Multiple sequence alignment - TraesCS3D01G543000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G543000 chr3D 100.000 5511 0 0 1 5511 613606271 613611781 0.000000e+00 10178
1 TraesCS3D01G543000 chr3D 87.151 179 22 1 187 364 19063570 19063392 9.360000e-48 202
2 TraesCS3D01G543000 chr3A 97.371 1940 42 5 2782 4718 749236723 749238656 0.000000e+00 3291
3 TraesCS3D01G543000 chr3A 97.514 1086 22 2 1701 2785 749235620 749236701 0.000000e+00 1851
4 TraesCS3D01G543000 chr3A 94.417 806 40 4 1 806 749234240 749235040 0.000000e+00 1234
5 TraesCS3D01G543000 chr3A 93.671 632 33 2 4880 5511 749238655 749239279 0.000000e+00 939
6 TraesCS3D01G543000 chr3A 94.755 591 20 5 861 1449 749235041 749235622 0.000000e+00 909
7 TraesCS3D01G543000 chr3A 94.706 170 9 0 4717 4886 649828309 649828478 1.180000e-66 265
8 TraesCS3D01G543000 chr1B 85.141 996 126 14 2782 3762 659361623 659360635 0.000000e+00 1000
9 TraesCS3D01G543000 chr1B 87.284 810 80 8 1998 2785 659362453 659361645 0.000000e+00 904
10 TraesCS3D01G543000 chr3B 90.134 598 53 3 1998 2589 823088123 823087526 0.000000e+00 773
11 TraesCS3D01G543000 chr3B 79.037 644 115 9 2896 3526 823087183 823086547 1.840000e-114 424
12 TraesCS3D01G543000 chr1D 97.576 165 4 0 4717 4881 18549188 18549352 3.250000e-72 283
13 TraesCS3D01G543000 chr5D 96.988 166 5 0 4717 4882 488871683 488871848 4.200000e-71 279
14 TraesCS3D01G543000 chr5D 96.386 166 6 0 4717 4882 361648504 361648669 1.960000e-69 274
15 TraesCS3D01G543000 chr7B 95.266 169 8 0 4714 4882 595442061 595441893 9.100000e-68 268
16 TraesCS3D01G543000 chr7B 88.398 181 17 3 187 363 540063379 540063199 1.200000e-51 215
17 TraesCS3D01G543000 chr5A 95.266 169 8 0 4716 4884 458199043 458198875 9.100000e-68 268
18 TraesCS3D01G543000 chr5A 93.143 175 12 0 4713 4887 382566634 382566808 1.970000e-64 257
19 TraesCS3D01G543000 chr5A 86.127 173 19 5 193 363 568679949 568680118 1.220000e-41 182
20 TraesCS3D01G543000 chrUn 95.181 166 8 0 4717 4882 382102281 382102446 4.230000e-66 263
21 TraesCS3D01G543000 chr7D 94.186 172 8 1 4710 4881 235573274 235573443 1.520000e-65 261
22 TraesCS3D01G543000 chr7D 88.398 181 17 3 187 363 199606956 199607136 1.200000e-51 215
23 TraesCS3D01G543000 chr7D 88.043 184 18 3 187 366 485106640 485106457 1.200000e-51 215
24 TraesCS3D01G543000 chr7D 88.398 181 17 3 187 363 511228192 511228012 1.200000e-51 215
25 TraesCS3D01G543000 chr7D 85.876 177 21 1 9 185 184184968 184184796 9.430000e-43 185
26 TraesCS3D01G543000 chr2A 88.272 162 17 2 205 364 194713297 194713136 5.630000e-45 193
27 TraesCS3D01G543000 chr7A 84.783 184 24 4 187 366 150586938 150586755 1.220000e-41 182
28 TraesCS3D01G543000 chr7A 85.246 122 17 1 74 195 322239934 322239814 2.080000e-24 124
29 TraesCS3D01G543000 chr4A 82.081 173 21 6 819 985 685373454 685373622 7.440000e-29 139
30 TraesCS3D01G543000 chr4D 83.065 124 13 8 777 894 446907373 446907494 7.550000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G543000 chr3D 613606271 613611781 5510 False 10178.0 10178 100.0000 1 5511 1 chr3D.!!$F1 5510
1 TraesCS3D01G543000 chr3A 749234240 749239279 5039 False 1644.8 3291 95.5456 1 5511 5 chr3A.!!$F2 5510
2 TraesCS3D01G543000 chr1B 659360635 659362453 1818 True 952.0 1000 86.2125 1998 3762 2 chr1B.!!$R1 1764
3 TraesCS3D01G543000 chr3B 823086547 823088123 1576 True 598.5 773 84.5855 1998 3526 2 chr3B.!!$R1 1528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 817 0.179034 CTGAATGGCAGGTCCTAGGC 60.179 60.0 2.96 0.00 41.07 3.93 F
1286 1289 0.480252 AAGCAAGAGGACCTTTGGCT 59.520 50.0 8.15 8.15 36.16 4.75 F
2802 2885 0.171455 TGTTGCAACGGCGTTTCTTT 59.829 45.0 24.49 0.00 45.35 2.52 F
3493 3604 2.414559 GGCAATCATGTTCTGTTGACCG 60.415 50.0 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2793 2876 0.039527 ATGCGAACCCAAAGAAACGC 60.040 50.00 0.00 0.00 44.95 4.84 R
3066 3168 3.818210 TGTCGCCAGAAATATGTGTTGTT 59.182 39.13 0.00 0.00 0.00 2.83 R
3843 3963 0.537143 AATGTCTTGCTTCCCGTGCA 60.537 50.00 0.00 0.00 38.80 4.57 R
5155 5278 0.249120 CCATAGTCAAGCGGTGGACA 59.751 55.00 23.37 10.32 36.50 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.039363 GCCATATAACATGGTAAATGGGCTTTA 60.039 37.037 15.06 0.00 41.17 1.85
51 52 8.522830 CCATATAACATGGTAAATGGGCTTTAG 58.477 37.037 0.00 0.00 34.56 1.85
57 58 3.245443 TGGTAAATGGGCTTTAGGCTGAA 60.245 43.478 0.00 0.00 41.46 3.02
71 72 3.679389 AGGCTGAAAGTAATGGTGTCTG 58.321 45.455 0.00 0.00 35.30 3.51
72 73 2.749621 GGCTGAAAGTAATGGTGTCTGG 59.250 50.000 0.00 0.00 35.30 3.86
73 74 3.412386 GCTGAAAGTAATGGTGTCTGGT 58.588 45.455 0.00 0.00 35.30 4.00
74 75 3.189287 GCTGAAAGTAATGGTGTCTGGTG 59.811 47.826 0.00 0.00 35.30 4.17
102 103 4.336889 TTTAGCATGCGCCTAATAGAGT 57.663 40.909 13.01 0.00 39.83 3.24
107 108 2.820059 TGCGCCTAATAGAGTGATGG 57.180 50.000 4.18 0.00 0.00 3.51
110 111 2.613977 GCGCCTAATAGAGTGATGGCAT 60.614 50.000 0.00 0.00 40.27 4.40
120 121 3.575256 AGAGTGATGGCATTTTTGAGCAA 59.425 39.130 0.00 0.00 0.00 3.91
145 146 2.568623 ACTCCTAGTGGCAAAACTGG 57.431 50.000 0.00 0.00 0.00 4.00
153 154 1.607148 GTGGCAAAACTGGGTAGTGAC 59.393 52.381 0.00 0.00 37.19 3.67
185 186 8.920174 AGTAGTGGCATAAATAATAAAAACCCC 58.080 33.333 0.00 0.00 0.00 4.95
302 303 7.088272 AGTGTTTTCAGTTAACTTGGTCAAAC 58.912 34.615 5.07 10.62 0.00 2.93
421 422 6.243811 ACACTCTTTCTACGTGTCTTCTAG 57.756 41.667 0.00 0.00 37.30 2.43
425 426 5.700846 TCTTTCTACGTGTCTTCTAGCTTG 58.299 41.667 0.00 0.00 0.00 4.01
544 545 5.892348 AGTCCAACAACTCCCTTATTCATT 58.108 37.500 0.00 0.00 0.00 2.57
549 550 9.148879 TCCAACAACTCCCTTATTCATTAAAAA 57.851 29.630 0.00 0.00 0.00 1.94
637 638 3.655384 AGGGGATCCTGTAAACTAGGTC 58.345 50.000 12.58 0.00 42.98 3.85
639 640 3.632906 GGGGATCCTGTAAACTAGGTCCT 60.633 52.174 12.58 0.00 36.54 3.85
661 662 1.840224 TTTCCCCTCGGGTTTACGGG 61.840 60.000 0.55 0.00 44.74 5.28
673 674 4.639334 GGGTTTACGGGAAGATAATCCTC 58.361 47.826 0.00 0.00 39.57 3.71
714 715 6.436261 GGCTAGAAACAACCTGAAACTTTAC 58.564 40.000 0.00 0.00 0.00 2.01
727 728 1.672356 CTTTACTGTGCGCCCTGCT 60.672 57.895 4.18 0.00 46.63 4.24
729 730 3.899981 TTACTGTGCGCCCTGCTGG 62.900 63.158 4.18 1.89 46.63 4.85
734 735 4.269523 TGCGCCCTGCTGGAAAGT 62.270 61.111 11.88 0.00 46.63 2.66
750 751 2.672996 GTTGACATGCCGCCACCT 60.673 61.111 0.00 0.00 0.00 4.00
806 807 0.179059 ACACGTGTCACTGAATGGCA 60.179 50.000 17.22 0.00 41.96 4.92
807 808 0.514255 CACGTGTCACTGAATGGCAG 59.486 55.000 7.58 0.00 45.83 4.85
808 809 0.603707 ACGTGTCACTGAATGGCAGG 60.604 55.000 0.65 0.04 45.83 4.85
809 810 0.603707 CGTGTCACTGAATGGCAGGT 60.604 55.000 0.65 0.00 45.83 4.00
810 811 1.160137 GTGTCACTGAATGGCAGGTC 58.840 55.000 0.00 0.00 45.83 3.85
811 812 2.215704 GTGTCACTGAATGGCAGGTCC 61.216 57.143 0.00 0.00 45.83 4.46
812 813 4.519958 GTGTCACTGAATGGCAGGTCCT 62.520 54.545 0.00 0.00 45.83 3.85
813 814 5.193269 GTGTCACTGAATGGCAGGTCCTA 62.193 52.174 0.00 0.00 45.83 2.94
814 815 6.946173 GTGTCACTGAATGGCAGGTCCTAG 62.946 54.167 0.00 0.00 45.83 3.02
816 817 0.179034 CTGAATGGCAGGTCCTAGGC 60.179 60.000 2.96 0.00 41.07 3.93
820 821 3.335711 GGCAGGTCCTAGGCCATT 58.664 61.111 20.25 2.50 46.92 3.16
821 822 2.539983 GGCAGGTCCTAGGCCATTA 58.460 57.895 20.25 0.00 46.92 1.90
822 823 1.068121 GGCAGGTCCTAGGCCATTAT 58.932 55.000 20.25 1.58 46.92 1.28
823 824 1.003696 GGCAGGTCCTAGGCCATTATC 59.996 57.143 20.25 0.00 46.92 1.75
824 825 1.981495 GCAGGTCCTAGGCCATTATCT 59.019 52.381 20.25 0.10 0.00 1.98
825 826 3.173965 GCAGGTCCTAGGCCATTATCTA 58.826 50.000 20.25 0.00 0.00 1.98
826 827 3.777522 GCAGGTCCTAGGCCATTATCTAT 59.222 47.826 20.25 0.00 0.00 1.98
827 828 4.226168 GCAGGTCCTAGGCCATTATCTATT 59.774 45.833 20.25 0.00 0.00 1.73
828 829 5.280727 GCAGGTCCTAGGCCATTATCTATTT 60.281 44.000 20.25 0.00 0.00 1.40
829 830 6.748332 GCAGGTCCTAGGCCATTATCTATTTT 60.748 42.308 20.25 0.00 0.00 1.82
830 831 7.234355 CAGGTCCTAGGCCATTATCTATTTTT 58.766 38.462 20.25 0.00 0.00 1.94
882 883 3.143728 GGAAGAAGTTTGCGGGAACTAA 58.856 45.455 1.09 0.00 38.86 2.24
899 900 6.147985 GGGAACTAACAAAAGTAGCTCTTGAG 59.852 42.308 0.00 0.00 36.40 3.02
945 946 6.319399 GTCATCCCATAAAACCAGTTTTACG 58.681 40.000 15.86 9.41 44.68 3.18
984 986 4.137543 AGTTGTTGGAGTTGCTCTTAAGG 58.862 43.478 1.85 0.00 0.00 2.69
1026 1028 2.002505 ATCCGATCGATTCCTCCAGT 57.997 50.000 18.66 0.00 0.00 4.00
1040 1042 2.874701 CCTCCAGTCAACAAAGACACTG 59.125 50.000 0.00 0.00 40.98 3.66
1062 1064 6.164417 TGATTGGGATCATGCAAATTAAGG 57.836 37.500 0.00 0.00 37.37 2.69
1126 1128 3.113191 AGAATGAGAGGAGGCTTCAGA 57.887 47.619 0.00 0.00 0.00 3.27
1239 1242 3.449018 ACACATGGCTGGAGTAAGAGTAG 59.551 47.826 0.00 0.00 0.00 2.57
1286 1289 0.480252 AAGCAAGAGGACCTTTGGCT 59.520 50.000 8.15 8.15 36.16 4.75
1304 1307 1.673168 CTAGCCAGCTGAAATCCCAC 58.327 55.000 17.39 0.00 0.00 4.61
1305 1308 0.991146 TAGCCAGCTGAAATCCCACA 59.009 50.000 17.39 0.00 0.00 4.17
1306 1309 0.610232 AGCCAGCTGAAATCCCACAC 60.610 55.000 17.39 0.00 0.00 3.82
1307 1310 0.895100 GCCAGCTGAAATCCCACACA 60.895 55.000 17.39 0.00 0.00 3.72
1308 1311 1.843368 CCAGCTGAAATCCCACACAT 58.157 50.000 17.39 0.00 0.00 3.21
1309 1312 1.475280 CCAGCTGAAATCCCACACATG 59.525 52.381 17.39 0.00 0.00 3.21
1313 1316 0.880441 TGAAATCCCACACATGCACG 59.120 50.000 0.00 0.00 0.00 5.34
1329 1332 1.177401 CACGGACAGACAGATCTCCA 58.823 55.000 0.00 0.00 30.42 3.86
1380 1383 1.407989 CCTGAAGCAAAGCCTAGGGAG 60.408 57.143 11.72 0.00 0.00 4.30
1390 1393 2.820973 CTAGGGAGGAGCAGCAGC 59.179 66.667 0.00 0.00 42.56 5.25
1391 1394 2.039462 TAGGGAGGAGCAGCAGCA 59.961 61.111 3.17 0.00 45.49 4.41
1392 1395 2.030490 CTAGGGAGGAGCAGCAGCAG 62.030 65.000 3.17 0.00 45.49 4.24
1401 1404 1.209640 GCAGCAGCAGCAGAAGAAC 59.790 57.895 4.63 0.00 45.49 3.01
1448 1451 4.755629 TGGCAAATAAACTTGTACGCAGTA 59.244 37.500 0.00 0.00 45.11 2.74
1456 1459 4.334481 AAACTTGTACGCAGTAGCAGTTTT 59.666 37.500 13.51 6.49 46.07 2.43
1457 1460 5.524646 AAACTTGTACGCAGTAGCAGTTTTA 59.475 36.000 13.51 0.00 46.07 1.52
1458 1461 6.204108 AAACTTGTACGCAGTAGCAGTTTTAT 59.796 34.615 13.51 1.71 46.07 1.40
1459 1462 7.385752 AAACTTGTACGCAGTAGCAGTTTTATA 59.614 33.333 13.51 0.00 46.07 0.98
1466 1469 8.488651 ACGCAGTAGCAGTTTTATAGTTAATT 57.511 30.769 0.00 0.00 41.94 1.40
1467 1470 8.943002 ACGCAGTAGCAGTTTTATAGTTAATTT 58.057 29.630 0.00 0.00 41.94 1.82
1468 1471 9.769093 CGCAGTAGCAGTTTTATAGTTAATTTT 57.231 29.630 0.00 0.00 42.27 1.82
1474 1477 9.309224 AGCAGTTTTATAGTTAATTTTGGTCCT 57.691 29.630 0.00 0.00 0.00 3.85
1490 1493 1.737793 GTCCTAAACCAACTCATGCGG 59.262 52.381 0.00 0.00 0.00 5.69
1491 1494 1.349688 TCCTAAACCAACTCATGCGGT 59.650 47.619 0.00 0.00 33.32 5.68
1492 1495 1.468520 CCTAAACCAACTCATGCGGTG 59.531 52.381 0.00 0.00 31.94 4.94
1493 1496 2.422597 CTAAACCAACTCATGCGGTGA 58.577 47.619 1.30 0.00 31.94 4.02
1494 1497 1.909700 AAACCAACTCATGCGGTGAT 58.090 45.000 1.30 0.00 35.97 3.06
1495 1498 2.779755 AACCAACTCATGCGGTGATA 57.220 45.000 1.30 0.00 35.97 2.15
1496 1499 3.281727 AACCAACTCATGCGGTGATAT 57.718 42.857 1.30 0.00 35.97 1.63
1497 1500 3.281727 ACCAACTCATGCGGTGATATT 57.718 42.857 1.30 0.00 35.97 1.28
1498 1501 2.945008 ACCAACTCATGCGGTGATATTG 59.055 45.455 1.30 8.13 35.97 1.90
1499 1502 2.291465 CCAACTCATGCGGTGATATTGG 59.709 50.000 1.30 14.97 42.17 3.16
1500 1503 2.945008 CAACTCATGCGGTGATATTGGT 59.055 45.455 0.00 0.00 35.97 3.67
1501 1504 2.564771 ACTCATGCGGTGATATTGGTG 58.435 47.619 0.00 0.00 35.97 4.17
1502 1505 2.092968 ACTCATGCGGTGATATTGGTGT 60.093 45.455 0.00 0.00 35.97 4.16
1503 1506 2.287769 TCATGCGGTGATATTGGTGTG 58.712 47.619 0.00 0.00 0.00 3.82
1504 1507 2.016318 CATGCGGTGATATTGGTGTGT 58.984 47.619 0.00 0.00 0.00 3.72
1505 1508 2.192664 TGCGGTGATATTGGTGTGTT 57.807 45.000 0.00 0.00 0.00 3.32
1506 1509 1.809547 TGCGGTGATATTGGTGTGTTG 59.190 47.619 0.00 0.00 0.00 3.33
1507 1510 1.810151 GCGGTGATATTGGTGTGTTGT 59.190 47.619 0.00 0.00 0.00 3.32
1508 1511 3.004171 GCGGTGATATTGGTGTGTTGTA 58.996 45.455 0.00 0.00 0.00 2.41
1509 1512 3.437395 GCGGTGATATTGGTGTGTTGTAA 59.563 43.478 0.00 0.00 0.00 2.41
1510 1513 4.095782 GCGGTGATATTGGTGTGTTGTAAT 59.904 41.667 0.00 0.00 0.00 1.89
1511 1514 5.729454 GCGGTGATATTGGTGTGTTGTAATC 60.729 44.000 0.00 0.00 0.00 1.75
1512 1515 5.584649 CGGTGATATTGGTGTGTTGTAATCT 59.415 40.000 0.00 0.00 0.00 2.40
1513 1516 6.456853 CGGTGATATTGGTGTGTTGTAATCTG 60.457 42.308 0.00 0.00 0.00 2.90
1514 1517 6.374333 GGTGATATTGGTGTGTTGTAATCTGT 59.626 38.462 0.00 0.00 0.00 3.41
1515 1518 7.414098 GGTGATATTGGTGTGTTGTAATCTGTC 60.414 40.741 0.00 0.00 0.00 3.51
1516 1519 6.597672 TGATATTGGTGTGTTGTAATCTGTCC 59.402 38.462 0.00 0.00 0.00 4.02
1517 1520 4.431416 TTGGTGTGTTGTAATCTGTCCT 57.569 40.909 0.00 0.00 0.00 3.85
1518 1521 4.431416 TGGTGTGTTGTAATCTGTCCTT 57.569 40.909 0.00 0.00 0.00 3.36
1519 1522 4.787551 TGGTGTGTTGTAATCTGTCCTTT 58.212 39.130 0.00 0.00 0.00 3.11
1520 1523 5.197451 TGGTGTGTTGTAATCTGTCCTTTT 58.803 37.500 0.00 0.00 0.00 2.27
1521 1524 5.298276 TGGTGTGTTGTAATCTGTCCTTTTC 59.702 40.000 0.00 0.00 0.00 2.29
1522 1525 5.298276 GGTGTGTTGTAATCTGTCCTTTTCA 59.702 40.000 0.00 0.00 0.00 2.69
1523 1526 6.183360 GGTGTGTTGTAATCTGTCCTTTTCAA 60.183 38.462 0.00 0.00 0.00 2.69
1524 1527 7.425606 GTGTGTTGTAATCTGTCCTTTTCAAT 58.574 34.615 0.00 0.00 0.00 2.57
1525 1528 7.379529 GTGTGTTGTAATCTGTCCTTTTCAATG 59.620 37.037 0.00 0.00 0.00 2.82
1526 1529 6.863126 GTGTTGTAATCTGTCCTTTTCAATGG 59.137 38.462 0.00 0.00 0.00 3.16
1527 1530 6.775142 TGTTGTAATCTGTCCTTTTCAATGGA 59.225 34.615 0.00 0.00 0.00 3.41
1528 1531 7.451255 TGTTGTAATCTGTCCTTTTCAATGGAT 59.549 33.333 0.00 0.00 35.09 3.41
1529 1532 8.306761 GTTGTAATCTGTCCTTTTCAATGGATT 58.693 33.333 0.00 0.00 35.09 3.01
1530 1533 8.421249 TGTAATCTGTCCTTTTCAATGGATTT 57.579 30.769 0.00 0.00 35.09 2.17
1531 1534 8.869109 TGTAATCTGTCCTTTTCAATGGATTTT 58.131 29.630 0.00 0.00 35.09 1.82
1532 1535 9.710900 GTAATCTGTCCTTTTCAATGGATTTTT 57.289 29.630 0.00 0.00 35.09 1.94
1553 1556 5.794687 TTTTATCTACGTGCCAATCACTG 57.205 39.130 0.00 0.00 43.46 3.66
1568 1571 5.728471 CAATCACTGGACTTGTCTGATACT 58.272 41.667 0.61 0.00 0.00 2.12
1569 1572 6.867550 CAATCACTGGACTTGTCTGATACTA 58.132 40.000 0.61 0.00 0.00 1.82
1570 1573 7.323420 CAATCACTGGACTTGTCTGATACTAA 58.677 38.462 0.61 0.00 0.00 2.24
1571 1574 6.268825 TCACTGGACTTGTCTGATACTAAC 57.731 41.667 0.61 0.00 0.00 2.34
1572 1575 5.773176 TCACTGGACTTGTCTGATACTAACA 59.227 40.000 0.61 0.00 0.00 2.41
1573 1576 6.266786 TCACTGGACTTGTCTGATACTAACAA 59.733 38.462 0.61 0.00 0.00 2.83
1574 1577 6.929049 CACTGGACTTGTCTGATACTAACAAA 59.071 38.462 0.61 0.00 32.89 2.83
1575 1578 6.929606 ACTGGACTTGTCTGATACTAACAAAC 59.070 38.462 0.61 0.00 32.89 2.93
1576 1579 6.228258 TGGACTTGTCTGATACTAACAAACC 58.772 40.000 0.61 0.00 32.89 3.27
1577 1580 6.042781 TGGACTTGTCTGATACTAACAAACCT 59.957 38.462 0.61 0.00 33.98 3.50
1578 1581 6.935208 GGACTTGTCTGATACTAACAAACCTT 59.065 38.462 0.61 0.00 32.89 3.50
1579 1582 7.444487 GGACTTGTCTGATACTAACAAACCTTT 59.556 37.037 0.61 0.00 32.89 3.11
1580 1583 8.154649 ACTTGTCTGATACTAACAAACCTTTG 57.845 34.615 0.00 0.00 43.62 2.77
1606 1609 7.727331 TTTTTCCTAGCATTGGACAAATTTG 57.273 32.000 16.67 16.67 30.94 2.32
1607 1610 6.418057 TTTCCTAGCATTGGACAAATTTGT 57.582 33.333 23.49 23.49 45.65 2.83
1629 1632 7.612668 TGTCTAGTGATATAATCCTAGTCGC 57.387 40.000 0.00 0.00 34.53 5.19
1630 1633 7.395617 TGTCTAGTGATATAATCCTAGTCGCT 58.604 38.462 0.00 0.00 34.53 4.93
1631 1634 8.537858 TGTCTAGTGATATAATCCTAGTCGCTA 58.462 37.037 0.00 0.00 34.53 4.26
1632 1635 9.037737 GTCTAGTGATATAATCCTAGTCGCTAG 57.962 40.741 14.29 14.29 44.95 3.42
1639 1642 3.498502 CCTAGTCGCTAGGTGACCT 57.501 57.895 10.00 10.00 46.15 3.85
1640 1643 1.310904 CCTAGTCGCTAGGTGACCTC 58.689 60.000 7.77 0.00 46.15 3.85
1641 1644 1.134037 CCTAGTCGCTAGGTGACCTCT 60.134 57.143 7.77 0.35 46.15 3.69
1642 1645 2.645802 CTAGTCGCTAGGTGACCTCTT 58.354 52.381 7.77 0.00 43.20 2.85
1643 1646 1.465794 AGTCGCTAGGTGACCTCTTC 58.534 55.000 7.77 0.00 43.20 2.87
1644 1647 1.004979 AGTCGCTAGGTGACCTCTTCT 59.995 52.381 7.77 0.00 43.20 2.85
1645 1648 2.239150 AGTCGCTAGGTGACCTCTTCTA 59.761 50.000 7.77 0.00 43.20 2.10
1646 1649 3.015327 GTCGCTAGGTGACCTCTTCTAA 58.985 50.000 7.77 0.00 37.12 2.10
1647 1650 3.442977 GTCGCTAGGTGACCTCTTCTAAA 59.557 47.826 7.77 0.00 37.12 1.85
1648 1651 3.442977 TCGCTAGGTGACCTCTTCTAAAC 59.557 47.826 7.77 0.00 34.61 2.01
1649 1652 3.192844 CGCTAGGTGACCTCTTCTAAACA 59.807 47.826 7.77 0.00 34.61 2.83
1650 1653 4.321750 CGCTAGGTGACCTCTTCTAAACAA 60.322 45.833 7.77 0.00 34.61 2.83
1651 1654 5.548406 GCTAGGTGACCTCTTCTAAACAAA 58.452 41.667 7.77 0.00 34.61 2.83
1652 1655 6.174049 GCTAGGTGACCTCTTCTAAACAAAT 58.826 40.000 7.77 0.00 34.61 2.32
1653 1656 7.328737 GCTAGGTGACCTCTTCTAAACAAATA 58.671 38.462 7.77 0.00 34.61 1.40
1654 1657 7.988028 GCTAGGTGACCTCTTCTAAACAAATAT 59.012 37.037 7.77 0.00 34.61 1.28
1655 1658 9.319143 CTAGGTGACCTCTTCTAAACAAATATG 57.681 37.037 7.77 0.00 34.61 1.78
1656 1659 7.918076 AGGTGACCTCTTCTAAACAAATATGA 58.082 34.615 0.00 0.00 0.00 2.15
1657 1660 7.824779 AGGTGACCTCTTCTAAACAAATATGAC 59.175 37.037 0.00 0.00 0.00 3.06
1658 1661 7.065923 GGTGACCTCTTCTAAACAAATATGACC 59.934 40.741 0.00 0.00 0.00 4.02
1659 1662 7.824779 GTGACCTCTTCTAAACAAATATGACCT 59.175 37.037 0.00 0.00 0.00 3.85
1660 1663 8.383175 TGACCTCTTCTAAACAAATATGACCTT 58.617 33.333 0.00 0.00 0.00 3.50
1661 1664 8.794335 ACCTCTTCTAAACAAATATGACCTTC 57.206 34.615 0.00 0.00 0.00 3.46
1662 1665 8.606830 ACCTCTTCTAAACAAATATGACCTTCT 58.393 33.333 0.00 0.00 0.00 2.85
1675 1678 8.507524 AATATGACCTTCTAAAGTTTACTGGC 57.492 34.615 0.00 0.00 0.00 4.85
1676 1679 5.298989 TGACCTTCTAAAGTTTACTGGCA 57.701 39.130 0.00 0.00 0.00 4.92
1677 1680 5.686753 TGACCTTCTAAAGTTTACTGGCAA 58.313 37.500 0.00 0.00 0.00 4.52
1678 1681 5.529800 TGACCTTCTAAAGTTTACTGGCAAC 59.470 40.000 0.00 0.00 0.00 4.17
1679 1682 5.691896 ACCTTCTAAAGTTTACTGGCAACT 58.308 37.500 0.00 0.00 35.94 3.16
1680 1683 5.763698 ACCTTCTAAAGTTTACTGGCAACTC 59.236 40.000 0.00 0.00 33.12 3.01
1681 1684 5.763204 CCTTCTAAAGTTTACTGGCAACTCA 59.237 40.000 0.00 0.00 33.12 3.41
1682 1685 6.293462 CCTTCTAAAGTTTACTGGCAACTCAC 60.293 42.308 0.00 0.00 33.12 3.51
1683 1686 5.925509 TCTAAAGTTTACTGGCAACTCACT 58.074 37.500 0.00 0.00 33.12 3.41
1684 1687 5.989777 TCTAAAGTTTACTGGCAACTCACTC 59.010 40.000 0.00 0.00 33.12 3.51
1685 1688 2.755650 AGTTTACTGGCAACTCACTCG 58.244 47.619 0.00 0.00 27.49 4.18
1686 1689 2.102588 AGTTTACTGGCAACTCACTCGT 59.897 45.455 0.00 0.00 27.49 4.18
1687 1690 2.148916 TTACTGGCAACTCACTCGTG 57.851 50.000 0.00 0.00 37.61 4.35
1688 1691 1.324383 TACTGGCAACTCACTCGTGA 58.676 50.000 0.00 0.00 38.06 4.35
1697 1700 3.030415 TCACTCGTGAGCACTACCA 57.970 52.632 0.00 0.00 34.14 3.25
1698 1701 1.324383 TCACTCGTGAGCACTACCAA 58.676 50.000 0.00 0.00 34.14 3.67
1699 1702 1.893137 TCACTCGTGAGCACTACCAAT 59.107 47.619 0.00 0.00 34.14 3.16
1700 1703 1.995484 CACTCGTGAGCACTACCAATG 59.005 52.381 0.00 0.00 0.00 2.82
1701 1704 1.618837 ACTCGTGAGCACTACCAATGT 59.381 47.619 0.00 0.00 0.00 2.71
1742 1745 4.214332 GCTTGCTAGTTTTAGTGAGCAACT 59.786 41.667 4.13 0.00 46.95 3.16
1743 1746 5.408604 GCTTGCTAGTTTTAGTGAGCAACTA 59.591 40.000 4.13 0.00 46.95 2.24
1744 1747 6.092807 GCTTGCTAGTTTTAGTGAGCAACTAT 59.907 38.462 4.13 0.00 46.95 2.12
1745 1748 7.277981 GCTTGCTAGTTTTAGTGAGCAACTATA 59.722 37.037 4.13 0.00 46.95 1.31
1976 1980 5.520649 GCAATGTTAAGCTCACCTAGTAGTC 59.479 44.000 0.00 0.00 0.00 2.59
2087 2094 4.018960 ACCATTTAGGCAATCTGAGTGAGT 60.019 41.667 9.58 0.00 43.14 3.41
2163 2170 3.877735 GCCATTGCCCTCTCCTTCTTTTA 60.878 47.826 0.00 0.00 0.00 1.52
2705 2763 9.762381 AAAGAAACAACATATTGGAGGGTAATA 57.238 29.630 0.00 0.00 40.42 0.98
2735 2793 6.985188 TCACTACAAACAAGATATGGCTTC 57.015 37.500 0.00 0.00 0.00 3.86
2764 2822 3.069586 TCACTTCATCAGGACGAAACACT 59.930 43.478 0.00 0.00 0.00 3.55
2775 2833 5.119279 CAGGACGAAACACTGATTCTTACAG 59.881 44.000 0.00 0.00 40.68 2.74
2793 2876 0.673437 AGGGATGTTTGTTGCAACGG 59.327 50.000 23.79 0.00 0.00 4.44
2802 2885 0.171455 TGTTGCAACGGCGTTTCTTT 59.829 45.000 24.49 0.00 45.35 2.52
3066 3168 2.972713 GACTATCATACCTGGGGCAAGA 59.027 50.000 0.00 0.00 0.00 3.02
3267 3375 3.244976 CTGCCAAATGAGGTTTAAAGCG 58.755 45.455 11.50 0.00 0.00 4.68
3275 3383 7.061789 CCAAATGAGGTTTAAAGCGTTTATGAC 59.938 37.037 11.50 0.00 0.00 3.06
3493 3604 2.414559 GGCAATCATGTTCTGTTGACCG 60.415 50.000 0.00 0.00 0.00 4.79
3877 3997 0.108041 ACATTTACTACGTGGGGCGG 60.108 55.000 3.26 0.00 46.52 6.13
3930 4050 3.394606 ACTCAACAACAGGGGTGATTACT 59.605 43.478 0.00 0.00 0.00 2.24
4010 4130 0.974383 GGGAGGAGTCTCGAAAACCA 59.026 55.000 0.00 0.00 40.85 3.67
4026 4146 1.392589 ACCAGCCTGTGTTTGTTCTG 58.607 50.000 0.00 0.00 0.00 3.02
4051 4171 0.750911 GGAGCTGGCAAGATTCTGGG 60.751 60.000 0.00 0.00 0.00 4.45
4130 4250 1.125093 TCACGGGGTGGTGAGTTCAT 61.125 55.000 0.00 0.00 41.76 2.57
4161 4281 1.509923 GGCTCTGCTGTTTCATGCC 59.490 57.895 0.00 0.00 0.00 4.40
4203 4323 2.248280 TCGAGCAAAAGCAGGTAACA 57.752 45.000 0.00 0.00 41.41 2.41
4222 4342 4.713792 ACACCTTCCTTCTGAAATGTCT 57.286 40.909 0.00 0.00 30.31 3.41
4223 4343 5.053978 ACACCTTCCTTCTGAAATGTCTT 57.946 39.130 0.00 0.00 30.31 3.01
4224 4344 6.187727 ACACCTTCCTTCTGAAATGTCTTA 57.812 37.500 0.00 0.00 30.31 2.10
4225 4345 6.601332 ACACCTTCCTTCTGAAATGTCTTAA 58.399 36.000 0.00 0.00 30.31 1.85
4462 4584 5.233988 TCTGGGGCATAAATTTTTGTTTCG 58.766 37.500 9.87 0.00 0.00 3.46
4485 4607 5.041191 AGGAATTAACACCCATCTAGCAG 57.959 43.478 0.00 0.00 0.00 4.24
4622 4745 1.987807 CTCCCCTCCCGCATTCATGT 61.988 60.000 0.00 0.00 0.00 3.21
4697 4820 1.824852 GGAAATCCAACTTGCCCGATT 59.175 47.619 0.00 0.00 35.64 3.34
4716 4839 6.318396 CCCGATTCATTTTTGGCCAAATAAAT 59.682 34.615 30.78 23.88 0.00 1.40
4717 4840 7.497249 CCCGATTCATTTTTGGCCAAATAAATA 59.503 33.333 30.78 13.58 0.00 1.40
4718 4841 8.334632 CCGATTCATTTTTGGCCAAATAAATAC 58.665 33.333 30.78 17.49 0.00 1.89
4719 4842 9.097257 CGATTCATTTTTGGCCAAATAAATACT 57.903 29.630 30.78 15.05 0.00 2.12
4721 4844 8.785329 TTCATTTTTGGCCAAATAAATACTCC 57.215 30.769 30.78 0.00 0.00 3.85
4722 4845 7.334858 TCATTTTTGGCCAAATAAATACTCCC 58.665 34.615 30.78 0.00 0.00 4.30
4723 4846 6.943899 TTTTTGGCCAAATAAATACTCCCT 57.056 33.333 30.78 0.00 0.00 4.20
4724 4847 6.538945 TTTTGGCCAAATAAATACTCCCTC 57.461 37.500 30.78 0.00 0.00 4.30
4725 4848 4.178956 TGGCCAAATAAATACTCCCTCC 57.821 45.455 0.61 0.00 0.00 4.30
4726 4849 3.146847 GGCCAAATAAATACTCCCTCCG 58.853 50.000 0.00 0.00 0.00 4.63
4727 4850 3.434596 GGCCAAATAAATACTCCCTCCGT 60.435 47.826 0.00 0.00 0.00 4.69
4728 4851 4.204799 GCCAAATAAATACTCCCTCCGTT 58.795 43.478 0.00 0.00 0.00 4.44
4729 4852 4.643334 GCCAAATAAATACTCCCTCCGTTT 59.357 41.667 0.00 0.00 0.00 3.60
4730 4853 5.220989 GCCAAATAAATACTCCCTCCGTTTC 60.221 44.000 0.00 0.00 0.00 2.78
4731 4854 6.120220 CCAAATAAATACTCCCTCCGTTTCT 58.880 40.000 0.00 0.00 0.00 2.52
4732 4855 7.277396 CCAAATAAATACTCCCTCCGTTTCTA 58.723 38.462 0.00 0.00 0.00 2.10
4733 4856 7.771826 CCAAATAAATACTCCCTCCGTTTCTAA 59.228 37.037 0.00 0.00 0.00 2.10
4734 4857 9.169592 CAAATAAATACTCCCTCCGTTTCTAAA 57.830 33.333 0.00 0.00 0.00 1.85
4735 4858 9.916360 AAATAAATACTCCCTCCGTTTCTAAAT 57.084 29.630 0.00 0.00 0.00 1.40
4741 4864 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
4742 4865 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
4743 4866 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
4744 4867 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
4745 4868 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
4746 4869 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
4765 4888 9.579932 AGTCTTTTTAGAGATTTCAAATGGACT 57.420 29.630 0.00 0.00 0.00 3.85
4781 4904 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
4782 4905 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
4822 4945 8.779354 AAGTGTAGATTCACTCATTTTACTCC 57.221 34.615 0.00 0.00 46.25 3.85
4823 4946 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
4824 4947 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
4825 4948 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
4826 4949 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
4827 4950 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
4828 4951 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
4829 4952 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
4830 4953 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
4831 4954 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
4832 4955 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
4833 4956 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
4834 4957 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
4835 4958 7.122353 ACTCATTTTACTCCGTATGTAGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
4836 4959 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
4837 4960 8.308931 TCATTTTACTCCGTATGTAGTCACTTT 58.691 33.333 0.00 0.00 0.00 2.66
4838 4961 8.932791 CATTTTACTCCGTATGTAGTCACTTTT 58.067 33.333 0.00 0.00 0.00 2.27
4839 4962 8.891671 TTTTACTCCGTATGTAGTCACTTTTT 57.108 30.769 0.00 0.00 0.00 1.94
4840 4963 7.878477 TTACTCCGTATGTAGTCACTTTTTG 57.122 36.000 0.00 0.00 0.00 2.44
4841 4964 6.092955 ACTCCGTATGTAGTCACTTTTTGA 57.907 37.500 0.00 0.00 0.00 2.69
4842 4965 6.157211 ACTCCGTATGTAGTCACTTTTTGAG 58.843 40.000 0.00 0.00 33.71 3.02
4843 4966 6.015688 ACTCCGTATGTAGTCACTTTTTGAGA 60.016 38.462 0.00 0.00 33.71 3.27
4844 4967 6.931838 TCCGTATGTAGTCACTTTTTGAGAT 58.068 36.000 0.00 0.00 33.71 2.75
4845 4968 7.033791 TCCGTATGTAGTCACTTTTTGAGATC 58.966 38.462 0.00 0.00 33.71 2.75
4846 4969 7.036220 CCGTATGTAGTCACTTTTTGAGATCT 58.964 38.462 0.00 0.00 33.71 2.75
4847 4970 7.221067 CCGTATGTAGTCACTTTTTGAGATCTC 59.779 40.741 16.21 16.21 33.71 2.75
4848 4971 7.971168 CGTATGTAGTCACTTTTTGAGATCTCT 59.029 37.037 22.95 0.00 33.71 3.10
4851 4974 8.637196 TGTAGTCACTTTTTGAGATCTCTAGA 57.363 34.615 22.95 8.73 33.71 2.43
4852 4975 9.078990 TGTAGTCACTTTTTGAGATCTCTAGAA 57.921 33.333 22.95 15.52 33.71 2.10
4853 4976 9.915629 GTAGTCACTTTTTGAGATCTCTAGAAA 57.084 33.333 22.95 16.81 33.71 2.52
4855 4978 8.865090 AGTCACTTTTTGAGATCTCTAGAAAGA 58.135 33.333 30.60 20.23 33.71 2.52
4856 4979 8.921670 GTCACTTTTTGAGATCTCTAGAAAGAC 58.078 37.037 30.60 24.28 33.71 3.01
4857 4980 8.091449 TCACTTTTTGAGATCTCTAGAAAGACC 58.909 37.037 30.60 7.92 32.86 3.85
4858 4981 8.093927 CACTTTTTGAGATCTCTAGAAAGACCT 58.906 37.037 30.60 17.97 32.86 3.85
4859 4982 9.315363 ACTTTTTGAGATCTCTAGAAAGACCTA 57.685 33.333 30.60 14.46 32.86 3.08
4910 5033 2.227388 GGACCAACACAATGAGCAAGAG 59.773 50.000 0.00 0.00 0.00 2.85
4911 5034 3.141398 GACCAACACAATGAGCAAGAGA 58.859 45.455 0.00 0.00 0.00 3.10
4916 5039 3.748083 ACACAATGAGCAAGAGATGTGT 58.252 40.909 3.70 3.70 44.57 3.72
4925 5048 2.029918 GCAAGAGATGTGTGGAAAACCC 60.030 50.000 0.00 0.00 0.00 4.11
4935 5058 4.188462 GTGTGGAAAACCCCTTCTTTTTG 58.812 43.478 0.00 0.00 0.00 2.44
4972 5095 2.089201 GGGTGAAATGGGTTTCTACCG 58.911 52.381 12.18 0.00 46.04 4.02
5026 5149 3.897141 TGGTCGAGCCAATGTAATGTA 57.103 42.857 12.85 0.00 45.94 2.29
5027 5150 4.415881 TGGTCGAGCCAATGTAATGTAT 57.584 40.909 12.85 0.00 45.94 2.29
5107 5230 1.194218 CCCACCACCCATCCATTTTC 58.806 55.000 0.00 0.00 0.00 2.29
5155 5278 3.227276 CGCCGGGCTCTAGGTCAT 61.227 66.667 18.34 0.00 0.00 3.06
5173 5296 1.935873 CATGTCCACCGCTTGACTATG 59.064 52.381 0.00 0.00 32.67 2.23
5177 5300 0.249120 CCACCGCTTGACTATGGACA 59.751 55.000 0.00 0.00 31.69 4.02
5264 5387 3.849951 CCACCTCCCCCGTCATCG 61.850 72.222 0.00 0.00 0.00 3.84
5265 5388 3.075005 CACCTCCCCCGTCATCGT 61.075 66.667 0.00 0.00 35.01 3.73
5304 5427 1.717937 GCCTCACATCACATGTCGC 59.282 57.895 0.00 0.00 42.70 5.19
5324 5447 1.078426 GCCGCCACTGAAGTACCAT 60.078 57.895 0.00 0.00 0.00 3.55
5379 5502 6.365247 GGCGCATATATAAGATATGTAACCCG 59.635 42.308 10.83 2.71 35.14 5.28
5445 5568 3.120060 CCAATGTAGAAGAAGCAGTGCAC 60.120 47.826 19.20 9.40 0.00 4.57
5450 5573 0.670546 GAAGAAGCAGTGCACGCCTA 60.671 55.000 23.57 0.00 0.00 3.93
5481 5604 1.083242 CGCTCAGCTTCTTCTGGAGC 61.083 60.000 9.33 9.33 35.67 4.70
5483 5606 2.008045 GCTCAGCTTCTTCTGGAGCAG 61.008 57.143 13.42 0.00 37.28 4.24
5486 5609 1.748500 GCTTCTTCTGGAGCAGGGC 60.749 63.158 0.00 0.00 31.51 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.182887 TGGCAAAAATACCCATGGACT 57.817 42.857 15.22 0.00 0.00 3.85
23 24 4.526262 GCCCATTTACCATGTTATATGGCA 59.474 41.667 12.43 0.00 42.82 4.92
50 51 3.560025 CCAGACACCATTACTTTCAGCCT 60.560 47.826 0.00 0.00 0.00 4.58
51 52 2.749621 CCAGACACCATTACTTTCAGCC 59.250 50.000 0.00 0.00 0.00 4.85
57 58 1.423541 TGCCACCAGACACCATTACTT 59.576 47.619 0.00 0.00 0.00 2.24
97 98 4.334552 TGCTCAAAAATGCCATCACTCTA 58.665 39.130 0.00 0.00 0.00 2.43
99 100 3.581024 TGCTCAAAAATGCCATCACTC 57.419 42.857 0.00 0.00 0.00 3.51
102 103 4.895961 TCAATTGCTCAAAAATGCCATCA 58.104 34.783 0.00 0.00 0.00 3.07
107 108 5.467735 AGGAGTTTCAATTGCTCAAAAATGC 59.532 36.000 11.97 7.30 0.00 3.56
110 111 7.202526 CACTAGGAGTTTCAATTGCTCAAAAA 58.797 34.615 11.97 0.66 0.00 1.94
120 121 5.010012 CAGTTTTGCCACTAGGAGTTTCAAT 59.990 40.000 0.00 0.00 36.89 2.57
145 146 3.650139 CCACTACTTGTGTGTCACTACC 58.350 50.000 4.27 0.00 44.81 3.18
263 264 7.752695 ACTGAAAACACTCTAAACTTTCACAG 58.247 34.615 0.00 0.00 33.62 3.66
354 355 3.882102 TGGCATGCATTATACTCCCTT 57.118 42.857 21.36 0.00 0.00 3.95
415 416 6.625873 AAGGAACACTTTTCAAGCTAGAAG 57.374 37.500 0.00 0.00 35.35 2.85
549 550 5.309638 CCCCAAATTCCCGTAAACAATTTT 58.690 37.500 0.00 0.00 29.17 1.82
551 552 3.307129 GCCCCAAATTCCCGTAAACAATT 60.307 43.478 0.00 0.00 0.00 2.32
646 647 1.219935 CTTCCCGTAAACCCGAGGG 59.780 63.158 6.63 6.63 45.10 4.30
673 674 0.245266 GCCCACCAAAATTACACCGG 59.755 55.000 0.00 0.00 0.00 5.28
727 728 1.523154 GGCGGCATGTCAACTTTCCA 61.523 55.000 3.07 0.00 0.00 3.53
729 730 0.387239 GTGGCGGCATGTCAACTTTC 60.387 55.000 17.19 0.00 31.00 2.62
734 735 2.672651 CAGGTGGCGGCATGTCAA 60.673 61.111 17.19 0.00 31.00 3.18
791 792 1.160137 GACCTGCCATTCAGTGACAC 58.840 55.000 0.00 0.00 41.25 3.67
792 793 0.036732 GGACCTGCCATTCAGTGACA 59.963 55.000 0.00 0.00 41.25 3.58
806 807 7.408013 AAAAATAGATAATGGCCTAGGACCT 57.592 36.000 13.60 3.56 0.00 3.85
850 851 5.989168 CGCAAACTTCTTCCCCTAAATTTTT 59.011 36.000 0.00 0.00 0.00 1.94
851 852 5.510690 CCGCAAACTTCTTCCCCTAAATTTT 60.511 40.000 0.00 0.00 0.00 1.82
852 853 4.021456 CCGCAAACTTCTTCCCCTAAATTT 60.021 41.667 0.00 0.00 0.00 1.82
853 854 3.509967 CCGCAAACTTCTTCCCCTAAATT 59.490 43.478 0.00 0.00 0.00 1.82
854 855 3.089284 CCGCAAACTTCTTCCCCTAAAT 58.911 45.455 0.00 0.00 0.00 1.40
855 856 2.510613 CCGCAAACTTCTTCCCCTAAA 58.489 47.619 0.00 0.00 0.00 1.85
856 857 1.271707 CCCGCAAACTTCTTCCCCTAA 60.272 52.381 0.00 0.00 0.00 2.69
857 858 0.326927 CCCGCAAACTTCTTCCCCTA 59.673 55.000 0.00 0.00 0.00 3.53
858 859 1.074951 CCCGCAAACTTCTTCCCCT 59.925 57.895 0.00 0.00 0.00 4.79
859 860 0.538746 TTCCCGCAAACTTCTTCCCC 60.539 55.000 0.00 0.00 0.00 4.81
899 900 4.456280 CCTAAAATTCAGGGGAAGTTGC 57.544 45.455 0.00 0.00 40.14 4.17
960 962 5.067805 CCTTAAGAGCAACTCCAACAACTTT 59.932 40.000 3.36 0.00 0.00 2.66
967 969 5.818678 TTAGTCCTTAAGAGCAACTCCAA 57.181 39.130 3.36 0.00 0.00 3.53
1015 1017 4.214332 GTGTCTTTGTTGACTGGAGGAATC 59.786 45.833 0.00 0.00 37.79 2.52
1026 1028 4.163441 TCCCAATCAGTGTCTTTGTTGA 57.837 40.909 0.00 0.00 0.00 3.18
1040 1042 4.992951 GCCTTAATTTGCATGATCCCAATC 59.007 41.667 0.00 0.00 0.00 2.67
1062 1064 8.451908 AGTTTTGGTAACTATGATCCTTATGC 57.548 34.615 0.00 0.00 37.61 3.14
1159 1162 4.343526 CCACAGAGTGTATCATAGCCTCTT 59.656 45.833 0.00 0.00 30.31 2.85
1239 1242 6.151144 ACGATGGGCTTGGAATATAATAAAGC 59.849 38.462 0.00 0.00 41.95 3.51
1286 1289 0.991146 TGTGGGATTTCAGCTGGCTA 59.009 50.000 15.13 0.00 0.00 3.93
1304 1307 0.319813 TCTGTCTGTCCGTGCATGTG 60.320 55.000 4.96 0.00 0.00 3.21
1305 1308 0.610174 ATCTGTCTGTCCGTGCATGT 59.390 50.000 4.96 0.00 0.00 3.21
1306 1309 1.134877 AGATCTGTCTGTCCGTGCATG 60.135 52.381 0.00 0.00 32.13 4.06
1307 1310 1.135915 GAGATCTGTCTGTCCGTGCAT 59.864 52.381 0.00 0.00 33.97 3.96
1308 1311 0.528017 GAGATCTGTCTGTCCGTGCA 59.472 55.000 0.00 0.00 33.97 4.57
1309 1312 0.179124 GGAGATCTGTCTGTCCGTGC 60.179 60.000 0.00 0.00 33.97 5.34
1313 1316 2.028130 ACGATGGAGATCTGTCTGTCC 58.972 52.381 0.00 0.00 33.97 4.02
1329 1332 2.808919 TGGAGGAAGAAGACAGACGAT 58.191 47.619 0.00 0.00 0.00 3.73
1380 1383 2.359602 TTCTGCTGCTGCTGCTCC 60.360 61.111 27.67 7.96 40.48 4.70
1390 1393 5.009410 AGGAATTCTTGTTGTTCTTCTGCTG 59.991 40.000 5.23 0.00 0.00 4.41
1391 1394 5.009410 CAGGAATTCTTGTTGTTCTTCTGCT 59.991 40.000 9.33 0.00 0.00 4.24
1392 1395 5.218139 CAGGAATTCTTGTTGTTCTTCTGC 58.782 41.667 9.33 0.00 0.00 4.26
1393 1396 5.300286 ACCAGGAATTCTTGTTGTTCTTCTG 59.700 40.000 15.60 5.18 0.00 3.02
1401 1404 4.992319 TGTACGTACCAGGAATTCTTGTTG 59.008 41.667 22.43 4.80 0.00 3.33
1448 1451 9.309224 AGGACCAAAATTAACTATAAAACTGCT 57.691 29.630 0.00 0.00 0.00 4.24
1470 1473 1.737793 CCGCATGAGTTGGTTTAGGAC 59.262 52.381 0.00 0.00 0.00 3.85
1471 1474 1.349688 ACCGCATGAGTTGGTTTAGGA 59.650 47.619 0.00 0.00 29.87 2.94
1472 1475 1.468520 CACCGCATGAGTTGGTTTAGG 59.531 52.381 0.00 0.00 32.48 2.69
1473 1476 2.422597 TCACCGCATGAGTTGGTTTAG 58.577 47.619 0.00 0.00 32.48 1.85
1474 1477 2.552599 TCACCGCATGAGTTGGTTTA 57.447 45.000 0.00 0.00 32.48 2.01
1475 1478 1.909700 ATCACCGCATGAGTTGGTTT 58.090 45.000 0.00 0.00 41.91 3.27
1476 1479 2.779755 TATCACCGCATGAGTTGGTT 57.220 45.000 0.00 0.00 41.91 3.67
1477 1480 2.945008 CAATATCACCGCATGAGTTGGT 59.055 45.455 0.00 0.00 41.91 3.67
1478 1481 2.291465 CCAATATCACCGCATGAGTTGG 59.709 50.000 15.01 15.01 44.29 3.77
1479 1482 2.945008 ACCAATATCACCGCATGAGTTG 59.055 45.455 0.00 0.00 41.91 3.16
1480 1483 2.945008 CACCAATATCACCGCATGAGTT 59.055 45.455 0.00 0.00 41.91 3.01
1481 1484 2.092968 ACACCAATATCACCGCATGAGT 60.093 45.455 0.00 0.00 41.91 3.41
1482 1485 2.288729 CACACCAATATCACCGCATGAG 59.711 50.000 0.00 0.00 41.91 2.90
1483 1486 2.287769 CACACCAATATCACCGCATGA 58.712 47.619 0.00 0.00 43.13 3.07
1484 1487 2.016318 ACACACCAATATCACCGCATG 58.984 47.619 0.00 0.00 0.00 4.06
1485 1488 2.418368 ACACACCAATATCACCGCAT 57.582 45.000 0.00 0.00 0.00 4.73
1486 1489 1.809547 CAACACACCAATATCACCGCA 59.190 47.619 0.00 0.00 0.00 5.69
1487 1490 1.810151 ACAACACACCAATATCACCGC 59.190 47.619 0.00 0.00 0.00 5.68
1488 1491 5.584649 AGATTACAACACACCAATATCACCG 59.415 40.000 0.00 0.00 0.00 4.94
1489 1492 6.374333 ACAGATTACAACACACCAATATCACC 59.626 38.462 0.00 0.00 0.00 4.02
1490 1493 7.377766 ACAGATTACAACACACCAATATCAC 57.622 36.000 0.00 0.00 0.00 3.06
1491 1494 6.597672 GGACAGATTACAACACACCAATATCA 59.402 38.462 0.00 0.00 0.00 2.15
1492 1495 6.823689 AGGACAGATTACAACACACCAATATC 59.176 38.462 0.00 0.00 0.00 1.63
1493 1496 6.721318 AGGACAGATTACAACACACCAATAT 58.279 36.000 0.00 0.00 0.00 1.28
1494 1497 6.121776 AGGACAGATTACAACACACCAATA 57.878 37.500 0.00 0.00 0.00 1.90
1495 1498 4.985538 AGGACAGATTACAACACACCAAT 58.014 39.130 0.00 0.00 0.00 3.16
1496 1499 4.431416 AGGACAGATTACAACACACCAA 57.569 40.909 0.00 0.00 0.00 3.67
1497 1500 4.431416 AAGGACAGATTACAACACACCA 57.569 40.909 0.00 0.00 0.00 4.17
1498 1501 5.298276 TGAAAAGGACAGATTACAACACACC 59.702 40.000 0.00 0.00 0.00 4.16
1499 1502 6.371809 TGAAAAGGACAGATTACAACACAC 57.628 37.500 0.00 0.00 0.00 3.82
1500 1503 7.424803 CATTGAAAAGGACAGATTACAACACA 58.575 34.615 0.00 0.00 0.00 3.72
1501 1504 6.863126 CCATTGAAAAGGACAGATTACAACAC 59.137 38.462 0.00 0.00 0.00 3.32
1502 1505 6.775142 TCCATTGAAAAGGACAGATTACAACA 59.225 34.615 0.00 0.00 0.00 3.33
1503 1506 7.214467 TCCATTGAAAAGGACAGATTACAAC 57.786 36.000 0.00 0.00 0.00 3.32
1504 1507 8.421249 AATCCATTGAAAAGGACAGATTACAA 57.579 30.769 0.00 0.00 36.60 2.41
1505 1508 8.421249 AAATCCATTGAAAAGGACAGATTACA 57.579 30.769 0.00 0.00 36.60 2.41
1506 1509 9.710900 AAAAATCCATTGAAAAGGACAGATTAC 57.289 29.630 0.00 0.00 36.60 1.89
1545 1548 5.728471 AGTATCAGACAAGTCCAGTGATTG 58.272 41.667 8.21 0.00 0.00 2.67
1546 1549 7.039011 TGTTAGTATCAGACAAGTCCAGTGATT 60.039 37.037 8.21 0.00 0.00 2.57
1547 1550 6.437477 TGTTAGTATCAGACAAGTCCAGTGAT 59.563 38.462 8.06 8.06 0.00 3.06
1548 1551 5.773176 TGTTAGTATCAGACAAGTCCAGTGA 59.227 40.000 0.00 0.00 0.00 3.41
1549 1552 6.025749 TGTTAGTATCAGACAAGTCCAGTG 57.974 41.667 0.00 0.00 0.00 3.66
1550 1553 6.665992 TTGTTAGTATCAGACAAGTCCAGT 57.334 37.500 0.00 0.00 0.00 4.00
1551 1554 6.369065 GGTTTGTTAGTATCAGACAAGTCCAG 59.631 42.308 0.00 0.00 35.04 3.86
1552 1555 6.042781 AGGTTTGTTAGTATCAGACAAGTCCA 59.957 38.462 0.00 0.00 35.04 4.02
1553 1556 6.465084 AGGTTTGTTAGTATCAGACAAGTCC 58.535 40.000 0.00 0.00 35.04 3.85
1554 1557 7.964604 AAGGTTTGTTAGTATCAGACAAGTC 57.035 36.000 4.75 0.00 35.04 3.01
1555 1558 8.154649 CAAAGGTTTGTTAGTATCAGACAAGT 57.845 34.615 4.75 0.00 35.04 3.16
1582 1585 7.278875 ACAAATTTGTCCAATGCTAGGAAAAA 58.721 30.769 18.13 9.43 44.27 1.94
1583 1586 6.825610 ACAAATTTGTCCAATGCTAGGAAAA 58.174 32.000 18.13 0.00 36.50 2.29
1584 1587 6.418057 ACAAATTTGTCCAATGCTAGGAAA 57.582 33.333 18.13 0.00 36.50 3.13
1603 1606 8.512956 GCGACTAGGATTATATCACTAGACAAA 58.487 37.037 0.00 0.00 35.52 2.83
1604 1607 7.883833 AGCGACTAGGATTATATCACTAGACAA 59.116 37.037 0.00 0.00 35.52 3.18
1605 1608 7.395617 AGCGACTAGGATTATATCACTAGACA 58.604 38.462 0.00 0.00 35.52 3.41
1606 1609 7.852971 AGCGACTAGGATTATATCACTAGAC 57.147 40.000 0.00 9.63 35.52 2.59
1622 1625 2.335316 AGAGGTCACCTAGCGACTAG 57.665 55.000 0.00 6.85 31.76 2.57
1623 1626 2.239150 AGAAGAGGTCACCTAGCGACTA 59.761 50.000 0.00 0.00 31.76 2.59
1624 1627 1.004979 AGAAGAGGTCACCTAGCGACT 59.995 52.381 0.00 0.00 31.76 4.18
1625 1628 1.465794 AGAAGAGGTCACCTAGCGAC 58.534 55.000 0.00 2.68 31.76 5.19
1626 1629 3.361281 TTAGAAGAGGTCACCTAGCGA 57.639 47.619 0.00 0.00 31.76 4.93
1627 1630 3.192844 TGTTTAGAAGAGGTCACCTAGCG 59.807 47.826 0.00 0.00 31.76 4.26
1628 1631 4.803098 TGTTTAGAAGAGGTCACCTAGC 57.197 45.455 0.00 0.00 31.76 3.42
1629 1632 9.319143 CATATTTGTTTAGAAGAGGTCACCTAG 57.681 37.037 0.00 0.00 31.76 3.02
1630 1633 9.042450 TCATATTTGTTTAGAAGAGGTCACCTA 57.958 33.333 0.00 0.00 31.76 3.08
1631 1634 7.824779 GTCATATTTGTTTAGAAGAGGTCACCT 59.175 37.037 0.00 0.00 36.03 4.00
1632 1635 7.065923 GGTCATATTTGTTTAGAAGAGGTCACC 59.934 40.741 0.00 0.00 0.00 4.02
1633 1636 7.824779 AGGTCATATTTGTTTAGAAGAGGTCAC 59.175 37.037 0.00 0.00 0.00 3.67
1634 1637 7.918076 AGGTCATATTTGTTTAGAAGAGGTCA 58.082 34.615 0.00 0.00 0.00 4.02
1635 1638 8.794335 AAGGTCATATTTGTTTAGAAGAGGTC 57.206 34.615 0.00 0.00 0.00 3.85
1636 1639 8.606830 AGAAGGTCATATTTGTTTAGAAGAGGT 58.393 33.333 0.00 0.00 0.00 3.85
1649 1652 8.957466 GCCAGTAAACTTTAGAAGGTCATATTT 58.043 33.333 0.00 0.00 0.00 1.40
1650 1653 8.107095 TGCCAGTAAACTTTAGAAGGTCATATT 58.893 33.333 0.00 0.00 0.00 1.28
1651 1654 7.630082 TGCCAGTAAACTTTAGAAGGTCATAT 58.370 34.615 0.00 0.00 0.00 1.78
1652 1655 7.011499 TGCCAGTAAACTTTAGAAGGTCATA 57.989 36.000 0.00 0.00 0.00 2.15
1653 1656 5.876357 TGCCAGTAAACTTTAGAAGGTCAT 58.124 37.500 0.00 0.00 0.00 3.06
1654 1657 5.298989 TGCCAGTAAACTTTAGAAGGTCA 57.701 39.130 0.00 0.00 0.00 4.02
1655 1658 5.763698 AGTTGCCAGTAAACTTTAGAAGGTC 59.236 40.000 0.00 0.00 34.16 3.85
1656 1659 5.691896 AGTTGCCAGTAAACTTTAGAAGGT 58.308 37.500 0.00 0.00 34.16 3.50
1657 1660 5.763204 TGAGTTGCCAGTAAACTTTAGAAGG 59.237 40.000 0.00 0.00 37.98 3.46
1658 1661 6.483640 AGTGAGTTGCCAGTAAACTTTAGAAG 59.516 38.462 0.00 0.00 37.98 2.85
1659 1662 6.354130 AGTGAGTTGCCAGTAAACTTTAGAA 58.646 36.000 0.00 0.00 37.98 2.10
1660 1663 5.925509 AGTGAGTTGCCAGTAAACTTTAGA 58.074 37.500 0.00 0.00 37.98 2.10
1661 1664 5.107453 CGAGTGAGTTGCCAGTAAACTTTAG 60.107 44.000 0.00 0.00 37.98 1.85
1662 1665 4.748102 CGAGTGAGTTGCCAGTAAACTTTA 59.252 41.667 0.00 0.00 37.98 1.85
1663 1666 3.560068 CGAGTGAGTTGCCAGTAAACTTT 59.440 43.478 0.00 0.00 37.98 2.66
1664 1667 3.131396 CGAGTGAGTTGCCAGTAAACTT 58.869 45.455 0.00 0.00 37.98 2.66
1665 1668 2.102588 ACGAGTGAGTTGCCAGTAAACT 59.897 45.455 0.00 0.00 40.54 2.66
1666 1669 2.221055 CACGAGTGAGTTGCCAGTAAAC 59.779 50.000 0.00 0.00 0.00 2.01
1667 1670 2.101750 TCACGAGTGAGTTGCCAGTAAA 59.898 45.455 1.24 0.00 34.14 2.01
1668 1671 1.684450 TCACGAGTGAGTTGCCAGTAA 59.316 47.619 1.24 0.00 34.14 2.24
1669 1672 1.324383 TCACGAGTGAGTTGCCAGTA 58.676 50.000 1.24 0.00 34.14 2.74
1670 1673 2.124293 TCACGAGTGAGTTGCCAGT 58.876 52.632 1.24 0.00 34.14 4.00
1679 1682 1.324383 TTGGTAGTGCTCACGAGTGA 58.676 50.000 5.76 5.76 38.06 3.41
1680 1683 1.995484 CATTGGTAGTGCTCACGAGTG 59.005 52.381 0.00 0.00 36.20 3.51
1681 1684 1.618837 ACATTGGTAGTGCTCACGAGT 59.381 47.619 0.00 0.00 36.20 4.18
1682 1685 2.370281 ACATTGGTAGTGCTCACGAG 57.630 50.000 0.00 0.00 36.20 4.18
1683 1686 2.414957 CGTACATTGGTAGTGCTCACGA 60.415 50.000 0.00 0.00 36.20 4.35
1684 1687 1.917955 CGTACATTGGTAGTGCTCACG 59.082 52.381 0.00 0.00 36.20 4.35
1685 1688 2.268298 CCGTACATTGGTAGTGCTCAC 58.732 52.381 0.00 0.00 0.00 3.51
1686 1689 1.897133 ACCGTACATTGGTAGTGCTCA 59.103 47.619 0.00 0.00 38.15 4.26
1687 1690 2.094390 TCACCGTACATTGGTAGTGCTC 60.094 50.000 0.00 0.00 37.72 4.26
1688 1691 1.897133 TCACCGTACATTGGTAGTGCT 59.103 47.619 0.00 0.00 37.72 4.40
1689 1692 1.997606 GTCACCGTACATTGGTAGTGC 59.002 52.381 0.00 0.00 37.72 4.40
1690 1693 2.028839 TGGTCACCGTACATTGGTAGTG 60.029 50.000 0.00 0.00 37.72 2.74
1691 1694 2.028748 GTGGTCACCGTACATTGGTAGT 60.029 50.000 0.00 0.00 37.72 2.73
1692 1695 2.028839 TGTGGTCACCGTACATTGGTAG 60.029 50.000 0.00 0.00 37.72 3.18
1693 1696 1.969208 TGTGGTCACCGTACATTGGTA 59.031 47.619 0.00 0.00 37.72 3.25
1694 1697 0.759959 TGTGGTCACCGTACATTGGT 59.240 50.000 0.00 0.00 41.47 3.67
1695 1698 1.885560 TTGTGGTCACCGTACATTGG 58.114 50.000 0.00 0.00 0.00 3.16
1696 1699 4.092821 CACTATTGTGGTCACCGTACATTG 59.907 45.833 0.00 0.00 40.33 2.82
1697 1700 4.250464 CACTATTGTGGTCACCGTACATT 58.750 43.478 0.00 0.00 40.33 2.71
1698 1701 3.857052 CACTATTGTGGTCACCGTACAT 58.143 45.455 0.00 0.00 40.33 2.29
1699 1702 2.610976 GCACTATTGTGGTCACCGTACA 60.611 50.000 9.35 0.00 43.97 2.90
1700 1703 1.997606 GCACTATTGTGGTCACCGTAC 59.002 52.381 9.35 0.00 43.97 3.67
1701 1704 2.373540 GCACTATTGTGGTCACCGTA 57.626 50.000 9.35 0.00 43.97 4.02
1745 1748 8.230486 CGCTCTTGTCTTTCTAAACAAACATAT 58.770 33.333 0.00 0.00 35.13 1.78
1839 1842 2.618794 TCCATTGCCCTGTGGATTTTT 58.381 42.857 0.00 0.00 39.51 1.94
1843 1846 1.784358 CATTCCATTGCCCTGTGGAT 58.216 50.000 0.00 0.00 43.61 3.41
1976 1980 5.359194 AGACTACCCACCAATGTAGAATG 57.641 43.478 3.87 0.00 38.24 2.67
2087 2094 1.078823 TCCTCTAGGGCTCTTCCACAA 59.921 52.381 0.00 0.00 36.21 3.33
2163 2170 1.187567 GCTGGACCCAAAAGCCACAT 61.188 55.000 0.00 0.00 0.00 3.21
2206 2213 4.180817 CAACCAAGACACCTTTTTGAACC 58.819 43.478 0.00 0.00 30.00 3.62
2705 2763 8.950210 CCATATCTTGTTTGTAGTGATGACTTT 58.050 33.333 0.00 0.00 33.21 2.66
2735 2793 0.742281 CCTGATGAAGTGAGGGTGCG 60.742 60.000 0.00 0.00 0.00 5.34
2764 2822 5.048083 GCAACAAACATCCCTGTAAGAATCA 60.048 40.000 0.00 0.00 34.07 2.57
2775 2833 0.943835 GCCGTTGCAACAAACATCCC 60.944 55.000 28.01 0.00 37.47 3.85
2793 2876 0.039527 ATGCGAACCCAAAGAAACGC 60.040 50.000 0.00 0.00 44.95 4.84
3066 3168 3.818210 TGTCGCCAGAAATATGTGTTGTT 59.182 39.130 0.00 0.00 0.00 2.83
3387 3495 7.945033 TGAAAAAGTGATGCATTCCTTAAAC 57.055 32.000 0.00 2.55 0.00 2.01
3390 3498 6.493115 TCCTTGAAAAAGTGATGCATTCCTTA 59.507 34.615 0.00 0.00 0.00 2.69
3493 3604 1.237285 ATGGCTTCCTTCACGTGTGC 61.237 55.000 16.51 10.85 0.00 4.57
3843 3963 0.537143 AATGTCTTGCTTCCCGTGCA 60.537 50.000 0.00 0.00 38.80 4.57
3877 3997 7.315142 TGTTTCATTGCCTCATATTTGTCTTC 58.685 34.615 0.00 0.00 0.00 2.87
3930 4050 9.964354 TTGGAGAAATCTGATTCTTCTTCATTA 57.036 29.630 11.88 0.00 39.70 1.90
3987 4107 2.427812 GTTTTCGAGACTCCTCCCTAGG 59.572 54.545 0.06 0.06 45.21 3.02
4010 4130 1.392589 CCACAGAACAAACACAGGCT 58.607 50.000 0.00 0.00 0.00 4.58
4026 4146 1.919600 ATCTTGCCAGCTCCTCCCAC 61.920 60.000 0.00 0.00 0.00 4.61
4130 4250 1.683707 AGAGCCCAGAGATGCGTGA 60.684 57.895 0.00 0.00 0.00 4.35
4203 4323 9.454859 CTAATTAAGACATTTCAGAAGGAAGGT 57.545 33.333 0.00 0.00 36.72 3.50
4250 4370 9.358872 TGAATGAATGATCGAGCATTAGTATAC 57.641 33.333 27.34 14.87 38.53 1.47
4462 4584 5.036117 TGCTAGATGGGTGTTAATTCCTC 57.964 43.478 0.00 0.00 0.00 3.71
4485 4607 4.413851 AGGGACTAAAGGAAATGAGGGATC 59.586 45.833 0.00 0.00 36.02 3.36
4602 4725 3.125376 ATGAATGCGGGAGGGGAGC 62.125 63.158 0.00 0.00 0.00 4.70
4641 4764 4.524328 ACTCCATGGAACAAAATCTTGGTC 59.476 41.667 17.00 0.00 46.84 4.02
4691 4814 2.758736 TTGGCCAAAAATGAATCGGG 57.241 45.000 17.98 0.00 0.00 5.14
4697 4820 7.181845 AGGGAGTATTTATTTGGCCAAAAATGA 59.818 33.333 33.43 19.62 33.56 2.57
4716 4839 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
4717 4840 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
4718 4841 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
4719 4842 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
4720 4843 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
4739 4862 9.579932 AGTCCATTTGAAATCTCTAAAAAGACT 57.420 29.630 0.00 0.00 0.00 3.24
4743 4866 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
4744 4867 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
4745 4868 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
4746 4869 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
4747 4870 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
4748 4871 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
4749 4872 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
4750 4873 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
4751 4874 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
4752 4875 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
4753 4876 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
4754 4877 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
4755 4878 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
4756 4879 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
4757 4880 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
4758 4881 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
4759 4882 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
4760 4883 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
4761 4884 4.806330 CATACATCCGTATGTGGTAGTCC 58.194 47.826 3.56 0.00 46.70 3.85
4799 4922 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
4800 4923 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
4816 4939 7.811236 CTCAAAAAGTGACTACATACGGAGTAA 59.189 37.037 0.00 0.00 38.23 2.24
4817 4940 7.175467 TCTCAAAAAGTGACTACATACGGAGTA 59.825 37.037 0.00 0.00 38.79 2.59
4818 4941 6.015688 TCTCAAAAAGTGACTACATACGGAGT 60.016 38.462 0.00 0.00 36.91 3.85
4819 4942 6.387465 TCTCAAAAAGTGACTACATACGGAG 58.613 40.000 0.00 0.00 31.13 4.63
4820 4943 6.335471 TCTCAAAAAGTGACTACATACGGA 57.665 37.500 0.00 0.00 31.13 4.69
4821 4944 7.036220 AGATCTCAAAAAGTGACTACATACGG 58.964 38.462 0.00 0.00 31.13 4.02
4822 4945 7.971168 AGAGATCTCAAAAAGTGACTACATACG 59.029 37.037 24.39 0.00 31.13 3.06
4825 4948 9.249053 TCTAGAGATCTCAAAAAGTGACTACAT 57.751 33.333 24.39 0.62 31.13 2.29
4826 4949 8.637196 TCTAGAGATCTCAAAAAGTGACTACA 57.363 34.615 24.39 0.00 31.13 2.74
4827 4950 9.915629 TTTCTAGAGATCTCAAAAAGTGACTAC 57.084 33.333 24.39 0.00 31.13 2.73
4829 4952 8.865090 TCTTTCTAGAGATCTCAAAAAGTGACT 58.135 33.333 26.65 10.13 32.00 3.41
4830 4953 8.921670 GTCTTTCTAGAGATCTCAAAAAGTGAC 58.078 37.037 26.65 20.38 32.00 3.67
4831 4954 8.091449 GGTCTTTCTAGAGATCTCAAAAAGTGA 58.909 37.037 26.65 16.06 32.00 3.41
4832 4955 8.093927 AGGTCTTTCTAGAGATCTCAAAAAGTG 58.906 37.037 26.65 14.77 31.48 3.16
4833 4956 8.201242 AGGTCTTTCTAGAGATCTCAAAAAGT 57.799 34.615 26.65 15.49 31.48 2.66
4857 4980 8.632906 TCTACTCCCTTCGTTCCTAAATATAG 57.367 38.462 0.00 0.00 0.00 1.31
4858 4981 9.425248 TTTCTACTCCCTTCGTTCCTAAATATA 57.575 33.333 0.00 0.00 0.00 0.86
4859 4982 7.909485 TTCTACTCCCTTCGTTCCTAAATAT 57.091 36.000 0.00 0.00 0.00 1.28
4860 4983 7.722949 TTTCTACTCCCTTCGTTCCTAAATA 57.277 36.000 0.00 0.00 0.00 1.40
4861 4984 6.616237 TTTCTACTCCCTTCGTTCCTAAAT 57.384 37.500 0.00 0.00 0.00 1.40
4862 4985 6.042437 ACTTTTCTACTCCCTTCGTTCCTAAA 59.958 38.462 0.00 0.00 0.00 1.85
4863 4986 5.541484 ACTTTTCTACTCCCTTCGTTCCTAA 59.459 40.000 0.00 0.00 0.00 2.69
4864 4987 5.047519 CACTTTTCTACTCCCTTCGTTCCTA 60.048 44.000 0.00 0.00 0.00 2.94
4865 4988 3.902467 ACTTTTCTACTCCCTTCGTTCCT 59.098 43.478 0.00 0.00 0.00 3.36
4866 4989 3.995048 CACTTTTCTACTCCCTTCGTTCC 59.005 47.826 0.00 0.00 0.00 3.62
4867 4990 3.995048 CCACTTTTCTACTCCCTTCGTTC 59.005 47.826 0.00 0.00 0.00 3.95
4868 4991 3.244457 CCCACTTTTCTACTCCCTTCGTT 60.244 47.826 0.00 0.00 0.00 3.85
4869 4992 2.302157 CCCACTTTTCTACTCCCTTCGT 59.698 50.000 0.00 0.00 0.00 3.85
4870 4993 2.565834 TCCCACTTTTCTACTCCCTTCG 59.434 50.000 0.00 0.00 0.00 3.79
4871 4994 3.307550 GGTCCCACTTTTCTACTCCCTTC 60.308 52.174 0.00 0.00 0.00 3.46
4872 4995 2.643304 GGTCCCACTTTTCTACTCCCTT 59.357 50.000 0.00 0.00 0.00 3.95
4873 4996 2.267192 GGTCCCACTTTTCTACTCCCT 58.733 52.381 0.00 0.00 0.00 4.20
4874 4997 1.982958 TGGTCCCACTTTTCTACTCCC 59.017 52.381 0.00 0.00 0.00 4.30
4875 4998 3.181448 TGTTGGTCCCACTTTTCTACTCC 60.181 47.826 0.00 0.00 0.00 3.85
4876 4999 3.813724 GTGTTGGTCCCACTTTTCTACTC 59.186 47.826 0.00 0.00 0.00 2.59
4877 5000 3.201266 TGTGTTGGTCCCACTTTTCTACT 59.799 43.478 0.00 0.00 33.92 2.57
4878 5001 3.547746 TGTGTTGGTCCCACTTTTCTAC 58.452 45.455 0.00 0.00 33.92 2.59
4916 5039 2.774809 CCCAAAAAGAAGGGGTTTTCCA 59.225 45.455 0.00 0.00 41.58 3.53
4925 5048 2.863740 GTTGCGAAACCCAAAAAGAAGG 59.136 45.455 0.00 0.00 0.00 3.46
4935 5058 0.249280 CCCAAGTTGTTGCGAAACCC 60.249 55.000 3.18 0.00 31.64 4.11
4972 5095 1.905637 AAACTCGACCATGGTTTCCC 58.094 50.000 20.85 4.89 0.00 3.97
4986 5109 3.186613 CCAGTAAGCAAGGTCGAAAACTC 59.813 47.826 0.00 0.00 0.00 3.01
5020 5143 6.439636 AGGCTAGCCAATCTCAATACATTA 57.560 37.500 34.70 0.00 38.92 1.90
5026 5149 1.071385 CGGAGGCTAGCCAATCTCAAT 59.929 52.381 34.70 12.30 38.92 2.57
5027 5150 0.465705 CGGAGGCTAGCCAATCTCAA 59.534 55.000 34.70 0.00 38.92 3.02
5072 5195 1.982395 GGGGTGGGCTAGGTTTTGC 60.982 63.158 0.00 0.00 0.00 3.68
5123 5246 2.343387 GCGGCAGCAACCCAAATT 59.657 55.556 3.18 0.00 44.35 1.82
5142 5265 0.466124 GTGGACATGACCTAGAGCCC 59.534 60.000 15.29 0.00 0.00 5.19
5155 5278 0.249120 CCATAGTCAAGCGGTGGACA 59.751 55.000 23.37 10.32 36.50 4.02
5304 5427 1.741770 GGTACTTCAGTGGCGGCTG 60.742 63.158 11.43 0.25 37.81 4.85
5324 5447 2.710902 CGGACGGAGCCTCACATCA 61.711 63.158 0.00 0.00 0.00 3.07
5379 5502 2.488820 GACGCGTCTGGGTACTCC 59.511 66.667 31.12 1.26 41.99 3.85
5445 5568 0.388649 GCGTGGAGGTATCATAGGCG 60.389 60.000 0.00 0.00 0.00 5.52
5450 5573 0.390860 GCTGAGCGTGGAGGTATCAT 59.609 55.000 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.