>input_sequence_82609
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---ATGAGGTCACCGGCTGCCATCCTCTTCCTCCTCGCCGTCGTTGTCGCCGGCGCGGGCGCGGCGTCCGCGTTTGGATC
CGAGAAGCCGCCGACCGTGGCCGTAGGCGTCGTCATGCCGGCGGACCCTCGCGGGCCGATGCTTGCGCGCTTCGCGGTGC
TGGTGTACAGCCTGAGCCGGAACGCCAAGCTGACGTACGCCGGCGTGTCTGGCGTCGACCAGCGCCCCGACAAGGGCGGT
GTCAGGTACCAGATGGTGGTCACCGCCGTCGACGCCGGCGGTGCCACGGCCAAATACCGGGCGGTCATCTGGGGGGTCCC
CGAGACCTCGCGGTGGACGCTTCTGCGGTTCAAGCGCATAAACTGA----------------------------------
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>chr4A_1_TraesCS4A01G014900
TTTTTACATACACCATGAGCATGTTTTTCACAAATTAGTAAAAAATAAATGTTTATTTTTGGAACATTTTTTAAATATTA
CAAAAAGGAGGGAAAAAATAACCCGTATGTTGCTACTCGCAACGAGCAGACTATC---GTCAGACATCGTAGTGGAACGG
CTCACACCGGGGGAGATGTGGGCGACGGCTGTGTTGCATCACACAACAGGCGACATA--GACGGTCCCATGTTCTCGGCT
TATTTTCTTTTCTTTTTCTTCCAGGCATGTGCCATAAAATGCAACAAAGCAAGTTTTTCATTTACTTTTTAAAAAGTTTC
CATTATTCATCGCTGCATGAACTTTGTACGGCATGACAGACTGAGCATAACTTAGTTGGTTTGGTTTCCTGTGGTAGAAT
GTGTCAAATTGTATTTAAATTTTCTCTTAC-TTTTGGACTGGGCATGGATGTTCGCATAAATTAAGGCTTTCCGGGGTTA
TTCTCTCACCGATATGGCTTGTTCGTCAACTATAAGGTTCATGTGGCAACTTTATCAATCTCAAGATTTGAGAGGTGTTC
ATG-----------------------------------------------------------------------------
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---------------------------------------GGAGTACGATTAAGTTATGAGTTGTGTGTGTACGTTTATAG
AGATGAATGTGCATGCGTCCGTATTGTGTTTCTCGAGAAATAAAAAGAACTTTGTACAGTAGTGTAAGAGAATGATTTGA
TCACCAGTATTTACACGACAAAAAGAATGCATCTTTTGATGAACAAAGGCGTACGAAACACTCGTTGGTACGCTGTTTAA
ATCTGACGGAACCGCGTACGCACTTTTGTTTCCTGAGATGTTAATTAAAGTTACCACTCCGCAAACCTTCCTTGCTTCAG
TTTCACTCTCCGGGGT-TGAATAAATAGCCATCTAACCTGGCCTATGAATTCACCACAGCCATATACACGCTCAACAAAA
GCTCGCCAGTTAGCTTAGCTAGCTAGACTTAATAGGCAGCTAGCAACACCGTAGCTAGCTAGCCTGACACAGGCACACGC
ACAATGAGGTCACCGGCTGCCATCCTCTTCCTCCTCGCCGTCGTTGTCGCCGGCGCGGGCGCGGCGTCCGCGTTTGGATC
CGAGAAGCCGCCGACCGTGGCCGTAGGCGTCGTCATGCCGGCGGACCCTCGCGGGCCGATGCTTGCGCGCTTCGCGGTGC
TGGTGTACAGCCTGAGCCGGAACGCCAAGCTGACGTACGCCGGCGTGTCTGGCGTCGACCAGCGCCCCGACAAGGGCGGT
GTCAGGTACCAGATGGTGGTCACCGCCGTCGACGCCGGCGGTGCCACGGCCAAATACCGGGCGGTCATCTGGGGGGTCCC
CGAGACCTCGCGGTGGACGCTTCTGCGGTTCAAGCGCATAAACTGATCCGTCCGGG---------------TGCGTGCAC
GTAGCAGGACGGGGGATGGTCATGCATGTGTGTGCACGAGCGCATACTAACAGTATATGCATCTTGCCACTATATATGAG
CGTACTACTGTACAACTACATCAGGCAACAAGCAAGTGAATAAATGGAGTCCGTCTACGTTGCAGAAGAAGACTGATGAT
TTATAAGTGTGTA-----TGTGTCAATTCAGGAATGTTGATGGTAAAGTTTTTGTGTAAGCCTTGAGTAGCTTGAGGATG
CG------------TGTGTATGTTTTGATC--------------------------------------------------
-ATCATCCAGAAGTACTCTTTTGTGTGTATCCATGG---------------------------GTGTGCATGAGTGTTGA
TCATTCATGTGTGTGCATGGAAAAAAAATTATATGAAACCAGGTCTCACGGTTAGCAGGTGAGACCCGTCCTGATGGATG
ACACGTGACATTCACAAATCACAAAGCATCCCCCACCCCCCACTTAAAATCAGGGGGGAGAGAGATTAGATGCTTTGTGA
TTTGTGAATTCCACGTGTCATTCATCAGGATGGGTCTCGCATGAGACCTGGTCTCATAGAATTCTTTTCCGTGTGCATGA
GGGCATAAATCATTATAATATTATATGCATGCATCTTGCCACTAGTATAGGCATGTACCAGTGTTCAACTAGCAGTACAT
GCAATCAAGTGGATGAACGGCTAGAGTCAGTTGTTGATCAAATAACCATCAAATCGGAGTAAAAAGATTTGAACTACAGT
GGGTCCGGCTATTCGTGATCGTATAAAGCTCTAACAAGGGACACATGGTAAATCTTTATCTGTTATGTAGGTTATCTATT
GTTGTGTGCATTGGTTTTGTTCGTGGTTTAGTCTTCATCAACCAATTGTTTATGATGGTGTGTATGTGATTGA----GCA
GGTTGTCAAGGAGCCTTTTGCTACACATGGATGGCGGCATAGTTCATGGATAACACACACCTCCTCGCCTTACGCATGGT
TCCAGTCTGCTATGACTTTGTTGTTTTTGACATTTTATAT-
>chr4D_90
GGGACAT-------------------------------------------------------------------------
----------------AACAACCCATATGTTGCTATTCGCAATGAGCAGACTATGATGGTCAGACATCATAGTGGAACGG
CTCACACGGGGGTAGATGTGGGTGACGGCTGCGTTGTGTCACACAACAGGCGACATATAGACGGTTCTATGTTCTCGGCT
TATTTTCTTTTCCTTTTCTTCTGGGGCTGTACCGTAAAATGCAACAACACAATTTTTTCTTTCTTTTTA-AACAAGTTTT
CATTATTCATCGCTACATGAAGTTTGTACAGTATGACAGTCTGAGCATAACTTAGTTGGTTTGGTTTCTTGTGGAAGAAT
ATGTCAAACTGTATTTAAATTCTCTCTTAAATTGTAGACTTGGCATGGATGTTCG-ATAAATTTAGGCTTTCCCGGGTTA
GTCTCTCGGTGGTATAGCTTGTCCGTCAATTATGGAGTGAAGTCTGAAATAAACCCTGAGATTGTAGAAGCCGATGTAAA
TGAATCCTCACCTTTAAATCCCTGAAGTTTGTACCCCGTATTTACAGATCCCAGCCAATCCATACTTTGTATGAGTAAAA
TCCTGTTTGCTGAAATAGGAAAGGCGCGATCCCAGCCGGGATTCATTTCTACTGTCGCTTACTGCATGGGCCGCCCATCT
GTCATATGTATCTCCTTCCCCAATCCCCTCAATACCAACTGCGAGGAGGCGCGGCTGCACTAGAGTTCAAGGTGTTCGAT
CTGCTCCCAGAAAATGACCTACTTTCCTTGGGCACGGTTCTGAGCACCATGGCCATGCGCAGCCGATAGATCGATTCTAG
CCGCCAGCTAATCGATGTGTGCAAGTACACAAAAGAAACAAACGGACGTCGGGAAAAAGGCGAAGCTCGTACTCGGCCTT
TGGCGCCTCCTCCGACTTGACGTGCCCATGCGACACCGTCAGTAGCTGTCAGAAGACCCCTGCAACGTCCAGACACGCAG
CCACCGTGAGCGCGACCAGCTGCTTGGCGACGCCCTCCGCGCGCCTCTGAAGCTCCTCATCCGGCCCGTCCAGTTCGTGG
ACGGTGTCGGCAACTGCGGTGGCGTGGATACCGCCGACGGTGTCATGAGCGGCTTGGTTGTCCCTGAACTTCGTAAGGCG
TGAGGTGTGGTCGGCGAAGTGGGCCCATGCTACCAAACGCTGTCGTACTGCTGGTGCCACTCGCCGGCGCAGCGCCGCGT
ACTGCCGCGGCTGGCGATGCTCCCCGCCACAAGCAGCCGCTGCCCTCGCTGGCCATCACCATGTCTGGGGTCGTCCGGTG
GCTGCCATCTTGTGCTGCTCCCCTCTGCTAAAGCTAGTCGTATTGAGATGGGAACTAGGAAAAATGGCTATGATGTGTTG
ACCCACACCACAGTGAGAGAAGGGAGTACCCGGCCAGGATTATGCTTTTCCCGGTCTGCCAAACATATCTAAGGTTCGGA
TAAACCGAGATCAGAAAGGTTAGGGCACAGATTTCAGGAATTTGGAGGTGAGGGTTCATTTGCGTCGACCTCTACAACCT
TAAAGTTCATTTCAGACTTCACTCTCAACTATGAGGTTCGGAGTATGATTAAGTTATAGGCTGCGTGTGTGCGTTTATAA
GGATGAGTGTGCATGTGTCCTTACTATGTTTCTCAAGAAATAAAAAGAACTGTGTACAGTAGTATAAGAGAATTATTTGA
TCACCAGTATTTACACGACAAAAAAC-TGCATCTTTTGATGAACAAAGGCGTACGAAACACTCGTTGCTACGCTGTTTAA
ATCTGACGGAACCGCGTACGCACTTTTGTTTCCTGAGATGTTAATTAAAGTTACCACTCCGCAAACCTTCC-TTCTTCAG
TTTCACACTCAAGGAGCTGAATAAATAGCCATCTAACCTGGCCTATCAATTCACCACAACC--ATACACGCTCAACAAAA
GCTCGACACTAAGCTTAGCTAGCTAGCCTTACTAGGCAGCTAGCAACACCGTAGCTAGCTAGCCCG--ACAGGCACACGC
ACAATGAGGTCACCGGCTGCCATCCTCTTCCTCCTCGCAGTCCTCGTCGCCGGAGCGGGCGCGGCGTTCGCCTTTGGATC
CGAGAAGCCGCCGACCGTAGCCGTGGGCGTCGTCATGCCGGCCGACCCCCGCGGGCCGATGCTCGCGCGCTTCGCGGTGC
TGGTGTACGGCCTGAGCCGGAACGCCAAGCTGACGTACGCCGGCGTCTCCGGCGTTGACCAGCGCCCTGACAAGGCCGGC
ATCAGGTACCAGATGGTGGTCACCGCCGTCGAGGACGGCGGCGCCACAGCCAAGTACCGGGCGGTGATCTGGGGAGTCCC
CGAGACCTCGCGGTGGACGCTTCTGCAGTTCAAGCGCGTAAACTGATCGGGCCGGGGGCGGTGCGTGTACACTCGTGCAC
GTAACAGGACGGGGG-TGGTCATGCATGCGTGTGCACGAGCGCATACTAACAGTATATGCATCTTGCCACTATATATAAG
CATACTACTGTACAACTACATCATGCAACAAGCAAGTGAATAAATGGCGTCGGTCTACGTTGCAGAAGAAAACTGATGAT
TTATAAGTGTGTA-----TGTGTCAATTCAGGAATGTTGATGGCAAAGTTTTTGTGTAAGCCTTGAGTAGCTTGAGAATG
TG------------TGTGTATGTTTGATCGTCATGGTGCTTTATCTATAAAACCGGGCGAAAGCCTGTTTCGAGATGTTT
AATCATCCAGAAGCACTCTTTTGTGTGTATCCATGTGTGTGCATGAGTGTTTTTTTTACGGGTGTGTGCATGAGTGTTGA
TCATTCGTGTGTGTGCATG-------------------------------------------------------------
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-------------------------------------------------------------------------------A
GCGCATAAAGCATTATAATATTATATGCATGCATCTTGCCACTAGTATAGGCATGTAGCAGTGTTCAACTAG---TACAT
GCAATCAAGTGAATGGACGGTTAGAGTTGGTTGTTGATAAAATAACCATCGAATTAGAGTAAAAAAA--TGAACTATAAT
GGGTCTGGCGATTCGCGATCGTATAAAGCTCTAACAAGGGACACATGGTAAAACTTTATCCCCTATGTATGTTATCTACC
GTTGTATGCATTGGTTTTGTTTGTGGTTTAGTGTTCATCAACCGATTGTTTATGATGGTGTGTATGTGATTGAGCATGCA
GGTGGTCAAGGAGCCTTTTGCTACACATGGATGGCGGCATAGTTCATAGATAACACCCACTTCCTCGCGTTACGCATGGT
TCCAGTGTGCTATGACTTTGTTGTTTATGGCATTTTTATAT
>chr4B_698
AAAAA---------------------------------------------------------------------------
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-------------------------AATGCATCTTTTGATGAACAGAGGCGTACGAAACACTCGTTTGTACGCTGTTTAA
ATCTGACGGAACCGCGTACGCACTTTTGTTTCCTGAGATGTTAATTAAAGTTACCACTCCGAAAACCTTCCTTGCTTCAG
TTTCACACTCAAGGAGCTGAATAAATAGCCATCTAACCTGGCCTATCAATTCACCA--ACC--ATACACGCTCAACAAAA
GCCCGCCACTAAGCTTAGCTAGCTAGCCTTACTACGCAGCTAGCAATACCTTATCTAGCTAGCCCA--ACAGGCACACGC
ACAATGAGGTCATCGGCTGCCATCCTCTTGCTCCTCGCCGTCGTTGTCGCCGGCGCGGGCCCGGCGTCCGCGTTTGGATC
CGAGAAGCCGCCGACCGTAGCTGTTGGCGTCGTCATGCCGGAGGATCCTCGCGGACCGATGCTCGCGCGCTTCGCGGTGC
TGGTGTACAGCCTGAGCCGGAATGCCAAGCTGACGTACGCCGGCGTCTCCGGCGTTGACCAGCGCCCCGACAAGGGCGGC
ATCAGGTACCAGATGGTGATCACCGCCGTCGACGCCGGCGGCGCCACAGCCAAGTACCGGGCGGTCATCTGGGGAGTCCC
TGAGACCTCGCGGTGGACGCTTCTGCAGTTCAAGCGCGTAAACTGATCGGGCCGGGAGCGGTGCGTGTACATGCGTGCAC
GTAGCAGGACGGGGG-TGGTCATGCATGCGTGTGCACGAGCGCATACTAACAGTATATGCATCTTGCCACTATATATGAG
CGCACTACTGTACAACTACATCATGCAACAAGCAAGTGAATAAATGGCGTCGGTCTACGTTGCAAAAGAATACTGATGAT
TTATAAGTGTGTACTCTATGTGTCTGTTCAGGAATGTTGATGGTAAAGAGTTTGTGTACGCCTTGTGTAGCTTGAGTATG
ATAGTGAGGATGTTTGTGTATGTTTTGATC--------------------------------------------------
-ATCATCCAGAAGCATTCTTTTGTGTGCATCCTT---------------------------GTGTGTGCATGAGTGTTCA
TCATCCATGTGTGTGCATG-------------------------------------------------------------
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>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--S-----S----------S------S-----------S-------------S-----------
-------S----S---------S--------S----SS---------------------------S-S------------
------------S--------SS--SS---S--S-------------SS---S------S--SSS---SS--S------S
--------------S------S-------S-S-------S----------------------------S-----S-----
S-------S------------S-------S---S-S----S--------------S-------S---------S------
S------SSS-S---S------S------S---SSS--SS-SSSS-S--SSSSSS-SSSSSSSSS-SSS-SSSSSSSSSS
SSS-----------------------------------------------------------------------------
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---------------------------------------------S-----------SS-S--S------S--------S
S-----S--------S----S--S-S--------S----------------S-----------S---------S------
------------------------S-------------------------------------------------------
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------S---SS--SS------------------------------S-----------S--SS-----------------
--------S-S---------------S----S--------------------------------S-SS------------
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------------------S-----S--------------------------------------S----------------
----------------------------------------------S--S-----S-----------------------S
S----------------------------------------S-----S-----S--------------------S-----
--------------------------S----------S----------S-S-----------------------------
---------------S------------S---------------------------------------------------
-----------------------S-----------------------S---S------------------S---------
----------------------------------------------------------------------------S---
S-------------------------------------------------------------------------------
-------------S---------------------S--------------------------------------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-S-------S-----------------------------------------------S--------------SSS-----
-----------S---S----S------SS---------S-----------S---SS---------S-SS-------S-S-
-----S---S-----S------------------------------------S-------SSS------S--------SS
-----S---------------S----------S----------S------------------------------------
---S-------------------------------------------S--------S---S-------S-----------
------S-------------------S--S------SSSS-
>forward_226
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----------------------------------------------AACAGGCGACATAGACGGTC--------------
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>reverse_2919
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--------------------------------------CCAGGTCTCACGGTTAGCAG----------------------
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