33.333 0.00 0.00 0.00 1.90
2156 3350 6.035843 CCAATGCACACAACAATAGATAACC 58.964 40.000 0.00 0.00 0.00 2.85
2165 3359 3.668447 ACAAAACCAATGCACACAACAA 58.332 36.364 0.00 0.00 0.00 2.83
2166 3360 3.325293 ACAAAACCAATGCACACAACA 57.675 38.095 0.00 0.00 0.00 3.33
2172 3366 1.857837 CCACGAACAAAACCAATGCAC 59.142 47.619 0.00 0.00 0.00 4.57
2188 3382 4.062293 TGGTTGATGAAGACTAAACCACG 58.938 43.478 1.55 0.00 44.00 4.94
2210 3404 8.347004 TCACATACACACCATCATAAACAATT 57.653 30.769 0.00 0.00 0.00 2.32
2290 3488 1.739371 GCGAGGAGGTGTGTGTTATCC 60.739 57.143 0.00 0.00 0.00 2.59
2299 3497 3.003113 GCGTAAGGCGAGGAGGTGT 62.003 63.158 0.00 0.00 44.77 4.16
2311 3509 2.002586 CAGACTGGAACCATGCGTAAG 58.997 52.381 0.00 0.00 43.44 2.34
2329 3527 6.751425 TGTCAAAAACAACAAAGTCATAGCAG 59.249 34.615 0.00 0.00 34.03 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.