Multiple sequence alignment - TraesCS4A01G009500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G009500 chr4A 100.000 2803 0 0 1 2803 5705716 5708518 0.000000e+00 5177
1 TraesCS4A01G009500 chr4B 93.795 1660 73 11 573 2215 580791888 580790242 0.000000e+00 2468
2 TraesCS4A01G009500 chr4B 86.757 370 35 8 12 370 580792247 580791881 1.560000e-107 399
3 TraesCS4A01G009500 chr4B 89.024 246 19 3 2559 2803 580788821 580788583 5.870000e-77 298
4 TraesCS4A01G009500 chr4B 91.011 89 7 1 2476 2564 580790329 580790242 4.900000e-23 119
5 TraesCS4A01G009500 chr4D 93.589 1669 58 21 573 2216 464395120 464393476 0.000000e+00 2444
6 TraesCS4A01G009500 chr4D 90.060 332 24 4 2473 2803 464393568 464393245 3.340000e-114 422
7 TraesCS4A01G009500 chr4D 87.335 379 35 7 1 370 464395487 464395113 3.340000e-114 422
8 TraesCS4A01G009500 chr2A 80.513 195 25 8 371 565 585811830 585812011 1.350000e-28 137
9 TraesCS4A01G009500 chr7A 79.512 205 23 14 371 573 477818055 477817868 8.150000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G009500 chr4A 5705716 5708518 2802 False 5177 5177 100.00000 1 2803 1 chr4A.!!$F1 2802
1 TraesCS4A01G009500 chr4B 580788583 580792247 3664 True 821 2468 90.14675 12 2803 4 chr4B.!!$R1 2791
2 TraesCS4A01G009500 chr4D 464393245 464395487 2242 True 1096 2444 90.32800 1 2803 3 chr4D.!!$R1 2802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 103 0.173481 ATCATCCACGTCACGACCAG 59.827 55.0 2.91 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2077 0.616371 TAGGGCATAGGCAAACACGT 59.384 50.0 0.15 0.0 43.71 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.478072 TTGTGAAGCCACCATCCAGT 59.522 50.000 0.00 0.00 42.53 4.00
79 85 0.178891 ATCCCCTAGGCATCACCGAT 60.179 55.000 2.05 0.00 46.52 4.18
97 103 0.173481 ATCATCCACGTCACGACCAG 59.827 55.000 2.91 0.00 0.00 4.00
125 131 0.175989 GGTAGGAGGAGTGAAAGGCG 59.824 60.000 0.00 0.00 0.00 5.52
162 168 5.302059 TCTCTGTGTACTCTTTACTTGTGCT 59.698 40.000 0.00 0.00 0.00 4.40
170 176 2.637872 TCTTTACTTGTGCTACCTGCCT 59.362 45.455 0.00 0.00 42.00 4.75
171 177 3.835978 TCTTTACTTGTGCTACCTGCCTA 59.164 43.478 0.00 0.00 42.00 3.93
175 181 2.103373 CTTGTGCTACCTGCCTAGAGA 58.897 52.381 0.00 0.00 42.00 3.10
180 186 3.067040 GTGCTACCTGCCTAGAGAGTAAC 59.933 52.174 0.00 0.00 42.00 2.50
184 190 5.771165 GCTACCTGCCTAGAGAGTAACTTAT 59.229 44.000 0.00 0.00 35.15 1.73
199 205 9.046296 AGAGTAACTTATATGGAATTTTGCTCG 57.954 33.333 0.00 0.00 0.00 5.03
200 206 7.639945 AGTAACTTATATGGAATTTTGCTCGC 58.360 34.615 0.00 0.00 0.00 5.03
201 207 5.438761 ACTTATATGGAATTTTGCTCGCC 57.561 39.130 0.00 0.00 0.00 5.54
212 220 2.363306 TTGCTCGCCCCATGATTAAT 57.637 45.000 0.00 0.00 0.00 1.40
215 223 1.901591 CTCGCCCCATGATTAATGCT 58.098 50.000 0.00 0.00 34.67 3.79
216 224 1.808945 CTCGCCCCATGATTAATGCTC 59.191 52.381 0.00 0.00 34.67 4.26
218 226 1.538512 CGCCCCATGATTAATGCTCTG 59.461 52.381 0.00 0.00 34.67 3.35
274 283 0.664761 CACCGGGCAATGATAAGCTG 59.335 55.000 6.32 0.00 0.00 4.24
292 301 9.397280 GATAAGCTGGGTTATCTTTCTTACTTT 57.603 33.333 19.17 0.00 36.74 2.66
296 305 6.879458 GCTGGGTTATCTTTCTTACTTTCTCA 59.121 38.462 0.00 0.00 0.00 3.27
298 307 7.974504 TGGGTTATCTTTCTTACTTTCTCACT 58.025 34.615 0.00 0.00 0.00 3.41
302 311 9.490379 GTTATCTTTCTTACTTTCTCACTTCCA 57.510 33.333 0.00 0.00 0.00 3.53
310 319 4.792068 ACTTTCTCACTTCCATGTTCCAA 58.208 39.130 0.00 0.00 0.00 3.53
343 355 1.135315 TGCATGCATTCTTTTCTCGGC 60.135 47.619 18.46 0.00 0.00 5.54
371 383 2.729882 GCGGTAAGCGTTGTCATATAGG 59.270 50.000 0.00 0.00 35.41 2.57
372 384 3.551454 GCGGTAAGCGTTGTCATATAGGA 60.551 47.826 0.00 0.00 35.41 2.94
373 385 4.806330 CGGTAAGCGTTGTCATATAGGAT 58.194 43.478 0.00 0.00 0.00 3.24
374 386 4.857588 CGGTAAGCGTTGTCATATAGGATC 59.142 45.833 0.00 0.00 0.00 3.36
375 387 5.169295 GGTAAGCGTTGTCATATAGGATCC 58.831 45.833 2.48 2.48 0.00 3.36
376 388 3.577649 AGCGTTGTCATATAGGATCCG 57.422 47.619 5.98 0.00 0.00 4.18
377 389 2.231478 AGCGTTGTCATATAGGATCCGG 59.769 50.000 5.98 0.00 0.00 5.14
378 390 2.607187 CGTTGTCATATAGGATCCGGC 58.393 52.381 5.98 0.00 0.00 6.13
379 391 2.231478 CGTTGTCATATAGGATCCGGCT 59.769 50.000 5.98 0.00 0.00 5.52
380 392 3.306088 CGTTGTCATATAGGATCCGGCTT 60.306 47.826 5.98 0.00 0.00 4.35
381 393 3.961480 TGTCATATAGGATCCGGCTTG 57.039 47.619 5.98 3.86 0.00 4.01
382 394 2.028112 TGTCATATAGGATCCGGCTTGC 60.028 50.000 5.98 0.00 0.00 4.01
383 395 2.234908 GTCATATAGGATCCGGCTTGCT 59.765 50.000 5.98 0.00 0.00 3.91
384 396 2.906389 TCATATAGGATCCGGCTTGCTT 59.094 45.455 5.98 0.00 0.00 3.91
385 397 2.839486 TATAGGATCCGGCTTGCTTG 57.161 50.000 5.98 0.00 0.00 4.01
386 398 0.536006 ATAGGATCCGGCTTGCTTGC 60.536 55.000 5.98 0.00 0.00 4.01
387 399 1.626356 TAGGATCCGGCTTGCTTGCT 61.626 55.000 5.98 0.00 0.00 3.91
388 400 2.476320 GGATCCGGCTTGCTTGCTC 61.476 63.158 0.00 0.00 0.00 4.26
389 401 2.439156 ATCCGGCTTGCTTGCTCC 60.439 61.111 0.00 0.00 0.00 4.70
390 402 4.722700 TCCGGCTTGCTTGCTCCC 62.723 66.667 0.00 0.00 0.00 4.30
391 403 4.729918 CCGGCTTGCTTGCTCCCT 62.730 66.667 0.00 0.00 0.00 4.20
392 404 3.130160 CGGCTTGCTTGCTCCCTC 61.130 66.667 1.96 0.00 0.00 4.30
393 405 2.354343 GGCTTGCTTGCTCCCTCT 59.646 61.111 1.96 0.00 0.00 3.69
394 406 1.303970 GGCTTGCTTGCTCCCTCTT 60.304 57.895 1.96 0.00 0.00 2.85
395 407 1.311651 GGCTTGCTTGCTCCCTCTTC 61.312 60.000 1.96 0.00 0.00 2.87
396 408 0.607489 GCTTGCTTGCTCCCTCTTCA 60.607 55.000 0.00 0.00 0.00 3.02
397 409 1.954258 GCTTGCTTGCTCCCTCTTCAT 60.954 52.381 0.00 0.00 0.00 2.57
398 410 1.743958 CTTGCTTGCTCCCTCTTCATG 59.256 52.381 0.00 0.00 0.00 3.07
399 411 0.679002 TGCTTGCTCCCTCTTCATGC 60.679 55.000 0.00 0.00 0.00 4.06
400 412 0.394080 GCTTGCTCCCTCTTCATGCT 60.394 55.000 0.00 0.00 0.00 3.79
401 413 1.666054 CTTGCTCCCTCTTCATGCTC 58.334 55.000 0.00 0.00 0.00 4.26
402 414 1.209990 CTTGCTCCCTCTTCATGCTCT 59.790 52.381 0.00 0.00 0.00 4.09
403 415 0.829333 TGCTCCCTCTTCATGCTCTC 59.171 55.000 0.00 0.00 0.00 3.20
404 416 0.829333 GCTCCCTCTTCATGCTCTCA 59.171 55.000 0.00 0.00 0.00 3.27
405 417 1.417145 GCTCCCTCTTCATGCTCTCAT 59.583 52.381 0.00 0.00 0.00 2.90
406 418 2.548493 GCTCCCTCTTCATGCTCTCATC 60.548 54.545 0.00 0.00 0.00 2.92
407 419 2.037511 CTCCCTCTTCATGCTCTCATCC 59.962 54.545 0.00 0.00 0.00 3.51
408 420 1.270199 CCCTCTTCATGCTCTCATCCG 60.270 57.143 0.00 0.00 0.00 4.18
409 421 1.411977 CCTCTTCATGCTCTCATCCGT 59.588 52.381 0.00 0.00 0.00 4.69
410 422 2.471818 CTCTTCATGCTCTCATCCGTG 58.528 52.381 0.00 0.00 0.00 4.94
411 423 1.827344 TCTTCATGCTCTCATCCGTGT 59.173 47.619 0.00 0.00 0.00 4.49
412 424 2.234661 TCTTCATGCTCTCATCCGTGTT 59.765 45.455 0.00 0.00 0.00 3.32
413 425 2.768253 TCATGCTCTCATCCGTGTTT 57.232 45.000 0.00 0.00 0.00 2.83
414 426 2.621338 TCATGCTCTCATCCGTGTTTC 58.379 47.619 0.00 0.00 0.00 2.78
415 427 1.667724 CATGCTCTCATCCGTGTTTCC 59.332 52.381 0.00 0.00 0.00 3.13
416 428 0.684535 TGCTCTCATCCGTGTTTCCA 59.315 50.000 0.00 0.00 0.00 3.53
417 429 1.079503 GCTCTCATCCGTGTTTCCAC 58.920 55.000 0.00 0.00 38.27 4.02
418 430 1.338200 GCTCTCATCCGTGTTTCCACT 60.338 52.381 0.00 0.00 39.55 4.00
419 431 2.872038 GCTCTCATCCGTGTTTCCACTT 60.872 50.000 0.00 0.00 39.55 3.16
420 432 2.996621 CTCTCATCCGTGTTTCCACTTC 59.003 50.000 0.00 0.00 39.55 3.01
421 433 2.367241 TCTCATCCGTGTTTCCACTTCA 59.633 45.455 0.00 0.00 39.55 3.02
422 434 3.007940 TCTCATCCGTGTTTCCACTTCAT 59.992 43.478 0.00 0.00 39.55 2.57
423 435 3.334691 TCATCCGTGTTTCCACTTCATC 58.665 45.455 0.00 0.00 39.55 2.92
424 436 1.790755 TCCGTGTTTCCACTTCATCG 58.209 50.000 0.00 0.00 39.55 3.84
425 437 1.069513 TCCGTGTTTCCACTTCATCGT 59.930 47.619 0.00 0.00 39.55 3.73
426 438 2.296752 TCCGTGTTTCCACTTCATCGTA 59.703 45.455 0.00 0.00 39.55 3.43
427 439 2.410730 CCGTGTTTCCACTTCATCGTAC 59.589 50.000 0.00 0.00 39.55 3.67
428 440 2.090041 CGTGTTTCCACTTCATCGTACG 59.910 50.000 9.53 9.53 39.55 3.67
429 441 3.311106 GTGTTTCCACTTCATCGTACGA 58.689 45.455 21.93 21.93 38.61 3.43
430 442 3.120782 GTGTTTCCACTTCATCGTACGAC 59.879 47.826 22.14 4.18 38.61 4.34
431 443 3.005050 TGTTTCCACTTCATCGTACGACT 59.995 43.478 22.14 7.25 0.00 4.18
432 444 2.913777 TCCACTTCATCGTACGACTG 57.086 50.000 22.14 18.67 0.00 3.51
433 445 2.156917 TCCACTTCATCGTACGACTGT 58.843 47.619 22.14 13.53 0.00 3.55
434 446 2.161012 TCCACTTCATCGTACGACTGTC 59.839 50.000 22.14 0.00 0.00 3.51
435 447 2.161808 CCACTTCATCGTACGACTGTCT 59.838 50.000 22.14 0.32 0.00 3.41
436 448 3.366070 CCACTTCATCGTACGACTGTCTT 60.366 47.826 22.14 0.00 0.00 3.01
437 449 4.227538 CACTTCATCGTACGACTGTCTTT 58.772 43.478 22.14 0.00 0.00 2.52
438 450 4.680110 CACTTCATCGTACGACTGTCTTTT 59.320 41.667 22.14 0.00 0.00 2.27
439 451 5.175126 CACTTCATCGTACGACTGTCTTTTT 59.825 40.000 22.14 0.00 0.00 1.94
479 491 9.261035 TCTAATCTAATCAGTAATCATCTCCCC 57.739 37.037 0.00 0.00 0.00 4.81
480 492 9.265862 CTAATCTAATCAGTAATCATCTCCCCT 57.734 37.037 0.00 0.00 0.00 4.79
481 493 7.732222 ATCTAATCAGTAATCATCTCCCCTC 57.268 40.000 0.00 0.00 0.00 4.30
482 494 6.019748 TCTAATCAGTAATCATCTCCCCTCC 58.980 44.000 0.00 0.00 0.00 4.30
483 495 4.500389 ATCAGTAATCATCTCCCCTCCT 57.500 45.455 0.00 0.00 0.00 3.69
484 496 3.581101 TCAGTAATCATCTCCCCTCCTG 58.419 50.000 0.00 0.00 0.00 3.86
485 497 3.207549 TCAGTAATCATCTCCCCTCCTGA 59.792 47.826 0.00 0.00 0.00 3.86
486 498 4.140591 TCAGTAATCATCTCCCCTCCTGAT 60.141 45.833 0.00 0.00 0.00 2.90
487 499 4.596643 CAGTAATCATCTCCCCTCCTGATT 59.403 45.833 0.00 0.00 40.44 2.57
488 500 5.072872 CAGTAATCATCTCCCCTCCTGATTT 59.927 44.000 2.37 0.00 38.77 2.17
489 501 5.674035 AGTAATCATCTCCCCTCCTGATTTT 59.326 40.000 2.37 0.00 38.77 1.82
490 502 6.851836 AGTAATCATCTCCCCTCCTGATTTTA 59.148 38.462 2.37 0.00 38.77 1.52
491 503 6.596869 AATCATCTCCCCTCCTGATTTTAA 57.403 37.500 0.00 0.00 35.38 1.52
492 504 6.596869 ATCATCTCCCCTCCTGATTTTAAA 57.403 37.500 0.00 0.00 0.00 1.52
493 505 6.006275 TCATCTCCCCTCCTGATTTTAAAG 57.994 41.667 0.00 0.00 0.00 1.85
494 506 4.862641 TCTCCCCTCCTGATTTTAAAGG 57.137 45.455 0.00 0.00 34.65 3.11
495 507 3.527665 TCTCCCCTCCTGATTTTAAAGGG 59.472 47.826 0.00 0.00 45.34 3.95
497 509 3.757947 CCCTCCTGATTTTAAAGGGGT 57.242 47.619 0.00 0.00 42.57 4.95
498 510 3.365472 CCCTCCTGATTTTAAAGGGGTG 58.635 50.000 0.00 0.00 42.57 4.61
499 511 3.365472 CCTCCTGATTTTAAAGGGGTGG 58.635 50.000 0.00 0.00 31.45 4.61
500 512 3.365472 CTCCTGATTTTAAAGGGGTGGG 58.635 50.000 0.00 0.00 34.08 4.61
501 513 2.997463 TCCTGATTTTAAAGGGGTGGGA 59.003 45.455 0.00 0.00 34.08 4.37
502 514 3.600617 TCCTGATTTTAAAGGGGTGGGAT 59.399 43.478 0.00 0.00 34.08 3.85
503 515 3.960755 CCTGATTTTAAAGGGGTGGGATC 59.039 47.826 0.00 0.00 0.00 3.36
504 516 3.626930 TGATTTTAAAGGGGTGGGATCG 58.373 45.455 0.00 0.00 0.00 3.69
505 517 2.517998 TTTTAAAGGGGTGGGATCGG 57.482 50.000 0.00 0.00 0.00 4.18
506 518 1.671293 TTTAAAGGGGTGGGATCGGA 58.329 50.000 0.00 0.00 0.00 4.55
507 519 0.913924 TTAAAGGGGTGGGATCGGAC 59.086 55.000 0.00 0.00 0.00 4.79
508 520 0.984432 TAAAGGGGTGGGATCGGACC 60.984 60.000 3.61 3.61 0.00 4.46
509 521 2.782997 AAAGGGGTGGGATCGGACCT 62.783 60.000 10.68 0.54 32.33 3.85
510 522 2.691252 GGGGTGGGATCGGACCTT 60.691 66.667 10.68 0.00 32.33 3.50
511 523 1.383525 GGGGTGGGATCGGACCTTA 60.384 63.158 10.68 0.00 32.33 2.69
512 524 0.767060 GGGGTGGGATCGGACCTTAT 60.767 60.000 10.68 0.00 32.33 1.73
513 525 1.137697 GGGTGGGATCGGACCTTATT 58.862 55.000 10.68 0.00 32.33 1.40
514 526 1.493446 GGGTGGGATCGGACCTTATTT 59.507 52.381 10.68 0.00 32.33 1.40
515 527 2.092049 GGGTGGGATCGGACCTTATTTT 60.092 50.000 10.68 0.00 32.33 1.82
516 528 3.136992 GGGTGGGATCGGACCTTATTTTA 59.863 47.826 10.68 0.00 32.33 1.52
517 529 4.202535 GGGTGGGATCGGACCTTATTTTAT 60.203 45.833 10.68 0.00 32.33 1.40
518 530 5.382616 GGTGGGATCGGACCTTATTTTATT 58.617 41.667 4.82 0.00 0.00 1.40
519 531 5.831525 GGTGGGATCGGACCTTATTTTATTT 59.168 40.000 4.82 0.00 0.00 1.40
520 532 6.016527 GGTGGGATCGGACCTTATTTTATTTC 60.017 42.308 4.82 0.00 0.00 2.17
521 533 6.544564 GTGGGATCGGACCTTATTTTATTTCA 59.455 38.462 0.00 0.00 0.00 2.69
522 534 7.067737 GTGGGATCGGACCTTATTTTATTTCAA 59.932 37.037 0.00 0.00 0.00 2.69
523 535 7.782644 TGGGATCGGACCTTATTTTATTTCAAT 59.217 33.333 0.00 0.00 0.00 2.57
524 536 8.638873 GGGATCGGACCTTATTTTATTTCAATT 58.361 33.333 0.00 0.00 0.00 2.32
542 554 8.422973 TTTCAATTAAATCAAGCCACATATGC 57.577 30.769 1.58 0.00 0.00 3.14
543 555 6.207928 TCAATTAAATCAAGCCACATATGCG 58.792 36.000 1.58 0.00 0.00 4.73
544 556 6.039159 TCAATTAAATCAAGCCACATATGCGA 59.961 34.615 1.58 0.00 0.00 5.10
545 557 3.976793 AAATCAAGCCACATATGCGAG 57.023 42.857 1.58 0.00 0.00 5.03
546 558 2.916702 ATCAAGCCACATATGCGAGA 57.083 45.000 1.58 0.00 0.00 4.04
547 559 2.229675 TCAAGCCACATATGCGAGAG 57.770 50.000 1.58 0.00 0.00 3.20
562 574 2.736978 CGAGAGCATAGATGGACACAC 58.263 52.381 0.00 0.00 0.00 3.82
563 575 2.736978 GAGAGCATAGATGGACACACG 58.263 52.381 0.00 0.00 0.00 4.49
564 576 1.202463 AGAGCATAGATGGACACACGC 60.202 52.381 0.00 0.00 0.00 5.34
565 577 0.528466 AGCATAGATGGACACACGCG 60.528 55.000 3.53 3.53 0.00 6.01
566 578 1.927210 CATAGATGGACACACGCGC 59.073 57.895 5.73 0.00 0.00 6.86
567 579 1.588932 ATAGATGGACACACGCGCG 60.589 57.895 30.96 30.96 0.00 6.86
568 580 2.954020 ATAGATGGACACACGCGCGG 62.954 60.000 35.22 24.36 0.00 6.46
607 619 9.120422 GGGTATTCATAAAGTTTAACACGTTTG 57.880 33.333 0.00 0.00 0.00 2.93
634 646 1.493022 TGATTAGGCCCGCAATTAGGT 59.507 47.619 0.00 0.00 0.00 3.08
644 656 4.156008 GCCCGCAATTAGGTATAATCCTTG 59.844 45.833 0.00 0.00 38.86 3.61
664 676 3.794717 TGTGTTTAGCTGGACGTAAACA 58.205 40.909 7.74 7.74 43.53 2.83
785 805 6.073112 GGTCCTGCGTATATATACTAGCTAGC 60.073 46.154 20.91 6.62 0.00 3.42
786 806 6.707161 GTCCTGCGTATATATACTAGCTAGCT 59.293 42.308 23.12 23.12 0.00 3.32
787 807 7.871973 GTCCTGCGTATATATACTAGCTAGCTA 59.128 40.741 22.85 22.85 0.00 3.32
840 860 2.776072 GTGGAATCGCGTGGTTCG 59.224 61.111 15.36 0.00 43.12 3.95
927 947 2.923619 TGGGACACTTCCACACTCA 58.076 52.632 0.00 0.00 44.98 3.41
962 983 2.905415 TTCCCTCCTTGATGCATTGT 57.095 45.000 0.00 0.00 0.00 2.71
991 1016 3.620428 CACGTGCGCAGGCTATCG 61.620 66.667 28.53 20.76 40.82 2.92
999 1024 1.133216 GCGCAGGCTATCGATCTATCA 59.867 52.381 0.00 0.00 35.83 2.15
1137 1169 3.138798 GACCGCGAGCAGAGGGTA 61.139 66.667 8.23 0.00 44.78 3.69
1254 1286 2.159462 GGTGAGTTACCGAGTTCGTAGG 60.159 54.545 0.48 0.00 40.26 3.18
1287 1319 0.107312 AGTCCATGTGCCATCTCTGC 60.107 55.000 0.00 0.00 0.00 4.26
1365 1397 0.109153 ACAACCGGTGGAAAGGGTAC 59.891 55.000 18.24 0.00 32.68 3.34
1575 1607 5.648572 GTCGTAGCACAGGTAAAGTTCTAT 58.351 41.667 0.00 0.00 0.00 1.98
1618 1650 5.525378 AGTTGAGTCATGAGTTCAGTTCAAC 59.475 40.000 16.88 16.88 41.92 3.18
1840 1878 4.288531 GCAATGAGCTCATCACATTTAGC 58.711 43.478 28.83 17.25 41.91 3.09
1861 1899 3.244422 GCCATGGGACCGATAAGATTGTA 60.244 47.826 15.13 0.00 0.00 2.41
1974 2018 9.418045 CTGTAAATTGGTGTAAATTAAGGTTGG 57.582 33.333 0.00 0.00 0.00 3.77
2013 2057 5.984233 AATGGTATGTGTATAGTGTTGCG 57.016 39.130 0.00 0.00 0.00 4.85
2090 2134 2.195139 GCTGCCATGATCCTGCCT 59.805 61.111 0.00 0.00 0.00 4.75
2092 2136 1.597302 CTGCCATGATCCTGCCTCG 60.597 63.158 0.00 0.00 0.00 4.63
2144 2188 0.322997 CCATGGGGCAAAAGTACCGA 60.323 55.000 2.85 0.00 0.00 4.69
2153 2197 3.254903 GGCAAAAGTACCGATGACCTTTT 59.745 43.478 0.00 0.00 37.55 2.27
2167 2211 5.801531 TGACCTTTTCTGTTCACTAGCTA 57.198 39.130 0.00 0.00 0.00 3.32
2168 2212 6.169557 TGACCTTTTCTGTTCACTAGCTAA 57.830 37.500 0.00 0.00 0.00 3.09
2169 2213 6.769512 TGACCTTTTCTGTTCACTAGCTAAT 58.230 36.000 0.00 0.00 0.00 1.73
2170 2214 7.224297 TGACCTTTTCTGTTCACTAGCTAATT 58.776 34.615 0.00 0.00 0.00 1.40
2171 2215 7.173218 TGACCTTTTCTGTTCACTAGCTAATTG 59.827 37.037 0.00 0.00 0.00 2.32
2172 2216 6.998673 ACCTTTTCTGTTCACTAGCTAATTGT 59.001 34.615 0.00 0.00 0.00 2.71
2173 2217 7.502561 ACCTTTTCTGTTCACTAGCTAATTGTT 59.497 33.333 0.00 0.00 0.00 2.83
2174 2218 8.017946 CCTTTTCTGTTCACTAGCTAATTGTTC 58.982 37.037 0.00 0.00 0.00 3.18
2175 2219 6.706055 TTCTGTTCACTAGCTAATTGTTCG 57.294 37.500 0.00 0.00 0.00 3.95
2176 2220 5.779922 TCTGTTCACTAGCTAATTGTTCGT 58.220 37.500 0.00 0.00 0.00 3.85
2177 2221 5.633601 TCTGTTCACTAGCTAATTGTTCGTG 59.366 40.000 0.00 0.00 0.00 4.35
2178 2222 4.151689 TGTTCACTAGCTAATTGTTCGTGC 59.848 41.667 0.00 0.00 0.00 5.34
2179 2223 2.921121 TCACTAGCTAATTGTTCGTGCG 59.079 45.455 0.00 0.00 0.00 5.34
2180 2224 2.666508 CACTAGCTAATTGTTCGTGCGT 59.333 45.455 0.00 0.00 0.00 5.24
2181 2225 3.855379 CACTAGCTAATTGTTCGTGCGTA 59.145 43.478 0.00 0.00 0.00 4.42
2182 2226 4.027621 CACTAGCTAATTGTTCGTGCGTAG 60.028 45.833 0.00 0.00 0.00 3.51
2201 2245 6.426980 CGTAGCAATGATGGCATACATATT 57.573 37.500 0.00 0.00 40.72 1.28
2202 2246 6.481134 CGTAGCAATGATGGCATACATATTC 58.519 40.000 0.00 0.00 40.72 1.75
2203 2247 6.314648 CGTAGCAATGATGGCATACATATTCT 59.685 38.462 0.00 6.79 40.72 2.40
2204 2248 7.492344 CGTAGCAATGATGGCATACATATTCTA 59.508 37.037 0.00 5.99 40.72 2.10
2205 2249 9.334947 GTAGCAATGATGGCATACATATTCTAT 57.665 33.333 0.00 0.00 40.72 1.98
2206 2250 8.818622 AGCAATGATGGCATACATATTCTATT 57.181 30.769 0.00 0.00 40.72 1.73
2207 2251 8.683615 AGCAATGATGGCATACATATTCTATTG 58.316 33.333 0.00 2.19 40.72 1.90
2208 2252 7.919091 GCAATGATGGCATACATATTCTATTGG 59.081 37.037 0.00 0.00 40.72 3.16
2209 2253 8.963725 CAATGATGGCATACATATTCTATTGGT 58.036 33.333 0.00 0.00 40.72 3.67
2210 2254 9.537852 AATGATGGCATACATATTCTATTGGTT 57.462 29.630 0.00 0.00 40.72 3.67
2211 2255 8.565896 TGATGGCATACATATTCTATTGGTTC 57.434 34.615 0.00 0.00 40.72 3.62
2212 2256 8.162746 TGATGGCATACATATTCTATTGGTTCA 58.837 33.333 0.00 0.00 40.72 3.18
2213 2257 8.938801 ATGGCATACATATTCTATTGGTTCAA 57.061 30.769 0.00 0.00 38.26 2.69
2214 2258 8.165239 TGGCATACATATTCTATTGGTTCAAC 57.835 34.615 0.00 0.00 0.00 3.18
2215 2259 7.777440 TGGCATACATATTCTATTGGTTCAACA 59.223 33.333 0.00 0.00 0.00 3.33
2216 2260 8.629158 GGCATACATATTCTATTGGTTCAACAA 58.371 33.333 0.00 0.00 34.41 2.83
2217 2261 9.669353 GCATACATATTCTATTGGTTCAACAAG 57.331 33.333 0.00 0.00 33.23 3.16
2219 2263 7.100458 ACATATTCTATTGGTTCAACAAGGC 57.900 36.000 0.00 0.00 33.23 4.35
2220 2264 6.891908 ACATATTCTATTGGTTCAACAAGGCT 59.108 34.615 0.00 0.00 33.23 4.58
2221 2265 5.904362 ATTCTATTGGTTCAACAAGGCTC 57.096 39.130 0.00 0.00 33.23 4.70
2222 2266 4.365514 TCTATTGGTTCAACAAGGCTCA 57.634 40.909 0.00 0.00 33.23 4.26
2223 2267 4.922206 TCTATTGGTTCAACAAGGCTCAT 58.078 39.130 0.00 0.00 33.23 2.90
2224 2268 6.061022 TCTATTGGTTCAACAAGGCTCATA 57.939 37.500 0.00 0.00 33.23 2.15
2225 2269 6.662755 TCTATTGGTTCAACAAGGCTCATAT 58.337 36.000 0.00 0.00 33.23 1.78
2226 2270 7.118723 TCTATTGGTTCAACAAGGCTCATATT 58.881 34.615 0.00 0.00 33.23 1.28
2227 2271 5.389859 TTGGTTCAACAAGGCTCATATTG 57.610 39.130 0.00 0.00 0.00 1.90
2228 2272 3.193267 TGGTTCAACAAGGCTCATATTGC 59.807 43.478 0.00 0.00 0.00 3.56
2229 2273 3.193267 GGTTCAACAAGGCTCATATTGCA 59.807 43.478 0.00 0.00 0.00 4.08
2230 2274 4.321899 GGTTCAACAAGGCTCATATTGCAA 60.322 41.667 0.00 0.00 0.00 4.08
2231 2275 5.229423 GTTCAACAAGGCTCATATTGCAAA 58.771 37.500 1.71 0.00 0.00 3.68
2232 2276 5.063180 TCAACAAGGCTCATATTGCAAAG 57.937 39.130 1.71 0.00 0.00 2.77
2233 2277 3.515330 ACAAGGCTCATATTGCAAAGC 57.485 42.857 11.60 11.60 0.00 3.51
2234 2278 2.159338 ACAAGGCTCATATTGCAAAGCG 60.159 45.455 13.25 4.31 35.58 4.68
2235 2279 0.383231 AGGCTCATATTGCAAAGCGC 59.617 50.000 13.25 0.00 42.89 5.92
2236 2280 0.383231 GGCTCATATTGCAAAGCGCT 59.617 50.000 2.64 2.64 43.06 5.92
2237 2281 1.474017 GCTCATATTGCAAAGCGCTG 58.526 50.000 12.58 0.00 43.06 5.18
2238 2282 1.064505 GCTCATATTGCAAAGCGCTGA 59.935 47.619 12.58 0.00 43.06 4.26
2239 2283 2.853662 GCTCATATTGCAAAGCGCTGAG 60.854 50.000 12.58 12.07 43.06 3.35
2250 2294 3.318875 CGCTGAGCACAACACGAA 58.681 55.556 4.88 0.00 0.00 3.85
2251 2295 1.083401 CGCTGAGCACAACACGAAC 60.083 57.895 4.88 0.00 0.00 3.95
2252 2296 1.279840 GCTGAGCACAACACGAACC 59.720 57.895 0.00 0.00 0.00 3.62
2253 2297 1.160329 GCTGAGCACAACACGAACCT 61.160 55.000 0.00 0.00 0.00 3.50
2254 2298 1.872237 GCTGAGCACAACACGAACCTA 60.872 52.381 0.00 0.00 0.00 3.08
2255 2299 2.479837 CTGAGCACAACACGAACCTAA 58.520 47.619 0.00 0.00 0.00 2.69
2256 2300 2.869801 CTGAGCACAACACGAACCTAAA 59.130 45.455 0.00 0.00 0.00 1.85
2257 2301 2.610374 TGAGCACAACACGAACCTAAAC 59.390 45.455 0.00 0.00 0.00 2.01
2258 2302 1.944709 AGCACAACACGAACCTAAACC 59.055 47.619 0.00 0.00 0.00 3.27
2259 2303 1.944709 GCACAACACGAACCTAAACCT 59.055 47.619 0.00 0.00 0.00 3.50
2260 2304 2.356695 GCACAACACGAACCTAAACCTT 59.643 45.455 0.00 0.00 0.00 3.50
2261 2305 3.790789 GCACAACACGAACCTAAACCTTG 60.791 47.826 0.00 0.00 0.00 3.61
2262 2306 2.356695 ACAACACGAACCTAAACCTTGC 59.643 45.455 0.00 0.00 0.00 4.01
2263 2307 2.616842 CAACACGAACCTAAACCTTGCT 59.383 45.455 0.00 0.00 0.00 3.91
2264 2308 2.218603 ACACGAACCTAAACCTTGCTG 58.781 47.619 0.00 0.00 0.00 4.41
2265 2309 1.069227 CACGAACCTAAACCTTGCTGC 60.069 52.381 0.00 0.00 0.00 5.25
2266 2310 1.234821 CGAACCTAAACCTTGCTGCA 58.765 50.000 0.00 0.00 0.00 4.41
2267 2311 1.606668 CGAACCTAAACCTTGCTGCAA 59.393 47.619 15.16 15.16 0.00 4.08
2268 2312 2.034053 CGAACCTAAACCTTGCTGCAAA 59.966 45.455 16.74 0.00 0.00 3.68
2269 2313 3.642705 GAACCTAAACCTTGCTGCAAAG 58.357 45.455 16.74 12.94 0.00 2.77
2270 2314 2.944129 ACCTAAACCTTGCTGCAAAGA 58.056 42.857 17.27 0.00 0.00 2.52
2271 2315 3.295973 ACCTAAACCTTGCTGCAAAGAA 58.704 40.909 17.27 2.41 0.00 2.52
2272 2316 3.319122 ACCTAAACCTTGCTGCAAAGAAG 59.681 43.478 17.27 10.65 0.00 2.85
2273 2317 2.896745 AAACCTTGCTGCAAAGAAGG 57.103 45.000 17.27 16.00 41.85 3.46
2274 2318 1.043022 AACCTTGCTGCAAAGAAGGG 58.957 50.000 17.27 15.50 40.63 3.95
2275 2319 0.829182 ACCTTGCTGCAAAGAAGGGG 60.829 55.000 17.27 14.83 40.63 4.79
2276 2320 0.540365 CCTTGCTGCAAAGAAGGGGA 60.540 55.000 16.74 0.00 33.81 4.81
2277 2321 0.600057 CTTGCTGCAAAGAAGGGGAC 59.400 55.000 16.74 0.00 0.00 4.46
2293 2337 5.584551 AGGGGACTTGAAGATTAGTTTGT 57.415 39.130 0.00 0.00 37.44 2.83
2294 2338 6.697641 AGGGGACTTGAAGATTAGTTTGTA 57.302 37.500 0.00 0.00 37.44 2.41
2295 2339 6.712276 AGGGGACTTGAAGATTAGTTTGTAG 58.288 40.000 0.00 0.00 37.44 2.74
2296 2340 6.272558 AGGGGACTTGAAGATTAGTTTGTAGT 59.727 38.462 0.00 0.00 37.44 2.73
2297 2341 6.594547 GGGGACTTGAAGATTAGTTTGTAGTC 59.405 42.308 0.00 0.00 0.00 2.59
2298 2342 7.159372 GGGACTTGAAGATTAGTTTGTAGTCA 58.841 38.462 0.00 0.00 33.07 3.41
2299 2343 7.824779 GGGACTTGAAGATTAGTTTGTAGTCAT 59.175 37.037 0.00 0.00 33.07 3.06
2300 2344 9.871238 GGACTTGAAGATTAGTTTGTAGTCATA 57.129 33.333 0.00 0.00 33.07 2.15
2322 2366 3.297830 AAAATAGTTCGGCAACAAGGC 57.702 42.857 0.00 0.00 34.60 4.35
2323 2367 2.200373 AATAGTTCGGCAACAAGGCT 57.800 45.000 0.00 0.00 41.46 4.58
2324 2368 2.200373 ATAGTTCGGCAACAAGGCTT 57.800 45.000 0.00 0.00 41.46 4.35
2325 2369 1.234821 TAGTTCGGCAACAAGGCTTG 58.765 50.000 25.06 25.06 41.46 4.01
2327 2371 0.948678 GTTCGGCAACAAGGCTTGTA 59.051 50.000 31.34 14.18 44.59 2.41
2328 2372 1.539827 GTTCGGCAACAAGGCTTGTAT 59.460 47.619 31.34 18.79 44.59 2.29
2329 2373 1.904287 TCGGCAACAAGGCTTGTATT 58.096 45.000 31.34 15.69 44.59 1.89
2330 2374 1.539388 TCGGCAACAAGGCTTGTATTG 59.461 47.619 31.34 26.12 44.59 1.90
2331 2375 1.713597 GGCAACAAGGCTTGTATTGC 58.286 50.000 33.54 33.54 44.59 3.56
2332 2376 1.000731 GGCAACAAGGCTTGTATTGCA 59.999 47.619 37.74 0.00 44.91 4.08
2333 2377 2.547642 GGCAACAAGGCTTGTATTGCAA 60.548 45.455 37.74 0.00 44.91 4.08
2334 2378 3.129871 GCAACAAGGCTTGTATTGCAAA 58.870 40.909 35.03 0.00 43.43 3.68
2335 2379 3.184986 GCAACAAGGCTTGTATTGCAAAG 59.815 43.478 35.03 19.51 43.43 2.77
2336 2380 3.030668 ACAAGGCTTGTATTGCAAAGC 57.969 42.857 30.31 11.60 43.27 3.51
2337 2381 2.289010 ACAAGGCTTGTATTGCAAAGCC 60.289 45.455 30.31 25.87 43.27 4.35
2338 2382 1.928868 AGGCTTGTATTGCAAAGCCT 58.071 45.000 28.86 28.86 46.71 4.58
2339 2383 2.000429 GGCTTGTATTGCAAAGCCTG 58.000 50.000 25.91 9.49 42.62 4.85
2340 2384 1.545582 GGCTTGTATTGCAAAGCCTGA 59.454 47.619 25.91 2.34 42.62 3.86
2341 2385 2.599659 GCTTGTATTGCAAAGCCTGAC 58.400 47.619 1.71 0.00 36.53 3.51
2342 2386 2.855180 CTTGTATTGCAAAGCCTGACG 58.145 47.619 1.71 0.00 36.53 4.35
2343 2387 0.521291 TGTATTGCAAAGCCTGACGC 59.479 50.000 1.71 0.00 37.98 5.19
2344 2388 0.521291 GTATTGCAAAGCCTGACGCA 59.479 50.000 1.71 0.00 41.38 5.24
2345 2389 0.521291 TATTGCAAAGCCTGACGCAC 59.479 50.000 1.71 0.00 41.38 5.34
2346 2390 1.454572 ATTGCAAAGCCTGACGCACA 61.455 50.000 1.71 0.00 41.38 4.57
2347 2391 1.661498 TTGCAAAGCCTGACGCACAA 61.661 50.000 0.00 0.00 41.38 3.33
2348 2392 1.658409 GCAAAGCCTGACGCACAAC 60.658 57.895 0.00 0.00 41.38 3.32
2349 2393 1.008538 CAAAGCCTGACGCACAACC 60.009 57.895 0.00 0.00 41.38 3.77
2350 2394 2.193536 AAAGCCTGACGCACAACCC 61.194 57.895 0.00 0.00 41.38 4.11
2351 2395 2.902423 AAAGCCTGACGCACAACCCA 62.902 55.000 0.00 0.00 41.38 4.51
2352 2396 2.902423 AAGCCTGACGCACAACCCAA 62.902 55.000 0.00 0.00 41.38 4.12
2353 2397 3.030652 CCTGACGCACAACCCAAC 58.969 61.111 0.00 0.00 0.00 3.77
2354 2398 2.551912 CCTGACGCACAACCCAACC 61.552 63.158 0.00 0.00 0.00 3.77
2355 2399 1.821759 CTGACGCACAACCCAACCA 60.822 57.895 0.00 0.00 0.00 3.67
2356 2400 1.152860 TGACGCACAACCCAACCAT 60.153 52.632 0.00 0.00 0.00 3.55
2357 2401 0.753479 TGACGCACAACCCAACCATT 60.753 50.000 0.00 0.00 0.00 3.16
2358 2402 0.318614 GACGCACAACCCAACCATTG 60.319 55.000 0.00 0.00 0.00 2.82
2359 2403 1.040339 ACGCACAACCCAACCATTGT 61.040 50.000 0.00 0.00 39.63 2.71
2360 2404 0.103937 CGCACAACCCAACCATTGTT 59.896 50.000 0.00 0.00 36.92 2.83
2377 2421 5.992729 CATTGTTGCAAAGAAGGGAATTTG 58.007 37.500 0.00 0.00 39.01 2.32
2378 2422 4.070630 TGTTGCAAAGAAGGGAATTTGG 57.929 40.909 0.00 0.00 36.99 3.28
2379 2423 3.181456 TGTTGCAAAGAAGGGAATTTGGG 60.181 43.478 0.00 0.00 36.99 4.12
2380 2424 1.977129 TGCAAAGAAGGGAATTTGGGG 59.023 47.619 0.00 0.00 36.99 4.96
2381 2425 2.256306 GCAAAGAAGGGAATTTGGGGA 58.744 47.619 0.00 0.00 36.99 4.81
2382 2426 2.840038 GCAAAGAAGGGAATTTGGGGAT 59.160 45.455 0.00 0.00 36.99 3.85
2383 2427 3.264193 GCAAAGAAGGGAATTTGGGGATT 59.736 43.478 0.00 0.00 36.99 3.01
2384 2428 4.263462 GCAAAGAAGGGAATTTGGGGATTT 60.263 41.667 0.00 0.00 36.99 2.17
2385 2429 5.045942 GCAAAGAAGGGAATTTGGGGATTTA 60.046 40.000 0.00 0.00 36.99 1.40
2386 2430 6.643388 CAAAGAAGGGAATTTGGGGATTTAG 58.357 40.000 0.00 0.00 33.68 1.85
2387 2431 5.552430 AGAAGGGAATTTGGGGATTTAGT 57.448 39.130 0.00 0.00 0.00 2.24
2388 2432 5.915628 AGAAGGGAATTTGGGGATTTAGTT 58.084 37.500 0.00 0.00 0.00 2.24
2389 2433 5.721480 AGAAGGGAATTTGGGGATTTAGTTG 59.279 40.000 0.00 0.00 0.00 3.16
2390 2434 5.283876 AGGGAATTTGGGGATTTAGTTGA 57.716 39.130 0.00 0.00 0.00 3.18
2391 2435 5.853700 AGGGAATTTGGGGATTTAGTTGAT 58.146 37.500 0.00 0.00 0.00 2.57
2392 2436 5.662657 AGGGAATTTGGGGATTTAGTTGATG 59.337 40.000 0.00 0.00 0.00 3.07
2393 2437 5.425217 GGGAATTTGGGGATTTAGTTGATGT 59.575 40.000 0.00 0.00 0.00 3.06
2394 2438 6.406961 GGGAATTTGGGGATTTAGTTGATGTC 60.407 42.308 0.00 0.00 0.00 3.06
2395 2439 6.154363 GGAATTTGGGGATTTAGTTGATGTCA 59.846 38.462 0.00 0.00 0.00 3.58
2396 2440 5.975693 TTTGGGGATTTAGTTGATGTCAC 57.024 39.130 0.00 0.00 0.00 3.67
2397 2441 4.649267 TGGGGATTTAGTTGATGTCACA 57.351 40.909 0.00 0.00 0.00 3.58
2398 2442 4.588899 TGGGGATTTAGTTGATGTCACAG 58.411 43.478 0.00 0.00 0.00 3.66
2399 2443 4.042809 TGGGGATTTAGTTGATGTCACAGT 59.957 41.667 0.00 0.00 0.00 3.55
2400 2444 4.636206 GGGGATTTAGTTGATGTCACAGTC 59.364 45.833 0.00 0.00 0.00 3.51
2401 2445 4.330074 GGGATTTAGTTGATGTCACAGTCG 59.670 45.833 0.00 0.00 0.00 4.18
2402 2446 4.929808 GGATTTAGTTGATGTCACAGTCGT 59.070 41.667 0.00 0.00 0.00 4.34
2403 2447 6.097356 GGATTTAGTTGATGTCACAGTCGTA 58.903 40.000 0.00 0.00 0.00 3.43
2404 2448 6.757010 GGATTTAGTTGATGTCACAGTCGTAT 59.243 38.462 0.00 0.00 0.00 3.06
2405 2449 7.919091 GGATTTAGTTGATGTCACAGTCGTATA 59.081 37.037 0.00 0.00 0.00 1.47
2406 2450 9.297586 GATTTAGTTGATGTCACAGTCGTATAA 57.702 33.333 0.00 0.00 0.00 0.98
2407 2451 9.647797 ATTTAGTTGATGTCACAGTCGTATAAA 57.352 29.630 0.00 0.00 0.00 1.40
2408 2452 9.478768 TTTAGTTGATGTCACAGTCGTATAAAA 57.521 29.630 0.00 0.00 0.00 1.52
2409 2453 7.956420 AGTTGATGTCACAGTCGTATAAAAA 57.044 32.000 0.00 0.00 0.00 1.94
2429 2473 6.894339 AAAAATAACTGTTCCACGAGGATT 57.106 33.333 1.26 0.00 45.26 3.01
2430 2474 5.880054 AAATAACTGTTCCACGAGGATTG 57.120 39.130 1.26 0.00 45.26 2.67
2431 2475 1.523758 AACTGTTCCACGAGGATTGC 58.476 50.000 1.26 0.00 45.26 3.56
2432 2476 0.396435 ACTGTTCCACGAGGATTGCA 59.604 50.000 1.26 2.08 45.26 4.08
2433 2477 1.202758 ACTGTTCCACGAGGATTGCAA 60.203 47.619 0.00 0.00 45.26 4.08
2434 2478 1.197721 CTGTTCCACGAGGATTGCAAC 59.802 52.381 0.00 0.00 45.26 4.17
2435 2479 1.234821 GTTCCACGAGGATTGCAACA 58.765 50.000 0.00 0.00 45.26 3.33
2436 2480 1.606668 GTTCCACGAGGATTGCAACAA 59.393 47.619 0.00 0.00 45.26 2.83
2437 2481 1.522668 TCCACGAGGATTGCAACAAG 58.477 50.000 0.00 0.00 39.61 3.16
2438 2482 0.523072 CCACGAGGATTGCAACAAGG 59.477 55.000 0.00 0.00 36.89 3.61
2439 2483 0.109597 CACGAGGATTGCAACAAGGC 60.110 55.000 0.00 0.00 0.00 4.35
2440 2484 0.250901 ACGAGGATTGCAACAAGGCT 60.251 50.000 0.00 0.00 34.04 4.58
2441 2485 0.883833 CGAGGATTGCAACAAGGCTT 59.116 50.000 0.00 0.00 34.04 4.35
2442 2486 1.401931 CGAGGATTGCAACAAGGCTTG 60.402 52.381 25.06 25.06 34.04 4.01
2444 2488 1.342174 AGGATTGCAACAAGGCTTGTG 59.658 47.619 31.75 24.35 44.59 3.33
2445 2489 1.069049 GGATTGCAACAAGGCTTGTGT 59.931 47.619 31.75 18.95 44.59 3.72
2446 2490 2.483538 GGATTGCAACAAGGCTTGTGTT 60.484 45.455 31.75 15.88 44.59 3.32
2449 2493 2.976271 CAACAAGGCTTGTGTTGCC 58.024 52.632 31.75 0.00 46.63 4.52
2455 2499 4.641777 GCTTGTGTTGCCAAGAGC 57.358 55.556 5.17 0.00 43.65 4.09
2456 2500 2.036236 GCTTGTGTTGCCAAGAGCT 58.964 52.632 5.17 0.00 43.65 4.09
2457 2501 1.238439 GCTTGTGTTGCCAAGAGCTA 58.762 50.000 5.17 0.00 43.65 3.32
2458 2502 1.608590 GCTTGTGTTGCCAAGAGCTAA 59.391 47.619 5.17 0.00 43.65 3.09
2459 2503 2.351157 GCTTGTGTTGCCAAGAGCTAAG 60.351 50.000 5.17 0.00 43.65 2.18
2460 2504 1.238439 TGTGTTGCCAAGAGCTAAGC 58.762 50.000 0.00 0.00 44.23 3.09
2461 2505 0.166814 GTGTTGCCAAGAGCTAAGCG 59.833 55.000 0.00 0.00 44.23 4.68
2462 2506 1.135523 GTTGCCAAGAGCTAAGCGC 59.864 57.895 0.00 0.00 44.23 5.92
2463 2507 1.302431 TTGCCAAGAGCTAAGCGCA 60.302 52.632 11.47 0.00 44.23 6.09
2464 2508 0.888736 TTGCCAAGAGCTAAGCGCAA 60.889 50.000 11.47 6.65 44.23 4.85
2465 2509 1.135523 GCCAAGAGCTAAGCGCAAC 59.864 57.895 11.47 0.00 42.61 4.17
2466 2510 1.577328 GCCAAGAGCTAAGCGCAACA 61.577 55.000 11.47 0.00 42.61 3.33
2467 2511 1.089920 CCAAGAGCTAAGCGCAACAT 58.910 50.000 11.47 0.00 42.61 2.71
2468 2512 2.279741 CCAAGAGCTAAGCGCAACATA 58.720 47.619 11.47 0.00 42.61 2.29
2469 2513 2.286294 CCAAGAGCTAAGCGCAACATAG 59.714 50.000 11.47 7.66 42.61 2.23
2470 2514 3.190079 CAAGAGCTAAGCGCAACATAGA 58.810 45.455 11.47 0.00 42.61 1.98
2471 2515 3.742433 AGAGCTAAGCGCAACATAGAT 57.258 42.857 11.47 5.01 42.61 1.98
2472 2516 3.648009 AGAGCTAAGCGCAACATAGATC 58.352 45.455 11.47 14.11 42.61 2.75
2473 2517 2.398498 AGCTAAGCGCAACATAGATCG 58.602 47.619 11.47 0.00 42.61 3.69
2474 2518 1.136502 GCTAAGCGCAACATAGATCGC 60.137 52.381 11.47 0.00 46.95 4.58
2476 2520 3.717899 GCGCAACATAGATCGCCA 58.282 55.556 0.30 0.00 41.53 5.69
2477 2521 2.238353 GCGCAACATAGATCGCCAT 58.762 52.632 0.30 0.00 41.53 4.40
2478 2522 0.110509 GCGCAACATAGATCGCCATG 60.111 55.000 0.30 4.15 41.53 3.66
2479 2523 0.514255 CGCAACATAGATCGCCATGG 59.486 55.000 7.63 7.63 0.00 3.66
2480 2524 0.877071 GCAACATAGATCGCCATGGG 59.123 55.000 15.13 3.69 0.00 4.00
2481 2525 1.527034 CAACATAGATCGCCATGGGG 58.473 55.000 22.46 22.46 37.18 4.96
2482 2526 1.072173 CAACATAGATCGCCATGGGGA 59.928 52.381 31.30 31.30 41.24 4.81
2483 2527 1.434188 ACATAGATCGCCATGGGGAA 58.566 50.000 32.55 18.67 40.40 3.97
2484 2528 1.774254 ACATAGATCGCCATGGGGAAA 59.226 47.619 32.55 21.50 40.40 3.13
2485 2529 2.174639 ACATAGATCGCCATGGGGAAAA 59.825 45.455 32.55 21.17 40.40 2.29
2486 2530 3.221771 CATAGATCGCCATGGGGAAAAA 58.778 45.455 32.55 20.85 40.40 1.94
2487 2531 1.767759 AGATCGCCATGGGGAAAAAG 58.232 50.000 32.55 0.00 40.40 2.27
2488 2532 1.005924 AGATCGCCATGGGGAAAAAGT 59.994 47.619 32.55 17.73 40.40 2.66
2489 2533 2.241176 AGATCGCCATGGGGAAAAAGTA 59.759 45.455 32.55 10.91 40.40 2.24
2490 2534 2.818751 TCGCCATGGGGAAAAAGTAT 57.181 45.000 27.91 0.00 35.59 2.12
2491 2535 3.094484 TCGCCATGGGGAAAAAGTATT 57.906 42.857 27.91 0.00 35.59 1.89
2492 2536 2.757868 TCGCCATGGGGAAAAAGTATTG 59.242 45.455 27.91 0.00 35.59 1.90
2493 2537 2.159114 CGCCATGGGGAAAAAGTATTGG 60.159 50.000 23.98 0.00 35.59 3.16
2494 2538 2.837591 GCCATGGGGAAAAAGTATTGGT 59.162 45.455 15.13 0.00 35.59 3.67
2495 2539 3.369366 GCCATGGGGAAAAAGTATTGGTG 60.369 47.826 15.13 0.00 35.59 4.17
2496 2540 4.093011 CCATGGGGAAAAAGTATTGGTGA 58.907 43.478 2.85 0.00 35.59 4.02
2497 2541 4.081697 CCATGGGGAAAAAGTATTGGTGAC 60.082 45.833 2.85 0.00 35.59 3.67
2498 2542 3.502356 TGGGGAAAAAGTATTGGTGACC 58.498 45.455 0.00 0.00 0.00 4.02
2499 2543 3.141272 TGGGGAAAAAGTATTGGTGACCT 59.859 43.478 2.11 0.00 0.00 3.85
2500 2544 4.157246 GGGGAAAAAGTATTGGTGACCTT 58.843 43.478 2.11 0.00 0.00 3.50
2501 2545 4.591498 GGGGAAAAAGTATTGGTGACCTTT 59.409 41.667 2.11 0.00 0.00 3.11
2502 2546 5.279306 GGGGAAAAAGTATTGGTGACCTTTC 60.279 44.000 2.11 2.45 0.00 2.62
2503 2547 5.279306 GGGAAAAAGTATTGGTGACCTTTCC 60.279 44.000 16.59 16.59 37.96 3.13
2504 2548 5.538813 GGAAAAAGTATTGGTGACCTTTCCT 59.461 40.000 17.25 1.46 36.87 3.36
2505 2549 6.405278 AAAAAGTATTGGTGACCTTTCCTG 57.595 37.500 2.11 0.00 0.00 3.86
2506 2550 3.073274 AGTATTGGTGACCTTTCCTGC 57.927 47.619 2.11 0.00 0.00 4.85
2507 2551 2.092323 GTATTGGTGACCTTTCCTGCC 58.908 52.381 2.11 0.00 0.00 4.85
2508 2552 0.251787 ATTGGTGACCTTTCCTGCCC 60.252 55.000 2.11 0.00 0.00 5.36
2509 2553 1.650242 TTGGTGACCTTTCCTGCCCA 61.650 55.000 2.11 0.00 0.00 5.36
2510 2554 1.603739 GGTGACCTTTCCTGCCCAC 60.604 63.158 0.00 0.00 0.00 4.61
2511 2555 1.456287 GTGACCTTTCCTGCCCACT 59.544 57.895 0.00 0.00 0.00 4.00
2512 2556 0.690762 GTGACCTTTCCTGCCCACTA 59.309 55.000 0.00 0.00 0.00 2.74
2513 2557 0.984230 TGACCTTTCCTGCCCACTAG 59.016 55.000 0.00 0.00 0.00 2.57
2514 2558 0.393132 GACCTTTCCTGCCCACTAGC 60.393 60.000 0.00 0.00 0.00 3.42
2515 2559 0.842467 ACCTTTCCTGCCCACTAGCT 60.842 55.000 0.00 0.00 0.00 3.32
2557 2601 9.999009 GCAATGATGACATACATATTCTATTGG 57.001 33.333 0.00 0.00 39.56 3.16
2598 4068 3.186409 CGCCATAAATCTTACACCCATCG 59.814 47.826 0.00 0.00 0.00 3.84
2608 4078 9.485206 AAATCTTACACCCATCGTATTACATAC 57.515 33.333 0.00 0.00 0.00 2.39
2634 4104 9.143631 CCTTGGTAAGATTTGAATTGATTTGAC 57.856 33.333 0.00 0.00 0.00 3.18
2653 4124 1.274447 ACTACGTGTAGGGAAGGCAAC 59.726 52.381 11.45 0.00 37.49 4.17
2678 4149 7.562088 ACTTTTGATTTAGGTGAGGTGGTTTTA 59.438 33.333 0.00 0.00 0.00 1.52
2683 4154 9.238368 TGATTTAGGTGAGGTGGTTTTAATAAG 57.762 33.333 0.00 0.00 0.00 1.73
2684 4155 9.457436 GATTTAGGTGAGGTGGTTTTAATAAGA 57.543 33.333 0.00 0.00 0.00 2.10
2685 4156 9.990868 ATTTAGGTGAGGTGGTTTTAATAAGAT 57.009 29.630 0.00 0.00 0.00 2.40
2686 4157 9.816787 TTTAGGTGAGGTGGTTTTAATAAGATT 57.183 29.630 0.00 0.00 0.00 2.40
2687 4158 9.816787 TTAGGTGAGGTGGTTTTAATAAGATTT 57.183 29.630 0.00 0.00 0.00 2.17
2738 4209 5.696030 AGAAGACAAGGAAAGTTTTAGCCT 58.304 37.500 0.00 0.00 0.00 4.58
2756 4227 3.947834 AGCCTAGGTTTTGGATTCGAATG 59.052 43.478 16.96 0.00 0.00 2.67
2760 4231 2.493278 AGGTTTTGGATTCGAATGCCAG 59.507 45.455 24.51 0.00 32.47 4.85
2761 4232 2.262211 GTTTTGGATTCGAATGCCAGC 58.738 47.619 24.51 11.19 32.47 4.85
2766 4237 0.101219 GATTCGAATGCCAGCAACCC 59.899 55.000 16.96 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.036346 GTGGCTTCACAATTGGCTTTCT 59.964 45.455 10.83 0.00 40.91 2.52
79 85 1.584495 CTGGTCGTGACGTGGATGA 59.416 57.895 4.40 0.00 0.00 2.92
97 103 0.391263 CTCCTCCTACCGTTGTTGCC 60.391 60.000 0.00 0.00 0.00 4.52
125 131 0.037447 ACAGAGAAAGGCAAGGAGGC 59.963 55.000 0.00 0.00 44.61 4.70
162 168 7.889073 CCATATAAGTTACTCTCTAGGCAGGTA 59.111 40.741 0.00 0.00 0.00 3.08
175 181 7.255139 GGCGAGCAAAATTCCATATAAGTTACT 60.255 37.037 0.00 0.00 0.00 2.24
180 186 4.321230 GGGGCGAGCAAAATTCCATATAAG 60.321 45.833 0.00 0.00 0.00 1.73
184 190 1.341482 TGGGGCGAGCAAAATTCCATA 60.341 47.619 0.00 0.00 0.00 2.74
195 201 0.242017 GCATTAATCATGGGGCGAGC 59.758 55.000 0.00 0.00 32.81 5.03
196 202 1.808945 GAGCATTAATCATGGGGCGAG 59.191 52.381 0.00 0.00 32.81 5.03
197 203 1.421268 AGAGCATTAATCATGGGGCGA 59.579 47.619 0.00 0.00 32.81 5.54
198 204 1.538512 CAGAGCATTAATCATGGGGCG 59.461 52.381 0.00 0.00 32.81 6.13
199 205 2.295349 CACAGAGCATTAATCATGGGGC 59.705 50.000 0.00 0.00 32.81 5.80
200 206 2.295349 GCACAGAGCATTAATCATGGGG 59.705 50.000 0.00 0.00 44.79 4.96
201 207 3.637998 GCACAGAGCATTAATCATGGG 57.362 47.619 0.00 0.00 44.79 4.00
215 223 0.103390 TTTCCGTCGTCAAGCACAGA 59.897 50.000 0.00 0.00 0.00 3.41
216 224 0.232303 GTTTCCGTCGTCAAGCACAG 59.768 55.000 0.00 0.00 0.00 3.66
218 226 1.200839 CGTTTCCGTCGTCAAGCAC 59.799 57.895 0.00 0.00 0.00 4.40
243 251 0.321653 GCCCGGTGAGTGTTCTGATT 60.322 55.000 0.00 0.00 0.00 2.57
247 255 0.606401 CATTGCCCGGTGAGTGTTCT 60.606 55.000 0.00 0.00 0.00 3.01
274 283 8.850007 AAGTGAGAAAGTAAGAAAGATAACCC 57.150 34.615 0.00 0.00 0.00 4.11
292 301 3.855255 TGTTGGAACATGGAAGTGAGA 57.145 42.857 0.00 0.00 39.30 3.27
343 355 1.375523 AACGCTTACCGCCTCCTTG 60.376 57.895 0.00 0.00 41.76 3.61
362 374 2.234908 AGCAAGCCGGATCCTATATGAC 59.765 50.000 5.05 1.49 0.00 3.06
363 375 2.540383 AGCAAGCCGGATCCTATATGA 58.460 47.619 5.05 0.00 0.00 2.15
364 376 3.005554 CAAGCAAGCCGGATCCTATATG 58.994 50.000 5.05 5.22 0.00 1.78
365 377 2.616510 GCAAGCAAGCCGGATCCTATAT 60.617 50.000 5.05 0.00 0.00 0.86
366 378 1.270839 GCAAGCAAGCCGGATCCTATA 60.271 52.381 5.05 0.00 0.00 1.31
367 379 0.536006 GCAAGCAAGCCGGATCCTAT 60.536 55.000 5.05 0.00 0.00 2.57
368 380 1.153168 GCAAGCAAGCCGGATCCTA 60.153 57.895 5.05 0.00 0.00 2.94
369 381 2.439156 GCAAGCAAGCCGGATCCT 60.439 61.111 5.05 0.00 0.00 3.24
370 382 2.439156 AGCAAGCAAGCCGGATCC 60.439 61.111 5.05 0.00 34.23 3.36
371 383 2.476320 GGAGCAAGCAAGCCGGATC 61.476 63.158 5.05 0.00 34.23 3.36
372 384 2.439156 GGAGCAAGCAAGCCGGAT 60.439 61.111 5.05 0.00 34.23 4.18
373 385 4.722700 GGGAGCAAGCAAGCCGGA 62.723 66.667 5.05 0.00 34.23 5.14
374 386 4.729918 AGGGAGCAAGCAAGCCGG 62.730 66.667 0.00 0.00 34.23 6.13
375 387 3.130160 GAGGGAGCAAGCAAGCCG 61.130 66.667 0.00 0.00 34.23 5.52
376 388 1.303970 AAGAGGGAGCAAGCAAGCC 60.304 57.895 0.00 0.00 34.23 4.35
377 389 0.607489 TGAAGAGGGAGCAAGCAAGC 60.607 55.000 0.00 0.00 0.00 4.01
378 390 1.743958 CATGAAGAGGGAGCAAGCAAG 59.256 52.381 0.00 0.00 0.00 4.01
379 391 1.830279 CATGAAGAGGGAGCAAGCAA 58.170 50.000 0.00 0.00 0.00 3.91
380 392 0.679002 GCATGAAGAGGGAGCAAGCA 60.679 55.000 0.00 0.00 0.00 3.91
381 393 0.394080 AGCATGAAGAGGGAGCAAGC 60.394 55.000 0.00 0.00 0.00 4.01
382 394 1.209990 AGAGCATGAAGAGGGAGCAAG 59.790 52.381 0.00 0.00 0.00 4.01
383 395 1.209019 GAGAGCATGAAGAGGGAGCAA 59.791 52.381 0.00 0.00 0.00 3.91
384 396 0.829333 GAGAGCATGAAGAGGGAGCA 59.171 55.000 0.00 0.00 0.00 4.26
385 397 0.829333 TGAGAGCATGAAGAGGGAGC 59.171 55.000 0.00 0.00 0.00 4.70
386 398 2.037511 GGATGAGAGCATGAAGAGGGAG 59.962 54.545 0.00 0.00 34.11 4.30
387 399 2.045524 GGATGAGAGCATGAAGAGGGA 58.954 52.381 0.00 0.00 34.11 4.20
388 400 1.270199 CGGATGAGAGCATGAAGAGGG 60.270 57.143 0.00 0.00 34.11 4.30
389 401 1.411977 ACGGATGAGAGCATGAAGAGG 59.588 52.381 0.00 0.00 34.11 3.69
390 402 2.159128 ACACGGATGAGAGCATGAAGAG 60.159 50.000 0.00 0.00 34.11 2.85
391 403 1.827344 ACACGGATGAGAGCATGAAGA 59.173 47.619 0.00 0.00 34.11 2.87
392 404 2.306341 ACACGGATGAGAGCATGAAG 57.694 50.000 0.00 0.00 34.11 3.02
393 405 2.768253 AACACGGATGAGAGCATGAA 57.232 45.000 0.00 0.00 34.11 2.57
394 406 2.621338 GAAACACGGATGAGAGCATGA 58.379 47.619 0.00 0.00 34.11 3.07
395 407 1.667724 GGAAACACGGATGAGAGCATG 59.332 52.381 0.00 0.00 34.11 4.06
396 408 1.278985 TGGAAACACGGATGAGAGCAT 59.721 47.619 0.00 0.00 33.83 3.79
397 409 0.684535 TGGAAACACGGATGAGAGCA 59.315 50.000 0.00 0.00 33.40 4.26
398 410 3.532896 TGGAAACACGGATGAGAGC 57.467 52.632 0.00 0.00 33.40 4.09
409 421 3.005050 AGTCGTACGATGAAGTGGAAACA 59.995 43.478 22.57 0.00 38.70 2.83
410 422 3.364023 CAGTCGTACGATGAAGTGGAAAC 59.636 47.826 22.57 4.19 0.00 2.78
411 423 3.005050 ACAGTCGTACGATGAAGTGGAAA 59.995 43.478 22.57 0.00 0.00 3.13
412 424 2.555325 ACAGTCGTACGATGAAGTGGAA 59.445 45.455 22.57 0.00 0.00 3.53
413 425 2.156917 ACAGTCGTACGATGAAGTGGA 58.843 47.619 22.57 0.00 0.00 4.02
414 426 2.161808 AGACAGTCGTACGATGAAGTGG 59.838 50.000 22.57 8.44 0.00 4.00
415 427 3.473093 AGACAGTCGTACGATGAAGTG 57.527 47.619 22.57 14.00 0.00 3.16
416 428 4.500603 AAAGACAGTCGTACGATGAAGT 57.499 40.909 22.57 16.53 0.00 3.01
417 429 5.824243 AAAAAGACAGTCGTACGATGAAG 57.176 39.130 22.57 13.52 0.00 3.02
453 465 9.261035 GGGGAGATGATTACTGATTAGATTAGA 57.739 37.037 0.00 0.00 0.00 2.10
454 466 9.265862 AGGGGAGATGATTACTGATTAGATTAG 57.734 37.037 0.00 0.00 0.00 1.73
455 467 9.261035 GAGGGGAGATGATTACTGATTAGATTA 57.739 37.037 0.00 0.00 0.00 1.75
456 468 7.181845 GGAGGGGAGATGATTACTGATTAGATT 59.818 40.741 0.00 0.00 0.00 2.40
457 469 6.671779 GGAGGGGAGATGATTACTGATTAGAT 59.328 42.308 0.00 0.00 0.00 1.98
458 470 6.019748 GGAGGGGAGATGATTACTGATTAGA 58.980 44.000 0.00 0.00 0.00 2.10
459 471 6.022315 AGGAGGGGAGATGATTACTGATTAG 58.978 44.000 0.00 0.00 0.00 1.73
460 472 5.782331 CAGGAGGGGAGATGATTACTGATTA 59.218 44.000 0.00 0.00 0.00 1.75
461 473 4.596643 CAGGAGGGGAGATGATTACTGATT 59.403 45.833 0.00 0.00 0.00 2.57
462 474 4.140591 TCAGGAGGGGAGATGATTACTGAT 60.141 45.833 0.00 0.00 0.00 2.90
463 475 3.207549 TCAGGAGGGGAGATGATTACTGA 59.792 47.826 0.00 0.00 0.00 3.41
464 476 3.581101 TCAGGAGGGGAGATGATTACTG 58.419 50.000 0.00 0.00 0.00 2.74
465 477 4.500389 ATCAGGAGGGGAGATGATTACT 57.500 45.455 0.00 0.00 0.00 2.24
466 478 5.574970 AAATCAGGAGGGGAGATGATTAC 57.425 43.478 0.15 0.00 40.54 1.89
467 479 7.705912 TTAAAATCAGGAGGGGAGATGATTA 57.294 36.000 0.15 0.00 40.54 1.75
468 480 6.596869 TTAAAATCAGGAGGGGAGATGATT 57.403 37.500 0.00 0.00 42.61 2.57
469 481 6.411320 CCTTTAAAATCAGGAGGGGAGATGAT 60.411 42.308 0.00 0.00 33.91 2.45
470 482 5.103940 CCTTTAAAATCAGGAGGGGAGATGA 60.104 44.000 0.00 0.00 30.81 2.92
471 483 5.136105 CCTTTAAAATCAGGAGGGGAGATG 58.864 45.833 0.00 0.00 30.81 2.90
472 484 4.168871 CCCTTTAAAATCAGGAGGGGAGAT 59.831 45.833 0.00 0.00 42.73 2.75
473 485 3.527665 CCCTTTAAAATCAGGAGGGGAGA 59.472 47.826 0.00 0.00 42.73 3.71
474 486 3.903467 CCCTTTAAAATCAGGAGGGGAG 58.097 50.000 0.00 0.00 42.73 4.30
477 489 3.365472 CACCCCTTTAAAATCAGGAGGG 58.635 50.000 0.00 0.00 45.42 4.30
478 490 3.365472 CCACCCCTTTAAAATCAGGAGG 58.635 50.000 0.00 0.00 30.81 4.30
479 491 3.011257 TCCCACCCCTTTAAAATCAGGAG 59.989 47.826 0.00 0.00 30.81 3.69
480 492 2.997463 TCCCACCCCTTTAAAATCAGGA 59.003 45.455 0.00 0.00 30.81 3.86
481 493 3.466395 TCCCACCCCTTTAAAATCAGG 57.534 47.619 0.00 0.00 0.00 3.86
482 494 3.632145 CGATCCCACCCCTTTAAAATCAG 59.368 47.826 0.00 0.00 0.00 2.90
483 495 3.626222 CCGATCCCACCCCTTTAAAATCA 60.626 47.826 0.00 0.00 0.00 2.57
484 496 2.956333 CCGATCCCACCCCTTTAAAATC 59.044 50.000 0.00 0.00 0.00 2.17
485 497 2.583566 TCCGATCCCACCCCTTTAAAAT 59.416 45.455 0.00 0.00 0.00 1.82
486 498 1.994047 TCCGATCCCACCCCTTTAAAA 59.006 47.619 0.00 0.00 0.00 1.52
487 499 1.282738 GTCCGATCCCACCCCTTTAAA 59.717 52.381 0.00 0.00 0.00 1.52
488 500 0.913924 GTCCGATCCCACCCCTTTAA 59.086 55.000 0.00 0.00 0.00 1.52
489 501 0.984432 GGTCCGATCCCACCCCTTTA 60.984 60.000 0.00 0.00 0.00 1.85
490 502 2.306384 GGTCCGATCCCACCCCTTT 61.306 63.158 0.00 0.00 0.00 3.11
491 503 2.691252 GGTCCGATCCCACCCCTT 60.691 66.667 0.00 0.00 0.00 3.95
492 504 1.893588 TAAGGTCCGATCCCACCCCT 61.894 60.000 4.41 0.00 32.45 4.79
493 505 0.767060 ATAAGGTCCGATCCCACCCC 60.767 60.000 4.41 0.00 32.45 4.95
494 506 1.137697 AATAAGGTCCGATCCCACCC 58.862 55.000 4.41 0.00 32.45 4.61
495 507 3.292492 AAAATAAGGTCCGATCCCACC 57.708 47.619 0.09 0.09 0.00 4.61
496 508 6.544564 TGAAATAAAATAAGGTCCGATCCCAC 59.455 38.462 0.00 0.00 0.00 4.61
497 509 6.664714 TGAAATAAAATAAGGTCCGATCCCA 58.335 36.000 0.00 0.00 0.00 4.37
498 510 7.576861 TTGAAATAAAATAAGGTCCGATCCC 57.423 36.000 0.00 0.00 0.00 3.85
516 528 9.048446 GCATATGTGGCTTGATTTAATTGAAAT 57.952 29.630 4.29 0.00 40.62 2.17
517 529 7.222417 CGCATATGTGGCTTGATTTAATTGAAA 59.778 33.333 8.46 0.00 0.00 2.69
518 530 6.696583 CGCATATGTGGCTTGATTTAATTGAA 59.303 34.615 8.46 0.00 0.00 2.69
519 531 6.039159 TCGCATATGTGGCTTGATTTAATTGA 59.961 34.615 16.02 0.00 0.00 2.57
520 532 6.207928 TCGCATATGTGGCTTGATTTAATTG 58.792 36.000 16.02 0.00 0.00 2.32
521 533 6.262944 TCTCGCATATGTGGCTTGATTTAATT 59.737 34.615 16.02 0.00 0.00 1.40
522 534 5.764686 TCTCGCATATGTGGCTTGATTTAAT 59.235 36.000 16.02 0.00 0.00 1.40
523 535 5.122519 TCTCGCATATGTGGCTTGATTTAA 58.877 37.500 16.02 0.00 0.00 1.52
524 536 4.702831 TCTCGCATATGTGGCTTGATTTA 58.297 39.130 16.02 0.00 0.00 1.40
525 537 3.544684 TCTCGCATATGTGGCTTGATTT 58.455 40.909 16.02 0.00 0.00 2.17
526 538 3.136763 CTCTCGCATATGTGGCTTGATT 58.863 45.455 16.02 0.00 0.00 2.57
527 539 2.763933 CTCTCGCATATGTGGCTTGAT 58.236 47.619 16.02 0.00 0.00 2.57
528 540 1.807755 GCTCTCGCATATGTGGCTTGA 60.808 52.381 16.02 8.65 35.78 3.02
529 541 0.585357 GCTCTCGCATATGTGGCTTG 59.415 55.000 16.02 5.92 35.78 4.01
530 542 0.178767 TGCTCTCGCATATGTGGCTT 59.821 50.000 16.02 0.00 42.25 4.35
531 543 1.825341 TGCTCTCGCATATGTGGCT 59.175 52.632 16.02 0.00 42.25 4.75
532 544 4.443857 TGCTCTCGCATATGTGGC 57.556 55.556 16.02 11.89 42.25 5.01
541 553 1.067669 TGTGTCCATCTATGCTCTCGC 59.932 52.381 0.00 0.00 0.00 5.03
542 554 2.736978 GTGTGTCCATCTATGCTCTCG 58.263 52.381 0.00 0.00 0.00 4.04
543 555 2.736978 CGTGTGTCCATCTATGCTCTC 58.263 52.381 0.00 0.00 0.00 3.20
544 556 1.202463 GCGTGTGTCCATCTATGCTCT 60.202 52.381 0.00 0.00 0.00 4.09
545 557 1.212616 GCGTGTGTCCATCTATGCTC 58.787 55.000 0.00 0.00 0.00 4.26
546 558 0.528466 CGCGTGTGTCCATCTATGCT 60.528 55.000 0.00 0.00 0.00 3.79
547 559 1.927210 CGCGTGTGTCCATCTATGC 59.073 57.895 0.00 0.00 0.00 3.14
548 560 1.811217 CGCGCGTGTGTCCATCTATG 61.811 60.000 24.19 0.00 0.00 2.23
549 561 1.588932 CGCGCGTGTGTCCATCTAT 60.589 57.895 24.19 0.00 0.00 1.98
550 562 2.202557 CGCGCGTGTGTCCATCTA 60.203 61.111 24.19 0.00 0.00 1.98
634 646 6.046593 CGTCCAGCTAAACACAAGGATTATA 58.953 40.000 0.00 0.00 0.00 0.98
785 805 1.466360 GCAATGCGTGACAAAGCCTAG 60.466 52.381 0.00 0.00 0.00 3.02
786 806 0.521291 GCAATGCGTGACAAAGCCTA 59.479 50.000 0.00 0.00 0.00 3.93
787 807 1.174712 AGCAATGCGTGACAAAGCCT 61.175 50.000 0.00 0.00 33.83 4.58
788 808 0.318955 AAGCAATGCGTGACAAAGCC 60.319 50.000 0.00 0.00 33.83 4.35
840 860 2.399754 GCTGTACGTACGTGATTATCGC 59.600 50.000 30.25 17.35 0.00 4.58
927 947 6.842676 AGGAGGGAATAAATAGAGCGATTTT 58.157 36.000 0.00 0.00 31.51 1.82
962 983 1.593209 GCACGTGTTGAAGTCGGGA 60.593 57.895 18.38 0.00 0.00 5.14
991 1016 1.532868 GTGCGCACCCATTGATAGATC 59.467 52.381 30.12 0.00 0.00 2.75
1137 1169 2.561885 CCGTCGACGCTGAAGACT 59.438 61.111 31.73 0.00 38.18 3.24
1287 1319 1.404477 GCCAAATCGGTTGAAACACG 58.596 50.000 1.81 0.00 39.87 4.49
1365 1397 1.360551 CTCGCCGTAGTCCATGAGG 59.639 63.158 0.00 0.00 0.00 3.86
1386 1418 2.970974 GCTGAACACCGGCTTGCTC 61.971 63.158 0.00 0.00 43.80 4.26
1575 1607 4.866508 ACTCCTTTGACTTATCACGTGA 57.133 40.909 22.48 22.48 33.38 4.35
1698 1736 3.760693 CCACATGGTAGAAGTCCCG 57.239 57.895 0.00 0.00 0.00 5.14
1828 1866 2.624838 GGTCCCATGGCTAAATGTGATG 59.375 50.000 6.09 0.00 0.00 3.07
1835 1873 3.042682 TCTTATCGGTCCCATGGCTAAA 58.957 45.455 6.09 0.00 0.00 1.85
1840 1878 3.492102 ACAATCTTATCGGTCCCATGG 57.508 47.619 4.14 4.14 0.00 3.66
1893 1931 2.292828 AATATAGCGGCCCAGCAAAT 57.707 45.000 5.37 1.28 40.15 2.32
1898 1936 1.160137 GAGCAAATATAGCGGCCCAG 58.840 55.000 0.00 0.00 37.01 4.45
1974 2018 3.938334 ACCATTTGCTTGTTCAACAAACC 59.062 39.130 4.13 0.00 37.69 3.27
2033 2077 0.616371 TAGGGCATAGGCAAACACGT 59.384 50.000 0.15 0.00 43.71 4.49
2035 2079 2.092914 AGTCTAGGGCATAGGCAAACAC 60.093 50.000 13.74 0.00 43.71 3.32
2090 2134 2.567169 AGTCACCTCCAATGAACATCGA 59.433 45.455 0.00 0.00 0.00 3.59
2092 2136 6.817765 TTAAAGTCACCTCCAATGAACATC 57.182 37.500 0.00 0.00 0.00 3.06
2133 2177 5.238650 ACAGAAAAGGTCATCGGTACTTTTG 59.761 40.000 8.95 1.58 41.62 2.44
2144 2188 5.234466 AGCTAGTGAACAGAAAAGGTCAT 57.766 39.130 0.00 0.00 0.00 3.06
2153 2197 5.633601 CACGAACAATTAGCTAGTGAACAGA 59.366 40.000 12.17 0.00 0.00 3.41
2167 2211 2.482336 TCATTGCTACGCACGAACAATT 59.518 40.909 0.00 0.00 38.71 2.32
2168 2212 2.073056 TCATTGCTACGCACGAACAAT 58.927 42.857 0.00 0.91 38.71 2.71
2169 2213 1.503294 TCATTGCTACGCACGAACAA 58.497 45.000 0.00 0.00 38.71 2.83
2170 2214 1.393196 CATCATTGCTACGCACGAACA 59.607 47.619 0.00 0.00 38.71 3.18
2171 2215 1.267532 CCATCATTGCTACGCACGAAC 60.268 52.381 0.00 0.00 38.71 3.95
2172 2216 1.006086 CCATCATTGCTACGCACGAA 58.994 50.000 0.00 0.00 38.71 3.85
2173 2217 1.428370 GCCATCATTGCTACGCACGA 61.428 55.000 0.00 0.00 38.71 4.35
2174 2218 1.010797 GCCATCATTGCTACGCACG 60.011 57.895 0.00 0.00 38.71 5.34
2175 2219 0.664761 ATGCCATCATTGCTACGCAC 59.335 50.000 0.00 0.00 38.71 5.34
2176 2220 1.872952 GTATGCCATCATTGCTACGCA 59.127 47.619 0.00 0.00 36.47 5.24
2177 2221 1.872952 TGTATGCCATCATTGCTACGC 59.127 47.619 0.00 0.00 34.22 4.42
2178 2222 6.314648 AGAATATGTATGCCATCATTGCTACG 59.685 38.462 0.00 0.00 34.86 3.51
2179 2223 7.621428 AGAATATGTATGCCATCATTGCTAC 57.379 36.000 0.00 0.00 34.86 3.58
2180 2224 9.910267 AATAGAATATGTATGCCATCATTGCTA 57.090 29.630 0.00 0.00 34.86 3.49
2181 2225 8.683615 CAATAGAATATGTATGCCATCATTGCT 58.316 33.333 0.00 0.00 34.86 3.91
2182 2226 7.919091 CCAATAGAATATGTATGCCATCATTGC 59.081 37.037 0.00 0.00 34.86 3.56
2183 2227 8.963725 ACCAATAGAATATGTATGCCATCATTG 58.036 33.333 0.00 0.00 34.86 2.82
2184 2228 9.537852 AACCAATAGAATATGTATGCCATCATT 57.462 29.630 0.00 0.00 34.86 2.57
2185 2229 9.182214 GAACCAATAGAATATGTATGCCATCAT 57.818 33.333 0.00 0.00 34.86 2.45
2186 2230 8.162746 TGAACCAATAGAATATGTATGCCATCA 58.837 33.333 0.00 0.00 34.86 3.07
2187 2231 8.565896 TGAACCAATAGAATATGTATGCCATC 57.434 34.615 0.00 0.00 34.86 3.51
2188 2232 8.796475 GTTGAACCAATAGAATATGTATGCCAT 58.204 33.333 0.00 0.00 37.58 4.40
2189 2233 7.777440 TGTTGAACCAATAGAATATGTATGCCA 59.223 33.333 0.00 0.00 0.00 4.92
2190 2234 8.165239 TGTTGAACCAATAGAATATGTATGCC 57.835 34.615 0.00 0.00 0.00 4.40
2191 2235 9.669353 CTTGTTGAACCAATAGAATATGTATGC 57.331 33.333 0.00 0.00 0.00 3.14
2193 2237 8.850156 GCCTTGTTGAACCAATAGAATATGTAT 58.150 33.333 0.00 0.00 0.00 2.29
2194 2238 8.052748 AGCCTTGTTGAACCAATAGAATATGTA 58.947 33.333 0.00 0.00 0.00 2.29
2195 2239 6.891908 AGCCTTGTTGAACCAATAGAATATGT 59.108 34.615 0.00 0.00 0.00 2.29
2196 2240 7.067372 TGAGCCTTGTTGAACCAATAGAATATG 59.933 37.037 0.00 0.00 0.00 1.78
2197 2241 7.118723 TGAGCCTTGTTGAACCAATAGAATAT 58.881 34.615 0.00 0.00 0.00 1.28
2198 2242 6.480763 TGAGCCTTGTTGAACCAATAGAATA 58.519 36.000 0.00 0.00 0.00 1.75
2199 2243 5.324409 TGAGCCTTGTTGAACCAATAGAAT 58.676 37.500 0.00 0.00 0.00 2.40
2200 2244 4.724399 TGAGCCTTGTTGAACCAATAGAA 58.276 39.130 0.00 0.00 0.00 2.10
2201 2245 4.365514 TGAGCCTTGTTGAACCAATAGA 57.634 40.909 0.00 0.00 0.00 1.98
2202 2246 6.949352 ATATGAGCCTTGTTGAACCAATAG 57.051 37.500 0.00 0.00 0.00 1.73
2203 2247 6.405731 GCAATATGAGCCTTGTTGAACCAATA 60.406 38.462 0.00 0.00 0.00 1.90
2204 2248 5.625197 GCAATATGAGCCTTGTTGAACCAAT 60.625 40.000 0.00 0.00 0.00 3.16
2205 2249 4.321899 GCAATATGAGCCTTGTTGAACCAA 60.322 41.667 0.00 0.00 0.00 3.67
2206 2250 3.193267 GCAATATGAGCCTTGTTGAACCA 59.807 43.478 0.00 0.00 0.00 3.67
2207 2251 3.193267 TGCAATATGAGCCTTGTTGAACC 59.807 43.478 0.00 0.00 0.00 3.62
2208 2252 4.439305 TGCAATATGAGCCTTGTTGAAC 57.561 40.909 0.00 0.00 0.00 3.18
2209 2253 5.465532 TTTGCAATATGAGCCTTGTTGAA 57.534 34.783 0.00 0.00 0.00 2.69
2210 2254 4.618927 GCTTTGCAATATGAGCCTTGTTGA 60.619 41.667 9.29 0.00 0.00 3.18
2211 2255 3.615496 GCTTTGCAATATGAGCCTTGTTG 59.385 43.478 9.29 0.00 0.00 3.33
2212 2256 3.674138 CGCTTTGCAATATGAGCCTTGTT 60.674 43.478 13.76 0.00 0.00 2.83
2213 2257 2.159338 CGCTTTGCAATATGAGCCTTGT 60.159 45.455 13.76 0.00 0.00 3.16
2214 2258 2.456989 CGCTTTGCAATATGAGCCTTG 58.543 47.619 13.76 0.00 0.00 3.61
2215 2259 1.202336 GCGCTTTGCAATATGAGCCTT 60.202 47.619 13.76 0.00 45.45 4.35
2216 2260 0.383231 GCGCTTTGCAATATGAGCCT 59.617 50.000 13.76 0.00 45.45 4.58
2217 2261 2.877396 GCGCTTTGCAATATGAGCC 58.123 52.632 13.76 4.89 45.45 4.70
2227 2271 2.012948 GTTGTGCTCAGCGCTTTGC 61.013 57.895 20.56 20.56 46.98 3.68
2228 2272 0.931662 GTGTTGTGCTCAGCGCTTTG 60.932 55.000 7.50 4.28 40.03 2.77
2229 2273 1.356624 GTGTTGTGCTCAGCGCTTT 59.643 52.632 7.50 0.00 40.03 3.51
2230 2274 2.885676 CGTGTTGTGCTCAGCGCTT 61.886 57.895 7.50 0.00 40.03 4.68
2231 2275 3.341043 CGTGTTGTGCTCAGCGCT 61.341 61.111 12.40 2.64 40.03 5.92
2232 2276 2.881266 TTCGTGTTGTGCTCAGCGC 61.881 57.895 2.22 2.22 39.75 5.92
2233 2277 1.083401 GTTCGTGTTGTGCTCAGCG 60.083 57.895 0.00 1.52 0.00 5.18
2234 2278 1.160329 AGGTTCGTGTTGTGCTCAGC 61.160 55.000 0.00 0.00 0.00 4.26
2235 2279 2.148916 TAGGTTCGTGTTGTGCTCAG 57.851 50.000 0.00 0.00 0.00 3.35
2236 2280 2.605837 TTAGGTTCGTGTTGTGCTCA 57.394 45.000 0.00 0.00 0.00 4.26
2237 2281 2.032290 GGTTTAGGTTCGTGTTGTGCTC 60.032 50.000 0.00 0.00 0.00 4.26
2238 2282 1.944709 GGTTTAGGTTCGTGTTGTGCT 59.055 47.619 0.00 0.00 0.00 4.40
2239 2283 1.944709 AGGTTTAGGTTCGTGTTGTGC 59.055 47.619 0.00 0.00 0.00 4.57
2240 2284 3.790789 GCAAGGTTTAGGTTCGTGTTGTG 60.791 47.826 0.00 0.00 0.00 3.33
2241 2285 2.356695 GCAAGGTTTAGGTTCGTGTTGT 59.643 45.455 0.00 0.00 0.00 3.32
2242 2286 2.616842 AGCAAGGTTTAGGTTCGTGTTG 59.383 45.455 0.00 0.00 0.00 3.33
2243 2287 2.616842 CAGCAAGGTTTAGGTTCGTGTT 59.383 45.455 0.00 0.00 0.00 3.32
2244 2288 2.218603 CAGCAAGGTTTAGGTTCGTGT 58.781 47.619 0.00 0.00 0.00 4.49
2245 2289 1.069227 GCAGCAAGGTTTAGGTTCGTG 60.069 52.381 0.00 0.00 0.00 4.35
2246 2290 1.235724 GCAGCAAGGTTTAGGTTCGT 58.764 50.000 0.00 0.00 0.00 3.85
2247 2291 1.234821 TGCAGCAAGGTTTAGGTTCG 58.765 50.000 0.00 0.00 0.00 3.95
2248 2292 3.317993 TCTTTGCAGCAAGGTTTAGGTTC 59.682 43.478 16.28 0.00 0.00 3.62
2249 2293 3.295973 TCTTTGCAGCAAGGTTTAGGTT 58.704 40.909 16.28 0.00 0.00 3.50
2250 2294 2.944129 TCTTTGCAGCAAGGTTTAGGT 58.056 42.857 16.28 0.00 0.00 3.08
2251 2295 3.305608 CCTTCTTTGCAGCAAGGTTTAGG 60.306 47.826 16.28 15.98 33.24 2.69
2252 2296 3.305608 CCCTTCTTTGCAGCAAGGTTTAG 60.306 47.826 16.28 7.24 35.77 1.85
2253 2297 2.627699 CCCTTCTTTGCAGCAAGGTTTA 59.372 45.455 16.28 3.79 35.77 2.01
2254 2298 1.413812 CCCTTCTTTGCAGCAAGGTTT 59.586 47.619 16.28 0.00 35.77 3.27
2255 2299 1.043022 CCCTTCTTTGCAGCAAGGTT 58.957 50.000 16.28 0.00 35.77 3.50
2256 2300 0.829182 CCCCTTCTTTGCAGCAAGGT 60.829 55.000 16.28 0.00 35.77 3.50
2257 2301 0.540365 TCCCCTTCTTTGCAGCAAGG 60.540 55.000 11.01 11.01 37.09 3.61
2258 2302 0.600057 GTCCCCTTCTTTGCAGCAAG 59.400 55.000 8.12 3.23 0.00 4.01
2259 2303 0.185901 AGTCCCCTTCTTTGCAGCAA 59.814 50.000 2.83 2.83 0.00 3.91
2260 2304 0.185901 AAGTCCCCTTCTTTGCAGCA 59.814 50.000 0.00 0.00 0.00 4.41
2261 2305 0.600057 CAAGTCCCCTTCTTTGCAGC 59.400 55.000 0.00 0.00 0.00 5.25
2262 2306 2.276732 TCAAGTCCCCTTCTTTGCAG 57.723 50.000 0.00 0.00 0.00 4.41
2263 2307 2.174639 TCTTCAAGTCCCCTTCTTTGCA 59.825 45.455 0.00 0.00 0.00 4.08
2264 2308 2.863809 TCTTCAAGTCCCCTTCTTTGC 58.136 47.619 0.00 0.00 0.00 3.68
2265 2309 6.241645 ACTAATCTTCAAGTCCCCTTCTTTG 58.758 40.000 0.00 0.00 0.00 2.77
2266 2310 6.455690 ACTAATCTTCAAGTCCCCTTCTTT 57.544 37.500 0.00 0.00 0.00 2.52
2267 2311 6.455690 AACTAATCTTCAAGTCCCCTTCTT 57.544 37.500 0.00 0.00 0.00 2.52
2268 2312 6.183361 ACAAACTAATCTTCAAGTCCCCTTCT 60.183 38.462 0.00 0.00 0.00 2.85
2269 2313 6.004574 ACAAACTAATCTTCAAGTCCCCTTC 58.995 40.000 0.00 0.00 0.00 3.46
2270 2314 5.953571 ACAAACTAATCTTCAAGTCCCCTT 58.046 37.500 0.00 0.00 0.00 3.95
2271 2315 5.584551 ACAAACTAATCTTCAAGTCCCCT 57.415 39.130 0.00 0.00 0.00 4.79
2272 2316 6.473758 ACTACAAACTAATCTTCAAGTCCCC 58.526 40.000 0.00 0.00 0.00 4.81
2273 2317 7.159372 TGACTACAAACTAATCTTCAAGTCCC 58.841 38.462 0.00 0.00 31.92 4.46
2274 2318 8.779354 ATGACTACAAACTAATCTTCAAGTCC 57.221 34.615 0.00 0.00 31.92 3.85
2301 2345 3.320826 AGCCTTGTTGCCGAACTATTTTT 59.679 39.130 0.00 0.00 32.79 1.94
2302 2346 2.890945 AGCCTTGTTGCCGAACTATTTT 59.109 40.909 0.00 0.00 32.79 1.82
2303 2347 2.514803 AGCCTTGTTGCCGAACTATTT 58.485 42.857 0.00 0.00 32.79 1.40
2304 2348 2.200373 AGCCTTGTTGCCGAACTATT 57.800 45.000 0.00 0.00 32.79 1.73
2305 2349 1.812571 CAAGCCTTGTTGCCGAACTAT 59.187 47.619 0.00 0.00 32.79 2.12
2306 2350 1.234821 CAAGCCTTGTTGCCGAACTA 58.765 50.000 0.00 0.00 32.79 2.24
2307 2351 0.751643 ACAAGCCTTGTTGCCGAACT 60.752 50.000 3.74 0.00 42.22 3.01
2308 2352 0.948678 TACAAGCCTTGTTGCCGAAC 59.051 50.000 16.40 0.00 42.22 3.95
2309 2353 1.904287 ATACAAGCCTTGTTGCCGAA 58.096 45.000 16.40 0.00 42.22 4.30
2310 2354 1.539388 CAATACAAGCCTTGTTGCCGA 59.461 47.619 16.40 0.00 42.22 5.54
2311 2355 1.981254 CAATACAAGCCTTGTTGCCG 58.019 50.000 16.40 0.00 42.22 5.69
2312 2356 1.000731 TGCAATACAAGCCTTGTTGCC 59.999 47.619 24.18 11.87 43.36 4.52
2313 2357 2.437200 TGCAATACAAGCCTTGTTGC 57.563 45.000 21.71 21.71 43.95 4.17
2314 2358 3.184986 GCTTTGCAATACAAGCCTTGTTG 59.815 43.478 16.40 10.05 42.22 3.33
2315 2359 3.392882 GCTTTGCAATACAAGCCTTGTT 58.607 40.909 16.40 0.98 42.22 2.83
2316 2360 2.289010 GGCTTTGCAATACAAGCCTTGT 60.289 45.455 25.91 15.44 43.52 3.16
2317 2361 2.340337 GGCTTTGCAATACAAGCCTTG 58.660 47.619 25.91 2.11 43.52 3.61
2318 2362 2.749280 GGCTTTGCAATACAAGCCTT 57.251 45.000 25.91 0.00 43.52 4.35
2320 2364 1.545582 TCAGGCTTTGCAATACAAGCC 59.454 47.619 25.87 25.87 45.43 4.35
2321 2365 2.599659 GTCAGGCTTTGCAATACAAGC 58.400 47.619 11.60 11.60 40.06 4.01
2322 2366 2.855180 CGTCAGGCTTTGCAATACAAG 58.145 47.619 0.00 0.00 40.06 3.16
2323 2367 1.068610 GCGTCAGGCTTTGCAATACAA 60.069 47.619 0.00 0.00 39.11 2.41
2324 2368 0.521291 GCGTCAGGCTTTGCAATACA 59.479 50.000 0.00 0.00 39.11 2.29
2325 2369 0.521291 TGCGTCAGGCTTTGCAATAC 59.479 50.000 0.00 0.00 44.05 1.89
2326 2370 0.521291 GTGCGTCAGGCTTTGCAATA 59.479 50.000 0.00 0.00 44.05 1.90
2327 2371 1.286880 GTGCGTCAGGCTTTGCAAT 59.713 52.632 0.00 0.00 44.05 3.56
2328 2372 1.661498 TTGTGCGTCAGGCTTTGCAA 61.661 50.000 6.64 0.00 44.05 4.08
2329 2373 2.117779 TTGTGCGTCAGGCTTTGCA 61.118 52.632 1.29 1.29 44.05 4.08
2330 2374 1.658409 GTTGTGCGTCAGGCTTTGC 60.658 57.895 0.00 0.00 44.05 3.68
2331 2375 1.008538 GGTTGTGCGTCAGGCTTTG 60.009 57.895 0.00 0.00 44.05 2.77
2332 2376 2.193536 GGGTTGTGCGTCAGGCTTT 61.194 57.895 0.00 0.00 44.05 3.51
2333 2377 2.594592 GGGTTGTGCGTCAGGCTT 60.595 61.111 0.00 0.00 44.05 4.35
2334 2378 3.414136 TTGGGTTGTGCGTCAGGCT 62.414 57.895 0.00 0.00 44.05 4.58
2335 2379 2.904866 TTGGGTTGTGCGTCAGGC 60.905 61.111 0.00 0.00 43.96 4.85
2336 2380 2.551912 GGTTGGGTTGTGCGTCAGG 61.552 63.158 0.00 0.00 0.00 3.86
2337 2381 1.172180 ATGGTTGGGTTGTGCGTCAG 61.172 55.000 0.00 0.00 0.00 3.51
2338 2382 0.753479 AATGGTTGGGTTGTGCGTCA 60.753 50.000 0.00 0.00 0.00 4.35
2339 2383 0.318614 CAATGGTTGGGTTGTGCGTC 60.319 55.000 0.00 0.00 0.00 5.19
2340 2384 1.040339 ACAATGGTTGGGTTGTGCGT 61.040 50.000 0.00 0.00 37.19 5.24
2341 2385 0.103937 AACAATGGTTGGGTTGTGCG 59.896 50.000 0.00 0.00 38.47 5.34
2351 2395 3.037549 TCCCTTCTTTGCAACAATGGTT 58.962 40.909 0.00 0.00 37.87 3.67
2352 2396 2.676748 TCCCTTCTTTGCAACAATGGT 58.323 42.857 0.00 0.00 0.00 3.55
2353 2397 3.749665 TTCCCTTCTTTGCAACAATGG 57.250 42.857 0.00 1.94 0.00 3.16
2354 2398 5.049267 CCAAATTCCCTTCTTTGCAACAATG 60.049 40.000 0.00 0.00 32.29 2.82
2355 2399 5.065235 CCAAATTCCCTTCTTTGCAACAAT 58.935 37.500 0.00 0.00 32.29 2.71
2356 2400 4.450053 CCAAATTCCCTTCTTTGCAACAA 58.550 39.130 0.00 0.00 32.29 2.83
2357 2401 3.181456 CCCAAATTCCCTTCTTTGCAACA 60.181 43.478 0.00 0.00 32.29 3.33
2358 2402 3.402110 CCCAAATTCCCTTCTTTGCAAC 58.598 45.455 0.00 0.00 32.29 4.17
2359 2403 2.371510 CCCCAAATTCCCTTCTTTGCAA 59.628 45.455 0.00 0.00 32.29 4.08
2360 2404 1.977129 CCCCAAATTCCCTTCTTTGCA 59.023 47.619 0.00 0.00 32.29 4.08
2361 2405 2.256306 TCCCCAAATTCCCTTCTTTGC 58.744 47.619 0.00 0.00 32.29 3.68
2362 2406 5.503634 AAATCCCCAAATTCCCTTCTTTG 57.496 39.130 0.00 0.00 33.20 2.77
2363 2407 6.331032 ACTAAATCCCCAAATTCCCTTCTTT 58.669 36.000 0.00 0.00 0.00 2.52
2364 2408 5.915628 ACTAAATCCCCAAATTCCCTTCTT 58.084 37.500 0.00 0.00 0.00 2.52
2365 2409 5.552430 ACTAAATCCCCAAATTCCCTTCT 57.448 39.130 0.00 0.00 0.00 2.85
2366 2410 5.719563 TCAACTAAATCCCCAAATTCCCTTC 59.280 40.000 0.00 0.00 0.00 3.46
2367 2411 5.660533 TCAACTAAATCCCCAAATTCCCTT 58.339 37.500 0.00 0.00 0.00 3.95
2368 2412 5.283876 TCAACTAAATCCCCAAATTCCCT 57.716 39.130 0.00 0.00 0.00 4.20
2369 2413 5.425217 ACATCAACTAAATCCCCAAATTCCC 59.575 40.000 0.00 0.00 0.00 3.97
2370 2414 6.154363 TGACATCAACTAAATCCCCAAATTCC 59.846 38.462 0.00 0.00 0.00 3.01
2371 2415 7.035612 GTGACATCAACTAAATCCCCAAATTC 58.964 38.462 0.00 0.00 0.00 2.17
2372 2416 6.496565 TGTGACATCAACTAAATCCCCAAATT 59.503 34.615 0.00 0.00 0.00 1.82
2373 2417 6.015918 TGTGACATCAACTAAATCCCCAAAT 58.984 36.000 0.00 0.00 0.00 2.32
2374 2418 5.389520 TGTGACATCAACTAAATCCCCAAA 58.610 37.500 0.00 0.00 0.00 3.28
2375 2419 4.991776 TGTGACATCAACTAAATCCCCAA 58.008 39.130 0.00 0.00 0.00 4.12
2376 2420 4.042809 ACTGTGACATCAACTAAATCCCCA 59.957 41.667 0.00 0.00 0.00 4.96
2377 2421 4.589908 ACTGTGACATCAACTAAATCCCC 58.410 43.478 0.00 0.00 0.00 4.81
2378 2422 4.330074 CGACTGTGACATCAACTAAATCCC 59.670 45.833 0.00 0.00 0.00 3.85
2379 2423 4.929808 ACGACTGTGACATCAACTAAATCC 59.070 41.667 0.00 0.00 0.00 3.01
2380 2424 7.757097 ATACGACTGTGACATCAACTAAATC 57.243 36.000 0.00 0.00 0.00 2.17
2381 2425 9.647797 TTTATACGACTGTGACATCAACTAAAT 57.352 29.630 0.00 0.00 0.00 1.40
2382 2426 9.478768 TTTTATACGACTGTGACATCAACTAAA 57.521 29.630 0.00 0.00 0.00 1.85
2383 2427 9.478768 TTTTTATACGACTGTGACATCAACTAA 57.521 29.630 0.00 0.00 0.00 2.24
2385 2429 7.956420 TTTTTATACGACTGTGACATCAACT 57.044 32.000 0.00 0.00 0.00 3.16
2406 2450 6.677913 CAATCCTCGTGGAACAGTTATTTTT 58.322 36.000 10.77 0.00 46.80 1.94
2407 2451 5.335661 GCAATCCTCGTGGAACAGTTATTTT 60.336 40.000 10.77 0.00 46.80 1.82
2408 2452 4.156008 GCAATCCTCGTGGAACAGTTATTT 59.844 41.667 10.77 0.00 46.80 1.40
2409 2453 3.689649 GCAATCCTCGTGGAACAGTTATT 59.310 43.478 10.77 0.00 46.80 1.40
2410 2454 3.270877 GCAATCCTCGTGGAACAGTTAT 58.729 45.455 10.77 0.00 46.80 1.89
2411 2455 2.037902 TGCAATCCTCGTGGAACAGTTA 59.962 45.455 10.77 0.00 46.80 2.24
2412 2456 1.202758 TGCAATCCTCGTGGAACAGTT 60.203 47.619 10.77 0.00 46.80 3.16
2413 2457 0.396435 TGCAATCCTCGTGGAACAGT 59.604 50.000 10.77 0.00 46.80 3.55
2414 2458 1.197721 GTTGCAATCCTCGTGGAACAG 59.802 52.381 10.77 4.73 46.80 3.16
2415 2459 1.234821 GTTGCAATCCTCGTGGAACA 58.765 50.000 10.77 6.72 46.80 3.18
2416 2460 1.234821 TGTTGCAATCCTCGTGGAAC 58.765 50.000 10.77 5.38 46.80 3.62
2417 2461 1.879380 CTTGTTGCAATCCTCGTGGAA 59.121 47.619 10.77 0.00 46.80 3.53
2419 2463 0.523072 CCTTGTTGCAATCCTCGTGG 59.477 55.000 0.59 0.00 0.00 4.94
2420 2464 0.109597 GCCTTGTTGCAATCCTCGTG 60.110 55.000 0.59 0.00 0.00 4.35
2421 2465 0.250901 AGCCTTGTTGCAATCCTCGT 60.251 50.000 0.59 0.00 0.00 4.18
2422 2466 0.883833 AAGCCTTGTTGCAATCCTCG 59.116 50.000 0.59 0.00 0.00 4.63
2423 2467 1.615392 ACAAGCCTTGTTGCAATCCTC 59.385 47.619 3.74 0.00 42.22 3.71
2424 2468 1.342174 CACAAGCCTTGTTGCAATCCT 59.658 47.619 7.51 0.00 43.23 3.24
2425 2469 1.069049 ACACAAGCCTTGTTGCAATCC 59.931 47.619 7.51 0.00 43.23 3.01
2426 2470 2.514205 ACACAAGCCTTGTTGCAATC 57.486 45.000 7.51 0.00 43.23 2.67
2427 2471 2.553086 CAACACAAGCCTTGTTGCAAT 58.447 42.857 7.51 0.00 45.36 3.56
2428 2472 2.007360 CAACACAAGCCTTGTTGCAA 57.993 45.000 7.51 0.00 45.36 4.08
2429 2473 3.737127 CAACACAAGCCTTGTTGCA 57.263 47.368 7.51 0.00 45.36 4.08
2442 2486 3.701454 GCGCTTAGCTCTTGGCAACAC 62.701 57.143 0.00 0.00 46.21 3.32
2443 2487 1.577328 GCGCTTAGCTCTTGGCAACA 61.577 55.000 0.00 0.00 45.22 3.33
2444 2488 1.135523 GCGCTTAGCTCTTGGCAAC 59.864 57.895 0.00 0.00 44.79 4.17
2445 2489 3.578456 GCGCTTAGCTCTTGGCAA 58.422 55.556 0.00 0.00 44.79 4.52
2454 2498 1.136502 GCGATCTATGTTGCGCTTAGC 60.137 52.381 9.73 0.00 45.41 3.09
2455 2499 2.844811 GCGATCTATGTTGCGCTTAG 57.155 50.000 9.73 4.98 45.41 2.18
2460 2504 0.514255 CCATGGCGATCTATGTTGCG 59.486 55.000 0.00 0.00 0.00 4.85
2461 2505 0.877071 CCCATGGCGATCTATGTTGC 59.123 55.000 6.09 0.00 0.00 4.17
2462 2506 1.072173 TCCCCATGGCGATCTATGTTG 59.928 52.381 6.09 0.00 0.00 3.33
2463 2507 1.434188 TCCCCATGGCGATCTATGTT 58.566 50.000 6.09 0.00 0.00 2.71
2464 2508 1.434188 TTCCCCATGGCGATCTATGT 58.566 50.000 6.09 0.00 0.00 2.29
2465 2509 2.566833 TTTCCCCATGGCGATCTATG 57.433 50.000 6.09 0.00 0.00 2.23
2466 2510 3.117512 ACTTTTTCCCCATGGCGATCTAT 60.118 43.478 6.09 0.00 0.00 1.98
2467 2511 2.241176 ACTTTTTCCCCATGGCGATCTA 59.759 45.455 6.09 0.00 0.00 1.98
2468 2512 1.005924 ACTTTTTCCCCATGGCGATCT 59.994 47.619 6.09 0.00 0.00 2.75
2469 2513 1.474330 ACTTTTTCCCCATGGCGATC 58.526 50.000 6.09 0.00 0.00 3.69
2470 2514 2.818751 TACTTTTTCCCCATGGCGAT 57.181 45.000 6.09 0.00 0.00 4.58
2471 2515 2.757868 CAATACTTTTTCCCCATGGCGA 59.242 45.455 6.09 0.00 0.00 5.54
2472 2516 2.159114 CCAATACTTTTTCCCCATGGCG 60.159 50.000 6.09 0.00 0.00 5.69
2473 2517 2.837591 ACCAATACTTTTTCCCCATGGC 59.162 45.455 6.09 0.00 0.00 4.40
2474 2518 4.081697 GTCACCAATACTTTTTCCCCATGG 60.082 45.833 4.14 4.14 0.00 3.66
2475 2519 4.081697 GGTCACCAATACTTTTTCCCCATG 60.082 45.833 0.00 0.00 0.00 3.66
2476 2520 4.093743 GGTCACCAATACTTTTTCCCCAT 58.906 43.478 0.00 0.00 0.00 4.00
2477 2521 3.141272 AGGTCACCAATACTTTTTCCCCA 59.859 43.478 0.00 0.00 0.00 4.96
2478 2522 3.774734 AGGTCACCAATACTTTTTCCCC 58.225 45.455 0.00 0.00 0.00 4.81
2479 2523 5.279306 GGAAAGGTCACCAATACTTTTTCCC 60.279 44.000 9.45 0.00 36.11 3.97
2480 2524 5.538813 AGGAAAGGTCACCAATACTTTTTCC 59.461 40.000 11.83 11.83 38.89 3.13
2481 2525 6.447162 CAGGAAAGGTCACCAATACTTTTTC 58.553 40.000 0.00 0.00 33.66 2.29
2482 2526 5.221441 GCAGGAAAGGTCACCAATACTTTTT 60.221 40.000 0.00 0.00 33.66 1.94
2483 2527 4.280929 GCAGGAAAGGTCACCAATACTTTT 59.719 41.667 0.00 0.00 33.66 2.27
2484 2528 3.826729 GCAGGAAAGGTCACCAATACTTT 59.173 43.478 0.00 0.00 35.99 2.66
2485 2529 3.421844 GCAGGAAAGGTCACCAATACTT 58.578 45.455 0.00 0.00 0.00 2.24
2486 2530 2.290960 GGCAGGAAAGGTCACCAATACT 60.291 50.000 0.00 0.00 0.00 2.12
2487 2531 2.092323 GGCAGGAAAGGTCACCAATAC 58.908 52.381 0.00 0.00 0.00 1.89
2488 2532 1.005450 GGGCAGGAAAGGTCACCAATA 59.995 52.381 0.00 0.00 0.00 1.90
2489 2533 0.251787 GGGCAGGAAAGGTCACCAAT 60.252 55.000 0.00 0.00 0.00 3.16
2490 2534 1.152830 GGGCAGGAAAGGTCACCAA 59.847 57.895 0.00 0.00 0.00 3.67
2491 2535 2.081787 TGGGCAGGAAAGGTCACCA 61.082 57.895 0.00 0.00 0.00 4.17
2492 2536 1.603739 GTGGGCAGGAAAGGTCACC 60.604 63.158 0.00 0.00 0.00 4.02
2493 2537 0.690762 TAGTGGGCAGGAAAGGTCAC 59.309 55.000 0.00 0.00 0.00 3.67
2494 2538 0.984230 CTAGTGGGCAGGAAAGGTCA 59.016 55.000 0.00 0.00 0.00 4.02
2495 2539 0.393132 GCTAGTGGGCAGGAAAGGTC 60.393 60.000 0.00 0.00 0.00 3.85
2496 2540 0.842467 AGCTAGTGGGCAGGAAAGGT 60.842 55.000 0.00 0.00 34.17 3.50
2497 2541 1.204146 TAGCTAGTGGGCAGGAAAGG 58.796 55.000 0.00 0.00 34.17 3.11
2498 2542 3.567478 ATTAGCTAGTGGGCAGGAAAG 57.433 47.619 0.00 0.00 34.17 2.62
2499 2543 3.620488 CAATTAGCTAGTGGGCAGGAAA 58.380 45.455 0.00 0.00 34.17 3.13
2500 2544 2.683742 GCAATTAGCTAGTGGGCAGGAA 60.684 50.000 7.89 0.00 41.15 3.36
2501 2545 1.134098 GCAATTAGCTAGTGGGCAGGA 60.134 52.381 7.89 0.00 41.15 3.86
2502 2546 1.312815 GCAATTAGCTAGTGGGCAGG 58.687 55.000 7.89 0.00 41.15 4.85
2513 2557 0.179163 GCAACCCACGAGCAATTAGC 60.179 55.000 0.00 0.00 46.19 3.09
2514 2558 1.164411 TGCAACCCACGAGCAATTAG 58.836 50.000 0.00 0.00 34.97 1.73
2515 2559 1.610363 TTGCAACCCACGAGCAATTA 58.390 45.000 0.00 0.00 42.71 1.40
2527 2571 7.879070 AGAATATGTATGTCATCATTGCAACC 58.121 34.615 0.00 0.00 37.91 3.77
2578 4048 7.979444 AATACGATGGGTGTAAGATTTATGG 57.021 36.000 0.00 0.00 0.00 2.74
2608 4078 9.143631 GTCAAATCAATTCAAATCTTACCAAGG 57.856 33.333 0.00 0.00 0.00 3.61
2634 4104 1.549170 AGTTGCCTTCCCTACACGTAG 59.451 52.381 0.00 0.00 0.00 3.51
2653 4124 6.405278 AAACCACCTCACCTAAATCAAAAG 57.595 37.500 0.00 0.00 0.00 2.27
2684 4155 9.701098 CCCATATCAAATCAAATCGAATCAAAT 57.299 29.630 0.00 0.00 0.00 2.32
2685 4156 8.694540 ACCCATATCAAATCAAATCGAATCAAA 58.305 29.630 0.00 0.00 0.00 2.69
2686 4157 8.236585 ACCCATATCAAATCAAATCGAATCAA 57.763 30.769 0.00 0.00 0.00 2.57
2687 4158 7.822161 ACCCATATCAAATCAAATCGAATCA 57.178 32.000 0.00 0.00 0.00 2.57
2692 4163 7.161404 TCTCCTACCCATATCAAATCAAATCG 58.839 38.462 0.00 0.00 0.00 3.34
2704 4175 5.157770 TCCTTGTCTTCTCCTACCCATAT 57.842 43.478 0.00 0.00 0.00 1.78
2738 4209 3.691575 TGGCATTCGAATCCAAAACCTA 58.308 40.909 20.22 3.09 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.