Multiple sequence alignment - TraesCS4A01G011900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G011900 chr4A 100.000 2955 0 0 1 2955 6884047 6887001 0.000000e+00 5457
1 TraesCS4A01G011900 chr4A 100.000 2152 0 0 3170 5321 6887216 6889367 0.000000e+00 3975
2 TraesCS4A01G011900 chr4A 100.000 787 0 0 1 787 6877767 6878553 0.000000e+00 1454
3 TraesCS4A01G011900 chr4A 100.000 177 0 0 3390 3566 6887216 6887392 1.430000e-85 327
4 TraesCS4A01G011900 chr4A 100.000 177 0 0 3170 3346 6887436 6887612 1.430000e-85 327
5 TraesCS4A01G011900 chr4D 95.331 2249 55 17 544 2754 462833198 462835434 0.000000e+00 3526
6 TraesCS4A01G011900 chr4D 97.521 1210 21 3 3374 4583 462835419 462836619 0.000000e+00 2060
7 TraesCS4A01G011900 chr4D 92.109 659 24 13 4688 5321 462836618 462837273 0.000000e+00 904
8 TraesCS4A01G011900 chr4D 100.000 177 0 0 3170 3346 462835435 462835611 1.430000e-85 327
9 TraesCS4A01G011900 chr4D 97.222 108 3 0 4582 4689 419491638 419491531 3.270000e-42 183
10 TraesCS4A01G011900 chr4B 92.562 1210 68 11 3377 4581 578043408 578042216 0.000000e+00 1716
11 TraesCS4A01G011900 chr4B 86.634 1010 95 24 1352 2348 578044867 578043885 0.000000e+00 1081
12 TraesCS4A01G011900 chr4B 89.053 676 35 17 564 1228 578045733 578045086 0.000000e+00 802
13 TraesCS4A01G011900 chr4B 90.315 413 22 8 2347 2754 578043795 578043396 4.720000e-145 525
14 TraesCS4A01G011900 chr4B 86.089 381 28 7 4943 5321 578041888 578041531 2.320000e-103 387
15 TraesCS4A01G011900 chr4B 99.479 192 1 0 2752 2943 545868207 545868016 3.050000e-92 350
16 TraesCS4A01G011900 chr4B 97.990 199 2 2 2750 2947 249050241 249050044 1.420000e-90 344
17 TraesCS4A01G011900 chr3D 90.814 381 23 3 1 369 407741600 407741980 2.860000e-137 499
18 TraesCS4A01G011900 chr6D 85.455 495 39 14 37 519 224776423 224775950 8.010000e-133 484
19 TraesCS4A01G011900 chr6D 75.190 395 96 2 1 394 364908816 364909209 9.100000e-43 185
20 TraesCS4A01G011900 chr2A 97.129 209 4 2 2742 2950 90524350 90524556 8.480000e-93 351
21 TraesCS4A01G011900 chr2A 97.980 198 4 0 2744 2941 362436455 362436652 1.420000e-90 344
22 TraesCS4A01G011900 chr2A 96.364 110 4 0 4581 4690 723989890 723989999 1.180000e-41 182
23 TraesCS4A01G011900 chr2A 90.698 129 10 2 4569 4696 59161307 59161180 2.550000e-38 171
24 TraesCS4A01G011900 chr7A 98.485 198 3 0 2748 2945 729274023 729274220 3.050000e-92 350
25 TraesCS4A01G011900 chr3B 98.974 195 2 0 2754 2948 642821353 642821159 3.050000e-92 350
26 TraesCS4A01G011900 chr3B 74.101 417 98 7 1 415 59162183 59162591 4.260000e-36 163
27 TraesCS4A01G011900 chr6A 98.485 198 1 2 2754 2950 70421117 70420921 1.100000e-91 348
28 TraesCS4A01G011900 chr6A 90.698 129 12 0 4569 4697 499656058 499656186 7.080000e-39 172
29 TraesCS4A01G011900 chr3A 98.974 195 1 1 2749 2942 529616140 529616334 1.100000e-91 348
30 TraesCS4A01G011900 chr3A 95.495 111 5 0 4579 4689 697472451 697472341 1.520000e-40 178
31 TraesCS4A01G011900 chr5B 96.618 207 3 4 2736 2939 387366807 387366602 1.840000e-89 340
32 TraesCS4A01G011900 chr5B 86.592 179 24 0 1879 2057 610132132 610131954 1.170000e-46 198
33 TraesCS4A01G011900 chr5D 87.636 275 24 6 13 278 510464144 510464417 1.440000e-80 311
34 TraesCS4A01G011900 chr6B 76.341 410 91 6 1 408 549717602 549718007 1.160000e-51 215
35 TraesCS4A01G011900 chr7B 94.872 117 6 0 4582 4698 750444690 750444574 3.270000e-42 183
36 TraesCS4A01G011900 chr7B 90.698 129 12 0 4569 4697 735980071 735980199 7.080000e-39 172
37 TraesCS4A01G011900 chr7D 92.126 127 8 2 4563 4689 423305098 423304974 1.520000e-40 178
38 TraesCS4A01G011900 chr2D 95.413 109 5 0 4581 4689 326217476 326217584 1.970000e-39 174
39 TraesCS4A01G011900 chr5A 75.424 236 51 6 1 232 502602191 502602423 2.030000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G011900 chr4A 6884047 6889367 5320 False 2521.50 5457 100.00000 1 5321 4 chr4A.!!$F2 5320
1 TraesCS4A01G011900 chr4A 6877767 6878553 786 False 1454.00 1454 100.00000 1 787 1 chr4A.!!$F1 786
2 TraesCS4A01G011900 chr4D 462833198 462837273 4075 False 1704.25 3526 96.24025 544 5321 4 chr4D.!!$F1 4777
3 TraesCS4A01G011900 chr4B 578041531 578045733 4202 True 902.20 1716 88.93060 564 5321 5 chr4B.!!$R3 4757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 824 0.745468 GAAACGGATAGAGCGGTCCT 59.255 55.0 11.73 0.0 32.19 3.85 F
1440 1585 0.390860 GCTGCGGACTGTAGGATGAT 59.609 55.0 0.00 0.0 0.00 2.45 F
2047 2205 0.244721 TCTGAGTGACATGGTCAGCG 59.755 55.0 0.00 0.0 43.57 5.18 F
2860 3114 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.0 0.00 0.0 37.28 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 1994 0.032678 CGGAGATCGGATGGTTCTGG 59.967 60.0 0.00 0.00 34.75 3.86 R
3432 3690 0.109723 TTGGGTAGCCACTTTCGCTT 59.890 50.0 14.60 0.00 37.79 4.68 R
3433 3691 0.605589 GTTGGGTAGCCACTTTCGCT 60.606 55.0 14.60 0.00 40.45 4.93 R
4418 4676 0.959553 CTGGACACTGGTACTGTCGT 59.040 55.0 7.43 2.58 38.84 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
811 821 1.135083 CACAGAAACGGATAGAGCGGT 60.135 52.381 0.00 0.00 0.00 5.68
814 824 0.745468 GAAACGGATAGAGCGGTCCT 59.255 55.000 11.73 0.00 32.19 3.85
818 828 1.133853 ACGGATAGAGCGGTCCTACTT 60.134 52.381 11.73 0.00 32.19 2.24
1131 1153 1.140252 GCACCCTTTATCCGCTTCCTA 59.860 52.381 0.00 0.00 0.00 2.94
1132 1154 2.224548 GCACCCTTTATCCGCTTCCTAT 60.225 50.000 0.00 0.00 0.00 2.57
1133 1155 3.665190 CACCCTTTATCCGCTTCCTATC 58.335 50.000 0.00 0.00 0.00 2.08
1134 1156 3.071023 CACCCTTTATCCGCTTCCTATCA 59.929 47.826 0.00 0.00 0.00 2.15
1135 1157 3.910627 ACCCTTTATCCGCTTCCTATCAT 59.089 43.478 0.00 0.00 0.00 2.45
1136 1158 4.020128 ACCCTTTATCCGCTTCCTATCATC 60.020 45.833 0.00 0.00 0.00 2.92
1137 1159 4.508662 CCTTTATCCGCTTCCTATCATCC 58.491 47.826 0.00 0.00 0.00 3.51
1138 1160 4.223923 CCTTTATCCGCTTCCTATCATCCT 59.776 45.833 0.00 0.00 0.00 3.24
1179 1201 4.003788 CGGGTCCGTGGACTGCTT 62.004 66.667 17.99 0.00 44.04 3.91
1180 1202 2.642254 CGGGTCCGTGGACTGCTTA 61.642 63.158 17.99 0.00 44.04 3.09
1181 1203 1.079336 GGGTCCGTGGACTGCTTAC 60.079 63.158 17.99 1.01 44.04 2.34
1199 1224 4.083271 GCTTACACTGGTAGCTTTTCTTGG 60.083 45.833 0.00 0.00 0.00 3.61
1233 1258 5.968254 AGGGATTTCGTCTTCTTACTTCTC 58.032 41.667 0.00 0.00 0.00 2.87
1321 1463 5.537188 TGTGGAATTGTTGTTGGCTAATTC 58.463 37.500 0.00 0.00 38.28 2.17
1347 1489 5.454520 CAATTATTACCGGTTTATTCGCCC 58.545 41.667 15.04 0.00 0.00 6.13
1427 1572 2.963432 AGAAATCCAAAAATGCTGCGG 58.037 42.857 0.00 0.00 0.00 5.69
1439 1584 0.970427 TGCTGCGGACTGTAGGATGA 60.970 55.000 0.00 0.00 0.00 2.92
1440 1585 0.390860 GCTGCGGACTGTAGGATGAT 59.609 55.000 0.00 0.00 0.00 2.45
1441 1586 1.202580 GCTGCGGACTGTAGGATGATT 60.203 52.381 0.00 0.00 0.00 2.57
1522 1667 3.503748 GGTTGTGATTCTTGTGAAGGGAG 59.496 47.826 0.00 0.00 35.44 4.30
1535 1680 2.161030 GAAGGGAGATACTCGCCGTAT 58.839 52.381 11.18 0.00 43.17 3.06
1585 1730 6.581171 AGGTTTCTGAATCTTGTGATTTCC 57.419 37.500 0.00 0.00 42.43 3.13
1641 1796 5.164100 GCAACGCCACACTTACATTTTATTG 60.164 40.000 0.00 0.00 0.00 1.90
1717 1872 2.695359 TGAGCCCGTGATTTCTACAAC 58.305 47.619 0.00 0.00 0.00 3.32
1832 1990 1.203523 GTGACACCAACACCTTTGCAA 59.796 47.619 0.00 0.00 32.84 4.08
1836 1994 0.534873 ACCAACACCTTTGCAACCAC 59.465 50.000 0.00 0.00 0.00 4.16
2047 2205 0.244721 TCTGAGTGACATGGTCAGCG 59.755 55.000 0.00 0.00 43.57 5.18
2249 2407 6.342111 CCTTACATCTCTTCTTACCAAGACC 58.658 44.000 0.00 0.00 37.23 3.85
2464 2714 9.689075 CGTGTGTAATCAGTTAGTCATATTTTG 57.311 33.333 0.00 0.00 0.00 2.44
2480 2731 2.990740 TTTGGGGTTACTCAGGCAAT 57.009 45.000 0.00 0.00 0.00 3.56
2754 3008 6.871492 TCAAGCATGTTAGTTCACGAAATAGA 59.129 34.615 0.00 0.00 0.00 1.98
2755 3009 7.386573 TCAAGCATGTTAGTTCACGAAATAGAA 59.613 33.333 0.00 0.00 0.00 2.10
2756 3010 7.295952 AGCATGTTAGTTCACGAAATAGAAG 57.704 36.000 0.00 0.00 0.00 2.85
2757 3011 6.313905 AGCATGTTAGTTCACGAAATAGAAGG 59.686 38.462 0.00 0.00 0.00 3.46
2758 3012 6.456988 GCATGTTAGTTCACGAAATAGAAGGG 60.457 42.308 0.00 0.00 0.00 3.95
2759 3013 5.484715 TGTTAGTTCACGAAATAGAAGGGG 58.515 41.667 0.00 0.00 0.00 4.79
2760 3014 5.246656 TGTTAGTTCACGAAATAGAAGGGGA 59.753 40.000 0.00 0.00 0.00 4.81
2761 3015 4.473477 AGTTCACGAAATAGAAGGGGAG 57.527 45.455 0.00 0.00 0.00 4.30
2762 3016 2.937149 GTTCACGAAATAGAAGGGGAGC 59.063 50.000 0.00 0.00 0.00 4.70
2763 3017 1.485066 TCACGAAATAGAAGGGGAGCC 59.515 52.381 0.00 0.00 0.00 4.70
2764 3018 1.486726 CACGAAATAGAAGGGGAGCCT 59.513 52.381 0.00 0.00 0.00 4.58
2765 3019 2.092914 CACGAAATAGAAGGGGAGCCTT 60.093 50.000 0.00 0.00 0.00 4.35
2766 3020 2.092914 ACGAAATAGAAGGGGAGCCTTG 60.093 50.000 0.00 0.00 0.00 3.61
2767 3021 2.746472 CGAAATAGAAGGGGAGCCTTGG 60.746 54.545 0.00 0.00 0.00 3.61
2768 3022 0.553333 AATAGAAGGGGAGCCTTGGC 59.447 55.000 2.97 2.97 0.00 4.52
2769 3023 1.700042 ATAGAAGGGGAGCCTTGGCG 61.700 60.000 5.95 0.00 0.00 5.69
2777 3031 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2778 3032 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2779 3033 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2780 3034 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2781 3035 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2782 3036 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2783 3037 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2788 3042 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2789 3043 1.303643 AGTGGTAAAGCTGCTGCCC 60.304 57.895 12.44 6.80 40.80 5.36
2790 3044 1.303643 GTGGTAAAGCTGCTGCCCT 60.304 57.895 12.44 2.07 40.80 5.19
2791 3045 1.303561 TGGTAAAGCTGCTGCCCTG 60.304 57.895 12.44 0.00 40.80 4.45
2792 3046 1.303643 GGTAAAGCTGCTGCCCTGT 60.304 57.895 12.44 0.00 40.80 4.00
2793 3047 1.589716 GGTAAAGCTGCTGCCCTGTG 61.590 60.000 12.44 0.00 40.80 3.66
2794 3048 0.606401 GTAAAGCTGCTGCCCTGTGA 60.606 55.000 12.44 0.00 40.80 3.58
2795 3049 0.606401 TAAAGCTGCTGCCCTGTGAC 60.606 55.000 12.44 0.00 40.80 3.67
2796 3050 3.857309 AAGCTGCTGCCCTGTGACC 62.857 63.158 12.44 0.00 40.80 4.02
2797 3051 4.648626 GCTGCTGCCCTGTGACCA 62.649 66.667 3.85 0.00 0.00 4.02
2798 3052 2.353958 CTGCTGCCCTGTGACCAT 59.646 61.111 0.00 0.00 0.00 3.55
2799 3053 2.034532 TGCTGCCCTGTGACCATG 59.965 61.111 0.00 0.00 0.00 3.66
2800 3054 2.352422 GCTGCCCTGTGACCATGA 59.648 61.111 0.00 0.00 0.00 3.07
2801 3055 1.748122 GCTGCCCTGTGACCATGAG 60.748 63.158 0.00 0.00 0.00 2.90
2802 3056 1.077930 CTGCCCTGTGACCATGAGG 60.078 63.158 0.00 0.00 42.21 3.86
2817 3071 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2818 3072 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2819 3073 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2820 3074 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2821 3075 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2822 3076 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2823 3077 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2824 3078 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2825 3079 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2826 3080 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2840 3094 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2841 3095 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2842 3096 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2843 3097 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2844 3098 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2845 3099 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2846 3100 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2847 3101 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2848 3102 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2849 3103 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2850 3104 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2851 3105 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2852 3106 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2853 3107 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2854 3108 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2855 3109 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2856 3110 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2857 3111 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2858 3112 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2859 3113 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2860 3114 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2861 3115 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2862 3116 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2863 3117 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2864 3118 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2865 3119 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2866 3120 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2867 3121 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2868 3122 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2869 3123 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2870 3124 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2871 3125 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2872 3126 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2873 3127 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2874 3128 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2875 3129 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2876 3130 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2877 3131 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2882 3136 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2883 3137 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2884 3138 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2885 3139 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2886 3140 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2887 3141 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2888 3142 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2889 3143 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2890 3144 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2891 3145 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2892 3146 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2893 3147 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2894 3148 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2895 3149 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2896 3150 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2897 3151 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2898 3152 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2899 3153 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2900 3154 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2901 3155 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2926 3180 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2927 3181 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2928 3182 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2929 3183 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2930 3184 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2931 3185 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2932 3186 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2933 3187 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2934 3188 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
2935 3189 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3330 3588 9.897744 CACTCTTAAAAGTTGCTTTGATGATAA 57.102 29.630 0.00 0.00 33.64 1.75
3338 3596 9.783081 AAAGTTGCTTTGATGATAATTTCCTTT 57.217 25.926 0.00 0.00 31.98 3.11
3397 3655 9.767684 TTTTAGTTCACGAAATAGCATGTTATG 57.232 29.630 2.52 0.00 0.00 1.90
3414 3672 8.945758 CATGTTATGCTAGTTCTGAAATATGC 57.054 34.615 0.00 5.47 0.00 3.14
3415 3673 8.781196 CATGTTATGCTAGTTCTGAAATATGCT 58.219 33.333 15.09 3.05 0.00 3.79
3416 3674 8.737168 TGTTATGCTAGTTCTGAAATATGCTT 57.263 30.769 15.09 12.56 0.00 3.91
3417 3675 9.177608 TGTTATGCTAGTTCTGAAATATGCTTT 57.822 29.630 15.09 8.94 0.00 3.51
3418 3676 9.443283 GTTATGCTAGTTCTGAAATATGCTTTG 57.557 33.333 15.09 0.42 0.00 2.77
3419 3677 7.870509 ATGCTAGTTCTGAAATATGCTTTGA 57.129 32.000 15.09 2.55 0.00 2.69
3420 3678 7.312657 TGCTAGTTCTGAAATATGCTTTGAG 57.687 36.000 15.09 0.47 0.00 3.02
3421 3679 6.317140 TGCTAGTTCTGAAATATGCTTTGAGG 59.683 38.462 15.09 0.00 0.00 3.86
3422 3680 6.238593 GCTAGTTCTGAAATATGCTTTGAGGG 60.239 42.308 0.00 0.00 0.00 4.30
3423 3681 5.819991 AGTTCTGAAATATGCTTTGAGGGA 58.180 37.500 0.00 0.00 0.00 4.20
3424 3682 6.248433 AGTTCTGAAATATGCTTTGAGGGAA 58.752 36.000 0.00 0.00 0.00 3.97
3425 3683 6.894103 AGTTCTGAAATATGCTTTGAGGGAAT 59.106 34.615 0.00 0.00 0.00 3.01
3426 3684 6.949352 TCTGAAATATGCTTTGAGGGAATC 57.051 37.500 0.00 0.00 0.00 2.52
3427 3685 6.425735 TCTGAAATATGCTTTGAGGGAATCA 58.574 36.000 0.00 0.00 35.62 2.57
3428 3686 6.891361 TCTGAAATATGCTTTGAGGGAATCAA 59.109 34.615 0.00 0.00 46.31 2.57
3436 3694 2.099141 TGAGGGAATCAAGACAAGCG 57.901 50.000 0.00 0.00 34.02 4.68
3437 3695 1.623311 TGAGGGAATCAAGACAAGCGA 59.377 47.619 0.00 0.00 34.02 4.93
3438 3696 2.038426 TGAGGGAATCAAGACAAGCGAA 59.962 45.455 0.00 0.00 34.02 4.70
3439 3697 3.074412 GAGGGAATCAAGACAAGCGAAA 58.926 45.455 0.00 0.00 0.00 3.46
3440 3698 3.077359 AGGGAATCAAGACAAGCGAAAG 58.923 45.455 0.00 0.00 0.00 2.62
3441 3699 2.814336 GGGAATCAAGACAAGCGAAAGT 59.186 45.455 0.00 0.00 0.00 2.66
3442 3700 3.365364 GGGAATCAAGACAAGCGAAAGTG 60.365 47.826 0.00 0.00 0.00 3.16
3443 3701 3.365364 GGAATCAAGACAAGCGAAAGTGG 60.365 47.826 0.00 0.00 0.00 4.00
3444 3702 0.944386 TCAAGACAAGCGAAAGTGGC 59.056 50.000 0.00 0.00 0.00 5.01
3445 3703 0.947244 CAAGACAAGCGAAAGTGGCT 59.053 50.000 0.00 0.00 44.02 4.75
3446 3704 2.143122 CAAGACAAGCGAAAGTGGCTA 58.857 47.619 0.00 0.00 40.53 3.93
3447 3705 1.797025 AGACAAGCGAAAGTGGCTAC 58.203 50.000 0.00 0.00 40.53 3.58
3448 3706 0.796927 GACAAGCGAAAGTGGCTACC 59.203 55.000 0.00 0.00 40.53 3.18
3449 3707 0.605589 ACAAGCGAAAGTGGCTACCC 60.606 55.000 0.00 0.00 40.53 3.69
3450 3708 0.605319 CAAGCGAAAGTGGCTACCCA 60.605 55.000 0.00 0.00 40.53 4.51
3451 3709 0.109723 AAGCGAAAGTGGCTACCCAA 59.890 50.000 0.00 0.00 44.33 4.12
3452 3710 0.605589 AGCGAAAGTGGCTACCCAAC 60.606 55.000 0.00 0.00 44.33 3.77
3453 3711 0.887387 GCGAAAGTGGCTACCCAACA 60.887 55.000 0.00 0.00 44.33 3.33
3454 3712 1.600023 CGAAAGTGGCTACCCAACAA 58.400 50.000 0.00 0.00 44.33 2.83
3455 3713 1.265905 CGAAAGTGGCTACCCAACAAC 59.734 52.381 0.00 0.00 44.33 3.32
3456 3714 1.611977 GAAAGTGGCTACCCAACAACC 59.388 52.381 0.00 0.00 44.33 3.77
3457 3715 0.850784 AAGTGGCTACCCAACAACCT 59.149 50.000 0.00 0.00 44.33 3.50
3458 3716 0.850784 AGTGGCTACCCAACAACCTT 59.149 50.000 0.00 0.00 44.33 3.50
3459 3717 1.202891 AGTGGCTACCCAACAACCTTC 60.203 52.381 0.00 0.00 44.33 3.46
3460 3718 0.847373 TGGCTACCCAACAACCTTCA 59.153 50.000 0.00 0.00 38.46 3.02
3461 3719 1.215673 TGGCTACCCAACAACCTTCAA 59.784 47.619 0.00 0.00 38.46 2.69
3462 3720 1.886542 GGCTACCCAACAACCTTCAAG 59.113 52.381 0.00 0.00 0.00 3.02
3463 3721 2.583143 GCTACCCAACAACCTTCAAGT 58.417 47.619 0.00 0.00 0.00 3.16
3464 3722 2.956333 GCTACCCAACAACCTTCAAGTT 59.044 45.455 0.00 0.00 0.00 2.66
3465 3723 4.139038 GCTACCCAACAACCTTCAAGTTA 58.861 43.478 0.00 0.00 0.00 2.24
3466 3724 4.581409 GCTACCCAACAACCTTCAAGTTAA 59.419 41.667 0.00 0.00 0.00 2.01
3467 3725 5.068067 GCTACCCAACAACCTTCAAGTTAAA 59.932 40.000 0.00 0.00 0.00 1.52
3468 3726 6.406065 GCTACCCAACAACCTTCAAGTTAAAA 60.406 38.462 0.00 0.00 0.00 1.52
3469 3727 5.726397 ACCCAACAACCTTCAAGTTAAAAC 58.274 37.500 0.00 0.00 0.00 2.43
3470 3728 5.482526 ACCCAACAACCTTCAAGTTAAAACT 59.517 36.000 0.00 0.00 42.04 2.66
3472 3730 6.533723 CCCAACAACCTTCAAGTTAAAACTTC 59.466 38.462 5.13 0.00 45.65 3.01
3473 3731 7.093992 CCAACAACCTTCAAGTTAAAACTTCA 58.906 34.615 5.13 0.00 45.65 3.02
3474 3732 7.275560 CCAACAACCTTCAAGTTAAAACTTCAG 59.724 37.037 5.13 5.08 45.65 3.02
3475 3733 7.462571 ACAACCTTCAAGTTAAAACTTCAGT 57.537 32.000 5.13 0.00 45.65 3.41
3476 3734 7.892609 ACAACCTTCAAGTTAAAACTTCAGTT 58.107 30.769 5.13 4.73 45.65 3.16
3477 3735 8.364894 ACAACCTTCAAGTTAAAACTTCAGTTT 58.635 29.630 5.13 0.00 45.65 2.66
3478 3736 8.860128 CAACCTTCAAGTTAAAACTTCAGTTTC 58.140 33.333 5.41 0.00 45.65 2.78
3479 3737 8.349568 ACCTTCAAGTTAAAACTTCAGTTTCT 57.650 30.769 5.41 0.00 45.65 2.52
3480 3738 8.244113 ACCTTCAAGTTAAAACTTCAGTTTCTG 58.756 33.333 5.41 0.45 45.65 3.02
3481 3739 8.244113 CCTTCAAGTTAAAACTTCAGTTTCTGT 58.756 33.333 5.41 0.00 45.65 3.41
3482 3740 9.626045 CTTCAAGTTAAAACTTCAGTTTCTGTT 57.374 29.630 5.41 0.00 45.65 3.16
3487 3745 9.886132 AGTTAAAACTTCAGTTTCTGTTAGAGA 57.114 29.630 5.41 0.00 46.47 3.10
3491 3749 9.620259 AAAACTTCAGTTTCTGTTAGAGATCTT 57.380 29.630 5.41 0.00 46.47 2.40
3492 3750 9.620259 AAACTTCAGTTTCTGTTAGAGATCTTT 57.380 29.630 0.00 0.00 44.15 2.52
3493 3751 9.620259 AACTTCAGTTTCTGTTAGAGATCTTTT 57.380 29.630 0.00 0.00 33.93 2.27
3494 3752 9.050601 ACTTCAGTTTCTGTTAGAGATCTTTTG 57.949 33.333 0.00 0.00 32.61 2.44
3495 3753 8.964476 TTCAGTTTCTGTTAGAGATCTTTTGT 57.036 30.769 0.00 0.00 32.61 2.83
3496 3754 8.370493 TCAGTTTCTGTTAGAGATCTTTTGTG 57.630 34.615 0.00 0.00 32.61 3.33
3497 3755 8.204160 TCAGTTTCTGTTAGAGATCTTTTGTGA 58.796 33.333 0.00 0.00 32.61 3.58
3498 3756 8.830580 CAGTTTCTGTTAGAGATCTTTTGTGAA 58.169 33.333 0.00 0.00 0.00 3.18
3499 3757 9.396022 AGTTTCTGTTAGAGATCTTTTGTGAAA 57.604 29.630 0.00 2.14 0.00 2.69
3528 3786 8.723942 ATTTAGGTCTACATTGTCAATCACTC 57.276 34.615 0.00 0.00 0.00 3.51
3529 3787 7.482169 TTAGGTCTACATTGTCAATCACTCT 57.518 36.000 0.00 0.00 0.00 3.24
3530 3788 6.365970 AGGTCTACATTGTCAATCACTCTT 57.634 37.500 0.00 0.00 0.00 2.85
3531 3789 7.482169 AGGTCTACATTGTCAATCACTCTTA 57.518 36.000 0.00 0.00 0.00 2.10
3532 3790 7.907389 AGGTCTACATTGTCAATCACTCTTAA 58.093 34.615 0.00 0.00 0.00 1.85
3533 3791 8.375506 AGGTCTACATTGTCAATCACTCTTAAA 58.624 33.333 0.00 0.00 0.00 1.52
3534 3792 8.999431 GGTCTACATTGTCAATCACTCTTAAAA 58.001 33.333 0.00 0.00 0.00 1.52
3536 3794 9.778741 TCTACATTGTCAATCACTCTTAAAAGT 57.221 29.630 0.00 0.00 0.00 2.66
3539 3797 7.649306 ACATTGTCAATCACTCTTAAAAGTTGC 59.351 33.333 0.00 0.00 0.00 4.17
3540 3798 6.942532 TGTCAATCACTCTTAAAAGTTGCT 57.057 33.333 0.00 0.00 0.00 3.91
3541 3799 7.333528 TGTCAATCACTCTTAAAAGTTGCTT 57.666 32.000 0.00 0.00 0.00 3.91
3542 3800 7.771183 TGTCAATCACTCTTAAAAGTTGCTTT 58.229 30.769 0.00 0.00 34.94 3.51
3543 3801 7.701924 TGTCAATCACTCTTAAAAGTTGCTTTG 59.298 33.333 0.00 0.00 33.64 2.77
3544 3802 7.915397 GTCAATCACTCTTAAAAGTTGCTTTGA 59.085 33.333 0.00 0.00 33.64 2.69
3545 3803 8.632679 TCAATCACTCTTAAAAGTTGCTTTGAT 58.367 29.630 0.00 0.00 33.64 2.57
3546 3804 8.697067 CAATCACTCTTAAAAGTTGCTTTGATG 58.303 33.333 0.00 0.00 33.64 3.07
3547 3805 7.566760 TCACTCTTAAAAGTTGCTTTGATGA 57.433 32.000 0.00 0.00 33.64 2.92
3548 3806 8.169977 TCACTCTTAAAAGTTGCTTTGATGAT 57.830 30.769 0.00 0.00 33.64 2.45
3583 3841 7.605410 ATTTCACGGTTAATTAACATCTCGT 57.395 32.000 25.59 21.78 37.92 4.18
3669 3927 7.476540 TGTTGGTACAGTAGATCTATGTGTT 57.523 36.000 20.04 9.26 42.39 3.32
3740 3998 7.126726 AGCACCAATACCTTTGTATTACTCCTA 59.873 37.037 0.00 0.00 44.06 2.94
4001 4259 5.896678 ACTAGTTCATCTGCTGATACCTTCT 59.103 40.000 5.70 4.13 32.72 2.85
4008 4266 1.839994 TGCTGATACCTTCTCCCCTTG 59.160 52.381 0.00 0.00 0.00 3.61
4012 4270 2.026262 TGATACCTTCTCCCCTTGTTGC 60.026 50.000 0.00 0.00 0.00 4.17
4418 4676 2.434336 CCTTGGAATCGTCTACATGGGA 59.566 50.000 0.00 0.00 0.00 4.37
4481 4739 3.432782 GCTTTTCATCTGAATGCTTCGG 58.567 45.455 9.64 0.00 37.39 4.30
4528 4786 2.802247 GTTTGTGAAGCAAGCCCATTTC 59.198 45.455 0.00 0.00 38.47 2.17
4586 4844 6.699575 AAAAATGTACATCCATGCTACTCC 57.300 37.500 9.23 0.00 0.00 3.85
4587 4845 4.357918 AATGTACATCCATGCTACTCCC 57.642 45.455 9.23 0.00 0.00 4.30
4588 4846 3.046283 TGTACATCCATGCTACTCCCT 57.954 47.619 0.00 0.00 0.00 4.20
4589 4847 3.384168 TGTACATCCATGCTACTCCCTT 58.616 45.455 0.00 0.00 0.00 3.95
4590 4848 3.388024 TGTACATCCATGCTACTCCCTTC 59.612 47.826 0.00 0.00 0.00 3.46
4591 4849 1.414181 ACATCCATGCTACTCCCTTCG 59.586 52.381 0.00 0.00 0.00 3.79
4592 4850 1.414181 CATCCATGCTACTCCCTTCGT 59.586 52.381 0.00 0.00 0.00 3.85
4593 4851 1.568504 TCCATGCTACTCCCTTCGTT 58.431 50.000 0.00 0.00 0.00 3.85
4594 4852 1.480954 TCCATGCTACTCCCTTCGTTC 59.519 52.381 0.00 0.00 0.00 3.95
4595 4853 1.207089 CCATGCTACTCCCTTCGTTCA 59.793 52.381 0.00 0.00 0.00 3.18
4596 4854 2.271800 CATGCTACTCCCTTCGTTCAC 58.728 52.381 0.00 0.00 0.00 3.18
4597 4855 1.629043 TGCTACTCCCTTCGTTCACT 58.371 50.000 0.00 0.00 0.00 3.41
4598 4856 1.968493 TGCTACTCCCTTCGTTCACTT 59.032 47.619 0.00 0.00 0.00 3.16
4599 4857 2.367567 TGCTACTCCCTTCGTTCACTTT 59.632 45.455 0.00 0.00 0.00 2.66
4600 4858 3.181458 TGCTACTCCCTTCGTTCACTTTT 60.181 43.478 0.00 0.00 0.00 2.27
4601 4859 3.813724 GCTACTCCCTTCGTTCACTTTTT 59.186 43.478 0.00 0.00 0.00 1.94
4622 4880 7.566760 TTTTTAAGTCATTTCAGACAGCTCA 57.433 32.000 0.00 0.00 40.98 4.26
4623 4881 7.566760 TTTTAAGTCATTTCAGACAGCTCAA 57.433 32.000 0.00 0.00 40.98 3.02
4624 4882 7.566760 TTTAAGTCATTTCAGACAGCTCAAA 57.433 32.000 0.00 0.00 40.98 2.69
4625 4883 7.566760 TTAAGTCATTTCAGACAGCTCAAAA 57.433 32.000 0.00 0.00 40.98 2.44
4626 4884 6.645790 AAGTCATTTCAGACAGCTCAAAAT 57.354 33.333 0.00 0.00 40.98 1.82
4627 4885 6.010294 AGTCATTTCAGACAGCTCAAAATG 57.990 37.500 0.00 0.00 40.98 2.32
4628 4886 5.048224 AGTCATTTCAGACAGCTCAAAATGG 60.048 40.000 12.29 0.00 40.98 3.16
4629 4887 4.219070 TCATTTCAGACAGCTCAAAATGGG 59.781 41.667 12.29 0.00 36.21 4.00
4630 4888 1.538047 TCAGACAGCTCAAAATGGGC 58.462 50.000 0.00 0.00 46.33 5.36
4638 4896 2.837498 GCTCAAAATGGGCTGTTTTGT 58.163 42.857 19.52 0.00 41.63 2.83
4639 4897 3.988819 GCTCAAAATGGGCTGTTTTGTA 58.011 40.909 19.52 10.81 41.63 2.41
4640 4898 3.740832 GCTCAAAATGGGCTGTTTTGTAC 59.259 43.478 19.52 12.95 41.63 2.90
4641 4899 4.739137 GCTCAAAATGGGCTGTTTTGTACA 60.739 41.667 19.52 0.00 41.63 2.90
4642 4900 5.540911 CTCAAAATGGGCTGTTTTGTACAT 58.459 37.500 19.52 0.00 43.52 2.29
4643 4901 5.923204 TCAAAATGGGCTGTTTTGTACATT 58.077 33.333 19.52 0.00 43.52 2.71
4644 4902 5.757320 TCAAAATGGGCTGTTTTGTACATTG 59.243 36.000 19.52 0.00 43.52 2.82
4645 4903 4.953940 AATGGGCTGTTTTGTACATTGT 57.046 36.364 0.00 0.00 35.85 2.71
4646 4904 4.519540 ATGGGCTGTTTTGTACATTGTC 57.480 40.909 0.00 0.00 35.85 3.18
4647 4905 3.561143 TGGGCTGTTTTGTACATTGTCT 58.439 40.909 0.00 0.00 35.85 3.41
4648 4906 3.317711 TGGGCTGTTTTGTACATTGTCTG 59.682 43.478 0.00 0.00 35.85 3.51
4649 4907 3.568007 GGGCTGTTTTGTACATTGTCTGA 59.432 43.478 0.00 0.00 35.85 3.27
4650 4908 4.037446 GGGCTGTTTTGTACATTGTCTGAA 59.963 41.667 0.00 0.00 35.85 3.02
4651 4909 5.451242 GGGCTGTTTTGTACATTGTCTGAAA 60.451 40.000 0.00 0.00 35.85 2.69
4652 4910 6.215845 GGCTGTTTTGTACATTGTCTGAAAT 58.784 36.000 0.00 0.00 35.85 2.17
4653 4911 6.144402 GGCTGTTTTGTACATTGTCTGAAATG 59.856 38.462 0.00 9.50 42.21 2.32
4655 4913 7.096477 GCTGTTTTGTACATTGTCTGAAATGTC 60.096 37.037 16.13 11.24 45.47 3.06
4656 4914 7.995289 TGTTTTGTACATTGTCTGAAATGTCT 58.005 30.769 16.13 3.09 45.47 3.41
4657 4915 8.465999 TGTTTTGTACATTGTCTGAAATGTCTT 58.534 29.630 16.13 2.61 45.47 3.01
4658 4916 8.958043 GTTTTGTACATTGTCTGAAATGTCTTC 58.042 33.333 16.13 11.26 45.47 2.87
4659 4917 7.800155 TTGTACATTGTCTGAAATGTCTTCA 57.200 32.000 16.13 12.76 45.47 3.02
4660 4918 7.800155 TGTACATTGTCTGAAATGTCTTCAA 57.200 32.000 16.13 0.18 45.47 2.69
4661 4919 7.864686 TGTACATTGTCTGAAATGTCTTCAAG 58.135 34.615 16.13 0.00 45.47 3.02
4662 4920 6.323203 ACATTGTCTGAAATGTCTTCAAGG 57.677 37.500 10.41 0.00 45.47 3.61
4663 4921 5.829924 ACATTGTCTGAAATGTCTTCAAGGT 59.170 36.000 10.41 0.00 45.47 3.50
4664 4922 6.016777 ACATTGTCTGAAATGTCTTCAAGGTC 60.017 38.462 10.41 0.00 45.47 3.85
4665 4923 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
4666 4924 6.419484 TGTCTGAAATGTCTTCAAGGTCTA 57.581 37.500 0.00 0.00 0.00 2.59
4667 4925 6.826668 TGTCTGAAATGTCTTCAAGGTCTAA 58.173 36.000 0.00 0.00 0.00 2.10
4668 4926 7.453393 TGTCTGAAATGTCTTCAAGGTCTAAT 58.547 34.615 0.00 0.00 0.00 1.73
4669 4927 8.593679 TGTCTGAAATGTCTTCAAGGTCTAATA 58.406 33.333 0.00 0.00 0.00 0.98
4670 4928 9.436957 GTCTGAAATGTCTTCAAGGTCTAATAA 57.563 33.333 0.00 0.00 0.00 1.40
4676 4934 9.793259 AATGTCTTCAAGGTCTAATAAAAGTGA 57.207 29.630 0.00 0.00 0.00 3.41
4677 4935 9.793259 ATGTCTTCAAGGTCTAATAAAAGTGAA 57.207 29.630 0.00 0.00 0.00 3.18
4678 4936 9.052759 TGTCTTCAAGGTCTAATAAAAGTGAAC 57.947 33.333 0.00 0.00 0.00 3.18
4679 4937 9.052759 GTCTTCAAGGTCTAATAAAAGTGAACA 57.947 33.333 0.00 0.00 0.00 3.18
4680 4938 9.273016 TCTTCAAGGTCTAATAAAAGTGAACAG 57.727 33.333 0.00 0.00 0.00 3.16
4681 4939 9.273016 CTTCAAGGTCTAATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 0.00 3.41
4682 4940 8.833231 TCAAGGTCTAATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 0.00 3.35
4683 4941 8.647796 TCAAGGTCTAATAAAAGTGAACAGAGA 58.352 33.333 0.00 0.00 0.00 3.10
4684 4942 8.930760 CAAGGTCTAATAAAAGTGAACAGAGAG 58.069 37.037 0.00 0.00 0.00 3.20
4685 4943 8.423906 AGGTCTAATAAAAGTGAACAGAGAGA 57.576 34.615 0.00 0.00 0.00 3.10
4686 4944 8.527810 AGGTCTAATAAAAGTGAACAGAGAGAG 58.472 37.037 0.00 0.00 0.00 3.20
4784 5047 6.321690 AGTCTACAATTCTATGTTCGGCTAGT 59.678 38.462 0.00 0.00 34.75 2.57
4796 5064 2.879462 GCTAGTGCCGACCGAACG 60.879 66.667 0.00 0.00 0.00 3.95
4842 5110 9.722056 CACAGCCTGATTATAGATTAAAAACAC 57.278 33.333 0.00 0.00 0.00 3.32
4901 5202 2.522185 ACTTGCATGAGCCAAATCTGT 58.478 42.857 6.60 0.00 41.13 3.41
5143 5476 5.163447 CCTTATCCAACCACTCGATGTTCTA 60.163 44.000 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
811 821 4.445162 GGCTCTCTGCTAGTAGAAGTAGGA 60.445 50.000 11.91 4.54 42.39 2.94
814 824 3.134262 TCGGCTCTCTGCTAGTAGAAGTA 59.866 47.826 11.91 0.25 42.39 2.24
818 828 2.566913 CTTCGGCTCTCTGCTAGTAGA 58.433 52.381 10.34 10.34 42.39 2.59
1131 1153 1.335964 CGACCGCGAACATAGGATGAT 60.336 52.381 8.23 0.00 40.82 2.45
1132 1154 0.030235 CGACCGCGAACATAGGATGA 59.970 55.000 8.23 0.00 40.82 2.92
1133 1155 0.939577 CCGACCGCGAACATAGGATG 60.940 60.000 8.23 0.00 40.82 3.51
1134 1156 1.362717 CCGACCGCGAACATAGGAT 59.637 57.895 8.23 0.00 40.82 3.24
1135 1157 1.597797 AACCGACCGCGAACATAGGA 61.598 55.000 8.23 0.00 40.82 2.94
1136 1158 0.738412 AAACCGACCGCGAACATAGG 60.738 55.000 8.23 4.48 40.82 2.57
1137 1159 0.368907 CAAACCGACCGCGAACATAG 59.631 55.000 8.23 0.00 40.82 2.23
1138 1160 1.015085 CCAAACCGACCGCGAACATA 61.015 55.000 8.23 0.00 40.82 2.29
1179 1201 4.638304 GACCAAGAAAAGCTACCAGTGTA 58.362 43.478 0.00 0.00 0.00 2.90
1180 1202 3.477530 GACCAAGAAAAGCTACCAGTGT 58.522 45.455 0.00 0.00 0.00 3.55
1181 1203 2.480419 CGACCAAGAAAAGCTACCAGTG 59.520 50.000 0.00 0.00 0.00 3.66
1199 1224 1.798079 CGAAATCCCTCGTTCCTCGAC 60.798 57.143 0.00 0.00 44.01 4.20
1221 1246 4.427096 TCAGCGACTGAGAAGTAAGAAG 57.573 45.455 5.59 0.00 35.39 2.85
1321 1463 5.910723 GCGAATAAACCGGTAATAATTGGTG 59.089 40.000 8.00 0.00 34.26 4.17
1465 1610 8.507249 AGTAATGAGATGTTTTCAAAGTACTGC 58.493 33.333 0.00 0.00 0.00 4.40
1522 1667 4.212847 TGTTCTAGTCATACGGCGAGTATC 59.787 45.833 16.62 0.59 43.78 2.24
1535 1680 9.739276 AATCCAGATAAAATTGTGTTCTAGTCA 57.261 29.630 0.00 0.00 0.00 3.41
1641 1796 8.757789 CATGAAAATAATGCACAACATGGATAC 58.242 33.333 0.00 0.00 38.67 2.24
1717 1872 0.451783 CATTTCCTCTTTTCCGCCGG 59.548 55.000 0.00 0.00 0.00 6.13
1832 1990 0.541863 GATCGGATGGTTCTGGTGGT 59.458 55.000 0.00 0.00 0.00 4.16
1836 1994 0.032678 CGGAGATCGGATGGTTCTGG 59.967 60.000 0.00 0.00 34.75 3.86
2047 2205 7.148423 TGTCACTAACTCATCATAAACACATGC 60.148 37.037 0.00 0.00 0.00 4.06
2249 2407 2.370281 ACCATGCGGCGATCTATAAG 57.630 50.000 12.98 0.00 34.57 1.73
2464 2714 1.474330 CCAATTGCCTGAGTAACCCC 58.526 55.000 0.00 0.00 0.00 4.95
2480 2731 3.198853 TGTCGACATCATTACCATCCCAA 59.801 43.478 15.76 0.00 0.00 4.12
2581 2835 4.944048 TGACCGACGATGATACATTTGAT 58.056 39.130 0.00 0.00 0.00 2.57
2599 2853 2.706339 ATTCCTGCAGTGAGATGACC 57.294 50.000 13.81 0.00 0.00 4.02
2759 3013 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2760 3014 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2761 3015 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2762 3016 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2763 3017 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2764 3018 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2765 3019 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2766 3020 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2770 3024 1.589716 GGGCAGCAGCTTTACCACTG 61.590 60.000 0.00 0.00 41.70 3.66
2771 3025 1.303643 GGGCAGCAGCTTTACCACT 60.304 57.895 0.00 0.00 41.70 4.00
2772 3026 1.303643 AGGGCAGCAGCTTTACCAC 60.304 57.895 0.00 0.00 41.70 4.16
2773 3027 1.303561 CAGGGCAGCAGCTTTACCA 60.304 57.895 0.00 0.00 41.70 3.25
2774 3028 1.303643 ACAGGGCAGCAGCTTTACC 60.304 57.895 0.00 0.00 41.70 2.85
2775 3029 0.606401 TCACAGGGCAGCAGCTTTAC 60.606 55.000 0.00 0.00 41.70 2.01
2776 3030 0.606401 GTCACAGGGCAGCAGCTTTA 60.606 55.000 0.00 0.00 41.70 1.85
2777 3031 1.900498 GTCACAGGGCAGCAGCTTT 60.900 57.895 0.00 0.00 41.70 3.51
2778 3032 2.282040 GTCACAGGGCAGCAGCTT 60.282 61.111 0.00 0.00 41.70 3.74
2779 3033 4.341783 GGTCACAGGGCAGCAGCT 62.342 66.667 0.00 0.00 41.70 4.24
2780 3034 3.933048 ATGGTCACAGGGCAGCAGC 62.933 63.158 0.00 0.00 41.10 5.25
2781 3035 2.044555 CATGGTCACAGGGCAGCAG 61.045 63.158 0.00 0.00 0.00 4.24
2782 3036 2.034532 CATGGTCACAGGGCAGCA 59.965 61.111 0.00 0.00 0.00 4.41
2783 3037 1.748122 CTCATGGTCACAGGGCAGC 60.748 63.158 0.00 0.00 0.00 5.25
2784 3038 1.077930 CCTCATGGTCACAGGGCAG 60.078 63.158 0.00 0.00 0.00 4.85
2785 3039 1.847506 ACCTCATGGTCACAGGGCA 60.848 57.895 2.73 0.00 44.78 5.36
2786 3040 3.081554 ACCTCATGGTCACAGGGC 58.918 61.111 2.73 0.00 44.78 5.19
2797 3051 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2798 3052 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2799 3053 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2800 3054 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2801 3055 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2802 3056 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2803 3057 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2804 3058 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2805 3059 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2806 3060 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2807 3061 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2808 3062 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2809 3063 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2810 3064 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2811 3065 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2812 3066 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2813 3067 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2814 3068 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2815 3069 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2816 3070 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2817 3071 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2818 3072 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2830 3084 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2831 3085 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2832 3086 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2833 3087 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2834 3088 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2835 3089 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2836 3090 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2837 3091 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2838 3092 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2839 3093 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2840 3094 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2841 3095 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2842 3096 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2843 3097 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2844 3098 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2845 3099 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2846 3100 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2847 3101 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2848 3102 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2849 3103 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2850 3104 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2851 3105 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2852 3106 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2853 3107 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2854 3108 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2855 3109 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2856 3110 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2866 3120 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2867 3121 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2868 3122 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2869 3123 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2870 3124 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2871 3125 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2872 3126 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2873 3127 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2874 3128 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2875 3129 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2876 3130 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2877 3131 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2878 3132 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2879 3133 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2880 3134 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2881 3135 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2882 3136 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2883 3137 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2884 3138 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2896 3150 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2899 3153 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2900 3154 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2901 3155 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2902 3156 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2908 3162 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2909 3163 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2910 3164 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2911 3165 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2912 3166 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3371 3629 9.767684 CATAACATGCTATTTCGTGAACTAAAA 57.232 29.630 0.00 0.00 0.00 1.52
3389 3647 8.781196 AGCATATTTCAGAACTAGCATAACATG 58.219 33.333 0.00 0.00 0.00 3.21
3390 3648 8.915057 AGCATATTTCAGAACTAGCATAACAT 57.085 30.769 0.00 0.00 0.00 2.71
3391 3649 8.737168 AAGCATATTTCAGAACTAGCATAACA 57.263 30.769 0.00 0.00 0.00 2.41
3392 3650 9.443283 CAAAGCATATTTCAGAACTAGCATAAC 57.557 33.333 0.00 0.00 0.00 1.89
3393 3651 9.394767 TCAAAGCATATTTCAGAACTAGCATAA 57.605 29.630 0.00 0.00 0.00 1.90
3394 3652 8.962884 TCAAAGCATATTTCAGAACTAGCATA 57.037 30.769 0.00 0.00 0.00 3.14
3395 3653 7.013083 CCTCAAAGCATATTTCAGAACTAGCAT 59.987 37.037 0.00 0.00 0.00 3.79
3396 3654 6.317140 CCTCAAAGCATATTTCAGAACTAGCA 59.683 38.462 0.00 0.00 0.00 3.49
3397 3655 6.238593 CCCTCAAAGCATATTTCAGAACTAGC 60.239 42.308 0.00 0.00 0.00 3.42
3398 3656 7.050377 TCCCTCAAAGCATATTTCAGAACTAG 58.950 38.462 0.00 0.00 0.00 2.57
3399 3657 6.957631 TCCCTCAAAGCATATTTCAGAACTA 58.042 36.000 0.00 0.00 0.00 2.24
3400 3658 5.819991 TCCCTCAAAGCATATTTCAGAACT 58.180 37.500 0.00 0.00 0.00 3.01
3401 3659 6.515272 TTCCCTCAAAGCATATTTCAGAAC 57.485 37.500 0.00 0.00 0.00 3.01
3402 3660 6.891361 TGATTCCCTCAAAGCATATTTCAGAA 59.109 34.615 0.00 0.00 0.00 3.02
3403 3661 6.425735 TGATTCCCTCAAAGCATATTTCAGA 58.574 36.000 0.00 0.00 0.00 3.27
3404 3662 6.704289 TGATTCCCTCAAAGCATATTTCAG 57.296 37.500 0.00 0.00 0.00 3.02
3405 3663 6.891361 TCTTGATTCCCTCAAAGCATATTTCA 59.109 34.615 0.00 0.00 43.20 2.69
3406 3664 7.148018 TGTCTTGATTCCCTCAAAGCATATTTC 60.148 37.037 0.00 0.00 43.20 2.17
3407 3665 6.664816 TGTCTTGATTCCCTCAAAGCATATTT 59.335 34.615 0.00 0.00 43.20 1.40
3408 3666 6.189859 TGTCTTGATTCCCTCAAAGCATATT 58.810 36.000 0.00 0.00 43.20 1.28
3409 3667 5.759059 TGTCTTGATTCCCTCAAAGCATAT 58.241 37.500 0.00 0.00 43.20 1.78
3410 3668 5.178096 TGTCTTGATTCCCTCAAAGCATA 57.822 39.130 0.00 0.00 43.20 3.14
3411 3669 4.038271 TGTCTTGATTCCCTCAAAGCAT 57.962 40.909 0.00 0.00 43.20 3.79
3412 3670 3.507162 TGTCTTGATTCCCTCAAAGCA 57.493 42.857 0.00 0.00 43.20 3.91
3413 3671 3.366781 GCTTGTCTTGATTCCCTCAAAGC 60.367 47.826 0.00 0.00 43.20 3.51
3414 3672 3.120060 CGCTTGTCTTGATTCCCTCAAAG 60.120 47.826 0.00 0.00 43.20 2.77
3415 3673 2.813754 CGCTTGTCTTGATTCCCTCAAA 59.186 45.455 0.00 0.00 43.20 2.69
3416 3674 2.038426 TCGCTTGTCTTGATTCCCTCAA 59.962 45.455 0.00 0.00 41.61 3.02
3417 3675 1.623311 TCGCTTGTCTTGATTCCCTCA 59.377 47.619 0.00 0.00 0.00 3.86
3418 3676 2.386661 TCGCTTGTCTTGATTCCCTC 57.613 50.000 0.00 0.00 0.00 4.30
3419 3677 2.859165 TTCGCTTGTCTTGATTCCCT 57.141 45.000 0.00 0.00 0.00 4.20
3420 3678 2.814336 ACTTTCGCTTGTCTTGATTCCC 59.186 45.455 0.00 0.00 0.00 3.97
3421 3679 3.365364 CCACTTTCGCTTGTCTTGATTCC 60.365 47.826 0.00 0.00 0.00 3.01
3422 3680 3.814945 CCACTTTCGCTTGTCTTGATTC 58.185 45.455 0.00 0.00 0.00 2.52
3423 3681 2.030805 GCCACTTTCGCTTGTCTTGATT 60.031 45.455 0.00 0.00 0.00 2.57
3424 3682 1.537202 GCCACTTTCGCTTGTCTTGAT 59.463 47.619 0.00 0.00 0.00 2.57
3425 3683 0.944386 GCCACTTTCGCTTGTCTTGA 59.056 50.000 0.00 0.00 0.00 3.02
3426 3684 0.947244 AGCCACTTTCGCTTGTCTTG 59.053 50.000 0.00 0.00 30.57 3.02
3427 3685 2.143925 GTAGCCACTTTCGCTTGTCTT 58.856 47.619 0.00 0.00 37.79 3.01
3428 3686 1.608283 GGTAGCCACTTTCGCTTGTCT 60.608 52.381 0.00 0.00 37.79 3.41
3429 3687 0.796927 GGTAGCCACTTTCGCTTGTC 59.203 55.000 0.00 0.00 37.79 3.18
3430 3688 0.605589 GGGTAGCCACTTTCGCTTGT 60.606 55.000 5.96 0.00 37.79 3.16
3431 3689 0.605319 TGGGTAGCCACTTTCGCTTG 60.605 55.000 10.27 0.00 37.79 4.01
3432 3690 0.109723 TTGGGTAGCCACTTTCGCTT 59.890 50.000 14.60 0.00 37.79 4.68
3433 3691 0.605589 GTTGGGTAGCCACTTTCGCT 60.606 55.000 14.60 0.00 40.45 4.93
3434 3692 0.887387 TGTTGGGTAGCCACTTTCGC 60.887 55.000 14.60 0.86 0.00 4.70
3435 3693 1.265905 GTTGTTGGGTAGCCACTTTCG 59.734 52.381 14.60 0.00 0.00 3.46
3436 3694 1.611977 GGTTGTTGGGTAGCCACTTTC 59.388 52.381 14.60 5.49 0.00 2.62
3437 3695 1.216930 AGGTTGTTGGGTAGCCACTTT 59.783 47.619 14.60 0.00 0.00 2.66
3438 3696 0.850784 AGGTTGTTGGGTAGCCACTT 59.149 50.000 14.60 0.00 0.00 3.16
3439 3697 0.850784 AAGGTTGTTGGGTAGCCACT 59.149 50.000 14.60 3.97 0.00 4.00
3440 3698 1.244816 GAAGGTTGTTGGGTAGCCAC 58.755 55.000 14.60 9.71 0.00 5.01
3441 3699 0.847373 TGAAGGTTGTTGGGTAGCCA 59.153 50.000 10.27 10.27 0.00 4.75
3442 3700 1.886542 CTTGAAGGTTGTTGGGTAGCC 59.113 52.381 3.29 3.29 0.00 3.93
3443 3701 2.583143 ACTTGAAGGTTGTTGGGTAGC 58.417 47.619 0.00 0.00 0.00 3.58
3444 3702 6.702716 TTTAACTTGAAGGTTGTTGGGTAG 57.297 37.500 0.00 0.00 0.00 3.18
3445 3703 6.664384 AGTTTTAACTTGAAGGTTGTTGGGTA 59.336 34.615 0.00 0.00 35.21 3.69
3446 3704 5.482526 AGTTTTAACTTGAAGGTTGTTGGGT 59.517 36.000 0.00 0.00 35.21 4.51
3447 3705 5.972935 AGTTTTAACTTGAAGGTTGTTGGG 58.027 37.500 0.00 0.00 35.21 4.12
3467 3725 9.620259 AAAAGATCTCTAACAGAAACTGAAGTT 57.380 29.630 0.00 0.00 40.50 2.66
3468 3726 9.050601 CAAAAGATCTCTAACAGAAACTGAAGT 57.949 33.333 0.00 0.00 33.62 3.01
3469 3727 9.050601 ACAAAAGATCTCTAACAGAAACTGAAG 57.949 33.333 0.00 3.35 33.62 3.02
3470 3728 8.830580 CACAAAAGATCTCTAACAGAAACTGAA 58.169 33.333 0.00 0.00 33.62 3.02
3471 3729 8.204160 TCACAAAAGATCTCTAACAGAAACTGA 58.796 33.333 0.00 0.00 33.62 3.41
3472 3730 8.370493 TCACAAAAGATCTCTAACAGAAACTG 57.630 34.615 0.00 0.00 33.62 3.16
3473 3731 8.964476 TTCACAAAAGATCTCTAACAGAAACT 57.036 30.769 0.00 0.00 33.62 2.66
3502 3760 9.817809 GAGTGATTGACAATGTAGACCTAAATA 57.182 33.333 5.14 0.00 0.00 1.40
3503 3761 8.543774 AGAGTGATTGACAATGTAGACCTAAAT 58.456 33.333 5.14 0.00 0.00 1.40
3504 3762 7.907389 AGAGTGATTGACAATGTAGACCTAAA 58.093 34.615 5.14 0.00 0.00 1.85
3505 3763 7.482169 AGAGTGATTGACAATGTAGACCTAA 57.518 36.000 5.14 0.00 0.00 2.69
3506 3764 7.482169 AAGAGTGATTGACAATGTAGACCTA 57.518 36.000 5.14 0.00 0.00 3.08
3507 3765 6.365970 AAGAGTGATTGACAATGTAGACCT 57.634 37.500 5.14 0.00 0.00 3.85
3508 3766 8.547967 TTTAAGAGTGATTGACAATGTAGACC 57.452 34.615 5.14 0.00 0.00 3.85
3510 3768 9.778741 ACTTTTAAGAGTGATTGACAATGTAGA 57.221 29.630 5.14 0.00 0.00 2.59
3513 3771 7.649306 GCAACTTTTAAGAGTGATTGACAATGT 59.351 33.333 5.14 0.00 0.00 2.71
3514 3772 7.864379 AGCAACTTTTAAGAGTGATTGACAATG 59.136 33.333 5.14 0.00 0.00 2.82
3515 3773 7.945134 AGCAACTTTTAAGAGTGATTGACAAT 58.055 30.769 0.00 0.00 0.00 2.71
3516 3774 7.333528 AGCAACTTTTAAGAGTGATTGACAA 57.666 32.000 0.00 0.00 0.00 3.18
3517 3775 6.942532 AGCAACTTTTAAGAGTGATTGACA 57.057 33.333 0.00 0.00 0.00 3.58
3518 3776 7.915397 TCAAAGCAACTTTTAAGAGTGATTGAC 59.085 33.333 0.00 0.00 30.60 3.18
3519 3777 7.995289 TCAAAGCAACTTTTAAGAGTGATTGA 58.005 30.769 0.00 5.93 30.60 2.57
3520 3778 8.697067 CATCAAAGCAACTTTTAAGAGTGATTG 58.303 33.333 0.00 3.95 30.60 2.67
3521 3779 8.632679 TCATCAAAGCAACTTTTAAGAGTGATT 58.367 29.630 0.00 0.00 30.60 2.57
3522 3780 8.169977 TCATCAAAGCAACTTTTAAGAGTGAT 57.830 30.769 0.00 0.00 30.60 3.06
3523 3781 7.566760 TCATCAAAGCAACTTTTAAGAGTGA 57.433 32.000 0.00 0.00 30.60 3.41
3524 3782 9.897744 TTATCATCAAAGCAACTTTTAAGAGTG 57.102 29.630 0.00 0.00 30.60 3.51
3531 3789 9.783081 AAGGAAATTATCATCAAAGCAACTTTT 57.217 25.926 0.00 0.00 30.60 2.27
3532 3790 9.783081 AAAGGAAATTATCATCAAAGCAACTTT 57.217 25.926 0.00 0.00 33.58 2.66
3542 3800 9.184523 ACCGTGAAATAAAGGAAATTATCATCA 57.815 29.630 0.00 0.00 0.00 3.07
3583 3841 9.701098 CTTTACCTGCAATATTATTACCGTAGA 57.299 33.333 0.00 0.00 0.00 2.59
3669 3927 1.507742 TCCCCATGTAGAGGATGCCTA 59.492 52.381 0.00 0.00 31.76 3.93
3740 3998 9.003658 CCAAATGTAACTTCTAAAGACACAGAT 57.996 33.333 0.00 0.00 32.38 2.90
3752 4010 8.519526 TGCGAATAATTTCCAAATGTAACTTCT 58.480 29.630 0.00 0.00 0.00 2.85
3978 4236 6.403866 AGAAGGTATCAGCAGATGAACTAG 57.596 41.667 1.18 0.00 42.53 2.57
4001 4259 2.203480 GCACCTGCAACAAGGGGA 60.203 61.111 0.00 0.00 44.25 4.81
4008 4266 4.641777 GCTTTCAGCACCTGCAAC 57.358 55.556 0.00 0.00 45.16 4.17
4418 4676 0.959553 CTGGACACTGGTACTGTCGT 59.040 55.000 7.43 2.58 38.84 4.34
4429 4687 2.936919 TCAACAGCATTCTGGACACT 57.063 45.000 0.00 0.00 44.54 3.55
4492 4750 9.713713 TGCTTCACAAACTGTACAGTAATAATA 57.286 29.630 28.13 12.13 41.58 0.98
4493 4751 8.615878 TGCTTCACAAACTGTACAGTAATAAT 57.384 30.769 28.13 10.13 41.58 1.28
4494 4752 8.439993 TTGCTTCACAAACTGTACAGTAATAA 57.560 30.769 28.13 16.18 41.58 1.40
4495 4753 7.307751 GCTTGCTTCACAAACTGTACAGTAATA 60.308 37.037 28.13 10.15 41.58 0.98
4528 4786 2.426024 CAAGAATGAACCCAGAGCCATG 59.574 50.000 0.00 0.00 0.00 3.66
4598 4856 7.566760 TGAGCTGTCTGAAATGACTTAAAAA 57.433 32.000 0.00 0.00 37.79 1.94
4599 4857 7.566760 TTGAGCTGTCTGAAATGACTTAAAA 57.433 32.000 0.00 0.00 37.79 1.52
4600 4858 7.566760 TTTGAGCTGTCTGAAATGACTTAAA 57.433 32.000 0.00 0.00 37.79 1.52
4601 4859 7.566760 TTTTGAGCTGTCTGAAATGACTTAA 57.433 32.000 0.00 0.00 37.79 1.85
4602 4860 7.308770 CCATTTTGAGCTGTCTGAAATGACTTA 60.309 37.037 13.84 0.00 38.18 2.24
4603 4861 6.444633 CATTTTGAGCTGTCTGAAATGACTT 58.555 36.000 0.00 0.00 38.18 3.01
4604 4862 5.048224 CCATTTTGAGCTGTCTGAAATGACT 60.048 40.000 13.84 0.00 38.18 3.41
4605 4863 5.159209 CCATTTTGAGCTGTCTGAAATGAC 58.841 41.667 13.84 0.00 38.18 3.06
4606 4864 4.219070 CCCATTTTGAGCTGTCTGAAATGA 59.781 41.667 13.84 0.00 38.18 2.57
4607 4865 4.491676 CCCATTTTGAGCTGTCTGAAATG 58.508 43.478 0.00 0.57 37.04 2.32
4608 4866 3.056322 GCCCATTTTGAGCTGTCTGAAAT 60.056 43.478 0.00 0.00 0.00 2.17
4609 4867 2.297033 GCCCATTTTGAGCTGTCTGAAA 59.703 45.455 0.00 0.00 0.00 2.69
4610 4868 1.888512 GCCCATTTTGAGCTGTCTGAA 59.111 47.619 0.00 0.00 0.00 3.02
4611 4869 1.074405 AGCCCATTTTGAGCTGTCTGA 59.926 47.619 0.00 0.00 34.99 3.27
4612 4870 1.542492 AGCCCATTTTGAGCTGTCTG 58.458 50.000 0.00 0.00 34.99 3.51
4617 4875 2.435437 ACAAAACAGCCCATTTTGAGCT 59.565 40.909 19.09 0.00 45.75 4.09
4618 4876 2.837498 ACAAAACAGCCCATTTTGAGC 58.163 42.857 19.09 0.00 45.75 4.26
4619 4877 4.942852 TGTACAAAACAGCCCATTTTGAG 58.057 39.130 19.09 1.00 45.75 3.02
4620 4878 5.543507 ATGTACAAAACAGCCCATTTTGA 57.456 34.783 19.09 3.50 45.75 2.69
4622 4880 5.679601 ACAATGTACAAAACAGCCCATTTT 58.320 33.333 0.00 0.00 42.70 1.82
4623 4881 5.070313 AGACAATGTACAAAACAGCCCATTT 59.930 36.000 0.00 0.00 42.70 2.32
4624 4882 4.588528 AGACAATGTACAAAACAGCCCATT 59.411 37.500 0.00 0.00 42.70 3.16
4625 4883 4.022068 CAGACAATGTACAAAACAGCCCAT 60.022 41.667 0.00 0.00 42.70 4.00
4626 4884 3.317711 CAGACAATGTACAAAACAGCCCA 59.682 43.478 0.00 0.00 42.70 5.36
4627 4885 3.568007 TCAGACAATGTACAAAACAGCCC 59.432 43.478 0.00 0.00 42.70 5.19
4628 4886 4.829064 TCAGACAATGTACAAAACAGCC 57.171 40.909 0.00 0.00 42.70 4.85
4629 4887 6.697019 ACATTTCAGACAATGTACAAAACAGC 59.303 34.615 0.00 0.00 44.08 4.40
4630 4888 8.131100 AGACATTTCAGACAATGTACAAAACAG 58.869 33.333 0.00 0.00 45.55 3.16
4631 4889 7.995289 AGACATTTCAGACAATGTACAAAACA 58.005 30.769 0.00 0.00 45.55 2.83
4632 4890 8.856490 AAGACATTTCAGACAATGTACAAAAC 57.144 30.769 0.00 0.00 45.55 2.43
4633 4891 8.681806 TGAAGACATTTCAGACAATGTACAAAA 58.318 29.630 0.00 0.00 45.55 2.44
4634 4892 8.219546 TGAAGACATTTCAGACAATGTACAAA 57.780 30.769 0.00 0.00 45.55 2.83
4635 4893 7.800155 TGAAGACATTTCAGACAATGTACAA 57.200 32.000 0.00 0.00 45.55 2.41
4636 4894 7.041167 CCTTGAAGACATTTCAGACAATGTACA 60.041 37.037 0.00 0.00 45.55 2.90
4637 4895 7.041098 ACCTTGAAGACATTTCAGACAATGTAC 60.041 37.037 9.58 0.00 45.55 2.90
4638 4896 6.998074 ACCTTGAAGACATTTCAGACAATGTA 59.002 34.615 9.58 0.00 45.55 2.29
4640 4898 6.206243 AGACCTTGAAGACATTTCAGACAATG 59.794 38.462 0.00 0.00 39.67 2.82
4641 4899 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
4642 4900 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
4643 4901 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
4644 4902 7.913674 ATTAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
4650 4908 9.793259 TCACTTTTATTAGACCTTGAAGACATT 57.207 29.630 0.00 0.00 0.00 2.71
4651 4909 9.793259 TTCACTTTTATTAGACCTTGAAGACAT 57.207 29.630 0.00 0.00 0.00 3.06
4652 4910 9.052759 GTTCACTTTTATTAGACCTTGAAGACA 57.947 33.333 0.00 0.00 0.00 3.41
4653 4911 9.052759 TGTTCACTTTTATTAGACCTTGAAGAC 57.947 33.333 0.00 0.00 0.00 3.01
4654 4912 9.273016 CTGTTCACTTTTATTAGACCTTGAAGA 57.727 33.333 0.00 0.00 0.00 2.87
4655 4913 9.273016 TCTGTTCACTTTTATTAGACCTTGAAG 57.727 33.333 0.00 0.00 0.00 3.02
4656 4914 9.273016 CTCTGTTCACTTTTATTAGACCTTGAA 57.727 33.333 0.00 0.00 0.00 2.69
4657 4915 8.647796 TCTCTGTTCACTTTTATTAGACCTTGA 58.352 33.333 0.00 0.00 0.00 3.02
4658 4916 8.833231 TCTCTGTTCACTTTTATTAGACCTTG 57.167 34.615 0.00 0.00 0.00 3.61
4659 4917 8.871125 TCTCTCTGTTCACTTTTATTAGACCTT 58.129 33.333 0.00 0.00 0.00 3.50
4660 4918 8.423906 TCTCTCTGTTCACTTTTATTAGACCT 57.576 34.615 0.00 0.00 0.00 3.85
4661 4919 8.308207 ACTCTCTCTGTTCACTTTTATTAGACC 58.692 37.037 0.00 0.00 0.00 3.85
4666 4924 9.832445 TTGTTACTCTCTCTGTTCACTTTTATT 57.168 29.630 0.00 0.00 0.00 1.40
4667 4925 9.832445 TTTGTTACTCTCTCTGTTCACTTTTAT 57.168 29.630 0.00 0.00 0.00 1.40
4668 4926 9.095065 GTTTGTTACTCTCTCTGTTCACTTTTA 57.905 33.333 0.00 0.00 0.00 1.52
4669 4927 7.606456 TGTTTGTTACTCTCTCTGTTCACTTTT 59.394 33.333 0.00 0.00 0.00 2.27
4670 4928 7.103641 TGTTTGTTACTCTCTCTGTTCACTTT 58.896 34.615 0.00 0.00 0.00 2.66
4671 4929 6.640518 TGTTTGTTACTCTCTCTGTTCACTT 58.359 36.000 0.00 0.00 0.00 3.16
4672 4930 6.222038 TGTTTGTTACTCTCTCTGTTCACT 57.778 37.500 0.00 0.00 0.00 3.41
4673 4931 6.926272 AGATGTTTGTTACTCTCTCTGTTCAC 59.074 38.462 0.00 0.00 0.00 3.18
4674 4932 6.925718 CAGATGTTTGTTACTCTCTCTGTTCA 59.074 38.462 0.00 0.00 0.00 3.18
4675 4933 6.926272 ACAGATGTTTGTTACTCTCTCTGTTC 59.074 38.462 0.00 0.00 39.08 3.18
4676 4934 6.821388 ACAGATGTTTGTTACTCTCTCTGTT 58.179 36.000 0.00 0.00 39.08 3.16
4677 4935 6.412362 ACAGATGTTTGTTACTCTCTCTGT 57.588 37.500 0.00 0.00 37.77 3.41
4678 4936 8.994429 ATTACAGATGTTTGTTACTCTCTCTG 57.006 34.615 0.00 0.00 35.99 3.35
4877 5155 5.186409 ACAGATTTGGCTCATGCAAGTTATT 59.814 36.000 0.00 0.00 41.91 1.40
4878 5156 4.708421 ACAGATTTGGCTCATGCAAGTTAT 59.292 37.500 0.00 0.00 41.91 1.89
4879 5157 4.081406 ACAGATTTGGCTCATGCAAGTTA 58.919 39.130 0.00 0.00 41.91 2.24
4880 5158 2.895404 ACAGATTTGGCTCATGCAAGTT 59.105 40.909 0.00 0.00 41.91 2.66
4881 5159 2.522185 ACAGATTTGGCTCATGCAAGT 58.478 42.857 0.00 0.00 41.91 3.16
4882 5160 4.707030 TTACAGATTTGGCTCATGCAAG 57.293 40.909 0.00 0.00 41.91 4.01
4883 5161 6.681120 GCTTATTACAGATTTGGCTCATGCAA 60.681 38.462 0.00 0.00 41.91 4.08
4884 5162 5.221106 GCTTATTACAGATTTGGCTCATGCA 60.221 40.000 0.00 0.00 41.91 3.96
4885 5163 5.009410 AGCTTATTACAGATTTGGCTCATGC 59.991 40.000 0.00 0.00 38.76 4.06
4886 5164 6.630444 AGCTTATTACAGATTTGGCTCATG 57.370 37.500 0.00 0.00 0.00 3.07
4888 5166 7.067008 GGTTTAGCTTATTACAGATTTGGCTCA 59.933 37.037 0.00 0.00 0.00 4.26
4889 5167 7.418408 GGTTTAGCTTATTACAGATTTGGCTC 58.582 38.462 0.00 0.00 0.00 4.70
4890 5168 6.321435 GGGTTTAGCTTATTACAGATTTGGCT 59.679 38.462 0.00 0.00 0.00 4.75
4891 5169 6.321435 AGGGTTTAGCTTATTACAGATTTGGC 59.679 38.462 0.00 0.00 0.00 4.52
4892 5170 7.556275 TGAGGGTTTAGCTTATTACAGATTTGG 59.444 37.037 0.00 0.00 0.00 3.28
4893 5171 8.398665 GTGAGGGTTTAGCTTATTACAGATTTG 58.601 37.037 0.00 0.00 0.00 2.32
4897 5175 6.614694 TGTGAGGGTTTAGCTTATTACAGA 57.385 37.500 0.00 0.00 0.00 3.41
4901 5202 6.775708 ACAGTTGTGAGGGTTTAGCTTATTA 58.224 36.000 0.00 0.00 0.00 0.98
5023 5356 4.354662 ACCCCAACTTGTACTTTTTCCAA 58.645 39.130 0.00 0.00 0.00 3.53
5143 5476 5.710099 TCAAGGTTTCAGAAGTGAACTTGTT 59.290 36.000 9.86 0.00 42.60 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.