Multiple sequence alignment - TraesCS4A01G004800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G004800 chr4A 100.000 3320 0 0 1 3320 3123178 3119859 0.000000e+00 6131
1 TraesCS4A01G004800 chr4D 81.505 2844 275 121 118 2825 468269012 468271740 0.000000e+00 2106
2 TraesCS4A01G004800 chr4D 82.000 350 40 16 2924 3258 468272338 468272679 3.260000e-70 276
3 TraesCS4A01G004800 chr4D 91.964 112 8 1 2895 3005 468273128 468273239 4.430000e-34 156
4 TraesCS4A01G004800 chr4D 100.000 73 0 0 2989 3061 468273275 468273347 5.780000e-28 135
5 TraesCS4A01G004800 chr4D 81.065 169 29 2 2295 2462 496936501 496936667 7.470000e-27 132
6 TraesCS4A01G004800 chr4B 91.272 676 42 8 2041 2707 586584104 586584771 0.000000e+00 905
7 TraesCS4A01G004800 chr4B 90.018 551 43 8 1451 1995 586583555 586584099 0.000000e+00 702
8 TraesCS4A01G004800 chr4B 80.742 971 62 60 137 1010 586582069 586583011 2.790000e-180 641
9 TraesCS4A01G004800 chr4B 84.046 608 35 32 2767 3320 586584793 586585392 2.270000e-146 529
10 TraesCS4A01G004800 chr4B 76.577 333 54 13 2322 2635 637370339 637370666 9.530000e-36 161
11 TraesCS4A01G004800 chr4B 78.698 169 27 3 1641 1806 637380084 637380246 1.630000e-18 104
12 TraesCS4A01G004800 chr4B 95.238 63 2 1 1009 1071 586583046 586583107 7.580000e-17 99
13 TraesCS4A01G004800 chr5A 73.196 582 100 33 2076 2635 676375083 676375630 3.430000e-35 159
14 TraesCS4A01G004800 chr5A 80.791 177 22 5 1663 1833 676378381 676378551 9.670000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G004800 chr4A 3119859 3123178 3319 True 6131.00 6131 100.00000 1 3320 1 chr4A.!!$R1 3319
1 TraesCS4A01G004800 chr4D 468269012 468273347 4335 False 668.25 2106 88.86725 118 3258 4 chr4D.!!$F2 3140
2 TraesCS4A01G004800 chr4B 586582069 586585392 3323 False 575.20 905 88.26320 137 3320 5 chr4B.!!$F3 3183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.106149 CCGGCGCTAGGGATTTAACT 59.894 55.0 11.61 0.0 0.00 2.24 F
40 41 0.246635 ACTGATTCGGTTGAGTCGGG 59.753 55.0 0.00 0.0 40.52 5.14 F
41 42 0.246635 CTGATTCGGTTGAGTCGGGT 59.753 55.0 0.00 0.0 34.49 5.28 F
1655 2039 0.246635 ACCGACTCTTCAATCACGGG 59.753 55.0 0.00 0.0 43.76 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1702 0.307760 GACCAGCACAGTTTTCACGG 59.692 55.000 0.0 0.0 0.00 4.94 R
1490 1870 0.457035 CCAGGGTGCATGAATTTCCG 59.543 55.000 0.0 0.0 0.00 4.30 R
1712 2096 1.202818 ACTTTCTTCCACACTCCAGCC 60.203 52.381 0.0 0.0 0.00 4.85 R
3049 3996 0.766288 AGCTCCTCTGGGATTAGGGC 60.766 60.000 0.0 0.0 41.36 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.910585 CGCCGGCGCTAGGGATTT 62.911 66.667 38.48 0.00 0.00 2.17
20 21 2.424302 GCCGGCGCTAGGGATTTA 59.576 61.111 12.58 0.00 0.00 1.40
21 22 1.227734 GCCGGCGCTAGGGATTTAA 60.228 57.895 12.58 0.00 0.00 1.52
22 23 1.504647 GCCGGCGCTAGGGATTTAAC 61.505 60.000 12.58 2.39 0.00 2.01
23 24 0.106149 CCGGCGCTAGGGATTTAACT 59.894 55.000 11.61 0.00 0.00 2.24
24 25 1.217882 CGGCGCTAGGGATTTAACTG 58.782 55.000 11.61 0.00 0.00 3.16
25 26 1.202486 CGGCGCTAGGGATTTAACTGA 60.202 52.381 11.61 0.00 0.00 3.41
26 27 2.548067 CGGCGCTAGGGATTTAACTGAT 60.548 50.000 11.61 0.00 0.00 2.90
27 28 3.477530 GGCGCTAGGGATTTAACTGATT 58.522 45.455 11.61 0.00 0.00 2.57
28 29 3.498777 GGCGCTAGGGATTTAACTGATTC 59.501 47.826 11.61 0.00 0.00 2.52
29 30 3.184581 GCGCTAGGGATTTAACTGATTCG 59.815 47.826 11.61 0.00 0.00 3.34
30 31 3.741344 CGCTAGGGATTTAACTGATTCGG 59.259 47.826 0.00 0.00 0.00 4.30
31 32 4.704965 GCTAGGGATTTAACTGATTCGGT 58.295 43.478 0.00 0.00 0.00 4.69
32 33 5.123936 GCTAGGGATTTAACTGATTCGGTT 58.876 41.667 14.95 14.95 36.81 4.44
33 34 5.007724 GCTAGGGATTTAACTGATTCGGTTG 59.992 44.000 19.03 2.44 34.54 3.77
34 35 5.174037 AGGGATTTAACTGATTCGGTTGA 57.826 39.130 19.03 9.63 34.54 3.18
35 36 5.186198 AGGGATTTAACTGATTCGGTTGAG 58.814 41.667 19.03 0.00 34.54 3.02
36 37 4.941873 GGGATTTAACTGATTCGGTTGAGT 59.058 41.667 19.03 9.14 34.54 3.41
37 38 5.064834 GGGATTTAACTGATTCGGTTGAGTC 59.935 44.000 19.03 16.17 34.54 3.36
38 39 5.220416 GGATTTAACTGATTCGGTTGAGTCG 60.220 44.000 19.03 0.00 34.54 4.18
39 40 2.080286 AACTGATTCGGTTGAGTCGG 57.920 50.000 10.08 0.00 41.61 4.79
40 41 0.246635 ACTGATTCGGTTGAGTCGGG 59.753 55.000 0.00 0.00 40.52 5.14
41 42 0.246635 CTGATTCGGTTGAGTCGGGT 59.753 55.000 0.00 0.00 34.49 5.28
42 43 1.475280 CTGATTCGGTTGAGTCGGGTA 59.525 52.381 0.00 0.00 34.49 3.69
43 44 2.100916 CTGATTCGGTTGAGTCGGGTAT 59.899 50.000 0.00 0.00 34.49 2.73
44 45 2.498481 TGATTCGGTTGAGTCGGGTATT 59.502 45.455 0.00 0.00 33.79 1.89
45 46 3.700539 TGATTCGGTTGAGTCGGGTATTA 59.299 43.478 0.00 0.00 33.79 0.98
46 47 4.342951 TGATTCGGTTGAGTCGGGTATTAT 59.657 41.667 0.00 0.00 33.79 1.28
47 48 4.741321 TTCGGTTGAGTCGGGTATTATT 57.259 40.909 0.00 0.00 0.00 1.40
48 49 4.741321 TCGGTTGAGTCGGGTATTATTT 57.259 40.909 0.00 0.00 0.00 1.40
49 50 5.088680 TCGGTTGAGTCGGGTATTATTTT 57.911 39.130 0.00 0.00 0.00 1.82
50 51 5.490159 TCGGTTGAGTCGGGTATTATTTTT 58.510 37.500 0.00 0.00 0.00 1.94
67 68 2.550487 TTTTTGATCGGACGGCCTG 58.450 52.632 5.33 0.00 0.00 4.85
68 69 1.582610 TTTTTGATCGGACGGCCTGC 61.583 55.000 5.33 0.00 0.00 4.85
69 70 4.812476 TTGATCGGACGGCCTGCG 62.812 66.667 5.33 5.40 34.39 5.18
84 85 4.520846 GCGCGGCCGTTTGAGATG 62.521 66.667 28.70 7.64 36.67 2.90
85 86 3.864686 CGCGGCCGTTTGAGATGG 61.865 66.667 28.70 1.07 37.49 3.51
86 87 2.435938 GCGGCCGTTTGAGATGGA 60.436 61.111 28.70 0.00 36.44 3.41
87 88 1.819632 GCGGCCGTTTGAGATGGAT 60.820 57.895 28.70 0.00 36.44 3.41
88 89 0.531974 GCGGCCGTTTGAGATGGATA 60.532 55.000 28.70 0.00 36.44 2.59
89 90 1.948104 CGGCCGTTTGAGATGGATAA 58.052 50.000 19.50 0.00 36.44 1.75
90 91 2.285083 CGGCCGTTTGAGATGGATAAA 58.715 47.619 19.50 0.00 36.44 1.40
91 92 2.680841 CGGCCGTTTGAGATGGATAAAA 59.319 45.455 19.50 0.00 36.44 1.52
92 93 3.242739 CGGCCGTTTGAGATGGATAAAAG 60.243 47.826 19.50 0.00 36.44 2.27
93 94 3.066760 GGCCGTTTGAGATGGATAAAAGG 59.933 47.826 0.00 0.00 36.44 3.11
94 95 3.489229 GCCGTTTGAGATGGATAAAAGGC 60.489 47.826 9.41 9.41 46.12 4.35
95 96 3.242739 CCGTTTGAGATGGATAAAAGGCG 60.243 47.826 0.00 0.00 36.44 5.52
96 97 3.695816 GTTTGAGATGGATAAAAGGCGC 58.304 45.455 0.00 0.00 0.00 6.53
97 98 1.967319 TGAGATGGATAAAAGGCGCC 58.033 50.000 21.89 21.89 0.00 6.53
98 99 1.239347 GAGATGGATAAAAGGCGCCC 58.761 55.000 26.15 6.12 0.00 6.13
99 100 0.535102 AGATGGATAAAAGGCGCCCG 60.535 55.000 26.15 0.00 0.00 6.13
100 101 1.515521 GATGGATAAAAGGCGCCCGG 61.516 60.000 26.15 0.00 0.00 5.73
101 102 2.905373 GGATAAAAGGCGCCCGGG 60.905 66.667 26.15 19.09 0.00 5.73
102 103 2.124445 GATAAAAGGCGCCCGGGT 60.124 61.111 26.15 8.96 0.00 5.28
103 104 2.439519 ATAAAAGGCGCCCGGGTG 60.440 61.111 30.35 30.35 0.00 4.61
104 105 3.276642 ATAAAAGGCGCCCGGGTGT 62.277 57.895 33.67 17.18 0.00 4.16
105 106 1.912826 ATAAAAGGCGCCCGGGTGTA 61.913 55.000 33.67 18.83 0.00 2.90
106 107 2.524951 TAAAAGGCGCCCGGGTGTAG 62.525 60.000 33.67 18.03 0.00 2.74
109 110 4.910585 GGCGCCCGGGTGTAGATG 62.911 72.222 33.67 10.84 0.00 2.90
111 112 3.849951 CGCCCGGGTGTAGATGCT 61.850 66.667 26.60 0.00 0.00 3.79
112 113 2.495409 CGCCCGGGTGTAGATGCTA 61.495 63.158 26.60 0.00 0.00 3.49
113 114 1.367840 GCCCGGGTGTAGATGCTAG 59.632 63.158 24.63 0.00 0.00 3.42
114 115 1.400530 GCCCGGGTGTAGATGCTAGT 61.401 60.000 24.63 0.00 0.00 2.57
115 116 1.120530 CCCGGGTGTAGATGCTAGTT 58.879 55.000 14.18 0.00 0.00 2.24
116 117 2.313317 CCCGGGTGTAGATGCTAGTTA 58.687 52.381 14.18 0.00 0.00 2.24
123 124 5.453480 GGGTGTAGATGCTAGTTAGGAAAGG 60.453 48.000 0.00 0.00 0.00 3.11
124 125 5.051153 GTGTAGATGCTAGTTAGGAAAGGC 58.949 45.833 0.00 0.00 0.00 4.35
141 142 4.695231 CTTGGCCGTCGTCGTCGT 62.695 66.667 10.76 0.00 38.33 4.34
234 239 3.107661 CGTCCACGTAACCGCACC 61.108 66.667 0.00 0.00 37.70 5.01
251 256 2.809601 CGGAAAGCACCGTCCTCG 60.810 66.667 8.46 0.00 46.70 4.63
252 257 3.119096 GGAAAGCACCGTCCTCGC 61.119 66.667 0.00 0.00 35.54 5.03
253 258 3.119096 GAAAGCACCGTCCTCGCC 61.119 66.667 0.00 0.00 35.54 5.54
298 303 0.617820 AGTGGCCCACTGGGTAGTAG 60.618 60.000 17.46 0.00 46.51 2.57
299 304 0.908180 GTGGCCCACTGGGTAGTAGT 60.908 60.000 16.03 0.00 46.51 2.73
300 305 0.711782 TGGCCCACTGGGTAGTAGTA 59.288 55.000 16.03 0.00 46.51 1.82
307 312 1.133790 ACTGGGTAGTAGTAAAGCGCG 59.866 52.381 0.00 0.00 34.74 6.86
335 340 4.112341 GTCCGGTCTGGTCGGTCG 62.112 72.222 0.00 0.00 46.82 4.79
338 343 4.112341 CGGTCTGGTCGGTCGGTC 62.112 72.222 0.00 0.00 0.00 4.79
339 344 4.112341 GGTCTGGTCGGTCGGTCG 62.112 72.222 0.00 0.00 0.00 4.79
340 345 4.112341 GTCTGGTCGGTCGGTCGG 62.112 72.222 0.00 0.00 0.00 4.79
461 542 2.669569 GCCACGCTGGAGAAAGCA 60.670 61.111 8.04 0.00 43.73 3.91
520 611 2.876368 ATTTGCGGGCGGAGGAGAAG 62.876 60.000 0.00 0.00 0.00 2.85
560 673 2.796651 GCTTGGCTTGCTCATCCG 59.203 61.111 0.00 0.00 0.00 4.18
566 679 0.729690 GGCTTGCTCATCCGTTCTTC 59.270 55.000 0.00 0.00 0.00 2.87
581 710 1.194781 TCTTCGCCTGCTTCCTTCCT 61.195 55.000 0.00 0.00 0.00 3.36
599 728 1.594862 CCTCCGCTGCTATTTCTTTCG 59.405 52.381 0.00 0.00 0.00 3.46
646 799 3.636764 GGCCGAATCCACATAAATTTCCT 59.363 43.478 0.00 0.00 0.00 3.36
648 801 5.395214 GGCCGAATCCACATAAATTTCCTTT 60.395 40.000 0.00 0.00 0.00 3.11
651 804 5.971202 CGAATCCACATAAATTTCCTTTCCG 59.029 40.000 0.00 0.00 0.00 4.30
757 925 3.426917 TGGGGCTCCAAATCTCCC 58.573 61.111 0.25 0.00 40.73 4.30
812 988 1.474330 ATTCAAGGGGATTTGCGTCC 58.526 50.000 0.00 0.00 37.56 4.79
897 1086 2.109181 CCGCGGGGAGATCTTTCC 59.891 66.667 20.10 1.85 36.46 3.13
898 1087 2.435693 CCGCGGGGAGATCTTTCCT 61.436 63.158 20.10 0.00 37.40 3.36
899 1088 1.227380 CGCGGGGAGATCTTTCCTG 60.227 63.158 16.34 16.34 37.40 3.86
974 1163 1.219393 CCCTTGTCGCCTCCTTCTC 59.781 63.158 0.00 0.00 0.00 2.87
975 1164 1.153745 CCTTGTCGCCTCCTTCTCG 60.154 63.158 0.00 0.00 0.00 4.04
988 1177 2.818432 TCCTTCTCGTCCTGACAAGTAC 59.182 50.000 0.00 0.00 0.00 2.73
989 1178 2.414293 CCTTCTCGTCCTGACAAGTACG 60.414 54.545 0.00 0.00 36.71 3.67
990 1179 1.888215 TCTCGTCCTGACAAGTACGT 58.112 50.000 0.00 0.00 36.73 3.57
1049 1274 3.434319 CACTGGTCCGCCACATGC 61.434 66.667 0.00 0.00 40.46 4.06
1051 1276 2.821366 CTGGTCCGCCACATGCTC 60.821 66.667 0.00 0.00 40.46 4.26
1065 1290 2.172293 ACATGCTCCCTCTTCTCCATTC 59.828 50.000 0.00 0.00 0.00 2.67
1076 1310 9.853177 TCCCTCTTCTCCATTCTTATTTTAATC 57.147 33.333 0.00 0.00 0.00 1.75
1105 1339 9.409949 CGAGTATGTTTTCAGAACGAATATTTC 57.590 33.333 0.00 0.00 32.32 2.17
1144 1378 3.574284 TTTGGCTGTGTGATGCATTAC 57.426 42.857 14.37 14.37 0.00 1.89
1157 1391 0.735978 GCATTACTGCCCGGTTTTGC 60.736 55.000 0.00 0.00 42.88 3.68
1165 1413 0.733150 GCCCGGTTTTGCTAGTCATC 59.267 55.000 0.00 0.00 0.00 2.92
1185 1433 4.142609 TCTCCATGGTCTATTGTTGCTC 57.857 45.455 12.58 0.00 0.00 4.26
1196 1444 4.997395 TCTATTGTTGCTCACCACTCTTTC 59.003 41.667 0.00 0.00 0.00 2.62
1219 1467 5.942236 TCTCTCAATTCAAGGACCAAGATTG 59.058 40.000 0.00 0.00 0.00 2.67
1220 1468 5.634118 TCTCAATTCAAGGACCAAGATTGT 58.366 37.500 0.00 0.00 0.00 2.71
1224 1472 8.421249 TCAATTCAAGGACCAAGATTGTTTAT 57.579 30.769 0.00 0.00 0.00 1.40
1229 1477 8.117813 TCAAGGACCAAGATTGTTTATTTACC 57.882 34.615 0.00 0.00 0.00 2.85
1237 1485 8.856247 CCAAGATTGTTTATTTACCGCTTTAAC 58.144 33.333 0.00 0.00 0.00 2.01
1238 1486 9.620660 CAAGATTGTTTATTTACCGCTTTAACT 57.379 29.630 0.00 0.00 0.00 2.24
1239 1487 9.620660 AAGATTGTTTATTTACCGCTTTAACTG 57.379 29.630 0.00 0.00 0.00 3.16
1259 1543 1.926510 GCCACTTGTTTGTTTGTCTGC 59.073 47.619 0.00 0.00 0.00 4.26
1266 1550 2.286125 TGTTTGTTTGTCTGCATCGTCG 60.286 45.455 0.00 0.00 0.00 5.12
1274 1558 1.083806 TCTGCATCGTCGTGCCATTC 61.084 55.000 14.37 0.00 44.43 2.67
1278 1562 1.358877 CATCGTCGTGCCATTCTTCA 58.641 50.000 0.00 0.00 0.00 3.02
1300 1584 2.464157 AAGAGGTCTCTTCAAAGCGG 57.536 50.000 7.37 0.00 46.13 5.52
1305 1590 1.734465 GGTCTCTTCAAAGCGGACATG 59.266 52.381 13.48 0.00 33.45 3.21
1310 1595 1.573829 TTCAAAGCGGACATGGCGAC 61.574 55.000 0.00 0.00 35.00 5.19
1327 1612 2.261671 CGACACCCTCCTTCCACG 59.738 66.667 0.00 0.00 0.00 4.94
1333 1618 1.064825 ACCCTCCTTCCACGAATTGT 58.935 50.000 0.00 0.00 0.00 2.71
1377 1690 3.379372 GCTCCTTGTGTGCATATGATTGT 59.621 43.478 6.97 0.00 33.65 2.71
1378 1691 4.732647 GCTCCTTGTGTGCATATGATTGTG 60.733 45.833 6.97 0.00 33.65 3.33
1380 1693 5.008980 TCCTTGTGTGCATATGATTGTGAA 58.991 37.500 6.97 0.00 0.00 3.18
1383 1696 6.254804 CCTTGTGTGCATATGATTGTGAATTG 59.745 38.462 6.97 0.00 0.00 2.32
1384 1697 5.103687 TGTGTGCATATGATTGTGAATTGC 58.896 37.500 6.97 0.00 0.00 3.56
1385 1698 5.103687 GTGTGCATATGATTGTGAATTGCA 58.896 37.500 6.97 0.00 36.37 4.08
1386 1699 5.577554 GTGTGCATATGATTGTGAATTGCAA 59.422 36.000 6.97 0.00 39.97 4.08
1387 1700 6.091034 GTGTGCATATGATTGTGAATTGCAAA 59.909 34.615 6.97 0.00 39.97 3.68
1388 1701 6.311690 TGTGCATATGATTGTGAATTGCAAAG 59.688 34.615 6.97 0.00 39.97 2.77
1389 1702 5.292345 TGCATATGATTGTGAATTGCAAAGC 59.708 36.000 6.97 0.00 35.85 3.51
1390 1703 5.277154 GCATATGATTGTGAATTGCAAAGCC 60.277 40.000 6.97 0.00 0.00 4.35
1391 1704 2.674954 TGATTGTGAATTGCAAAGCCG 58.325 42.857 1.71 0.00 0.00 5.52
1399 1712 2.888834 ATTGCAAAGCCGTGAAAACT 57.111 40.000 1.71 0.00 0.00 2.66
1401 1714 0.814457 TGCAAAGCCGTGAAAACTGT 59.186 45.000 0.00 0.00 0.00 3.55
1402 1715 1.199624 GCAAAGCCGTGAAAACTGTG 58.800 50.000 0.00 0.00 0.00 3.66
1405 1718 0.381801 AAGCCGTGAAAACTGTGCTG 59.618 50.000 0.00 0.00 0.00 4.41
1428 1741 7.397892 TGGTCTCGCCAAAATCAATAAAATA 57.602 32.000 0.00 0.00 45.94 1.40
1461 1784 8.715998 GGACATCACTATAGTAGCATGAATTTG 58.284 37.037 18.75 6.70 0.00 2.32
1472 1852 2.539547 GCATGAATTTGTGGATCCGTCG 60.540 50.000 7.39 0.00 0.00 5.12
1488 1868 4.370049 TCCGTCGTTTACTTTCATGTTGA 58.630 39.130 0.00 0.00 0.00 3.18
1490 1870 5.119588 TCCGTCGTTTACTTTCATGTTGATC 59.880 40.000 0.00 0.00 0.00 2.92
1501 1881 7.031372 ACTTTCATGTTGATCGGAAATTCATG 58.969 34.615 0.00 0.00 34.46 3.07
1503 1883 4.398673 TCATGTTGATCGGAAATTCATGCA 59.601 37.500 0.00 0.00 33.58 3.96
1523 1906 4.220382 TGCACCCTGGAAATAAACTGATTG 59.780 41.667 0.00 0.00 0.00 2.67
1536 1920 2.440409 ACTGATTGGTGGCATCTGTTC 58.560 47.619 0.00 0.00 30.87 3.18
1577 1961 1.375523 CACTAACCTGGTGTCGGCC 60.376 63.158 0.00 0.00 0.00 6.13
1645 2029 3.866449 GCCTCTTTCATCAACCGACTCTT 60.866 47.826 0.00 0.00 0.00 2.85
1655 2039 0.246635 ACCGACTCTTCAATCACGGG 59.753 55.000 0.00 0.00 43.76 5.28
1664 2048 1.209127 CAATCACGGGAACAACGCC 59.791 57.895 0.00 0.00 34.00 5.68
1669 2053 2.184167 ACGGGAACAACGCCAACAG 61.184 57.895 0.00 0.00 34.00 3.16
1677 2061 2.306847 ACAACGCCAACAGGAAAGATT 58.693 42.857 0.00 0.00 0.00 2.40
1712 2096 0.771127 TCAAGGTTCTCCAAGGTGGG 59.229 55.000 0.00 0.00 38.32 4.61
1741 2125 2.612212 TGTGGAAGAAAGTCGAGTTTGC 59.388 45.455 22.50 13.44 0.00 3.68
1749 2133 4.735132 TCGAGTTTGCGAGGCCCG 62.735 66.667 0.00 3.77 42.21 6.13
1827 2211 1.437625 TTTCAGATCGCGTGATTGCA 58.562 45.000 13.61 1.59 34.09 4.08
1828 2212 1.001624 TTCAGATCGCGTGATTGCAG 58.998 50.000 13.61 3.98 34.09 4.41
1829 2213 1.011463 CAGATCGCGTGATTGCAGC 60.011 57.895 13.61 0.00 34.09 5.25
1870 2254 1.047801 GGTGATGGGGCACAAACTTT 58.952 50.000 0.00 0.00 40.52 2.66
1895 2279 2.698797 AGGTGATCACGAATCGGGTATT 59.301 45.455 19.33 0.00 37.17 1.89
1984 2368 4.631813 CCTTCTCGACCAAAATTCAGGTAG 59.368 45.833 2.05 3.03 38.50 3.18
1988 2372 4.501071 TCGACCAAAATTCAGGTAGCTAC 58.499 43.478 15.88 15.88 38.50 3.58
2006 2390 5.706447 AGCTACCTCAATCACTACCTCATA 58.294 41.667 0.00 0.00 0.00 2.15
2029 2413 3.558829 CAGTGTCTGGTGCATCATCATAC 59.441 47.826 0.00 0.00 0.00 2.39
2037 2421 5.623169 TGGTGCATCATCATACACACATAT 58.377 37.500 0.00 0.00 34.69 1.78
2038 2422 5.470777 TGGTGCATCATCATACACACATATG 59.529 40.000 0.00 0.00 34.69 1.78
2039 2423 5.388111 GTGCATCATCATACACACATATGC 58.612 41.667 1.58 0.00 39.08 3.14
2040 2424 5.180680 GTGCATCATCATACACACATATGCT 59.819 40.000 1.58 0.00 39.30 3.79
2041 2425 5.410439 TGCATCATCATACACACATATGCTC 59.590 40.000 1.58 0.00 39.30 4.26
2044 2428 7.308408 GCATCATCATACACACATATGCTCTTT 60.308 37.037 1.58 0.00 36.44 2.52
2046 2430 9.783081 ATCATCATACACACATATGCTCTTTTA 57.217 29.630 1.58 0.00 33.31 1.52
2047 2431 9.612066 TCATCATACACACATATGCTCTTTTAA 57.388 29.630 1.58 0.00 33.31 1.52
2097 2481 7.548097 CATACCTATGTTATCCGTAAGCTCAT 58.452 38.462 0.00 0.00 0.00 2.90
2098 2482 8.683615 CATACCTATGTTATCCGTAAGCTCATA 58.316 37.037 0.00 0.00 0.00 2.15
2099 2483 7.159322 ACCTATGTTATCCGTAAGCTCATAG 57.841 40.000 6.39 6.39 35.50 2.23
2102 2486 8.399425 CCTATGTTATCCGTAAGCTCATAGTAG 58.601 40.741 10.59 0.00 34.57 2.57
2129 2517 0.385473 CTACGGGCGCTGTTGTTTTG 60.385 55.000 7.64 0.00 0.00 2.44
2241 2629 2.202453 GACGACGAGGCGGAAGTC 60.202 66.667 0.00 0.00 35.12 3.01
2258 2646 2.102438 TCGGCGCAGAATCAAGCAG 61.102 57.895 8.08 0.00 0.00 4.24
2260 2648 1.638388 CGGCGCAGAATCAAGCAGAA 61.638 55.000 10.83 0.00 0.00 3.02
2300 2688 3.995199 TGAGCAGTTCTTCCACTTACTG 58.005 45.455 0.00 0.00 40.65 2.74
2320 2708 1.635663 CGCCCAAACGATCCAGTGAC 61.636 60.000 0.00 0.00 34.06 3.67
2332 2720 3.868757 TCCAGTGACTTTACAGGATCG 57.131 47.619 0.00 0.00 32.11 3.69
2333 2721 2.496070 TCCAGTGACTTTACAGGATCGG 59.504 50.000 0.00 0.00 32.11 4.18
2355 2743 1.457346 AGCATAGTCTGTTGCAAGCC 58.543 50.000 0.00 0.00 41.35 4.35
2372 2760 1.199624 GCCTTGACAAAAGCAACACG 58.800 50.000 5.25 0.00 0.00 4.49
2400 2788 0.522180 CTCAAAGAGCCTGCTTGCTG 59.478 55.000 5.25 0.00 42.95 4.41
2484 2873 4.187810 GGTAAATGCGCCACCGGC 62.188 66.667 4.18 0.00 46.75 6.13
2517 2906 9.784531 TGGAGGATTTATTTGACAGATTAGATC 57.215 33.333 0.00 0.00 0.00 2.75
2595 2992 0.034059 AGGAACAACAGGCTCACTCG 59.966 55.000 0.00 0.00 0.00 4.18
2611 3008 3.374367 TCACTCGCTGCTTAGTAGTAGTG 59.626 47.826 20.00 20.00 43.45 2.74
2614 3011 2.681848 TCGCTGCTTAGTAGTAGTGTCC 59.318 50.000 0.00 0.00 42.87 4.02
2665 3062 5.160641 ACGGATGTAATGAAATGTTGTTGC 58.839 37.500 0.00 0.00 0.00 4.17
2683 3080 4.270566 TGTTGCTTGCAATGTGAATGAAAC 59.729 37.500 11.32 0.00 0.00 2.78
2703 3100 6.038825 TGAAACGTTCATGTTTACCACAAGAT 59.961 34.615 0.00 0.00 41.89 2.40
2711 3108 8.203937 TCATGTTTACCACAAGATAATAACGG 57.796 34.615 0.00 0.00 39.50 4.44
2712 3109 7.825270 TCATGTTTACCACAAGATAATAACGGT 59.175 33.333 0.00 0.00 39.50 4.83
2714 3111 6.935771 TGTTTACCACAAGATAATAACGGTGT 59.064 34.615 0.00 0.00 29.87 4.16
2720 3117 6.819649 CCACAAGATAATAACGGTGTCCTAAA 59.180 38.462 0.00 0.00 0.00 1.85
2721 3118 7.334921 CCACAAGATAATAACGGTGTCCTAAAA 59.665 37.037 0.00 0.00 0.00 1.52
2732 3129 5.219633 CGGTGTCCTAAAATGTTCCTTTTG 58.780 41.667 0.00 0.00 31.15 2.44
2733 3130 4.988540 GGTGTCCTAAAATGTTCCTTTTGC 59.011 41.667 0.00 0.00 31.15 3.68
2737 3134 6.183360 TGTCCTAAAATGTTCCTTTTGCATGT 60.183 34.615 0.00 0.00 31.15 3.21
2738 3135 7.014711 TGTCCTAAAATGTTCCTTTTGCATGTA 59.985 33.333 0.00 0.00 31.15 2.29
2739 3136 7.870445 GTCCTAAAATGTTCCTTTTGCATGTAA 59.130 33.333 0.00 0.00 31.15 2.41
2740 3137 8.592809 TCCTAAAATGTTCCTTTTGCATGTAAT 58.407 29.630 0.00 0.00 31.15 1.89
2741 3138 8.872845 CCTAAAATGTTCCTTTTGCATGTAATC 58.127 33.333 0.00 0.00 31.15 1.75
2742 3139 7.671495 AAAATGTTCCTTTTGCATGTAATCC 57.329 32.000 0.00 0.00 0.00 3.01
2743 3140 4.799564 TGTTCCTTTTGCATGTAATCCC 57.200 40.909 0.00 0.00 0.00 3.85
2744 3141 4.155709 TGTTCCTTTTGCATGTAATCCCA 58.844 39.130 0.00 0.00 0.00 4.37
2745 3142 4.220382 TGTTCCTTTTGCATGTAATCCCAG 59.780 41.667 0.00 0.00 0.00 4.45
2746 3143 3.364549 TCCTTTTGCATGTAATCCCAGG 58.635 45.455 0.00 1.69 0.00 4.45
2747 3144 3.011144 TCCTTTTGCATGTAATCCCAGGA 59.989 43.478 0.00 3.97 0.00 3.86
2748 3145 3.962718 CCTTTTGCATGTAATCCCAGGAT 59.037 43.478 0.00 0.00 36.23 3.24
2749 3146 4.202182 CCTTTTGCATGTAATCCCAGGATG 60.202 45.833 0.00 0.00 34.70 3.51
2750 3147 1.985473 TGCATGTAATCCCAGGATGC 58.015 50.000 0.00 1.03 34.70 3.91
2751 3148 1.496001 TGCATGTAATCCCAGGATGCT 59.504 47.619 9.86 0.00 34.70 3.79
2752 3149 2.710471 TGCATGTAATCCCAGGATGCTA 59.290 45.455 9.86 0.00 34.70 3.49
2753 3150 3.077359 GCATGTAATCCCAGGATGCTAC 58.923 50.000 0.00 1.07 34.70 3.58
2754 3151 3.244700 GCATGTAATCCCAGGATGCTACT 60.245 47.826 0.00 0.00 34.70 2.57
2755 3152 4.321718 CATGTAATCCCAGGATGCTACTG 58.678 47.826 0.00 0.00 34.70 2.74
2756 3153 3.653164 TGTAATCCCAGGATGCTACTGA 58.347 45.455 0.00 0.00 38.20 3.41
2764 3161 3.375642 CAGGATGCTACTGATACACACG 58.624 50.000 0.00 0.00 38.20 4.49
2801 3203 6.713762 AAAACCACAGATCAAATTGACAGA 57.286 33.333 0.00 0.00 0.00 3.41
2809 3211 8.671028 CACAGATCAAATTGACAGATGATAACA 58.329 33.333 0.00 0.00 32.90 2.41
2830 3232 6.182039 ACATTGATTCAATTGGTACTGACG 57.818 37.500 9.19 0.00 31.05 4.35
2833 3235 4.888917 TGATTCAATTGGTACTGACGTGA 58.111 39.130 5.42 0.00 0.00 4.35
2837 3239 4.000325 TCAATTGGTACTGACGTGAATGG 59.000 43.478 5.42 0.00 0.00 3.16
2838 3240 2.465860 TTGGTACTGACGTGAATGGG 57.534 50.000 0.00 0.00 0.00 4.00
2845 3249 5.644636 GGTACTGACGTGAATGGGAAAATAA 59.355 40.000 0.00 0.00 0.00 1.40
2861 3265 8.310382 TGGGAAAATAATTGTAACATGAACCTG 58.690 33.333 0.00 0.00 0.00 4.00
2937 3873 0.809385 GCACTGTACGTCTCCTGCTA 59.191 55.000 0.00 0.00 0.00 3.49
2960 3896 8.589629 GCTAATGCAGTGAAATAAATCAAAGTG 58.410 33.333 0.00 0.00 39.41 3.16
2966 3903 7.566709 CAGTGAAATAAATCAAAGTGTTTGGC 58.433 34.615 0.00 0.00 40.98 4.52
2978 3915 4.278975 AGTGTTTGGCTTTGTGGAAAAA 57.721 36.364 0.00 0.00 0.00 1.94
3016 3954 0.950836 CGCTTGTTGGAATGTGTGGA 59.049 50.000 0.00 0.00 0.00 4.02
3024 3962 3.304911 TGGAATGTGTGGAAGGAACAA 57.695 42.857 0.00 0.00 0.00 2.83
3027 3965 4.142049 TGGAATGTGTGGAAGGAACAAAAC 60.142 41.667 0.00 0.00 0.00 2.43
3028 3966 4.142049 GGAATGTGTGGAAGGAACAAAACA 60.142 41.667 0.00 0.00 0.00 2.83
3029 3967 5.453198 GGAATGTGTGGAAGGAACAAAACAT 60.453 40.000 0.00 0.00 32.13 2.71
3030 3968 4.383850 TGTGTGGAAGGAACAAAACATG 57.616 40.909 0.00 0.00 0.00 3.21
3031 3969 4.019858 TGTGTGGAAGGAACAAAACATGA 58.980 39.130 0.00 0.00 0.00 3.07
3033 3971 3.636300 TGTGGAAGGAACAAAACATGAGG 59.364 43.478 0.00 0.00 0.00 3.86
3034 3972 3.888930 GTGGAAGGAACAAAACATGAGGA 59.111 43.478 0.00 0.00 0.00 3.71
3035 3973 4.524328 GTGGAAGGAACAAAACATGAGGAT 59.476 41.667 0.00 0.00 0.00 3.24
3036 3974 4.766891 TGGAAGGAACAAAACATGAGGATC 59.233 41.667 0.00 0.00 0.00 3.36
3043 3990 5.808042 ACAAAACATGAGGATCTTCATCG 57.192 39.130 16.85 14.25 35.67 3.84
3047 3994 2.371179 ACATGAGGATCTTCATCGGCAT 59.629 45.455 16.85 0.00 35.67 4.40
3049 3996 2.842457 TGAGGATCTTCATCGGCATTG 58.158 47.619 2.91 0.00 34.92 2.82
3062 4009 0.185901 GGCATTGCCCTAATCCCAGA 59.814 55.000 17.28 0.00 44.06 3.86
3097 4044 2.964464 ACCACACATGAAAGCATCCAAA 59.036 40.909 0.00 0.00 30.68 3.28
3151 4107 4.017126 CCCGAGAGCCCTTTTTAGAAAAT 58.983 43.478 0.00 0.00 0.00 1.82
3153 4109 5.828328 CCCGAGAGCCCTTTTTAGAAAATAT 59.172 40.000 0.00 0.00 0.00 1.28
3154 4110 6.996282 CCCGAGAGCCCTTTTTAGAAAATATA 59.004 38.462 0.00 0.00 0.00 0.86
3155 4111 7.665974 CCCGAGAGCCCTTTTTAGAAAATATAT 59.334 37.037 0.00 0.00 0.00 0.86
3297 4286 9.195411 CTGCACATGATTTAATTTTTGTGTAGT 57.805 29.630 17.05 0.00 40.57 2.73
3316 4305 7.445707 TGTGTAGTTTTCACCAAAGCATATACA 59.554 33.333 0.00 0.00 35.25 2.29
3319 4308 7.100458 AGTTTTCACCAAAGCATATACATCC 57.900 36.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.981977 TTAAATCCCTAGCGCCGGCG 62.982 60.000 43.13 43.13 46.35 6.46
3 4 1.227734 TTAAATCCCTAGCGCCGGC 60.228 57.895 19.07 19.07 40.37 6.13
4 5 0.106149 AGTTAAATCCCTAGCGCCGG 59.894 55.000 2.29 4.78 0.00 6.13
5 6 1.202486 TCAGTTAAATCCCTAGCGCCG 60.202 52.381 2.29 0.00 0.00 6.46
6 7 2.614829 TCAGTTAAATCCCTAGCGCC 57.385 50.000 2.29 0.00 0.00 6.53
7 8 3.184581 CGAATCAGTTAAATCCCTAGCGC 59.815 47.826 0.00 0.00 0.00 5.92
8 9 3.741344 CCGAATCAGTTAAATCCCTAGCG 59.259 47.826 0.00 0.00 0.00 4.26
9 10 4.704965 ACCGAATCAGTTAAATCCCTAGC 58.295 43.478 0.00 0.00 0.00 3.42
10 11 6.346096 TCAACCGAATCAGTTAAATCCCTAG 58.654 40.000 0.00 0.00 0.00 3.02
11 12 6.070424 ACTCAACCGAATCAGTTAAATCCCTA 60.070 38.462 0.00 0.00 0.00 3.53
12 13 5.174037 TCAACCGAATCAGTTAAATCCCT 57.826 39.130 0.00 0.00 0.00 4.20
13 14 4.941873 ACTCAACCGAATCAGTTAAATCCC 59.058 41.667 0.00 0.00 0.00 3.85
14 15 5.220416 CGACTCAACCGAATCAGTTAAATCC 60.220 44.000 0.00 0.00 0.00 3.01
15 16 5.220416 CCGACTCAACCGAATCAGTTAAATC 60.220 44.000 0.00 0.00 0.00 2.17
16 17 4.630069 CCGACTCAACCGAATCAGTTAAAT 59.370 41.667 0.00 0.00 0.00 1.40
17 18 3.991773 CCGACTCAACCGAATCAGTTAAA 59.008 43.478 0.00 0.00 0.00 1.52
18 19 3.581755 CCGACTCAACCGAATCAGTTAA 58.418 45.455 0.00 0.00 0.00 2.01
19 20 2.094390 CCCGACTCAACCGAATCAGTTA 60.094 50.000 0.00 0.00 0.00 2.24
20 21 1.337823 CCCGACTCAACCGAATCAGTT 60.338 52.381 0.00 0.00 0.00 3.16
21 22 0.246635 CCCGACTCAACCGAATCAGT 59.753 55.000 0.00 0.00 0.00 3.41
22 23 0.246635 ACCCGACTCAACCGAATCAG 59.753 55.000 0.00 0.00 0.00 2.90
23 24 1.548081 TACCCGACTCAACCGAATCA 58.452 50.000 0.00 0.00 0.00 2.57
24 25 2.884894 ATACCCGACTCAACCGAATC 57.115 50.000 0.00 0.00 0.00 2.52
25 26 4.950205 ATAATACCCGACTCAACCGAAT 57.050 40.909 0.00 0.00 0.00 3.34
26 27 4.741321 AATAATACCCGACTCAACCGAA 57.259 40.909 0.00 0.00 0.00 4.30
27 28 4.741321 AAATAATACCCGACTCAACCGA 57.259 40.909 0.00 0.00 0.00 4.69
28 29 5.806366 AAAAATAATACCCGACTCAACCG 57.194 39.130 0.00 0.00 0.00 4.44
49 50 1.582610 GCAGGCCGTCCGATCAAAAA 61.583 55.000 0.00 0.00 37.47 1.94
50 51 2.038269 GCAGGCCGTCCGATCAAAA 61.038 57.895 0.00 0.00 37.47 2.44
51 52 2.435938 GCAGGCCGTCCGATCAAA 60.436 61.111 0.00 0.00 37.47 2.69
52 53 4.812476 CGCAGGCCGTCCGATCAA 62.812 66.667 0.00 0.00 37.47 2.57
67 68 4.520846 CATCTCAAACGGCCGCGC 62.521 66.667 28.58 0.00 0.00 6.86
68 69 3.864686 CCATCTCAAACGGCCGCG 61.865 66.667 28.58 14.86 0.00 6.46
69 70 0.531974 TATCCATCTCAAACGGCCGC 60.532 55.000 28.58 0.00 0.00 6.53
70 71 1.948104 TTATCCATCTCAAACGGCCG 58.052 50.000 26.86 26.86 0.00 6.13
71 72 3.066760 CCTTTTATCCATCTCAAACGGCC 59.933 47.826 0.00 0.00 0.00 6.13
72 73 3.489229 GCCTTTTATCCATCTCAAACGGC 60.489 47.826 0.00 0.00 38.76 5.68
73 74 3.242739 CGCCTTTTATCCATCTCAAACGG 60.243 47.826 0.00 0.00 0.00 4.44
74 75 3.788797 GCGCCTTTTATCCATCTCAAACG 60.789 47.826 0.00 0.00 0.00 3.60
75 76 3.489229 GGCGCCTTTTATCCATCTCAAAC 60.489 47.826 22.15 0.00 0.00 2.93
76 77 2.687935 GGCGCCTTTTATCCATCTCAAA 59.312 45.455 22.15 0.00 0.00 2.69
77 78 2.297701 GGCGCCTTTTATCCATCTCAA 58.702 47.619 22.15 0.00 0.00 3.02
78 79 1.476833 GGGCGCCTTTTATCCATCTCA 60.477 52.381 28.56 0.00 0.00 3.27
79 80 1.239347 GGGCGCCTTTTATCCATCTC 58.761 55.000 28.56 0.00 0.00 2.75
80 81 0.535102 CGGGCGCCTTTTATCCATCT 60.535 55.000 28.56 0.00 0.00 2.90
81 82 1.515521 CCGGGCGCCTTTTATCCATC 61.516 60.000 28.56 3.90 0.00 3.51
82 83 1.528309 CCGGGCGCCTTTTATCCAT 60.528 57.895 28.56 0.00 0.00 3.41
83 84 2.124487 CCGGGCGCCTTTTATCCA 60.124 61.111 28.56 0.00 0.00 3.41
84 85 2.905373 CCCGGGCGCCTTTTATCC 60.905 66.667 28.56 6.45 0.00 2.59
85 86 2.124445 ACCCGGGCGCCTTTTATC 60.124 61.111 28.56 7.30 0.00 1.75
86 87 1.912826 TACACCCGGGCGCCTTTTAT 61.913 55.000 28.56 10.56 0.00 1.40
87 88 2.524951 CTACACCCGGGCGCCTTTTA 62.525 60.000 28.56 8.34 0.00 1.52
88 89 3.912745 CTACACCCGGGCGCCTTTT 62.913 63.158 28.56 5.38 0.00 2.27
89 90 4.404098 CTACACCCGGGCGCCTTT 62.404 66.667 28.56 4.97 0.00 3.11
92 93 4.910585 CATCTACACCCGGGCGCC 62.911 72.222 24.08 21.18 0.00 6.53
94 95 2.421877 CTAGCATCTACACCCGGGCG 62.422 65.000 24.08 15.53 0.00 6.13
95 96 1.367840 CTAGCATCTACACCCGGGC 59.632 63.158 24.08 3.10 0.00 6.13
96 97 1.120530 AACTAGCATCTACACCCGGG 58.879 55.000 22.25 22.25 0.00 5.73
97 98 2.296471 CCTAACTAGCATCTACACCCGG 59.704 54.545 0.00 0.00 0.00 5.73
98 99 3.220110 TCCTAACTAGCATCTACACCCG 58.780 50.000 0.00 0.00 0.00 5.28
99 100 5.453480 CCTTTCCTAACTAGCATCTACACCC 60.453 48.000 0.00 0.00 0.00 4.61
100 101 5.602628 CCTTTCCTAACTAGCATCTACACC 58.397 45.833 0.00 0.00 0.00 4.16
101 102 5.051153 GCCTTTCCTAACTAGCATCTACAC 58.949 45.833 0.00 0.00 0.00 2.90
102 103 4.962995 AGCCTTTCCTAACTAGCATCTACA 59.037 41.667 0.00 0.00 0.00 2.74
103 104 5.538849 AGCCTTTCCTAACTAGCATCTAC 57.461 43.478 0.00 0.00 0.00 2.59
104 105 5.163301 CCAAGCCTTTCCTAACTAGCATCTA 60.163 44.000 0.00 0.00 0.00 1.98
105 106 4.384647 CCAAGCCTTTCCTAACTAGCATCT 60.385 45.833 0.00 0.00 0.00 2.90
106 107 3.879892 CCAAGCCTTTCCTAACTAGCATC 59.120 47.826 0.00 0.00 0.00 3.91
107 108 3.891049 CCAAGCCTTTCCTAACTAGCAT 58.109 45.455 0.00 0.00 0.00 3.79
108 109 2.618045 GCCAAGCCTTTCCTAACTAGCA 60.618 50.000 0.00 0.00 0.00 3.49
109 110 2.017782 GCCAAGCCTTTCCTAACTAGC 58.982 52.381 0.00 0.00 0.00 3.42
110 111 2.644676 GGCCAAGCCTTTCCTAACTAG 58.355 52.381 0.00 0.00 46.69 2.57
111 112 2.801077 GGCCAAGCCTTTCCTAACTA 57.199 50.000 0.00 0.00 46.69 2.24
112 113 3.672066 GGCCAAGCCTTTCCTAACT 57.328 52.632 0.00 0.00 46.69 2.24
124 125 4.695231 ACGACGACGACGGCCAAG 62.695 66.667 22.36 0.00 45.81 3.61
206 207 4.364409 GTGGACGCGCCGTGTTTC 62.364 66.667 5.73 1.32 41.37 2.78
323 328 4.112341 CCGACCGACCGACCAGAC 62.112 72.222 0.00 0.00 0.00 3.51
335 340 2.039137 AAGGGGAGGAGACCGACC 59.961 66.667 0.00 0.00 0.00 4.79
337 342 2.363361 GGAAGGGGAGGAGACCGA 59.637 66.667 0.00 0.00 0.00 4.69
338 343 2.764547 GGGAAGGGGAGGAGACCG 60.765 72.222 0.00 0.00 0.00 4.79
339 344 2.367107 GGGGAAGGGGAGGAGACC 60.367 72.222 0.00 0.00 0.00 3.85
340 345 2.367107 GGGGGAAGGGGAGGAGAC 60.367 72.222 0.00 0.00 0.00 3.36
398 417 2.906897 ATATTTGCTGGCCGGCCG 60.907 61.111 39.00 32.10 39.42 6.13
399 418 1.529244 AGATATTTGCTGGCCGGCC 60.529 57.895 39.40 39.40 0.00 6.13
400 419 1.656441 CAGATATTTGCTGGCCGGC 59.344 57.895 30.57 30.57 0.00 6.13
401 420 2.334307 CCAGATATTTGCTGGCCGG 58.666 57.895 7.41 7.41 45.66 6.13
408 427 3.042560 GCGGGGCCAGATATTTGC 58.957 61.111 8.22 0.00 0.00 3.68
455 536 2.388232 CCTACGTGCCGGTGCTTTC 61.388 63.158 1.90 0.00 38.71 2.62
520 611 1.521141 GGGCGGAGGAAGGAAGTAC 59.479 63.158 0.00 0.00 0.00 2.73
560 673 0.799393 GAAGGAAGCAGGCGAAGAAC 59.201 55.000 0.00 0.00 0.00 3.01
566 679 2.124942 GGAGGAAGGAAGCAGGCG 60.125 66.667 0.00 0.00 0.00 5.52
581 710 1.006832 GCGAAAGAAATAGCAGCGGA 58.993 50.000 0.00 0.00 0.00 5.54
864 1046 1.800681 CGGATTTCCTTTGCGGGAC 59.199 57.895 0.00 0.00 34.78 4.46
867 1049 2.100216 CGCGGATTTCCTTTGCGG 59.900 61.111 0.00 0.00 44.65 5.69
869 1051 2.489751 CCCGCGGATTTCCTTTGC 59.510 61.111 30.73 0.00 0.00 3.68
897 1086 1.071987 TGCTGGCCTGAGACAACAG 59.928 57.895 14.77 0.00 37.61 3.16
898 1087 1.227943 GTGCTGGCCTGAGACAACA 60.228 57.895 14.77 0.00 0.00 3.33
899 1088 1.227943 TGTGCTGGCCTGAGACAAC 60.228 57.895 14.77 3.69 0.00 3.32
927 1116 3.474570 CAGAGGCCCCCGAGGAAG 61.475 72.222 0.00 0.00 38.24 3.46
965 1154 1.203523 CTTGTCAGGACGAGAAGGAGG 59.796 57.143 10.57 0.00 43.90 4.30
966 1155 1.889829 ACTTGTCAGGACGAGAAGGAG 59.110 52.381 20.71 0.00 46.76 3.69
967 1156 1.996798 ACTTGTCAGGACGAGAAGGA 58.003 50.000 20.71 0.00 46.76 3.36
975 1164 5.576895 GGATACTTACGTACTTGTCAGGAC 58.423 45.833 0.00 0.00 0.00 3.85
988 1177 0.594602 TCGCCCATCGGATACTTACG 59.405 55.000 0.00 0.00 39.05 3.18
989 1178 1.067776 CCTCGCCCATCGGATACTTAC 60.068 57.143 0.00 0.00 39.05 2.34
990 1179 1.202964 TCCTCGCCCATCGGATACTTA 60.203 52.381 0.00 0.00 39.05 2.24
998 1187 4.907034 CGACGTCCTCGCCCATCG 62.907 72.222 10.58 0.00 41.18 3.84
1049 1274 9.859152 ATTAAAATAAGAATGGAGAAGAGGGAG 57.141 33.333 0.00 0.00 0.00 4.30
1051 1276 9.859152 AGATTAAAATAAGAATGGAGAAGAGGG 57.141 33.333 0.00 0.00 0.00 4.30
1076 1310 6.922980 TTCGTTCTGAAAACATACTCGTAG 57.077 37.500 0.00 0.00 32.37 3.51
1110 1344 8.584157 TCACACAGCCAAAAACATAGATAAAAT 58.416 29.630 0.00 0.00 0.00 1.82
1111 1345 7.946207 TCACACAGCCAAAAACATAGATAAAA 58.054 30.769 0.00 0.00 0.00 1.52
1113 1347 7.537715 CATCACACAGCCAAAAACATAGATAA 58.462 34.615 0.00 0.00 0.00 1.75
1117 1351 3.922240 GCATCACACAGCCAAAAACATAG 59.078 43.478 0.00 0.00 0.00 2.23
1119 1353 2.102757 TGCATCACACAGCCAAAAACAT 59.897 40.909 0.00 0.00 0.00 2.71
1120 1354 1.479730 TGCATCACACAGCCAAAAACA 59.520 42.857 0.00 0.00 0.00 2.83
1121 1355 2.222007 TGCATCACACAGCCAAAAAC 57.778 45.000 0.00 0.00 0.00 2.43
1122 1356 3.472283 AATGCATCACACAGCCAAAAA 57.528 38.095 0.00 0.00 0.00 1.94
1123 1357 3.573538 AGTAATGCATCACACAGCCAAAA 59.426 39.130 2.05 0.00 0.00 2.44
1124 1358 3.057386 CAGTAATGCATCACACAGCCAAA 60.057 43.478 2.05 0.00 0.00 3.28
1125 1359 2.488937 CAGTAATGCATCACACAGCCAA 59.511 45.455 2.05 0.00 0.00 4.52
1126 1360 2.086094 CAGTAATGCATCACACAGCCA 58.914 47.619 2.05 0.00 0.00 4.75
1127 1361 1.202222 GCAGTAATGCATCACACAGCC 60.202 52.381 10.86 0.00 34.41 4.85
1128 1362 1.202222 GGCAGTAATGCATCACACAGC 60.202 52.381 17.97 8.52 36.33 4.40
1129 1363 1.402968 GGGCAGTAATGCATCACACAG 59.597 52.381 17.97 0.00 36.33 3.66
1144 1378 0.605319 TGACTAGCAAAACCGGGCAG 60.605 55.000 6.32 2.61 0.00 4.85
1148 1382 2.280628 GGAGATGACTAGCAAAACCGG 58.719 52.381 0.00 0.00 0.00 5.28
1151 1385 4.265073 ACCATGGAGATGACTAGCAAAAC 58.735 43.478 21.47 0.00 0.00 2.43
1157 1391 6.662865 ACAATAGACCATGGAGATGACTAG 57.337 41.667 21.47 2.12 0.00 2.57
1165 1413 3.624861 GTGAGCAACAATAGACCATGGAG 59.375 47.826 21.47 3.23 0.00 3.86
1185 1433 5.180868 CCTTGAATTGAGAGAAAGAGTGGTG 59.819 44.000 0.00 0.00 0.00 4.17
1196 1444 5.709164 ACAATCTTGGTCCTTGAATTGAGAG 59.291 40.000 11.38 0.00 0.00 3.20
1219 1467 5.570206 GTGGCAGTTAAAGCGGTAAATAAAC 59.430 40.000 0.00 0.00 0.00 2.01
1220 1468 5.474189 AGTGGCAGTTAAAGCGGTAAATAAA 59.526 36.000 0.00 0.00 0.00 1.40
1224 1472 2.853705 AGTGGCAGTTAAAGCGGTAAA 58.146 42.857 0.00 0.00 0.00 2.01
1228 1476 0.951558 ACAAGTGGCAGTTAAAGCGG 59.048 50.000 7.35 0.00 0.00 5.52
1229 1477 2.774439 AACAAGTGGCAGTTAAAGCG 57.226 45.000 7.35 0.00 0.00 4.68
1237 1485 3.181397 CAGACAAACAAACAAGTGGCAG 58.819 45.455 0.00 0.00 0.00 4.85
1238 1486 2.673610 GCAGACAAACAAACAAGTGGCA 60.674 45.455 0.00 0.00 0.00 4.92
1239 1487 1.926510 GCAGACAAACAAACAAGTGGC 59.073 47.619 0.00 0.00 0.00 5.01
1259 1543 1.061131 GTGAAGAATGGCACGACGATG 59.939 52.381 0.00 0.00 0.00 3.84
1266 1550 2.887152 ACCTCTTTGTGAAGAATGGCAC 59.113 45.455 0.00 0.00 41.19 5.01
1299 1583 2.813908 GGTGTCGTCGCCATGTCC 60.814 66.667 7.40 0.00 43.16 4.02
1300 1584 2.813908 GGGTGTCGTCGCCATGTC 60.814 66.667 14.14 0.00 45.25 3.06
1305 1590 3.644399 GAAGGAGGGTGTCGTCGCC 62.644 68.421 3.45 3.45 42.95 5.54
1310 1595 1.812686 TTCGTGGAAGGAGGGTGTCG 61.813 60.000 0.00 0.00 29.54 4.35
1314 1599 1.064825 ACAATTCGTGGAAGGAGGGT 58.935 50.000 0.00 0.00 29.54 4.34
1344 1629 2.039405 CAAGGAGCAGGAGCAGTGC 61.039 63.158 7.13 7.13 45.49 4.40
1346 1631 1.374190 CACAAGGAGCAGGAGCAGT 59.626 57.895 0.00 0.00 45.49 4.40
1359 1662 6.237728 GCAATTCACAATCATATGCACACAAG 60.238 38.462 0.00 0.00 32.80 3.16
1377 1690 2.863137 GTTTTCACGGCTTTGCAATTCA 59.137 40.909 0.00 0.00 0.00 2.57
1378 1691 3.060339 CAGTTTTCACGGCTTTGCAATTC 60.060 43.478 0.00 0.00 0.00 2.17
1380 1693 2.159114 ACAGTTTTCACGGCTTTGCAAT 60.159 40.909 0.00 0.00 0.00 3.56
1383 1696 1.199624 CACAGTTTTCACGGCTTTGC 58.800 50.000 0.00 0.00 0.00 3.68
1384 1697 1.199624 GCACAGTTTTCACGGCTTTG 58.800 50.000 0.00 0.00 0.00 2.77
1385 1698 1.102978 AGCACAGTTTTCACGGCTTT 58.897 45.000 0.00 0.00 0.00 3.51
1386 1699 0.381801 CAGCACAGTTTTCACGGCTT 59.618 50.000 0.00 0.00 30.32 4.35
1387 1700 1.447317 CCAGCACAGTTTTCACGGCT 61.447 55.000 0.00 0.00 32.15 5.52
1388 1701 1.008538 CCAGCACAGTTTTCACGGC 60.009 57.895 0.00 0.00 0.00 5.68
1389 1702 0.307760 GACCAGCACAGTTTTCACGG 59.692 55.000 0.00 0.00 0.00 4.94
1390 1703 1.261619 GAGACCAGCACAGTTTTCACG 59.738 52.381 0.00 0.00 0.00 4.35
1391 1704 1.261619 CGAGACCAGCACAGTTTTCAC 59.738 52.381 0.00 0.00 0.00 3.18
1405 1718 8.696410 TTTATTTTATTGATTTTGGCGAGACC 57.304 30.769 0.00 0.00 39.84 3.85
1428 1741 9.632638 ATGCTACTATAGTGATGTCCAAATTTT 57.367 29.630 15.90 0.00 0.00 1.82
1438 1751 8.501580 CCACAAATTCATGCTACTATAGTGATG 58.498 37.037 15.90 13.58 0.00 3.07
1440 1753 7.791029 TCCACAAATTCATGCTACTATAGTGA 58.209 34.615 15.90 0.71 0.00 3.41
1441 1754 8.613060 ATCCACAAATTCATGCTACTATAGTG 57.387 34.615 15.90 6.78 0.00 2.74
1442 1755 7.880195 GGATCCACAAATTCATGCTACTATAGT 59.120 37.037 10.87 10.87 0.00 2.12
1446 1759 5.056480 CGGATCCACAAATTCATGCTACTA 58.944 41.667 13.41 0.00 0.00 1.82
1447 1760 3.879295 CGGATCCACAAATTCATGCTACT 59.121 43.478 13.41 0.00 0.00 2.57
1448 1761 3.627577 ACGGATCCACAAATTCATGCTAC 59.372 43.478 13.41 0.00 0.00 3.58
1449 1762 3.876914 GACGGATCCACAAATTCATGCTA 59.123 43.478 13.41 0.00 0.00 3.49
1461 1784 3.319755 TGAAAGTAAACGACGGATCCAC 58.680 45.455 13.41 4.15 0.00 4.02
1472 1852 8.742554 AATTTCCGATCAACATGAAAGTAAAC 57.257 30.769 0.00 0.00 30.96 2.01
1488 1868 2.026641 CAGGGTGCATGAATTTCCGAT 58.973 47.619 0.00 0.00 0.00 4.18
1490 1870 0.457035 CCAGGGTGCATGAATTTCCG 59.543 55.000 0.00 0.00 0.00 4.30
1501 1881 4.381932 CCAATCAGTTTATTTCCAGGGTGC 60.382 45.833 0.00 0.00 0.00 5.01
1503 1883 4.772100 CACCAATCAGTTTATTTCCAGGGT 59.228 41.667 0.00 0.00 0.00 4.34
1523 1906 3.057946 GTCAAAGAAGAACAGATGCCACC 60.058 47.826 0.00 0.00 0.00 4.61
1536 1920 1.610522 CTGGTTGCCCTGTCAAAGAAG 59.389 52.381 0.00 0.00 0.00 2.85
1577 1961 1.662608 CCTCTCATCCGTCCATCCG 59.337 63.158 0.00 0.00 0.00 4.18
1645 2029 1.231958 GGCGTTGTTCCCGTGATTGA 61.232 55.000 0.00 0.00 0.00 2.57
1655 2039 1.673920 TCTTTCCTGTTGGCGTTGTTC 59.326 47.619 0.00 0.00 0.00 3.18
1664 2048 4.651778 TGGTACCTGAATCTTTCCTGTTG 58.348 43.478 14.36 0.00 0.00 3.33
1669 2053 3.954258 CCCATTGGTACCTGAATCTTTCC 59.046 47.826 14.36 0.00 0.00 3.13
1712 2096 1.202818 ACTTTCTTCCACACTCCAGCC 60.203 52.381 0.00 0.00 0.00 4.85
1757 2141 4.697756 TTGGCCCCGACTTGAGCG 62.698 66.667 0.00 0.00 0.00 5.03
1829 2213 4.406173 GCACTGCTGCTGCTGCTG 62.406 66.667 27.75 27.75 40.63 4.41
1870 2254 2.882761 CCCGATTCGTGATCACCTACTA 59.117 50.000 20.03 1.74 34.23 1.82
1925 2309 2.031097 GCTCCCAATTCCCTTCCATGG 61.031 57.143 4.97 4.97 0.00 3.66
1984 2368 4.946478 ATGAGGTAGTGATTGAGGTAGC 57.054 45.455 0.00 0.00 0.00 3.58
1988 2372 5.127845 ACACTGTATGAGGTAGTGATTGAGG 59.872 44.000 10.24 0.00 43.35 3.86
1995 2379 3.764434 ACCAGACACTGTATGAGGTAGTG 59.236 47.826 5.33 0.00 45.48 2.74
1996 2380 3.764434 CACCAGACACTGTATGAGGTAGT 59.236 47.826 5.33 0.00 32.71 2.73
1997 2381 3.429547 GCACCAGACACTGTATGAGGTAG 60.430 52.174 5.33 0.00 32.71 3.18
2006 2390 1.348696 TGATGATGCACCAGACACTGT 59.651 47.619 0.00 0.00 0.00 3.55
2047 2431 9.524496 TGCATCTTCCATAAAATCAGCTAATAT 57.476 29.630 0.00 0.00 0.00 1.28
2102 2486 2.735100 GCGCCCGTAGCTATCTGC 60.735 66.667 0.00 0.00 40.39 4.26
2113 2497 1.943693 CACAAAACAACAGCGCCCG 60.944 57.895 2.29 0.00 0.00 6.13
2129 2517 6.288294 TGCTGATATAGAACATGGTTACCAC 58.712 40.000 6.10 0.00 35.80 4.16
2165 2553 4.644103 AACATGGCATCAGACATTTAGC 57.356 40.909 0.00 0.00 42.13 3.09
2172 2560 3.622163 CAGAGAGAAACATGGCATCAGAC 59.378 47.826 0.00 0.00 0.00 3.51
2235 2623 1.019278 TTGATTCTGCGCCGACTTCC 61.019 55.000 4.18 0.00 0.00 3.46
2241 2629 1.638388 TTCTGCTTGATTCTGCGCCG 61.638 55.000 4.18 0.00 0.00 6.46
2258 2646 5.451908 TCAATCGTCTTTTCTTGCATGTTC 58.548 37.500 0.00 0.00 0.00 3.18
2260 2648 4.614535 GCTCAATCGTCTTTTCTTGCATGT 60.615 41.667 0.00 0.00 0.00 3.21
2274 2662 2.037772 AGTGGAAGAACTGCTCAATCGT 59.962 45.455 0.00 0.00 0.00 3.73
2300 2688 2.746277 ACTGGATCGTTTGGGCGC 60.746 61.111 0.00 0.00 0.00 6.53
2302 2690 0.321653 AGTCACTGGATCGTTTGGGC 60.322 55.000 0.00 0.00 0.00 5.36
2320 2708 5.844004 ACTATGCTAACCGATCCTGTAAAG 58.156 41.667 0.00 0.00 0.00 1.85
2332 2720 3.181506 GCTTGCAACAGACTATGCTAACC 60.182 47.826 12.19 0.00 42.97 2.85
2333 2721 3.181506 GGCTTGCAACAGACTATGCTAAC 60.182 47.826 12.19 2.61 42.97 2.34
2355 2743 1.199624 GGCGTGTTGCTTTTGTCAAG 58.800 50.000 0.00 0.00 45.43 3.02
2372 2760 2.424956 CAGGCTCTTTGAGTAATTGGGC 59.575 50.000 0.00 0.00 31.39 5.36
2400 2788 2.031870 AGTTCCAACAGGTTTTGAGGC 58.968 47.619 0.00 0.00 0.00 4.70
2448 2837 9.284968 CATTTACCCGATAAATACTCTTCCATT 57.715 33.333 4.83 0.00 40.82 3.16
2463 2852 1.822186 GGTGGCGCATTTACCCGAT 60.822 57.895 10.83 0.00 0.00 4.18
2466 2855 3.514362 CCGGTGGCGCATTTACCC 61.514 66.667 10.83 0.00 0.00 3.69
2484 2873 5.183713 TGTCAAATAAATCCTCCAGTGCTTG 59.816 40.000 0.00 0.00 0.00 4.01
2485 2874 5.324409 TGTCAAATAAATCCTCCAGTGCTT 58.676 37.500 0.00 0.00 0.00 3.91
2517 2906 6.233434 TGCAAAATAGAGATACATAGCCAGG 58.767 40.000 0.00 0.00 0.00 4.45
2595 2992 3.181485 CCAGGACACTACTACTAAGCAGC 60.181 52.174 0.00 0.00 0.00 5.25
2665 3062 4.739228 TGAACGTTTCATTCACATTGCAAG 59.261 37.500 4.94 0.00 34.08 4.01
2683 3080 9.485591 GTTATTATCTTGTGGTAAACATGAACG 57.514 33.333 0.00 0.00 43.79 3.95
2694 3091 4.224370 AGGACACCGTTATTATCTTGTGGT 59.776 41.667 0.00 0.00 0.00 4.16
2703 3100 7.396418 AGGAACATTTTAGGACACCGTTATTA 58.604 34.615 0.00 0.00 0.00 0.98
2711 3108 5.596845 TGCAAAAGGAACATTTTAGGACAC 58.403 37.500 0.00 0.00 31.29 3.67
2712 3109 5.860941 TGCAAAAGGAACATTTTAGGACA 57.139 34.783 0.00 0.00 31.29 4.02
2714 3111 6.418057 ACATGCAAAAGGAACATTTTAGGA 57.582 33.333 0.00 0.00 31.29 2.94
2720 3117 5.248020 TGGGATTACATGCAAAAGGAACATT 59.752 36.000 0.00 0.00 0.00 2.71
2721 3118 4.776837 TGGGATTACATGCAAAAGGAACAT 59.223 37.500 0.00 0.00 0.00 2.71
2732 3129 2.283145 AGCATCCTGGGATTACATGC 57.717 50.000 7.50 7.50 31.62 4.06
2733 3130 4.040829 TCAGTAGCATCCTGGGATTACATG 59.959 45.833 11.67 0.00 31.62 3.21
2737 3134 5.246203 GTGTATCAGTAGCATCCTGGGATTA 59.754 44.000 0.00 0.00 31.62 1.75
2738 3135 4.040952 GTGTATCAGTAGCATCCTGGGATT 59.959 45.833 0.00 0.00 31.62 3.01
2739 3136 3.580458 GTGTATCAGTAGCATCCTGGGAT 59.420 47.826 0.00 0.00 34.81 3.85
2740 3137 2.965831 GTGTATCAGTAGCATCCTGGGA 59.034 50.000 0.00 0.00 0.00 4.37
2741 3138 2.700371 TGTGTATCAGTAGCATCCTGGG 59.300 50.000 0.00 0.00 0.00 4.45
2742 3139 3.722147 GTGTGTATCAGTAGCATCCTGG 58.278 50.000 0.00 0.00 0.00 4.45
2743 3140 3.181486 ACGTGTGTATCAGTAGCATCCTG 60.181 47.826 0.00 0.00 0.00 3.86
2744 3141 3.024547 ACGTGTGTATCAGTAGCATCCT 58.975 45.455 0.00 0.00 0.00 3.24
2745 3142 3.116300 CACGTGTGTATCAGTAGCATCC 58.884 50.000 7.58 0.00 0.00 3.51
2746 3143 3.770666 ACACGTGTGTATCAGTAGCATC 58.229 45.455 22.71 0.00 42.90 3.91
2747 3144 3.868757 ACACGTGTGTATCAGTAGCAT 57.131 42.857 22.71 0.00 42.90 3.79
2748 3145 4.351131 CTACACGTGTGTATCAGTAGCA 57.649 45.455 30.83 5.31 44.15 3.49
2749 3146 3.106672 GCTACACGTGTGTATCAGTAGC 58.893 50.000 30.83 23.25 44.15 3.58
2750 3147 4.351131 TGCTACACGTGTGTATCAGTAG 57.649 45.455 30.83 17.80 44.15 2.57
2751 3148 4.439563 CCATGCTACACGTGTGTATCAGTA 60.440 45.833 30.83 18.82 42.88 2.74
2752 3149 3.511699 CATGCTACACGTGTGTATCAGT 58.488 45.455 30.83 3.69 42.88 3.41
2753 3150 2.860136 CCATGCTACACGTGTGTATCAG 59.140 50.000 30.83 19.97 42.88 2.90
2754 3151 2.232696 ACCATGCTACACGTGTGTATCA 59.767 45.455 30.83 20.72 44.15 2.15
2755 3152 2.888594 ACCATGCTACACGTGTGTATC 58.111 47.619 30.83 16.13 44.15 2.24
2756 3153 4.665833 ATACCATGCTACACGTGTGTAT 57.334 40.909 30.83 22.71 44.15 2.29
2809 3211 5.937540 TCACGTCAGTACCAATTGAATCAAT 59.062 36.000 7.12 2.07 35.39 2.57
2825 3227 6.620678 ACAATTATTTTCCCATTCACGTCAG 58.379 36.000 0.00 0.00 0.00 3.51
2830 3232 9.868277 TCATGTTACAATTATTTTCCCATTCAC 57.132 29.630 0.00 0.00 0.00 3.18
2833 3235 9.665719 GGTTCATGTTACAATTATTTTCCCATT 57.334 29.630 0.00 0.00 0.00 3.16
2837 3239 9.705290 AACAGGTTCATGTTACAATTATTTTCC 57.295 29.630 1.00 0.00 41.53 3.13
2845 3249 7.450074 TGAGTAGAACAGGTTCATGTTACAAT 58.550 34.615 14.06 0.00 43.32 2.71
2857 3261 3.779444 TCCACATCTGAGTAGAACAGGT 58.221 45.455 0.00 0.00 36.32 4.00
2861 3265 5.185249 TGGTACTTCCACATCTGAGTAGAAC 59.815 44.000 0.00 0.00 41.93 3.01
2918 3354 0.809385 TAGCAGGAGACGTACAGTGC 59.191 55.000 4.67 4.67 0.00 4.40
2919 3355 3.439293 CATTAGCAGGAGACGTACAGTG 58.561 50.000 0.00 0.00 0.00 3.66
2937 3873 8.891671 AACACTTTGATTTATTTCACTGCATT 57.108 26.923 0.00 0.00 0.00 3.56
2978 3915 3.451178 AGCGGATAACTACACCAGATGTT 59.549 43.478 0.00 0.00 43.19 2.71
2980 3917 3.735237 AGCGGATAACTACACCAGATG 57.265 47.619 0.00 0.00 0.00 2.90
2981 3918 3.451178 ACAAGCGGATAACTACACCAGAT 59.549 43.478 0.00 0.00 0.00 2.90
2982 3919 2.829720 ACAAGCGGATAACTACACCAGA 59.170 45.455 0.00 0.00 0.00 3.86
2983 3920 3.247006 ACAAGCGGATAACTACACCAG 57.753 47.619 0.00 0.00 0.00 4.00
2989 3927 4.634004 CACATTCCAACAAGCGGATAACTA 59.366 41.667 0.00 0.00 30.99 2.24
3016 3954 6.070656 TGAAGATCCTCATGTTTTGTTCCTT 58.929 36.000 0.00 0.00 0.00 3.36
3024 3962 3.209410 GCCGATGAAGATCCTCATGTTT 58.791 45.455 11.60 0.00 36.15 2.83
3027 3965 2.538512 TGCCGATGAAGATCCTCATG 57.461 50.000 11.60 4.57 36.15 3.07
3028 3966 3.409570 CAATGCCGATGAAGATCCTCAT 58.590 45.455 6.52 6.52 38.79 2.90
3029 3967 2.842457 CAATGCCGATGAAGATCCTCA 58.158 47.619 0.00 0.00 0.00 3.86
3030 3968 1.534595 GCAATGCCGATGAAGATCCTC 59.465 52.381 0.00 0.00 0.00 3.71
3031 3969 1.602311 GCAATGCCGATGAAGATCCT 58.398 50.000 0.00 0.00 0.00 3.24
3047 3994 1.511613 CTCCTCTGGGATTAGGGCAA 58.488 55.000 0.00 0.00 41.36 4.52
3049 3996 0.766288 AGCTCCTCTGGGATTAGGGC 60.766 60.000 0.00 0.00 41.36 5.19
3062 4009 4.704103 TGGTCGAGGCCAGCTCCT 62.704 66.667 5.01 0.00 39.67 3.69
3097 4044 7.633789 TCCACTCTCAAAGAAAATAGCCTATT 58.366 34.615 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.