>input_sequence_54596
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--------------------------------------------------------------------ATGGGCGAG---
---------------------------------GACGTCGGCATTGCCCAGGTAACCACTGGTCCGCCACATGCTCCCTC
TTCTCCATTCTTATTTTA---------ATCTACGAGTATGTTTTCAGAACGAATATTTCATTTATTTTATCTATGTTTTT
GGCTGTGTGATGCATTACTGCCCGGTTTTGCTA--------------GTCATCTCCATGGTCTATTGTTGCTCACCACTC
TTTCTCTCAATTCAAGGACCAAGATTGTTTATTTACCGCTTTAACTGCCACTTGT-------------------------
---------TTGTTTGTC--TGCATCGTCGTGCCATTCTTCACAAAGAGGTCTCTTCAAAGCGG-ACATGGCGACGACAC
CCTCCTTCCACGAATTGTAAAAAACGGCGCA------------------CTGCTCCTGCTCCTTGTGTGCATATG-----
-----ATTGTGAATTGCAAAGCCGTGAAAACTGTGCTGGTCTCGCCAAAATCAATAAAATAAAATTTGGACATCACTATA
GT----------AGCATGAATTTG--------------------------------------------------------
-TGGATCCGTCGTTTACTTTCATGTTGATCGGAAATTCATGCACCCTGGA---AATAAACTGATTGGTGGCATC-TGTTC
TTCTTTGACAGGGCAACCAGGTCACTAACCTGGTGTCGGCCGGATGGACGGATGAGAGGCACACGGATTACATAAGCTCC
ATGGAAGCCTCTTTCATCAACCGACTCTTCAATCACGGGAACAACGCCAACAGGAAAGATTCAGGTACCAATGGGTTCAA
GGTTCTCCAAGGTGGGGCTGGAGTGTGGAAGAAAGTCGAGTTTGCGAGGCCCGGTGCTTGCGCTCAAGTCGGGGCCAAAC
AAAGCCTGCCTGCAAACCCCTGGATCCAGCATTTCAGATCGCGTGATTGCAGCAGCAGCAGCAGCAGTGCAAGAGGTGAT
GGGGCACAAACTTTAGTAGGTGATCACGAATCGGGTATTCGGACTACCCCTGGGGGGACTCCCTTGTCCCATGGAAGGGA
ATTGGGAGCTTGCAAGGGAGAAAACCTTCTCGACCAAAATTCAGGTAGCTACCTCAATCACTACCTCATACAGTGTCTGG
TGCATCATCATACACACATATGCTCTTTTAATATTAGCTGATTTTATGGAAGATGCATACCTATGTTATCCGTAAGCTCA
TAGTAGCAGATAGCTACGGGCGCTG----TTGTTTTGTGGTAACCATGTTCTATATCAGCATCCTGCGGCGAGCTAAATG
TCTGATGCCATGTTTCTCTCTGCAGAGGTCTCTGATCAGAACTTTGCTGACGACGACGAGGCGGAAGTCGGCGCAGAATC
AAGCAGAACATGCAAGAAAAGACGATTGAGCAGTTCTTCCACTTACTGCGCCCAAACGATCCAGTGA-------------
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>chr4A_1_TraesCS4A01G004800
CTCGCCGGCGCTAGGGATTTAACTGATTCGGTTGAGTCGGGTATTATTTTTTTTGATCGGACGGCCTGCGCGGCCGTTTG
AGATGGATAAAAGGCGCCCGGGTGTAGATGCTAGTTAGGAAAGGCTTGGCCGTCGTCGTCGTCCCCCCGGTGCGGCGCAC
CGTCGCCCACGTCGACCCCGTCCCTCCGCCCGCATGTCGGCTAGCGGAAACACGGCGCGTCCACGTAAC----CGCACCG
GAAAGCACCGTCCTCGCCCGCCCGCCACAGTGTTGCGGATGAGAGTGGCCCACTGGGTAGTAGTAAAGCGCGCGCCGCTC
CGGTCCGGTCTGGTCGGTCGGTCGG---------TCTCCTCCCCTTCCCCCGTGCTCCGCT-----CCGCCTCCGCAGAT
CTTTCTGGCGGGCGGGCGGCCGGCCAGCAAATATCTGGCCC-----------------------------CGCCGCT---
-----------------------------CCACCTGTCGCC-CCGCCACGCTGGAGAAAGCACCGGCACGTAGGCGCAAA
AAGGGCGTCCAT----------TCCCTTGATATTTGCGGGCGGAGGAGAAGTACTT----------------------CC
TTCCTCCGCCCGTCCGCTTGGCTTGCTCATCCGTTCTTCGCCTGCTTCCT----------------TCCTCCGCTGCTAT
TTCTTTCGCCTCCCC----------TCCG--------------GAGAGACCACGCCGGCCGAATCCACATAAATTTCCTT
TCCGTCC---------------CGCTCGCTCGCTCGATCTGTCTTCCGTCGGGGTCGGTTCTTGGCCTGGATCCTGCGGA
ATCTCTTCTTGATTGTTTTCCGGTCGTTGGGGCTCCAAATCTCCCCCGCGCCCGTCTCCT------CCTCCACGCG--GG
CGGGCTCAATTCAAGGGGATTTGCGTCCCCCTTCCCTCCCG------TCCCTTGGATCTCCTTCCTGCCCGCCTCTCCGC
GCCACGTCCCGCAAAGGAAATCCGCGGGGAG-------ATCTTTCCTGTTGTCTCAGGCCAGCACAGGCGAATCCCTTCC
TCGGGGGCCTCTGCGTGTCCGCCCCCCTTGTCGCCTCCTTCTCGTCCTGACAAGTACGTAAGTATCCGATGGGCGAG---
---------------------------------GACGTCGGCATTGCCCAGGTAACCACTGGTCCGCCACATGCTCCCTC
TTCTCCATTCTTATTTTA---------ATCTACGAGTATGTTTTCAGAACGAATATTTCATTTATTTTATCTATGTTTTT
GGCTGTGTGATGCATTACTGCCCGGTTTTGCTA--------------GTCATCTCCATGGTCTATTGTTGCTCACCACTC
TTTCTCTCAATTCAAGGACCAAGATTGTTTATTTACCGCTTTAACTGCCACTTGT-------------------------
---------TTGTTTGTC--TGCATCGTCGTGCCATTCTTCACAAAGAGGTCTCTTCAAAGCGG-ACATGGCGACGACAC
CCTCCTTCCACGAATTGTAAAAAACGGCGCA------------------CTGCTCCTGCTCCTTGTGTGCATATG-----
-----ATTGTGAATTGCAAAGCCGTGAAAACTGTGCTGGTCTCGCCAAAATCAATAAAATAAAATTTGGACATCACTATA
GT----------AGCATGAATTTG--------------------------------------------------------
-TGGATCCGTCGTTTACTTTCATGTTGATCGGAAATTCATGCACCCTGGA---AATAAACTGATTGGTGGCATC-TGTTC
TTCTTTGACAGGGCAACCAGGTCACTAACCTGGTGTCGGCCGGATGGACGGATGAGAGGCACACGGATTACATAAGCTCC
ATGGAAGCCTCTTTCATCAACCGACTCTTCAATCACGGGAACAACGCCAACAGGAAAGATTCAGGTACCAATGGGTTCAA
GGTTCTCCAAGGTGGGGCTGGAGTGTGGAAGAAAGTCGAGTTTGCGAGGCCCGGTGCTTGCGCTCAAGTCGGGGCCAAAC
AAAGCCTGCCTGCAAACCCCTGGATCCAGCATTTCAGATCGCGTGATTGCAGCAGCAGCAGCAGCAGTGCAAGAGGTGAT
GGGGCACAAACTTTAGTAGGTGATCACGAATCGGGTATTCGGACTACCCCTGGGGGGACTCCCTTGTCCCATGGAAGGGA
ATTGGGAGCTTGCAAGGGAGAAAACCTTCTCGACCAAAATTCAGGTAGCTACCTCAATCACTACCTCATACAGTGTCTGG
TGCATCATCATACACACATATGCTCTTTTAATATTAGCTGATTTTATGGAAGATGCATACCTATGTTATCCGTAAGCTCA
TAGTAGCAGATAGCTACGGGCGCTG----TTGTTTTGTGGTAACCATGTTCTATATCAGCATCCTGCGGCGAGCTAAATG
TCTGATGCCATGTTTCTCTCTGCAGAGGTCTCTGATCAGAACTTTGCTGACGACGACGAGGCGGAAGTCGGCGCAGAATC
AAGCAGAACATGCAAGAAAAGACGATTGAGCAGTTCTTCCACTTACTGCGCCCAAACGATCCAGTGACTTTACAGGATCG
GTTAGCATAGTCTGTTGCAAGCCTTGACAAAAGCAACACGCCCAATTACTCAAAGAGCCTGCTTGCTGCCTCAAAACCTG
TTGGAACTTGGAAGCAAGGATGCTCTGAAGTAAA-GAATGGAAGAGTATTTATCGGGTAAATGCGCCACCGGCAAGCACT
GGAGGATTTATTTGACAGATTAGATCCTGGCTATGTATCTCTATTTTGCAGTTA-AAGTCGATTGTGTGG-------TAG
TGCCCCATTATGAGGAACAACAGGCTCACTCGCTGCTTAGTAGTAGTGTCCTGGTAGATAGTAATATTGTTTTGTTTTAC
GGATGTAATGAAATGTTGTTGCTTGCAATGTGAATGAAACGTTCATGTTTACCACAAGATAATAACGGTGTCCTAAAATG
TTCCTTTTGCATGTAATCCCAGGATGCTACTGATACACACGT-----GTAGCATGGTATAAAACCACAGATCAAATTGAC
AGATGATAACATTGATTCAATTGGTACTGACGTGAATGGG--AAAATAATTGTAACATGAACCTGTTCTACTCA---GAT
GTGGAAGTACCAACCAAATCTG------------------------TCCCTTTTTTTT-----CCTTCTGGCCGCACT--
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------------------GTACGTCTCCTGCTAATGCAGTGAAATAAATCAAAGTG-TTTGGCTTTGTGGAAAAAACATC
-TGGTGTAGTTATCCGCTTGTTGGAATGTGTGGAAGGAACAAAACATGAGGATCT---------TCATCGGCATTGCCCT
AATCCCAGAGGAGCTGGCCTCGACCACACATGAAAGCATCCAAAATAGGCTATTTTCTTTGAGAGTGGA-TTTGCTCCCG
A--------GAGCCCTTTTTAGAAAATATATATATCAAATATCAAATTTTAAAA-TTCAAAAAAAAAATCTGAAAAAATA
CACT--TGAATATAGAGATGTATATTACATTTCTGTAGAATTTCA-T-----------------------------GATG
AAATATGCTATGGTGTGAGCTGCACATGATTTAATTTTTGTGTAGTTTTCACCAAAGCATATACATCC------------
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>chr4D_118
--------------------------------------------------------------------------------
-------------------------------------GGAAAGCATTGGCCGTCCTCGTCGACCCCCCGGTGCGGTGCAC
CGTCGCCCACGTCGACCCGT---------CCGCATGTCGGCTAGCGAAAACACGGCGCGTCCACGTAAC----CGCACGG
GAAAGCTCTGGCGT----CGCCACAGTGT---TTGCAGATGAGAGTGGCCCAGTGGGTAGTA---AAGCGCACGCCGACC
CTTCCCTCCCTGGCCGCTCTG------------CTCTCCTCTCCTTCCCCCGTGCTCCGCTCCGCCCCGCCTCCGCAGAT
CTTTCTGGCA-----GG---CGGCCAACAAATATCTCGCCC-----------------------------CGCGCGGCCG
CCAGATATTTCCGTCCCCGCGCCGCGCCGCCACCTGTCGCCTCCGCCACGCTGGA-AAAGCGCCGGCACGTAGGCGCAAA
AAGGGCGTCCGT----------TCCCTTGATATTTGCGGGCGGAGGAGAAATACTTGCGTCCCGTCCCGTGCTTCCTTCC
TTCCTCCGCCCGTCCGCTTGGCTTGCTCATCCATTCTTTGCCTGCTT-------------------------GCTCCTAT
TTCTTTCCCCTCCCC----------TCCTCCCGTGCCGTCCGAGAGAGAGCACGCCGGCCGAATTCCACGGATCCTCGCT
CCTT--CCCGCCACCGTTTGCTCGCTCGCTCGCTCGATCTGTCTTCCGTGGGGGTCGGTTCTTGGCCCGGATCTTCTCCG
-TCTCTTCTTGATTGTTTTCCGGTCGTTGGGGCTCCAAATCTCCTCCGCGCCCGTCTCTTCTCCGGCCTCCACGCG--GG
CGGGCTCAATTCAAGGGGATTTGCGTCTCCCTTGCCCCCCG------TCCCTTGGATCTTCTTCCTGCCCGCCTCTCCGC
GCCACATCTCCGCAAGGAAATCCGCGGGGAAGAGATCCATCTTTC---TAGTTTCAGGGAAGCAGAGACGAATCCGTTCC
TCGGGGGCCTCTGCCTGTCCGTCCCCCTTGTCGGTCCCTTCTTCTCTTGCC--------AAGTATCAGATGGGCGAGGTG
TACCTGGATCGCTCGGTCAAGCCGGAGCCGGCAGACGTCGGCATTGCCCAGGT----------CCGCCACATGTT-CCTC
TTCTCCAGTTTTATTTTATTTATTTATATGTACTAGTATG-TTTTAGAACGAATATTTTATTTTATGTATGT--------
---TGTGTGATGCATTATTGCTCCATTTTGTTA--------------GTCATTTGCATGGTCTGTTGTTGCTTACCACTC
TTTTTCTCCATCCAAGGACCAAGAT----TAACTAGTGCTTTAATCACCACTTGT-------------------------
---------TACTTGTCTGATGAATTGTCATGCCATTGTTCCCAAAGAGGTCTCTTCCCTTCAAAACATAGCGAGGACGC
CCTCCTTCCACAAATTGAG-AAAACGGCACG------------------GCGCCCCTGCTCGTTGTGTGCATATAATAAT
TGTGAATTGCAAGTCA--------TGAAAACAGCACTAATCTTGCCAAAATCAATAAAATGAA--TTTGGAAATGCTACT
AGTGTGCCCTTGAGCATGGATTTC--------------------------------------------------------
-TGGATCCGCCCTTTACTTTCATGTTGTC--GAAAATCATACGCCCTGGA---AATAAACTGATTAGCGGCAT-ATGCTG
TTCTTTCACAGGGTAACCAGGTCACTACCTTGATGTCGGCGGGATGGACGGACGAGAGGCACACGGATTACATAAGCTCC
ATGGAAGCTTCTTTCATCAAGCGACTCTACAATCACGGTAACAACGTGAACAAGAAAGATCCAGGTACCACTGGGTTCAA
GGTTCTCCAAGGTGGAGCTGGAGTGTGGAAGAAAGTCGAGTTTGAGAGGCCCAATGCTTGTGCTCAAGTCGGGGCCAAAC
AAAACCTGCCTGCAAACCCCTGGATTCAGCATTTCAGATCGCGTGATT---------GCAGCAGCAGTGCAAGAGGTGTT
GGGGCACAAACTTCAGTGGGTGATCACGAATCCGGTATCCGTACTGTCCCTGGGAGCACTCCGTTGTCACATGGAAGGGA
ATTGGGAGCTTGCAAGGGAGAAAACCTTCTCGATGAAAATACAGGTAACTAGTTCAAT---TACCTCATCCAGTGTCTGG
TGCATCATCATATACACATAGCTGATTGTGCTATAGCTCTAAGATAA------------------TTATCTGTAAGCTCA
---TAACATATATATAGTTAAAGATGCTATTGTCTTATGTTAACCATGTGCAAAAACAGCATCCTGCAGCGAACTAAATT
TCTGATGCCATGTTTCTCTCTGCAGAGGTCTCTGATCAGAACTTTGCTGACGACGACGAGGCAGAAGTTGGCGCAGAATC
AAGCAAAGCATGCAAGAAAAGGCGATTGAGCAGTTCTTCCACTTACTTCACCCAAATGATCCAGTGAATT-----GATCA
ATTAGCATAGTCTGTTGCAATCGTTGACAAAAGCAACACACCCAATTACTCAAAGAGCCTGCTTGCTACCTCAAAACCTG
TTGGAACTTGGAAGCAAGGATGCTCTGAAGTAAAAGCATGGAAGAGTATTTCTC-GGTAAATGCGCCACCGGTGAGCACT
GGAGGATTTATTTGACAGATTAGATTCTGGCAATGTATCTCTATTTTGCAGTTA-AAGTCGATCGTGTGG-------TAG
TGCCGCATTATGAGGAACAACAGGCTCACTCACTGCTTAGTAGTAGTATCGTGGTAGATAGTAATATTGTTTTGTTTTAC
GGATGTAATGAAATGTTGTTGTTTGCAATGTGAATGAAATGTTCATGTTTGCCACAAGACCATAACG--GCCCTAATTTG
TTCCTTTTAGATGC-------------------TACACACAT-----GTAGCATGGTATAAAACCACATATCAAATTGAC
AGCTGATAACGTTGATTCAATTGGTAT---------------AAAATACTTGTAACATGATCCTCTACTACTCAAGAGAT
GTGGAA--------------------GAGCAAAATGCCCAGTTGTTTGTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGTACGTCTCCTGCTTATGCAGTGCAATAAATCAAAGTTTTTTGGTTTTGTTGAAAAGAACAT
TTGGTGCAGTTATCCGCTTGTTGGAATGTGTGGTAGGAACATAAACATGGAGGATCTTCATCGCTCATCTGCAATCCCCT
AATCCCCGGGGAGCTGGCCTCGACCACACATGAAAGCATCCAACATAGGCTATTTTCTTTGTTCCCGA-----GCTCCAT
G--------GAGCCCTTTTTTGAAGAAA---AACAATAATATTCGAAAATCAAGTTTAGAAAATAAATTCTGAAAACACA
CACAAATGAATATAGAGACGTATACTACATTTCTATAAAATTTCA-TGATGAAATATAATTTCTGTAAAATTTGATGATG
GGATACACTTTGGTGTGAGATGCGCATGATTTTTTTTGTGTGTAGCTTTCACGAAAACATATCCCTATATTCATGTGTAT
TTTTCAAAAAAATTGGATCTGCAAAATATGATTTTTTTTTTGTATGAAAAAAACTAACATCCACAGGTGTGGCATCTTGC
ACATCGCCCACATGCCTCCTTTACTACTCATTTTGCCACATGTGAACAGATGACATCAGCGGGCTTTTTTTGGTTTTCGG
CTTAAAAGTGTTTTATCTCCTAATTAAAAAATTGAATTAAAAATCCGTTTTCACCATTAAATCCGTCTCGACGAGATCTT
CAAAACTGGAATGAGCGAAATGTTTTATCTCCTAATTAAAAATTGAATTAAAAATCCGTTTTCACCACCAAATCTGGAAT
GAGCGAAATGCCCAATTGTTTGTTATGTCCCTTGTTTTGTTCTTCTGGCCGGACTGTACGTCTCCTGCTAATGCAGTGAA
GTAAATTGAAGTTTTTGGCTTTGTGGAAAAAACATCTGGTGTAGTTATCCCCTTGTTCGTTTTTTTGGATTGCTTGCCAG
GCTTGCCGCCTGGTAGTTATCCGCTTGTTGGAATGTGTGGAAGGAACAAAACATGAGGATCTTCATCGGCATTGCCCTAA
TCCCA
>chr4B_137
CGTCGT--------------------------------------------------------------------------
---------------------------------------------------------------CCCCCGGTGCGGTGCAC
CGTCGCCCACGTCGCCCCGTCCG-TCCGCCCGCATGTCGGCTAGCGAAAACACGGCGCGTCCACGTAGCCAGTCGCGCGG
GAGAGCTCCGGCCT----CGCCCGCCACAGTGTCGCGGATGAGAGTGGCCCACTGGGCAGTA---AAGCGCACGCCGATC
CCCTCCGCTCTGGTCTGGTCCGGCCTGGTCGGCCTCCCCTTCCCTTGCCCCGT----------GCCCCCGCCCCGCAGAT
CTTTGTGGCGGGCGGGG---CGGCCAACAAATATCTGGCGGCGGGGCGAGATATTTCCACCCCCGCGCCGCGCCACC---
-----------------------------CCACCTGTCGCC-CCGCCACGCTGGA-AAAGCGCCGGCACGTAGGCGCAAA
AAGGGCGTCCATTCTTTGCCTCTCCCCTGATATTTGCGGGCGGAGGAGAAATACTTCCTTCC------------------
----TCCGCCCGTCCGCTTGGCTTGCTCATCCATTCTTTGCCTGCTTCCTTCCTCCCTCCCTCCGCTCCGCCGCTGCTAT
TTCTCTCCCCTCCCCTCCCGTCCCGTCCG--------------GAGAGACCACGCCGGCCGAATCCCCATAGATTTCCAT
CCCATCCCCGCCACGGCTCGCTCGCTCGCTCGATCGATCTGCCCTCCGTCGGGGTCGGTTCTTGGCCTGGATCCTGCGGA
ATCTCTTCTTGATTGTTTTCCGGTTGTTGGGGTTCCAAATCTCTTCCGCGCCGGTCTCCT------CCCCGACCTCCAGG
CGGGCTCAATTCAAGGGGATTTGCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTGGATCTCCTTCC----CGCCTCTCCGC
GCCACATCTCCCAAAGGAAATCCGCGGGGAG-------ATCTTTC---TTGTCTCAGGCCAACACAGGCGAATCCGTTCC
TCGGGGTCCTCTGCCTGTCCATCCCCCTTGTCGGGCTCCTTC--TCCTGACAAGTAGA-----ATCAGATGGGCGAGGTG
TACCTGGATCGCTCAGTCAAGCCGGAGCCAGCGGACGTCGGCATTGCCCAGGTAACCACTGGTCCGCCACATGTT-CCCT
CTCTCCATTTTTATTATTTTATCTATCTAGCAG-----------------------------------------------
---TGTGTGATGCATGATTGCTCGATTTTGTTAAGAAATAATATCGAGTAATTTCCATGGTCCACTGTTGCTTACCACTC
TTCTTCTCAATTCAAGGACCAATATTACTTACTATGTTCATAACAGCAAGGCCAAGAACAAAGGAATACCCTAAATGCTT
TAACACCCGTTGTTTGTC--TGAACCGTCACGCCATTGTTCGGAAAGAGGTCTCTTCAAAACATAGT-------------
--TCCTTCCAGAAATTAAAAATAAAAAAAGCTGTGCGCTGCTCCTGCTCCTGCTCCTGCTCGTTATGTGCATATG-----
-----ATTGCAAGTTA--------CGAAAACAGCACCAGTCTCGCCAAATGGCTAAAT---AAATTTGGAAAATGCTACC
ACTGTGGCCTTGAGCATGAATTACCGAAAAAGGCTTCAGCCCCGCTTTATATATAAAGCACAGATCCTTGAGCATGAATT
TTGGATCCCTGCTTTACTTTCATCTTGTTAGCAGATTTCTACCCCTGGAAATTAATAAACTGATTAGTGCCACCATGTTG
TTCTTTGACAGGGCAACCAGGTTACTAACCTGATGTCGGCGGGATGGACGGATGAGAGGCACACGGATTACATAAGCTCC
ATGGAAGCCTCTTTCATCAACCGACTCTACAATCAGGGACACAACGCGAACAAGAAAGATCCAGGTACCAATGGGTTCAA
GGTTCTCCAAGGTGGAGCTGGAGTGTGGAAGAAAGTCGAGTTTGAGAGGCCCAATGCTTGTGCTCAAGTCGGGGCCAAAC
AAAGCCTGCCTGCAAACCCCTGGATCCAGCATTTCAGATCGCGTGATTGC---AGCAGCAGCAGCAGTGCAAGAGGTGAT
GGGGCACAAACTTCAGTAGGCGATCACGAATCGGGTATCCGGACTGTCCCTGGGAGCACTCCGTTGTCACACGGAAGGGA
ATTGGGAACTTGCAAGGGAGAAAGCCTTCTCGATGAAAATTCAGGTACCTAGCTCAAT---TAGTTCCTTTAATCT----
---------------------------------TTAGCTGATTTTATGGAAGATGCATACCTATGTTATCCGTAAGCTCA
---TAACAGATAGCTATGGGCGCTG----TTGTTTTATGGTAACCATGTTCTATATCAGCATCCTGCGGTGAACAAAATT
TCTGATGCCATGTTTCTCTCTGCAGAGGTCTCTGATCAGAACTTTGCTGACGACAACGAGGCAGAAGTTGGCGCAGAATC
AAGCAAAGCATGCAAGAAAAGGAGATTGAGCAGTTCTTCCACTTACTTCACTCAAACGATCCAGTGAGTTTACAGGATCA
ATTAGCATAGTCTGTTGCAAGCGTTGACAAAAGCAACACACCCAATTACTCAAAGAGCCTGCTTGCTACCTCAAAACCTG
TTGGAACTTGGAAGCAAGGATGCTCTGAAGTAAA-GCATGGAAGAGTATTTCTC-GGTAAATGCGCCACCGGTGAGCACT
GGAGGGTTTGTTA-ACAGATTAGATTCTGGTTATGTATCTCTATTTTGCAGTTAAAAGTCGATTGTGTGGTCCGCTCTAG
TGCCCCATTATGAGGAACAACAGGCTCACTCACTGCTTAGTAGTGGTATCGTGGTAGATAGTAATATTGTTTCATTTTAC
GGATGTAATGAAATGTT---GTTTGCAATGTGAATGAAATGTTCATGTTTGCCACAAGACAAT-----------------
-------TAGATGC-------------------TACACACATGTGGAGTAGCATGGTATAAAACCACATATCAAATTGAC
AGCTGATAACGCTGATTCAATTGGTATTGACATGGATGAAAAAAAATACTTGTAACATGATCCTCTTCTACTCAAAAGAT
GTGGAAGTACCAACCAGATCTGGAACGAGCGAAATGCCCGGTTGTTTCCCTTTTTTTTTGGGCCCTTCTGGCC--ACT--
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------------------GTACGTCTCCTGCTTATGCAGTGCAATAAATCAAAGTTTTTGGAG-TTGTTGAAAAGAACAT
TTGGTGCAGTTATCCGCTTGCTGGAATGTGTGGTAGGAACATAAACATGGAGGATCTTCATCGCTCATCTGCAATCCCCT
AATCCCGGGGGAGC-GGCCTCGACCACACATGAAAGCATCCAACATAGGCTATTTTCTTTGAGAGTGGAATTTGCTCCCG
AGTTACATGGAGCCCTTTTTAGGAAAAA---ATATCAAATATCAAATTTTAAAGTTTG--AAAAAAAATCTGGAAAAATA
CACT--TGAATATAGAGATGTATATAACATTTCTGTAGAATCTCAGT-----------------------------GATG
AAATATGCTATGGTGTGAGCTGCACATGATTTAATTTTTGTGTAGCTTTCACCAAGGCATATACTCC-------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS---------S------S-------------S----
------------------SSS-SS----------------------S-------------------------------S-
------S---S---SSSS--------------------------------------------SSS------S-----S--
-SS----S-----------S-SSSS-------------------------------------------------------
----------------SSSS------S-----------------------------------------------S-S---
-------------------------------------------------------S-----S------------------
--------------------------------------------------S-----------------------------
--------------------------------S-----S------------------------------S----------
-------S----------------------------------------------------------S-----------S-
S--S----------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
---------------------------S----------------------------------------------------
-----S--S-S----------------------------------SSS---------------------------S----
--------------S------S-----------SSS------SS------------SSS-------S-------------
-------------------------------------------------------------------------S-S----
---------S-------------------S---S------S---S-------------S----SS-S---S-SSSSSSSS
SSS--------------S---S--S-----S---------------------S-------------------S-------
---S----------------------SS---S---SS-------SSS---------------------------------
----------------------S------S-------S---S------------------S-SS-----S----S---S-
-----------S-----S----------S-S------------------------------S------------------
---------SS-S--SSSSSSSSS-------S-SS--S----------------------S---------S-SSS---SS
SS---------------------S--------------------------------------------------------
-----------S---------------S-S----------S-S----------------------S-------------S
--------------------------------S-------S---------------------------------------
----------------------------S---------S--------S----S-------S-------------------
---------------S----------------------------S-------SS------S-------------------
--------------------------------------------------SSS---------------------------
-------------S------------------------S------SS-------S-S-----S-----S-----------
---------------------------------SS------------S---S------SSS--------S----------
------------S-------SSSSS--S-SS-------------------------------------------------
SSS--S----------S-------------------S-----------------------------------S------S
--------------------------------------------------------------S-----S-----------
-----S-S-------------S-------------------------S-S-----------------S-----------S
S---------------------S----------------S---------------------------S------------
------------------------------------S--------------S--S-----------------SS------
-------------------------S------------------------------------------------------
-------------------------------S---------------S--S-----------------------------
---------------------S-----------------S----------S--------S-------SS-S-----SS--
--------SS---SSSSSSSSSSSSSSSSSSSS-------S---------------------------S-----------
--S-------S---------------S----S--S---SS--------S-----------S---S---------------
----------------S--------------------------------------------------------SS-----
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--------------------------------S--------S-------------S------S-----S-----S-SSSS
------S--------------------------S-------S--SSSSS-SSSS---------------S---S-S----
------S-S----------------------------------S------------------------------------
--------------------------S-SSS----------------------S---SS---------------------
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---------------------------------------------S------------------S--S------------
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>forward_24
----CCGGCGCTAGGGATTTAACT--------------------------------------------------------
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>reverse_1702
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---------------------CCGTGAAAACTGTGCTGGTC---------------------------------------
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>forward_41
---------------------ACTGATTCGGTTGAGTCGGG---------------------------------------
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>reverse_1870
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-----------------------------CGGAAATTCATGCACCCTGG-------------------------------
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>forward_42
----------------------CTGATTCGGTTGAGTCGGGT--------------------------------------
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>reverse_2096
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GGCTGGAGTGTGGAAGAAAGT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>forward_2039
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ACCGACTCTTCAATCACGGG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>reverse_3996
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GCCCT
AATCCCAGAGGAGCT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
