>input_sequence_68398
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-----------------------------------------------------------------------ATGGGTGCG
CACACGCTTCTCACCCCGGTTGTCAGCAAGATCTTCTGCAGCTCCCTGCAGGCCGTGCTCCTGGTCCGCCGCCGTCCCCC
CGCCGTCACCGGAGGCGGCTTCGTCGTCACCGACCGCGAGCAGAGGGTAGTCTTCAGCGTCGACGGCTGCGGGATCATCG
GCGCCAGCGGGCAGCTCGTCGTCAGGGACGGCGACGGCACCGCCATCCTCTTCATCCACAAGAAGGTGAGTTACCGAGTT
CGTAGGTCGAGCTCGAGCTAGTCCATGTGCCATCTCTGCGTGTTTCAACCGATTTGGCCGGTGTCACAGGGAGGAGTCGT
CCAAGCGCTGAGCGTTCACAACCGGTGGAAAGGGTACCTCATGGACTACGGCGAGCCGAGCAAGCCGGTGTTCAGCTTGC
AGGACCCGAAGCCGGTGCTCAGCTGCGCGGCGGGCGACGTCCGGGTCACCGTCGAACCCAAGGGGAGGAAGCGGCACTGG
GACTACGAGGTCACGGGATCCTTCGCCCACAGGGCTTGCGCCGTCAAGAGCCGCACAGGCCACGTCGTAGCACAGGTAAA
GTTCTATCACGTGATAAGTCAAAGGAGTTGAGTCATGAGTTCAGTTCAACTCAATTACTGTACAAATTATGAGTTTTGAT
TTTC------TAATAACGTGTGAACTAGATTGGAGTGAAGGGGATGATGGCCGGCCGGGACTTCTACCATGTGGTGGTGC
AGCCGGGCTATGACCAGGCCTTTGTGATTGGCGTAATTGCCATCCTCGACAACATGAATGGGGAATCCACAAGGTGTTAA
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>chr4A_1_TraesCS4A01G009500
AGAGGTGGAGTCTGCCAGAAAGCCAATTGTGAAGCCACCATCCAGTACCGCTGCCCCGGCATCC-----CCTAGGCATCA
CCGATCATCCACGTCACGACCAGGCAACAACGGTAGGAGGAGTGAAAGGCGCCTCCTTGCCTTTCTCTGTGTACTCTTTA
CTTGTGCTACCTGCCTAGAGAGTAACTTATATGGAATTTTGCTCGCC--CCATGATTAATGCTCTGTGCTTGACGACGGA
AACGAAATAAAATCAGAACACTCACCGGGCAATGATAA-GCTGGGTTATCTTTCTTACTTTCTCACTTCCATGTTCCAA-
CATGCATG--TGCATGCATGCATTCTTTTCTCGGCAAGGAGGCGGTAAGCGTTGTCATATAGGATCCGGCTTGCTTGCTC
CCTCTTCATGCTCTCATCCGTGTTTCCACTTCATCGTACGACTGTCTTTTTTATTTTTTTTCTTTCTAATCTAATCAGTA
ATCATCTCCCCTCCTGATTTTAAAGGGGTGGGATCGGACCTTATTTTATTTCAATTAAATCAAGCCACATATGCGAGAGC
ATAGATGGACACACGCGCGGGAAGCCGTATACGGGTATTCATAAAGTTTAACACGTTTGGGCGCGTGATTAGGCCCGCAA
TTAGGTATAATCCTTGTGTTTAGCTGGACGTAAACACCTCAAAAAGGCAAAGGCATAAACACAAAGCTGCAATTTGGTGG
CCGGAAGCAAAGGAATTCAAAGATTCTTCCGGCGATCAATCCA--------TCTCCTGTGGTCCTGCGTATATATACTAG
CTAGCTAGGCTTTGTCACGCATTGCTTCGGCCGCTAAGCTTCGTGGAATCGCGTGGTTCGCGATAATCACGTACGTACAG
CGCCGATCGATTAGGCAGGTGGGTAGCCAGACGCGACATGAGGAGTCATGGGACACTTCCACACTCAAAATCGCTCTATT
TATTCCCTCC-TTGATGCATTGTCCCGACTTCAACACGTGCGCAGGC----TATCGATCTATCA-------ATGGGTGCG
CACACGCTTCTCACCCCGGTTGTCAGCAAGATCTTCTGCAGCTCCCTGCAGGCCGTGCTCCTGGTCCGCCGCCGTCCCCC
CGCCGTCACCGGAGGCGGCTTCGTCGTCACCGACCGCGAGCAGAGGGTAGTCTTCAGCGTCGACGGCTGCGGGATCATCG
GCGCCAGCGGGCAGCTCGTCGTCAGGGACGGCGACGGCACCGCCATCCTCTTCATCCACAAGAAGGTGAGTTACCGAGTT
CGTAGGTCGAGCTCGAGCTAGTCCATGTGCCATCTCTGCGTGTTTCAACCGATTTGGCCGGTGTCACAGGGAGGAGTCGT
CCAAGCGCTGAGCGTTCACAACCGGTGGAAAGGGTACCTCATGGACTACGGCGAGCCGAGCAAGCCGGTGTTCAGCTTGC
AGGACCCGAAGCCGGTGCTCAGCTGCGCGGCGGGCGACGTCCGGGTCACCGTCGAACCCAAGGGGAGGAAGCGGCACTGG
GACTACGAGGTCACGGGATCCTTCGCCCACAGGGCTTGCGCCGTCAAGAGCCGCACAGGCCACGTCGTAGCACAGGTAAA
GTTCTATCACGTGATAAGTCAAAGGAGTTGAGTCATGAGTTCAGTTCAACTCAATTACTGTACAAATTATGAGTTTTGAT
TTTC------TAATAACGTGTGAACTAGATTGGAGTGAAGGGGATGATGGCCGGCCGGGACTTCTACCATGTGGTGGTGC
AGCCGGGCTATGACCAGGCCTTTGTGATTGGCGTAATTGCCATCCTCGACAACATGAATGGGGAATCCACAAGGTGTTAA
TGCTACAAAGTGGGAGCAATGAGCTCATCACATTTAGCCATGGGACCGATAAGATTGTATTGCCAATTTGTTTAATTATC
TTGATTGATTATTTGCTGGGCCGC------TATATTTGCTCCTTCTCAATGGTAGTCTGGAGGTGAAATTACTGTAAATT
GGTGTAAATTAAGGTTGGGTTTGTTGAACAAGCAAATGGTATGTGTATAGTGTTGCGTATCTTGCGAACACGCTCCACGT
GTTTGCCTATGCCCTAGACTGAGTTGGCTGGGGTTTGCTGCCATGATCCTGCCTCGATGTTCATTGGAGGTGACTTTAAT
ACTGTCCGCCATGGGGCAAAAGTACCGATGACCTTTTCTGTTCACTAGCTAATTGTTCGTGCGTAGCAATGATGGCATAC
ATATTCTATTGGTTCAACAAGGCTCATATTGCAAAGCGCTGAGCACAACACGAACCTAAACCTTGCTGCAAAGAAGGGGA
CTTGAAGATTAGTTTGTAGTCATAAAAAATAGTTCGGCAACAAGGCTTGTATTGCAAAGCCTGACGCACAACCCAACCAT
TGTTGCAAAGAAGGGAATTTGGGGATTTAGTTGATGTCACAGTCGTATAAAAAATAACTGTTCCACGAGGATTGCAACAA
GGCTTGTGTTGCCAAGAGCTAAGCGCAACATAGATCGCCATGGGGAAAAAGTATTGGTGACCTTTCCTGCCCACTAGCTA
ATTGCTCGTGGGTTGCAATGATGACATACATATTCTATTGGTTCAAC---------------------------------
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---------------------------------ATAAATCATGTCCGCCATAAATCTTACACCCATCGTATTACATACCT
TGGTAAGATTTGAATTGATTTGACTACGTGTA-GGGAAGGCAACTTTTGATTTAGGTGAGGTGGTTTTAATAAGATTTGA
TTCGATTTGATTTGATATGGGTAGGAGAAGACAAGGAAAGTTTTAGCCTAGGTTTTGGATTCGAATGCCAGCAACCCATT
TTTTTCCTGTCATGATCTTTTTCATTTTGCAAT
>chr4D_1
AGAGGTGGAGCCTGCCGGAAAGCCAATCGTGAAGCCACCATCCAGGACCGCGGCCCCGGCATCCGAGCCCCTAGGCATCG
CCGACCATCCACGTCACGATCACCCAACAACGATAGGAGGAGTGAAGGGCACCTCCTTGCCTTTCTCTGTGTACTCTTTA
CTTGTGCAACCTGCC--GAGCGTAAATTAGATGGAATATTTGCTCGTGTCCATGATTAACGCCTTTTGCTTGACGACGGA
AACGAAATAATATCTGAACACTCACCGGGCAATGATAAAGTTCGGTTATCTTTCTTACTTCCTCCCCTCCCTGTTCCATG
CATGCATG--T--ATGCATGCATTCTTTTCTCGGAAAGGAGGCGGTAAGCGTT---------------------------
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-----------------------GCCGTATACGGGTATTCAT-AAGTTTAACACGTTTAGGCGCGTGATTAGGCCCGCAA
TTAGGCATAATCCTTATGTGTAGCTGGACGTAAACTCCTCAAAAAGGCAAAGGCATAAACACAAGGCTGCAATTTGGTGG
CCGGAAGCAAAGGAATTCAAAGATTCTTCCGGCGATCAATCCA--------TCTCCTGTGGTCCTGCTTATATATACTAG
CTAG----GCTTTGTCACGCATTGCTTCGGCCGCTAAGCTTCGTGGAATCGCGTGGTCGACGATAATCACGTACGTACAG
CGCCGATCGATTAGGCAGGTGGGTAGCCAGACGCGACATGAGGAGTCATGGGACACTTCCACACTC-AAATCGCTCTATT
TATTCCCTCCATTGATGCATTGCCCCGACTTCAACACGTGCGCAGGCAGGCTATCTATCTATCCTTGGATCATGGGTGCG
CACACGCTTCTCACCCCGGTTGTCAGCAAGATCTTCTGCAGCTCCCTGCAGGCCGTGCTCCTGGTCCGCCGCCGTCCCCC
CGCCGTCACCGGAGGCGGCTTCGTCGTCACCGACCGCGAGCAGAGGGTCGTCTTCAGCGTGGACGGCTGCGGCATTATCG
GCGCCACCGGGCAGCTCGTCGTCAGGGACGGCGACGGCACCGCGATCCTCTTCATCCACAAGAAGGTGAGTTACCGACTT
CGTAGATCGAGCTCGAGCTAGTCC-TGTGCCATCTCTGAGTGTTTCAACCGATTTGGCCGGTGTCACAGGGAGGAGTCGT
CCAAGCGCTGAGCGTTCACAACCGGTGGAAAGGGTATCTCATGGACTACGGCGAGCCCAGCAAGCCGGTGTTCAGCTTGC
AGGACCCGAAGCCGGTGCTCAGCTGCGCGGCGGGCGACGTCAGGGTCACCGTCGAACCCAAGGGGAGGAAGCGGCACTGG
GACTACGAGGTCACGGGATCCTTCGCCCACAGGGCTTGCGCCGTCAAGAGCCGCACAGGCCACGTCGTAGCACAGGTAAG
GTTCTACCACGTGATAAGTCAAAGGAGTTGAGTCACGAGTTCAGTTCGATTCAAT-----TACAAATTATGAGTTTTGAT
TTTCTGTTTCTAATAACGTGTGAACTAGATTGGAGTGAAGGGGATGATGGCCGGCAGGGACTTCTACCATGTGGTGGTGC
AGCCGGGCTATGACCAGGCCTTTGTGATTGGCGTGATTGCCATTCTCGACAACATGAACGGGGAATCCACGAGGTGTTAA
TGCTACAAAGTGGGAGCAATGAGCTGATCACACTTAGTCATGGGACCGATAAGATTGTGTTGGCAATTTGTTTAATTATC
TTGATTGATTGTTTGTTGGGTCACTTCCAGTATATTTGCTCATTCTCAATGATAGCCTGGAGGTGAAATTACTGTAAATT
----------AAGGTTGAGTTTGTTGAACAAGCAAATGGTATGTGTATAGCGTTGCATATCCTGCGAACACGCTCCTCAT
GTTTGCCTATG-CCTAGACTGAGTTGGCTGGGGTTTGCTGCCATGATCCTGCCCCAATGTTCGTTGGAGGTGACTTTAAT
ACTGTCCGCCATGGGGAAAAAGTACCGGTGACCTTTCCTGTTCACTAGCT------------------------------
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-------------------------------------------------------------------------------A
ATTGCTCGTGCGTTGCAATGATGACATACATATTCTATTACTTCAAC---------------------------------
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---------------------------------ATAAATCATATCCGACATAAATCTTACACCCATCTTATTACATATCT
TGGTAAGATTTGAATTGATTTGAGTATGTGTAGGGGAAGACAATTTTTGATTTAGGTGAGGTGGTTTTGATAA-----GA
TTTGATTTGATTTGGTATGGGTAGGAGAAGACAAGGAAAGTTTTAGCCCAGGTTTTGGATTTGAATCCCA--AACCTA-T
TTTTTCCTGACATGTTCCTTTTCATTTTGCAAT
>chr4B_12
-----------CTGCCGGAAAGCCAA-TGTGAAGCCACCATCCTGGACCGCTGCCTGGGCATCCAACCCCCTAGGCATCA
CCGACCATCCACGTCACGACCACGCAACAACGGTAGGAGGAGTGAAAGGCACCTCCTTGCCTTTCTCTGTGTACTCTTTA
CTTGTGCAACCTGCC--GAGCGTAAATTAGATGGAATTTTTGCTCGTGTCCATGATTAACGCCTTTTGCTTGACGACGGA
AATGAAGTAATATCTGAACACTCACCGGACAATGATAAAGCTCGGTTATCTTTCTTCCTTCCTCCCCTCCCTGTTCCATG
CATGCATGCTTGCATGCAGGCATTCTTTTCTCGGAAAGGAGGCAGTAAGCGTT---------------------------
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-----------------------GCCGTATACGGGTATTCAAAAAGTTTAACACGTTTAGGCGCGTGATTAGGCCTGCAA
TTAGGCACAATCCTTATGTTTAGCTGGACGTAAACTCCTCGAAAAGGCAAAGGCATAAACACAAAGCTGCAATTTGGTGG
CCGGAAGCAATGCAATTCAAAGATTCTTCTGCCGATCAATCCATCTCATATTCTCCTGTGGTCCTGCGTATATATACTAG
CTAG----GCTTTGTCACGCATTGCTTCGGCCGCTAAGCTTCGTCGAATCGCGTGGTTCACGATAATCACGTACGTACAG
CGCCGATCGATTAGGCAGGTGGGTAGCCAGACGCGACATGAGGAGTCATGGGACACTTCCACACTC-AAATCGCTCTATT
TATTCCCTCCATTGATGCATTGCCCCGACTTCAACACGTGCGCAGGCAGGCTATCTATC----CTTGGATCATGGGTGCG
CACACGCTTCTCACTCCGGTTGTCAGCAAGATCTTCTGCAGCTCCCTGCAGGCCGTGCTCCTGGTCCGTCGCCGTCCCCC
CGCCGTGACCGGAGGCGGCTTGGTCGTCACCGACCGCGAGCAGAGGGTCGTCTTCAGCGTCGACGGCTGCGGCATCATTG
GCGCCAGCGGGCAGCTCGTCGTCAGGGACGGCGACGGCACGGCCATCCTCTTCATCCACAAGAAGGTGAGTTACCGACTT
CGTAGATCGAGCTCGAGCTAGTCCATGTGCCATCTCTGAGTGTTTCAACTGACTTGGCCGGTGTCACAGGGAGGAGTCGT
CCAAGCGCTGAGCGTTCACAACCGGTGGAAAGGGTATCTCATGGACTACGGCGAGCCCAGCAAGCTGGTGTTCAGCTTAC
AGGAACCGAAGACGGTGCTCAGCTGCGCGGCGGGCGACGTCCGGGTCACCGTCGAACCCAAGGGGAGGAAGCGGCACTGG
GACTACGAGGTCACGGGATCCTTCGCCCACAGGGCTTGCGCCGTCAGGAGCCGCACAGGCCACGTCGTAGCACAGGTAAA
GTTCTACCAGCTGATAAGTCAAAGGAGTTGAGTCATGAGTTCAGTTCAATTCAAT-----TACAAATTATGAGTTTTGAT
TTCT------TAATAACGTGTGAACTAGATTGGAGTGAAGGGGATGATGGCTGGCAGGGACTTCTACCATGTGGTGGTGC
AGCCGGGCTATGACCAGGCCTTTGTGATTGGCGTAATTGCCATCCTCGACAACATGAATGGGGAATCCACAAGGTGTTAA
TGCTACAAAGTGGGAGCAATGAGCTGATCACACTTAGTCATGGGACCGATAAGATTGTGTTGCCAATTTGTTTAATTATC
TTGATTGATTGATTGTTGGGCCGC------TATATTTGCTCCGTCTCAATGGTAGTCTGGAGGTGAAAGTACTGTAAATT
GGTGTAAATTAAGGTTGAGTTTGTTGAACAAGCAAATGGTATGTGTATAGTGTTGCATATCTTGCGAACATGCTCCTCAT
GTTTGCCTATGCCCTAGAATGAGTTGGCTGG-GTTTGCTGCCACGGTCCCGCCCCAATGTTCATTGGAGGTGACTTTAAT
ACTGTCCATCATGGAGA-AAAGTACCGGTGACCTTTCCTGTTCACTAGCT------------------------------
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-------------------------------------------------------------------------------A
ATTGCTCGTGCGTTGCAATGATGACATACATATTCTATTGCTTCAACCCCTATACAGTGTGATAACTTGGACCTGACGGA
CATCCTTAATTCCTTCCCACCGCAGCGTTCCACCTTCCCGATGAAGTACCTCGGATTACCTTTGTCGGTAAGGCGTCTCA
AGAGAATACGCTTCCAACCCCTTGAGGACAAGATTGGGGCTCAGCTTACACCTTGGACCAGGCAGGACGGTCCTAGTCAA
GTCGGTCATTACGGCAATCACCATTTACTACATGGCGGCTCTAAACCTCCCGGTTGAAGTTACAAAGAAGATTGATGCAC
TCCGGCGGGCCTTTCTTTGGGCTGGACATGACAAGGTCATGGGTGGCAAATGTAGATAAACTGGGAGCAGGTGTGTAGGT
CCAAGCTGCTTGGTGGGCTAGGTGTTCTAAATCTTGCAAAATTTGCCTCTGCGTTACAGCTGCGTAGGTTGTGGTTCAAA
TGGATAGACTCGGCCAAGCCTTGGGTAGGCTTGGGAACCCATGTGACTCGAACGACCGAAATATATTTGCTGCGGCAACC
AAGGTGGTGGTGGGTAATGGACTCCGGGCATCCTTCTGGGGTCGGCTTAGCTTGATGGCTTGAGGCCTAAAGATATGGGG
CCCAAAATTTACAACATTGCCAAAAGGAGGAAGTGCTATGTCCAAAAGGCTTTGCAGAATAGTTTCTGGATCTCACAGCT
GGACATTTCTTCGGGTATCTCACCTGTACACATATCCCAGTTTGTTGCCCTCTGGGAAAGGCTTTTCCACATTCATCTCA
ACCCTGATGTGGAGGATTCTATCTCATGGAAGTTTTCTAAAGATGGTCAATACTCTGCAGCCACGGCTTACAGTGCTCAA
TTCCTAGGTCTGATGGTTACGTACATGAATCAGATTGTTTGGAAGAATTGGGCACCCCCCAAATGCATATTCTTCGCTTG
GTTGGTAATCAACAACATAATTCGGAGGGCTGATAGACCGCAACGTCGTGGATGGCCCAACTGCCACTTATGCAAACAAG
TGCAGGAATCAGCGGCCCACCTCATTTTCCAATGCAGGTACACCGTCAGGGTCTGGGGCATGCTCAAGAGTTGTCTTGGG
CTACATGATGTCCAACCAACGAATTGGGTGGCAATGGAGTCAGTTGAGGTTTGGTGGAGACATAATGCTACACATATGAC
CCAATTGCGTCCACCACTTATCTCTTTGATGTTGCTGGTCTCTTGGGAAATTTGGAAGGAACGAAACACCCGGGTTTTTC
GTAACACCGTAGTTACGGTGGGAGTGTTGGTCACCAAGATAAAGGATGAATATTCACTTTGGAGCCTGGCGGGGCAAAGC
ATTTGCGTAATATAATGTCACGAGAGTACTGTCTTGTAATCTGGTCTTGGGCCACGAACTATATACTCCCTTCTTAATCA
ATGAAAATGGCAAACCTTTTGCCTAGTTTCAAAATAAATCATGTCCAACATAAATCTTACACCCATCTTATTACATATCT
TGTTAAGATTTGAATTAATTTGAGTACGTGTACGGAAAGGCAATTTTTGATTTAGGTGAGGTGCTTTTGATAA-----GA
TTTGATTTGATTTGGTATGGGTAGGAGAAGACAAGGAAAGTTTTAGCCCAGGTTTTGGATTCGAATCCCA--AACCTATT
TTTTTCCTGACATGTTCCTTTTCATTTTGCAAT
>SNPs
----------S-----S----------------------------S----------------------------------
----S-----------------S---------------------------S-----------------------------
-------S-------SS---S----S---S----------SSSSSSS------------S--SS-S--------------
----------S---S---------------------------S-----------------S---S-S---S-------S-
----------------------------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-----------------------------------S---------------------
-----S---------S-------------------S--------------------------------------------
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----SSSS---------------------------------------------------S--------------------
------------------------------------------------------------------S-------------
----------------------S--------------------------------S-------S----------------
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------------------------------------------------S-----------------------S-------
-----------------------------------------------------------------------------S--
-----S--------------------------------S-----------------------------------------
------------------------------------S--------------------S----------------------
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------S------------------------------------------S-----SSSSS--------------------
-------------------------------------------------------S------------------------
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-------------------------S------S----S--------------------S---------------------
----------S----S----------------------------------------------------------------
-----------------S--------------------------------------S-------------------S-S-
-----------------------------------------------------S-S------------------------
----------------S----------S--------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----------S-----------------------------S---------------------------------------
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-----------------------------------------------S-------------------S---------S--
-----------------------S-------------------S------------------------S----SSSSS--
--S-----------S---------------------------------S-----------------S---SS----S---
---------S----S--S---------------
>forward_103
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---ATCATCCACGTCACGACCAG---------------------------------------------------------
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>reverse_2077
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----------------------------------------------------------------------------ACGT
GTTTGCCTATGCCCTA----------------------------------------------------------------
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---------------------------------
