>input_sequence_19390
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-----------------------------------------ATATAAAATCCGATCGATTCCTCCAGTCAACAAAGACAC
TGATTGGGATCATGCAAATTAAGGCATAAGGATCATAGTTACCAAAACTCATGGAGACGTGGCAGGTAGAATGAGAGGAG
GCTTCAGATGGAAAAAAAA-AGGAAAAAAGAAAACGAAAAAAAGAGGCTATGATACACTCTGTGGGGTAGCTAAAGTTAG
CTAAATAAAGTTATTCCAAACACATGGCTGGAGTAAGAGTAGCTTTATTATATTCCAAGCCCATCGTGTAAGCAAGAGGA
CCTTTGGCTAGCCAGCTGAAATCCCACACATGCACGGACAGACAGATCTCCATCGTCTGTCTTCTTCCTCCATCGTCTCC
TGCCTGAAGCAAAGCCTAGGGAGGAGCAGCAGCAGCAGAAGAACAACAAGAATTCCTGGTACGTACATGGCAAATAAACT
TGTACGCAGTAGCAGTTTTATAGTTAATTTTGGTCCTAAACCAACTCATGCGGTGATATTGGTGTGTTGTAATCTGTCCT
TTTCAATGGATTTTTTTATCTACGTGCCAATCACTGGACTTGTCTGATACTAACAAACCTTTGTTTTTTCCTAGCATTGG
ACAAATTTGTCTAGTGATATAATCCTAGTCGCTAGGTGACCTCTTCTAAACAAATATGACCTTCTAAAGTTTACTGGCAA
CTCACTCGTGAGCACTACCAATGTACGGTGACCACAATAGTGCTTGCTAGTTTTAGTGAGCAACTATATATGTTTGTTTA
GAAAGACAAGAGCGAATGGCTAGAATAGCAACTTCTTATGCACATAATTTGTTGTTTTTCCACAGGGCATACTCGCAAAA
AAAAAATCCACAGGGCAATGGAATGCGTGTTTTTGCATCAAAATTAAAGATCACATTT-AGTATTCAGTCATGAAAATTG
TCTAATGATGAGAATTTATGTTAAGCCATGGTCAAGCAATGTTAAGCTCACCTAGTAGTCATTCTACATTGGTGGGTAGT
CTTACTATACCCACACATATGTTTCTTTCAGGGTGGATTACG---GGGGGCGGAGAAGGAGGCATGGAGCACCATTTAGG
CAATCTGAGTGAGTTGTGGAAGAGCCCTAGAGGAACAGTGGTTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCT
CCTTCTTTTATGTGGCTTTTGGGTCCAGCCGCCGCTGGTCCAACCACTGGATGGTTCAAAAAGGTGTCTTGGTTGCAAAT
GCATTATCATTGTCCCTCGGGACATACAGCATTGGCTTAATGCAGTCCTCGTCGGTGAAGAGTGAGATGTACCCCATCTG
GGCCGTATCCTTGCTCACCCTCTTCGGCAGCATTGACTCAATCAGTGGGTACAACCTTGACCACAACAGCCAGTTCCTGA
AGTTGCTATACCAGCTCTGCCTCTATTGTGGATATGTCCTACTAATTGGTATCTCCACCATCTCCACTGATGTAGGTAAC
ATTGCAATTGGTGTTCTGTGTGCCATCACTTTCATTAAGGGCTTTCACAGATCACT---AGCAAGTGTGTTGCCAAGCAG
ATTGCGGAATGTGAACAAATTGATTGCTGATTACATGGGAGAGAGCCATTCAAGAA------GTCATGATGGTGACGT--
-------------------------CATTATGAGAGATTACCCTAAGTACGTGGTCGACTGGCCCCTAG-----------
----ACCATTTCAGAAAAAGAAACAACATATTGGAGGGTAATAAAGTCATCACTACAAACAAGATATGGCTTCGCACCCT
CACTTCATCAGGACGAAACACTGATTCTTACAGGGATGTTT-------------------------GTTGCAACGGCGTT
TCTTTGGGTTCGCATGTGCTGAGTCCCGCCTTGATGA---GACCGAGGATTTTGTCAACAAAGGCCTGCTTGTACAAAGG
GA-----TGATGGTAC---------TGTTGACTATGAGAGGGCATTTAACGTCATCGAGGTTGAGTTGT--ATTTTCTCT
ATGACATATTTTTCACCAACAATGCCTTCCTTCATTACTATGAGTCGAAAGTTGCAACAATTTGGACATTTGCCTCAATC
ATTGGCATAATATTTGTGGGAGTTGTGACTATCATACCTGGGGCAAGAACAACACATATTTCTGGCGACACTATTGTTGT
GACGACCACATCATATGACCTTGTCATCACTCTAGTAATACTGGTCTCCATTGCTTTGCTCCAAGTGATGCAGTTGGTAC
GGTGTTGGACATCCAACTGGTCTAAAGTTGCCCTTGTGTGTCAGTCTATCAGAAATGGAGACG------GGGGCTGCCAA
ATGAGGTTTAAAGCGTTTATGACCAAGATTAATTTTTTCGCCGGCTATGTCTGGCAACGTAAGCTTGGACAATATTCATT
TGTTGAAGCAATCAGCACAAAAGAGTGTGTGTTGGCCACGTTTGTGAAACGTGCGTTTAAGGAATGCATCACTTTTTCAA
GGATATTTGGGTTGCGGTACATTGAGCAAGTTTATGAGGAAATGTTTGGCAGTCCTACAGGC---AATCATGTTCTGTTG
ACCGCACACGTGAAGGAAGCCATTGTTGACTCTTATATGCGCCTCTGCCTTATTGACAATGGTGATC---------TAGG
TACTTGGTCTTGGACTTGGCCGACAATTGGTGTCTTTTCGGAGAGGAAAAATGGACCGAGAACTATTATGGCTTGTCACA
TTGCGACTTGTTACCTGGAAATGGGGCAGTCAAAAAACAAGAAGTGGCTTGATGAGCACCCTGTAGAAGAAGAGAGGGAG
AAGCTAGCAGTGTATTTTGATGTTGCCACAACGTTGTCCAAGTACTATGCACACTTGATTGTCTCCGCGCCACAGTTGCT
TCCTCCGAACCCCTTGGAGACAAAATCTGCTTATAGTGCAGCTGCACGGGAAGCAAGACATTTACTACGTGGGGCGGAAG
ACAAATATGAGGCAATGAAACATATGGACTCAACAACAGGGGTGATTACTAATGAAGAAGAATCAGATTTCTCCAAGGAA
GAATCAGTTTTCCGGAAGGGCATGGACCTAGGGAGGAGTCTCGAAAACCAGCCTGTGTTTGTTCTGTGGGAGGAGCTGGC
AAGATTCTGGGCCAATAGGTTGCTCTATGCCGCGCCTTCCGATAATGTGAAGGAGCACATTGATCATCTCTCACGGGGTG
GTGAGTTCATCACGCATCTCTGGGCTCTGCTGTTTCATGCCGGCATAGTCAATGCCGACCAATTCGAGCAAAAGCAGGTA
ACACCTTCCTTCTGAAATGTCTTAATTAGTAGTATCACTTATGTTTCACGTATACTAATGCTCGATCATTCATTCATTCA
AT-CAAACTTTTAACCAAGTGTGGCCACATATATTGTATTACTACCAGTATATATCATATATTAGGTTAGACTATATTTT
GTTTAGGC-GGGTAGAGTACAAATGAGAGTGATGAAATTAAGAACTAAGATCAAGTCTAGTTGATCCCCCAAAAGTTATA
TCTGGGGCATAAATTTTTGTTTCGAGGAATTAACACCCATCTAGCAGATCCCTCATTTCCTTTAGTCCCTCA--------
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>chr3D_1_TraesCS3D01G543000
ACATGTTAGTCCATGGGTATTTTTGCCATATAACATGGTAAATGGGCTTTAGGCTGAAAGTAATGGTGTCTGGTGGCATT
TTTTAGCATGCGCCTAATAGAGTGATGGCATTTTTGAGCAATTGAAACTCCTAGTGGCAAAACTGGGTAGTGACACACAA
GTAGTGGCATAAATAATAAAAACCCCAAAAAATAACATCCACGGTACCAAGTCAATATCATTATAATCATCATGCAATCT
CTTTTTATACCATATATTTTTTACTGTGAAAGTTTAGAGTGTTTTCAGTTAACTTGGTCAAACTTTATAAAGTTTGACTT
AGGTCAAAGCTAATATGCAGAGTAAATAAAAATGAAGGGAGTATAATGCATGCCAAGATAAACCCAAACAATTAGTTGAC
ACTCTTTCTACGTGTCTTCTAGCTTGAAAAGTGTTCCTTTCAGCATGAAAGAAGCAAAAATGAATTAGTTACATTGTTAT
AAGGTGGGCATGAGTACAAAAGGAGTGATTAAATTAGAGCAAGTCCAACAACTCCCTTATTCATTAAAAAAAATTGTTTA
CGGGAATTTGGGGCAAAAACCCTCTCAAATAGTTCTCGTAAATCATCCACATCTTAAGGGGATCCTGTAAACTAGGTCCT
TTTTTCCCCTCGGGTTTACGGGAAGATAATCCTCCGGTGTAATTTTGGTGGGCTAGAAACAACCTGAAACTTTACTGTGC
GCCCTGCTGGAAAGTTGACATGCCGCCACCTGGGCCACGCCCGCACCGCCCCTCGCCGGCGGCCGTCACACGTGTCACTG
AATGGCAGGTCCTAGGCCATTATCTATTTTTTAAATTTAAAATAAATAAAAAAAATTTAGGGGAAGAAGTTTGCGGGAAC
TAACAAAAGTAGCTCTTGAGCAACTTCCCCTGAATTTTAGGGTCATCCCATAAAACCAGTTTTACGGGAAG-TTTTTTAA
GAAAGTTGTTGGAGTTGCTCTTAAGGACTAAAGTAATACTAATATAAAATCCGATCGATTCCTCCAGTCAACAAAGACAC
TGATTGGGATCATGCAAATTAAGGCATAAGGATCATAGTTACCAAAACTCATGGAGACGTGGCAGGTAGAATGAGAGGAG
GCTTCAGATGGAAAAAAAA-AGGAAAAAAGAAAACGAAAAAAAGAGGCTATGATACACTCTGTGGGGTAGCTAAAGTTAG
CTAAATAAAGTTATTCCAAACACATGGCTGGAGTAAGAGTAGCTTTATTATATTCCAAGCCCATCGTGTAAGCAAGAGGA
CCTTTGGCTAGCCAGCTGAAATCCCACACATGCACGGACAGACAGATCTCCATCGTCTGTCTTCTTCCTCCATCGTCTCC
TGCCTGAAGCAAAGCCTAGGGAGGAGCAGCAGCAGCAGAAGAACAACAAGAATTCCTGGTACGTACATGGCAAATAAACT
TGTACGCAGTAGCAGTTTTATAGTTAATTTTGGTCCTAAACCAACTCATGCGGTGATATTGGTGTGTTGTAATCTGTCCT
TTTCAATGGATTTTTTTATCTACGTGCCAATCACTGGACTTGTCTGATACTAACAAACCTTTGTTTTTTCCTAGCATTGG
ACAAATTTGTCTAGTGATATAATCCTAGTCGCTAGGTGACCTCTTCTAAACAAATATGACCTTCTAAAGTTTACTGGCAA
CTCACTCGTGAGCACTACCAATGTACGGTGACCACAATAGTGCTTGCTAGTTTTAGTGAGCAACTATATATGTTTGTTTA
GAAAGACAAGAGCGAATGGCTAGAATAGCAACTTCTTATGCACATAATTTGTTGTTTTTCCACAGGGCATACTCGCAAAA
AAAAAATCCACAGGGCAATGGAATGCGTGTTTTTGCATCAAAATTAAAGATCACATTT-AGTATTCAGTCATGAAAATTG
TCTAATGATGAGAATTTATGTTAAGCCATGGTCAAGCAATGTTAAGCTCACCTAGTAGTCATTCTACATTGGTGGGTAGT
CTTACTATACCCACACATATGTTTCTTTCAGGGTGGATTACG---GGGGGCGGAGAAGGAGGCATGGAGCACCATTTAGG
CAATCTGAGTGAGTTGTGGAAGAGCCCTAGAGGAACAGTGGTTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCT
CCTTCTTTTATGTGGCTTTTGGGTCCAGCCGCCGCTGGTCCAACCACTGGATGGTTCAAAAAGGTGTCTTGGTTGCAAAT
GCATTATCATTGTCCCTCGGGACATACAGCATTGGCTTAATGCAGTCCTCGTCGGTGAAGAGTGAGATGTACCCCATCTG
GGCCGTATCCTTGCTCACCCTCTTCGGCAGCATTGACTCAATCAGTGGGTACAACCTTGACCACAACAGCCAGTTCCTGA
AGTTGCTATACCAGCTCTGCCTCTATTGTGGATATGTCCTACTAATTGGTATCTCCACCATCTCCACTGATGTAGGTAAC
ATTGCAATTGGTGTTCTGTGTGCCATCACTTTCATTAAGGGCTTTCACAGATCACT---AGCAAGTGTGTTGCCAAGCAG
ATTGCGGAATGTGAACAAATTGATTGCTGATTACATGGGAGAGAGCCATTCAAGAA------GTCATGATGGTGACGT--
-------------------------CATTATGAGAGATTACCCTAAGTACGTGGTCGACTGGCCCCTAG-----------
----ACCATTTCAGAAAAAGAAACAACATATTGGAGGGTAATAAAGTCATCACTACAAACAAGATATGGCTTCGCACCCT
CACTTCATCAGGACGAAACACTGATTCTTACAGGGATGTTT-------------------------GTTGCAACGGCGTT
TCTTTGGGTTCGCATGTGCTGAGTCCCGCCTTGATGA---GACCGAGGATTTTGTCAACAAAGGCCTGCTTGTACAAAGG
GA-----TGATGGTAC---------TGTTGACTATGAGAGGGCATTTAACGTCATCGAGGTTGAGTTGT--ATTTTCTCT
ATGACATATTTTTCACCAACAATGCCTTCCTTCATTACTATGAGTCGAAAGTTGCAACAATTTGGACATTTGCCTCAATC
ATTGGCATAATATTTGTGGGAGTTGTGACTATCATACCTGGGGCAAGAACAACACATATTTCTGGCGACACTATTGTTGT
GACGACCACATCATATGACCTTGTCATCACTCTAGTAATACTGGTCTCCATTGCTTTGCTCCAAGTGATGCAGTTGGTAC
GGTGTTGGACATCCAACTGGTCTAAAGTTGCCCTTGTGTGTCAGTCTATCAGAAATGGAGACG------GGGGCTGCCAA
ATGAGGTTTAAAGCGTTTATGACCAAGATTAATTTTTTCGCCGGCTATGTCTGGCAACGTAAGCTTGGACAATATTCATT
TGTTGAAGCAATCAGCACAAAAGAGTGTGTGTTGGCCACGTTTGTGAAACGTGCGTTTAAGGAATGCATCACTTTTTCAA
GGATATTTGGGTTGCGGTACATTGAGCAAGTTTATGAGGAAATGTTTGGCAGTCCTACAGGC---AATCATGTTCTGTTG
ACCGCACACGTGAAGGAAGCCATTGTTGACTCTTATATGCGCCTCTGCCTTATTGACAATGGTGATC---------TAGG
TACTTGGTCTTGGACTTGGCCGACAATTGGTGTCTTTTCGGAGAGGAAAAATGGACCGAGAACTATTATGGCTTGTCACA
TTGCGACTTGTTACCTGGAAATGGGGCAGTCAAAAAACAAGAAGTGGCTTGATGAGCACCCTGTAGAAGAAGAGAGGGAG
AAGCTAGCAGTGTATTTTGATGTTGCCACAACGTTGTCCAAGTACTATGCACACTTGATTGTCTCCGCGCCACAGTTGCT
TCCTCCGAACCCCTTGGAGACAAAATCTGCTTATAGTGCAGCTGCACGGGAAGCAAGACATTTACTACGTGGGGCGGAAG
ACAAATATGAGGCAATGAAACATATGGACTCAACAACAGGGGTGATTACTAATGAAGAAGAATCAGATTTCTCCAAGGAA
GAATCAGTTTTCCGGAAGGGCATGGACCTAGGGAGGAGTCTCGAAAACCAGCCTGTGTTTGTTCTGTGGGAGGAGCTGGC
AAGATTCTGGGCCAATAGGTTGCTCTATGCCGCGCCTTCCGATAATGTGAAGGAGCACATTGATCATCTCTCACGGGGTG
GTGAGTTCATCACGCATCTCTGGGCTCTGCTGTTTCATGCCGGCATAGTCAATGCCGACCAATTCGAGCAAAAGCAGGTA
ACACCTTCCTTCTGAAATGTCTTAATTAGTAGTATCACTTATGTTTCACGTATACTAATGCTCGATCATTCATTCATTCA
AT-CAAACTTTTAACCAAGTGTGGCCACATATATTGTATTACTACCAGTATATATCATATATTAGGTTAGACTATATTTT
GTTTAGGC-GGGTAGAGTACAAATGAGAGTGATGAAATTAAGAACTAAGATCAAGTCTAGTTGATCCCCCAAAAGTTATA
TCTGGGGCATAAATTTTTGTTTCGAGGAATTAACACCCATCTAGCAGATCCCTCATTTCCTTTAGTCCCTCAAAAAAATA
GCTTTTTATCTCTCAAACATTTTCCCTCTACCTCATTT-TTGCTCCAAGAAGAGCAATTCTCAGTAAAAAAATATGGGGA
GGCCGCTCCCCTCCCGCATTCATGTTGTGGCGGATGGGGCACCGACCAAGATTTTGTTCCATGGAGTCCCATGAAGGTTG
GAAATCCAACTTGCCCGATTCATTTTTGGCCAAATAAATACTCCCTCCGTTTCTAAATATAAGTCTTTTTAGAGATTTCA
AATGGACTACCACATACGGATGTATGTAGACATATTTTAAAGTGTAGATTCACTCATTTTACTCCGTATGTAGTCACTTT
TTGAGATCTCTAGAAAGACCTATATTTAGGAACGAAGGGAGTAGAAAAGTGGGACCAACACAATGAGCAAGAGATGTGTG
GAAAACCCCTTCTTTTTGGGTTTCGCAACAACTTGGGTGAAATGGGTTTCTACCGGGAAACCATGGTCGAGTTTTCGACC
TTGCTTACTGGTCGAGCCAATGTAATGTATTGAGATTGGCTAGCCTCCGGCTATAAAACCCGGTGCCGCCGACCGCAAAA
CCTAGCCCACCCCACCACCCATCCATTTTCGTCGTTGCCGCCCCCAATTTGGGTTGCTGCCGCCGGGCTCTAGGTCATGT
CCACCGCTTGACTATGGACACCGCCGAGCTCGACCTCGTGGTCGTGGCCGCCGCTCGACATCTGTCGCCTCCCGATCCCC
GCGCCGCCACCACCTCCCCCGTCATCGTCGTCGACGAGCACCCGCGGCGCCTCACATCACATGTCGCAGCCGCCACTGAA
GTACCATGATGTGAGGCTCCGTCCGTGGGGAAAGTGGGCGCATATATAAGATATGTAACCCGGAGTACCCAGACGCGTCG
ACATGTGTGTGAATTGGCATGTTTGCCAATGTAGAAGAAGCAGTGCACGCCTATGATACCTCCACGCTCAGCTTCTTCTG
GAGCAGGGCGAAGCTAAACTTCCTCATCGACAC
>chr3A_1
ACATGTTGGTCCATGGGTATTTTGGCCATATAACATGGTAAATGGGCTTTGAGCTGACAGTAATGGTGTCTCTC-GCATT
TTTTAGCATGCGCCTAACAAAGCGATGACA-TTTTGAGCAGTTGAAACTCCTAGTGGCAAAACTGAGTAGTGAGACACAA
GTAGTGGCATAAATGATAAAAACCCTAAAAAATAACATCCACGGTACCAAGTCAATATCATTATAATCATCATGCTATAT
CTTTTTATACCATATATTTTTTAGTGTGGAAGTTTAGAGTGTTTTCAGTTAACTTGGTCAAATTTTATAAGGTTTGACTT
AGGTCAAAGATAATATGCAGAGTAAATAAAAATGGAGGGAGTATAATGCATGCCAAGATAAACCCAAACAATTAGTTGAC
ACTCTTTCTACGTGTTTTCTAACTTAAAAAGTGTTCCTTTCAGCATGAAAGAAGCAAAAATGAATTAGTTACATTGTTAT
AAGGTGGGCATGAGTACAAAAGGAGTGATTAAATTAGAGCAAGTCCAACAACTCCCTTATTCATAAAAAGACATTGTTTA
CGGGAATTTGGGGCAAAAACCCTCTCAAATAGTTCTCGTAAATCATCCACATCTTAAGGGGATCCTGTAAACTAGGTAC-
TTTTTTTCCTCGGGTTTACGGAAAGATAATCCTTCGGTGTAATTTTGGTGGGCTAGAAACAACCTGAAACTTTATTGTGC
GCCCTGCCGAAAAGCTGACATGCCGCCACCCGGGCCACGCCCGCACCGCCCCTCGCCGGTGGCCGTCACAC--GTCACTG
AATGGC------------------------------------------------------GGGAAGAAGTTTGCGGGAAC
TATCAAAAGTAGCTCTTGAACAACTTCCCCTGAATTTTAGGGTCATCCCATAAAACCAGTTTTACAGGAAGTTTTTTTAA
GGAAGTTGATGTAGTTGCTCTTAAGCACTAAAGTAATACTAATATAAAATCCGATCCATTCCTCCAGCCAACAAAGACAC
TTATTGGGATCATGCAAATTAAGACATAAGGATCATAGTTACCAAAACTCATGGAGACGTGGCAGGTAGAATGAGAGGAG
GCTTCAGCTGGAAAAAAAAGAGGAAAAAACAAAACGAAAAAGAGAGGCTATGATACACTCTCTGGGGTAGCTAAAGTTAG
CTAAATAAAGTTATTCCAAACACATGGCTGGAGTAAGAGTAACTTTATTATATTCCAAGCCCATCGTGTAAGCAAGAGGA
CCTTTGGCGAGCCAGCTGAAATCCCA------CACAGACAGACAGATCTCCTTCGTCTGTCTTCTTCCTCCATCGTCTCC
TGCCTGAAGCAAAGCCTAGGGAAGAGCAGCAGA---AGAAGAAGAACAAGAATTCCTGGTACGTACATGGCAAATAAACT
TGTACGCAGT----------------------------------------------------------------------
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------------------------ACGGTGACCACAATAGTGCTTGCTAGTTTTAGTGAGCAAC----TATGTTTGTTTA
GAAAGGCAAGAGCGAATGGCTAGAATAGCAACTTCTTATGCACATAATTTGTTGTTTTTCCACAGGGCATACTCGCAAAA
AGAAATTCCACAGGGCAATGGAATGCGTGTTTTTGCATCAAAATTAAAGATCACATTTTAGTATTCAGTCATGAAAATTG
TCTAATGATGAGAATTTATGTTAAGCCATGGTCAAGCAATGTTAAGCTCACCTAGTAGTAATTCTACATTGGTGGGTAGT
CTTACTATACCCACACCTATGTTTCTTTCAGGGTGGATTACG---GGGGGCGGAGAAGGAGGCATGGAGCTCCATTTAGG
CAATCTGAGTGAGCTGTGGAAGAGCCCTAGAGGAACAGTGGTTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCT
CCTTCTTTTTTGTGGCTTTTGGGTCCAGCCGCCGCTGGTCCAACCACTGGATTGTTTAAAAAGGTGTCTTGGTTGCAAAT
GCATTATCATTGTCCCTCGGGACATACAGCATTGGCTTAATGCAGTCCTCGTCGGTGAAGAGTGAAATGTACCCCATCTG
GGCCGTATCCTTGCTCACCCTCTTCGGCGGCATTGACTCAATCAGTGGGTACAACCTTGACCACAACAGCCAGTTCCTGA
AGTTGCTATACCAGCTCTGCCTCTATTGTGGATATGTCCTACTAATTGGTATATCCACCATCTCCACTGATGTAGGTAAC
ATTGCAATTGGTGTTCTGTGTGCCATCACTTTCATTAAGGGCTTTCACAGATCACT---AGCAAGTGTGTTGCCAAGCAG
ATTGCGGAATGTAAACAAATTGATTGCTGATTACAAGGGAGAGAGCCATTCAAGAA------GTCATGATGGTGACGT--
-------------------------CATTATGAGAGATTACCCTAAGTACGTTGTCGACTGGCCCCTAG-----------
----ACCATTTCAGAAAAAGAAACAACATATTGGAGGGTAATGAAGTCATCACTACAAACAAGATATGGCTTTGCACCCT
CACTTCATCAGGACGAAGCACCGATTATTACAAGGATGTTTGCCTCTCCTTCTCCCTATGCCATTTGTTGCAACGACGTT
TCTTCAGGTTTGCATGTGCTGAGTCCCGCCTTGATGA---GACCGAGGATTTTGTCAACAAAGGCCTGCTTGTACAAAGG
GA-----TGATGGCAC---------TGTTGACTATGAGAGGGCATTTAACGTCATCGAGGTTGAGTTGT--ATTTTCTCT
ATGACATATTTTTCACCAACAATGCCTTCCTTCATTACTATGAGTTGAAAGTTGCAACAATTTGGACATTTGCCTCAATC
ATTGGCATAATATTTGTGGGAGTTGTGACTATCATACCTGGGGCAAGGAGAACACATATTTCTGGCGACACTATTGTTGT
GACGACCGCATCATATGACCTTGTCATCACTCTAGTAATACTGGTCTCCATTGTTTTGCTCCAAGTGATGCAGTTGGTAC
GGTGTTGGACATCCAACTGGTCTAAAGTTGCCCTTGTGTGTCAGTCTATCAGAAATGGAGACG------GGGGCTGCCAA
ATGAGGTTTAAAGCATTTATGAGCAAGATTGATTTTTTCGCCGGCTATGTCTGGCAACGTAAGCTTGGACAATATTCATT
TGTTGAAGCAATCAGCACAAAAGAGTGTGTGTTGGCCACGTTTGTGAAACGTGCATTCAAGGAATGCATCACTTTTTCAA
GGATATTTGGGTTGCGGTACATTGAGCAAGTTTACGAGGAAATGTTTGGCAGTCCTACAGGC---AATCATGTTCTGTTG
ACCACACACGTGAAGGAAGCCATTGTTGACTCTTATATGCGCCTCTGCCTTATTGACAATGGTGATC---------TAGG
TACTTGGTCTTGGACTTGGCCGACAATTGGTGTCTTATCGGAGAGGAAAAATGGACCGAGAACTATTATGGCTTGTCACA
TTGCGACTTGTTACCTAGAAATGGGGCAGTCAAAAAACAAGAAGTGGCTTGATGAGCACCCTGTAGAAGAAGAGAGGGAG
AAGCTAGCAGTGTATTTTGATGTTGCCACAACGTTGTCCAAGTACTATGCACACTTGATTGTCTCCGCGCCACAGTTGCT
TCCTCCGAACCCCTTGGAGACAAAATCTGCTTATAATGCAGCCGCACGGGAAGCAAGACATTTACTACGTGGGGCGAAAG
ACAAATATGAGGCAATGAAACATATGGACTCAACAACAGGGGTGATTACGAATGAAGAAGAATCAGATTTCTCCAAGGAA
GAATCAGTTTTCCGGAAGGGCATGGAACTAGGGAGGAGTCTCGAAAACCGGCCTGTGTTTGTTCTATGGGAGGAGCTGGC
AAGATTCTGGACCAATAGGTTGCTCTATGCCGCGCCTTCCGATAATGTGAAGGAGCACATTGATCATCTCTCACGGGGTG
GTGAGTTCACCACGCATCTCTGGGCTCTGCTGTTTCATGCTGGCATAGTCAATGCCGACCAATTCGAGCAAAAACAGGTA
ACGCCATCCTTCTGAAATGTC----TTAGTAGTATCACTTATGTTTCACATATACTAATGCTCGATCATTCATTCATTCA
ATTCAAACTTTTAACCAAGTGTGGCTACATATATTGTATTACTACCAGTATATATCATATATTAGGTTAGACTATATTTT
GTTTAGGCAGGGTAGAGTACAAATGAGAGTGATGAAATTAAGAACTAAGATCAAGTCTAGTTGATCCCCCAAAAGTTATA
TCTGGGGCATAAATTTTTGTTTCAAGGAATTAACACCCATCTAGCATATCCCTCATTTCCTTTAGTCCCTCAAAAA--TA
GCTTTTTATCTCTCAAACATTTTCCCTCTACCTCATTTTTTGCTCCAAGAAGAGCAATTCTCAGTAAAAAAAAATGGGGA
GGCCACTCCCCTCCCGCATTCATGGTGTGGCGGATGGGGCACCAACCAAGATTTTGTTCCATGGAGTCCCATGAAGGTTG
GAAATCCAACTTGTCCGATGCATTTTTGGCCAAATAAA------------------------------------------
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-----------------------------------------TAGAAAAGTGGGACCAACACAATGAGCAAGA--TGTGCG
GAAAACCACTTCTTTTTCGGTTTCGCAACAACTTGGGTGAAATGGGTTTCTACCAGGAAACCATGGTCAAGTTTTCGACC
TTGCTTACTGGTCGAGCCAATGGAATGTCATGAGATTGGCTAGCCTCCGGCTATGAAACCCGGTGCCGCCGACCCCAAAA
CCTAGCCCACCCCACCACCCATCCATTTTGGTCGTTGCCGCCCCCGATTTGGGTTGCTGCCGCCAGGCTCTAGGTCACGT
CCACCGCTTGACTATCGACGCCGCCGAGCTCGACCTCGTGGTCGTGGCCGCCGCTCGACATCCATCGCCTCCCGAGCCCC
GCGCTGCCACCACCTCCCCCATCATCACCGTCGACGAGCACCCACGGCGCCTCACA-----TGTCGAAGCCGCCACTGAA
GTACCACGATGTGAGGCTCCGTCCGTGGGGAAAGTGGGCGCATATATAAGATATGTAACCCAGAGTACCCAGACGCGTCG
ACATGTGTGTGAATTGGCATGTTTGCCAATGTAGAAGAAGCAGTGCATGCCTGTGATACCTCCACGCTCAGCTTCTTCTG
GAGTACGGTGAAGCTAAACTTCCTCCTCGACAC
>chr1B_1998
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CTTACTATAGCTACATATATGTCTATTTCAGGGTGCATTATGGGTGGCGGTGGAGAAAGAGGCATGAAGCAACCTTCAGG
CAATCCGAGTGAGCTGTGGAAGAGCCCTAGGGGAACAGTGATTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCT
CCTTCTTCTTTGTGGCTTTTGGGTCCAGCCGCCGCTGGTCCAACCGCTGGATCATTCAAAAAGGTGTCTTGGCTGCAAAT
GCATTATCTTTGTCCCTCGGAACATACAGCATTGGTTTGATGCAATCCTCGCCGGTGAAGAGTGAGATGTACCCCATCTG
GGCCGTATCCTTGCTCACCCTCTTTGGCAGCATTGACTCAATCAGCGGGTACAGTCTTGACCACAACAGCCAGTTCCTGA
AGCTGCTATACCAGCTATGCCCCTACTGTGGATATGTCCTCCTAATTGGTATCTCCACCATCTCCAGTGATGTAGGTAAC
ATTGCAATCGGTGTTCTGTGTGCCATCACTTTCATTAAGGACTTTCACAGATCACT---AGCAAGTGTGTTGCCGAGCAG
ATTGCGGAATGTGAATAAATTGATTGCTGATTACATGGAATATCGTTTTTCACAACTAAATGGTCCTGATGATGTCAT--
-------------------------C---ATGAGAGATTACCCTAAGTACGTGGTCGACTGGCCCCTAGACAAGGCCGAG
TCTGACCATTTCAAAAAAACAAACAACATATTGGATGGTAGTGAAGTCATCACCATAAACCAGATATGGCATTGCGCCAT
CGGTTCACCAGGATCAAATGCCAGTTCTTACAAGGATGTTTGCCTCTCCTTCTCTTTATGCCATTTGTTGCAAAGACGTT
TCTTCGGGTTCAAATGTGCTGAGTCCAGCTTTGGTGA---GGCCCTAGATTTTATCAACAGAGGTTTGTTTGTACAAAGG
GGCCGGGTGATGGTGC---------TGTCGACTGCGAGAGAGCTTTTAAGGTCATCGAGGTTGAGTTAA--CTTTTCTCT
ATGATATTATTTTCACCAACAATGCCTTCCTTCATTACTATGAATCAAAAGTTGCTACAATTTGGACATTTGCCTCAATC
ACCGGCATAATTTTTGTGGGAGTTGTGACTGTCATGCCTGGGACAAGGAGAACACATATTTCCGGCGGCACTATTGTTGT
GACTACCACACCGTATGACCTTGTTATCACACTAGTAATATTGGTCTCCATTGCTTTGCTCCAAGTGATGCAGTTGGTAC
GGTGTTGGACATCCAAGTGGGCTAGAGTTGCCCTTGTGTGTCAGTCTATCAGAAATGGAGACG------GGGGATGGAGA
ATGAGGTTACAAGCATTTATGTGCAGGATTAATTTGTTCGACGGTTATGTCTGGCAGAATAAGCTTGGGCAATATTCATT
TGTTGAATCAATCAACACAAGAGAGTGTGTGCTATCCAAGTGCGTGGAACGTACATTCATGGAATGCATCACTTTTGCAA
GGATGTTTGGGTTGCGGTACATTGAACAAGTTTATGAGGAAATGTTTGGTGGTCCTACGGGATTAAATCATGTTGTGTTG
ACCACACATGTGAAGGAAGCCATTGTTGACTCTTATATGCGCATTTGTGTTACGTACAATGATTCTGAACCAACTATAGT
TACTTGGTCTTTTGACAT------AATTGGTCTCTCTTCAGACGGAACATATGGACCGAGAACTGTTATGGCTTGGCACA
TTGCGACTTGTTACCTGGAAATTGGGCAGTCCAAGAACAAGAAGTGGCTTGAAGAGCACTCTGTAGAAGAGAGAATGG--
-AGCTAGCAGTGTATTTTGATGTTGCCACAACGCTGTCTAA---------------------------------------
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>chr3B_1998
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CTTACCATAACTACAAATATGCTTCTTTCAGGGTGGATTCTGGGTGGCGGTAGAGAAGGGGTCATGGAGCAGCCTATAGG
CAATCCGAGTGAGCTGTGGAAGAGCCCCAGGGGAACAGTGATTCGTATTGAGGTGCTTGCATTGGTGGCCATTGCCCTCT
CCTTCTTCTTTGTGGCTTTTGGGTCCAGCTGCCGCTGGTCCAACCGTTGGATCATTCAAAAAGGTGTCTTGGCTGCAAAT
GCATTATCTTTGTCCCTTAGGACATATAGCATTGGCCTGATGCAGTCCTCACCGGTGAAGAGTGAGATGTACCCCATCTG
GGCCGTATCCTTGCTCACCCTCTTCGGCAGCATTAACTCAGTCAATGGGTACAATCTTGACCACAACAACCAGTTGTTGA
AGCTGCTATACCAGCTCTGCCTCTATTGTGGATATGTCCTGCTAATTGGTATCTCCACCATCTCCAGTGATGTAGGTAAC
ATTGCAATCGGTGTTTTGTGTGCCATCACTTTCATTAAGGGTTTTCATAGATCACTGCTAGCAAGTGTGTTGCCGAGCCG
ATTGCGGAGTGTGAATAAATTGATTGCTGATTGCATGGAGTCAGAAAAGATTAAGGCTACAGACAGACTTTGCGGATGGT
CACTTGGCACTGGCAATTTAACCGCC---ACGATAGATTGCCCTATTTACGTGGTCGACTGGCATTGAACATGTC-----
--------------------------------------TAATGGAGTCATCACCACCGATGATATATGGCATTGCGCCA-
--GTTCACCGGGATCGATTGCAAATTCTTATAAGGATGTTTGCATCTCCTTCTCCCTATGTCATTTATTGCAACGACGTT
TCTTCGGGTACACAAGTGATGATGAGTTCACCAAGGGCTTGGCCAGGGAGTTTTTCAAAAAAATTGTGCTTGCTGAAATG
GA-----TGATGATGACAGTGGGTTTGTCGATGGTGAGAGGGCTTTTAAGGTCATTGAGGTAGAGTTGGCGCTTTTCCCT
ATGATCTATTCTTCACCAACAATGCTTTCCTTCAATATCATGAATCGAAAGTGGCAACAATTTGGACCTTTGCTTCAATA
GCCGGTATATTTTTTGTGGGAATAGTGACTGTCATACCCGGGACATGGACAACACATATTTCTGGTGGTACAGTTGTTGT
GACTACCACACCCTATGACCTTGTTATCACGCTTGTAATACTGGCGTCTATTGCTTTGCTCCAAGTGATGCAGTTGGTAC
GGTGCTGGACATCCAACTGGGCTAGACTTGCCCTGGTGTTCCAGTCTATCAGAAATAAGGGAGAGGAGTGGGGCTGTCTA
ATGAGGCTAAAAGCATTT-----CAGGATTAATTGGTTCGACGGTTATGCCTGGCAAGGTAAGCTTGGGCAATATTCATT
TGTCGAATCAATTAGCACAAAAGAGTGTGTGATATCGTGGCATGTAGTTTTTCCACTCGGAATTCGCGTCTTTTTTGCAA
GGATGCTTGGGTTGCAGTACATTGCACATGTTTACAGGGAAATGTTTGATGGTCCTGCAGGATTTAATCATGTCGTGTTG
ACCAAAGGTGTGAAGGAAGCCATTATTCTCTCTTAT--------------------------------------------
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---------------------------------
>SNPs
-------S---------------S--------------------------SS-----S-------------SSSS-----
-----------------S-S--S----S--S---------S------------------------S-------S------
--------------S----------S-------------------------------------------------S--S-
-----------------------S----S---------------------------------S-------S---------
---------S------------------------S---------------------------------------------
---------------S-----S---S------------------------------------------------------
----------------------------------------------------------------S----S-S--------
-----------------------------------------------------------------------------S-S
-----SS--------------S-----------S----------------------------------------S-----
-------S-S----S---------------S----------------------------S-----------SS-------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
--S----------------S---------------------------------------------S--------------
-S------S--S-------------S------------------------------S----------S------------
-S---------------------S--------------------------------------------------------
-------S---------------------S-----------S-------------------S------------------
-----------------------------------------S--------------------------------------
--------S-----------------SSSSSS---S---------------S----------------------------
----------------------S---------SSSS-------S------------------------------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------SSSS------------
-----S--------------------------------------------------------------------------
-S---S--------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
---------S------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-----------------------------S-------
---------------------S----------S------------------------------------------S----
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-------S---------------------------------------------------------
------------------------------------------------------S--S----------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S------S---------------------------------S---
-------------------------------------------------S------------------------------
--------------------------S----------------------S---------------S--------------
----------S---------------------------------------------------------------------
---------S------------------------------S--------------------------------S------
--S--S---------------SSSS------------------------S------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S----------------------S-----------------------------SS--
------------------------------------------------------------------------S-------
----S-------------------S------------------S------------------------------------
-------------S-----S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------SS----S-
-------S---------S------------------------------------S-------------S-----------
----------------------S-----SS------------------------S-------------------S-----
-----------------------------S---------------S------------------S------------S--
---------------S---S------------------------------------------SS-----------S----
----S---------------S-----SS---------------S------------SSSSS-----S-------------
------S------------------------------------------------------S------------------
-----------------------------------------------S----S---------------------------
---S-S--S----------------S-------
>forward_817
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-----------------------------------------------------------------------------CTG
AATGGCAGGTCCTAGGC---------------------------------------------------------------
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---------------------------------
>reverse_2876
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---------------------------------------------------------------------------GCGTT
TCTTTGGGTTCGCAT-----------------------------------------------------------------
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---------------------------------
>forward_1289
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAGCAAGAGGA
CCTTTGGCT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>reverse_3168
--------------------------------------------------------------------------------
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-----------------------------------------------AACAACACATATTTCTGGCGACA----------
--------------------------------------------------------------------------------
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---------------------------------
>forward_2885
--------------------------------------------------------------------------------
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-----------------------------------------------------------------TGTTGCAACGGCGTT
TCTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>reverse_3963
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------------------------------------------TGCACGGGAAGCAAGACATT------------------
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---------------------------------
>forward_3604
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--------------------------------------------------------------GGCAATCATGTTCTGTTG
ACCG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>reverse_5278
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-----------------------------------------------------------------------------TGT
CCACCGCTTGACTATGG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
