Multiple sequence alignment - TraesCS3D01G541100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G541100 chr3D 100.000 2999 0 0 1 2999 612310308 612313306 0.000000e+00 5539.0
1 TraesCS3D01G541100 chr3D 86.305 387 48 4 106 490 597140788 597141171 1.660000e-112 416.0
2 TraesCS3D01G541100 chr3D 86.667 345 46 0 106 450 25385488 25385832 1.690000e-102 383.0
3 TraesCS3D01G541100 chr3D 95.455 44 2 0 65 108 569284390 569284433 1.490000e-08 71.3
4 TraesCS3D01G541100 chr3B 85.340 2558 195 94 506 2979 826653364 826650903 0.000000e+00 2481.0
5 TraesCS3D01G541100 chr3A 93.256 1290 58 9 1727 2990 747002662 747003948 0.000000e+00 1873.0
6 TraesCS3D01G541100 chr3A 83.247 388 65 0 106 493 118506945 118507332 1.020000e-94 357.0
7 TraesCS3D01G541100 chr3A 90.643 171 5 1 2741 2900 710876064 710876234 1.810000e-52 217.0
8 TraesCS3D01G541100 chr3A 92.199 141 10 1 751 890 747001844 747001984 6.560000e-47 198.0
9 TraesCS3D01G541100 chr3A 89.831 118 11 1 525 642 747001594 747001710 1.860000e-32 150.0
10 TraesCS3D01G541100 chr3A 94.382 89 2 2 1090 1175 747002139 747002227 1.880000e-27 134.0
11 TraesCS3D01G541100 chr3A 96.154 52 2 0 57 108 27047381 27047432 5.330000e-13 86.1
12 TraesCS3D01G541100 chr3A 89.231 65 7 0 987 1051 747002066 747002130 6.890000e-12 82.4
13 TraesCS3D01G541100 chr6D 83.475 587 59 21 2339 2892 445767610 445767029 2.060000e-141 512.0
14 TraesCS3D01G541100 chr6D 78.413 542 65 29 2067 2559 445776208 445775670 3.760000e-79 305.0
15 TraesCS3D01G541100 chr6D 94.231 52 3 0 57 108 338512529 338512478 2.480000e-11 80.5
16 TraesCS3D01G541100 chr6B 79.279 777 88 36 2100 2815 672368167 672367403 2.710000e-130 475.0
17 TraesCS3D01G541100 chr6B 86.377 345 46 1 106 450 655080108 655080451 2.820000e-100 375.0
18 TraesCS3D01G541100 chr6B 80.000 310 40 12 2225 2513 672407164 672406856 3.030000e-50 209.0
19 TraesCS3D01G541100 chr6B 93.750 48 3 0 57 104 481846129 481846176 4.150000e-09 73.1
20 TraesCS3D01G541100 chr2D 86.340 388 51 1 106 493 535755870 535756255 3.570000e-114 422.0
21 TraesCS3D01G541100 chr4D 87.536 345 38 2 106 450 485684658 485684997 7.790000e-106 394.0
22 TraesCS3D01G541100 chr5D 88.615 325 33 2 106 430 383742027 383741707 2.800000e-105 392.0
23 TraesCS3D01G541100 chr5B 88.000 325 39 0 106 430 460219206 460218882 4.690000e-103 385.0
24 TraesCS3D01G541100 chr1A 83.969 393 58 4 106 496 278464257 278464646 3.650000e-99 372.0
25 TraesCS3D01G541100 chr1A 90.643 171 5 1 2741 2900 490922 490752 1.810000e-52 217.0
26 TraesCS3D01G541100 chr1A 90.058 171 6 1 2741 2900 90653250 90653420 8.420000e-51 211.0
27 TraesCS3D01G541100 chr1A 89.474 171 7 1 2741 2900 507203668 507203838 3.920000e-49 206.0
28 TraesCS3D01G541100 chrUn 85.119 336 38 8 106 430 309327601 309327935 1.720000e-87 333.0
29 TraesCS3D01G541100 chrUn 89.091 55 6 0 1 55 29128028 29128082 5.360000e-08 69.4
30 TraesCS3D01G541100 chr1B 83.476 351 45 6 106 444 600914370 600914719 6.240000e-82 315.0
31 TraesCS3D01G541100 chr1B 87.179 78 7 3 421 497 581212707 581212632 5.330000e-13 86.1
32 TraesCS3D01G541100 chr6A 89.062 256 23 3 2345 2596 592440304 592440050 2.240000e-81 313.0
33 TraesCS3D01G541100 chr6A 90.643 171 5 1 2741 2900 590629521 590629691 1.810000e-52 217.0
34 TraesCS3D01G541100 chr6A 90.058 171 6 1 2741 2900 245619009 245618839 8.420000e-51 211.0
35 TraesCS3D01G541100 chr6A 90.058 171 6 1 2741 2900 372222554 372222724 8.420000e-51 211.0
36 TraesCS3D01G541100 chr6A 90.058 171 6 1 2741 2900 377584715 377584545 8.420000e-51 211.0
37 TraesCS3D01G541100 chr6A 80.237 253 30 12 2658 2892 592439619 592439369 3.970000e-39 172.0
38 TraesCS3D01G541100 chr6A 77.008 361 36 20 2107 2422 592455925 592455567 2.390000e-36 163.0
39 TraesCS3D01G541100 chr5A 90.643 171 5 1 2741 2900 114309796 114309966 1.810000e-52 217.0
40 TraesCS3D01G541100 chr5A 89.474 171 7 1 2741 2900 421156296 421156126 3.920000e-49 206.0
41 TraesCS3D01G541100 chr5A 88.889 171 8 1 2741 2900 421118100 421117930 1.820000e-47 200.0
42 TraesCS3D01G541100 chr7A 87.591 137 9 1 2854 2990 72961396 72961524 5.180000e-33 152.0
43 TraesCS3D01G541100 chr7B 96.154 52 2 0 57 108 517107084 517107135 5.330000e-13 86.1
44 TraesCS3D01G541100 chr4B 94.545 55 3 0 1 55 105727492 105727438 5.330000e-13 86.1
45 TraesCS3D01G541100 chr4A 94.231 52 3 0 57 108 546016672 546016621 2.480000e-11 80.5
46 TraesCS3D01G541100 chr2B 94.231 52 3 0 57 108 110405176 110405227 2.480000e-11 80.5
47 TraesCS3D01G541100 chr2B 94.231 52 3 0 57 108 468234975 468235026 2.480000e-11 80.5
48 TraesCS3D01G541100 chr2A 82.278 79 13 1 420 497 777950527 777950449 1.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G541100 chr3D 612310308 612313306 2998 False 5539.00 5539 100.0000 1 2999 1 chr3D.!!$F4 2998
1 TraesCS3D01G541100 chr3B 826650903 826653364 2461 True 2481.00 2481 85.3400 506 2979 1 chr3B.!!$R1 2473
2 TraesCS3D01G541100 chr3A 747001594 747003948 2354 False 487.48 1873 91.7798 525 2990 5 chr3A.!!$F4 2465
3 TraesCS3D01G541100 chr6D 445767029 445767610 581 True 512.00 512 83.4750 2339 2892 1 chr6D.!!$R2 553
4 TraesCS3D01G541100 chr6D 445775670 445776208 538 True 305.00 305 78.4130 2067 2559 1 chr6D.!!$R3 492
5 TraesCS3D01G541100 chr6B 672367403 672368167 764 True 475.00 475 79.2790 2100 2815 1 chr6B.!!$R1 715
6 TraesCS3D01G541100 chr6A 592439369 592440304 935 True 242.50 313 84.6495 2345 2892 2 chr6A.!!$R4 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.103937 CGAAGGAGGTGGAGATGCTC 59.896 60.0 0.0 0.0 0.0 4.26 F
224 225 0.103937 GAAGGAGGTGGAGATGCTCG 59.896 60.0 0.0 0.0 0.0 5.03 F
444 445 0.108756 GGCGTTACTGGTCTCTGTCC 60.109 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1228 1333 0.173708 GAAGGTAGTCGACAGCAGGG 59.826 60.0 19.5 0.00 0.0 4.45 R
1232 1337 0.173708 CAGGGAAGGTAGTCGACAGC 59.826 60.0 19.5 13.05 0.0 4.40 R
2250 2472 0.038166 TTGGTCTTCCCTGTGCATCC 59.962 55.0 0.0 0.00 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.838486 GCCGAGCGTCTGTCTCCG 62.838 72.222 0.00 0.00 0.00 4.63
27 28 2.583593 GCGTCTGTCTCCGCCATC 60.584 66.667 0.00 0.00 43.96 3.51
28 29 2.278206 CGTCTGTCTCCGCCATCG 60.278 66.667 0.00 0.00 0.00 3.84
29 30 2.885861 GTCTGTCTCCGCCATCGT 59.114 61.111 0.00 0.00 0.00 3.73
30 31 1.712018 CGTCTGTCTCCGCCATCGTA 61.712 60.000 0.00 0.00 0.00 3.43
31 32 0.454600 GTCTGTCTCCGCCATCGTAA 59.545 55.000 0.00 0.00 0.00 3.18
32 33 0.738975 TCTGTCTCCGCCATCGTAAG 59.261 55.000 0.00 0.00 0.00 2.34
33 34 0.872021 CTGTCTCCGCCATCGTAAGC 60.872 60.000 0.00 0.00 37.18 3.09
49 50 2.027751 GCGACTGGCGGTAGATCC 59.972 66.667 11.00 0.00 41.29 3.36
50 51 2.782222 GCGACTGGCGGTAGATCCA 61.782 63.158 11.00 0.00 41.29 3.41
51 52 1.065928 CGACTGGCGGTAGATCCAC 59.934 63.158 0.00 0.00 36.03 4.02
52 53 1.065928 GACTGGCGGTAGATCCACG 59.934 63.158 0.00 0.00 35.57 4.94
56 57 2.353607 GCGGTAGATCCACGCGAG 60.354 66.667 15.93 4.16 43.98 5.03
84 85 4.803426 CGGCGGTGGACAGAGCTC 62.803 72.222 5.27 5.27 0.00 4.09
85 86 3.386237 GGCGGTGGACAGAGCTCT 61.386 66.667 11.45 11.45 0.00 4.09
86 87 2.183046 GCGGTGGACAGAGCTCTC 59.817 66.667 14.96 3.49 0.00 3.20
87 88 2.888863 CGGTGGACAGAGCTCTCC 59.111 66.667 14.96 14.28 0.00 3.71
88 89 2.888863 GGTGGACAGAGCTCTCCG 59.111 66.667 14.96 6.37 0.00 4.63
89 90 2.183046 GTGGACAGAGCTCTCCGC 59.817 66.667 14.96 16.24 39.57 5.54
90 91 3.071206 TGGACAGAGCTCTCCGCC 61.071 66.667 14.96 15.47 40.39 6.13
91 92 4.200283 GGACAGAGCTCTCCGCCG 62.200 72.222 14.96 4.70 40.39 6.46
92 93 4.863925 GACAGAGCTCTCCGCCGC 62.864 72.222 14.96 0.00 40.39 6.53
106 107 4.148825 CCGCGTCCCTCTCCCTTG 62.149 72.222 4.92 0.00 0.00 3.61
107 108 4.821589 CGCGTCCCTCTCCCTTGC 62.822 72.222 0.00 0.00 0.00 4.01
108 109 3.706373 GCGTCCCTCTCCCTTGCA 61.706 66.667 0.00 0.00 0.00 4.08
109 110 2.581354 CGTCCCTCTCCCTTGCAG 59.419 66.667 0.00 0.00 0.00 4.41
110 111 2.993853 GTCCCTCTCCCTTGCAGG 59.006 66.667 0.00 0.00 34.30 4.85
111 112 3.011517 TCCCTCTCCCTTGCAGGC 61.012 66.667 0.00 0.00 32.73 4.85
112 113 4.479993 CCCTCTCCCTTGCAGGCG 62.480 72.222 0.00 0.00 32.73 5.52
113 114 3.393970 CCTCTCCCTTGCAGGCGA 61.394 66.667 0.00 0.00 32.73 5.54
114 115 2.665000 CTCTCCCTTGCAGGCGAA 59.335 61.111 0.00 0.00 32.73 4.70
115 116 1.449246 CTCTCCCTTGCAGGCGAAG 60.449 63.158 0.00 0.00 32.73 3.79
130 131 1.363744 CGAAGCAACAGGACATCCTC 58.636 55.000 0.00 0.00 46.65 3.71
131 132 1.363744 GAAGCAACAGGACATCCTCG 58.636 55.000 0.00 0.00 46.65 4.63
132 133 0.976641 AAGCAACAGGACATCCTCGA 59.023 50.000 0.00 0.00 46.65 4.04
133 134 1.198713 AGCAACAGGACATCCTCGAT 58.801 50.000 0.00 0.00 46.65 3.59
134 135 1.556911 AGCAACAGGACATCCTCGATT 59.443 47.619 0.00 0.00 46.65 3.34
135 136 1.936547 GCAACAGGACATCCTCGATTC 59.063 52.381 0.00 0.00 46.65 2.52
136 137 2.555199 CAACAGGACATCCTCGATTCC 58.445 52.381 0.00 0.00 46.65 3.01
137 138 1.123928 ACAGGACATCCTCGATTCCC 58.876 55.000 0.00 0.00 46.65 3.97
138 139 1.343478 ACAGGACATCCTCGATTCCCT 60.343 52.381 0.00 0.00 46.65 4.20
139 140 1.342819 CAGGACATCCTCGATTCCCTC 59.657 57.143 0.00 0.00 46.65 4.30
140 141 0.682292 GGACATCCTCGATTCCCTCC 59.318 60.000 0.00 0.00 0.00 4.30
141 142 0.315568 GACATCCTCGATTCCCTCCG 59.684 60.000 0.00 0.00 0.00 4.63
142 143 1.115930 ACATCCTCGATTCCCTCCGG 61.116 60.000 0.00 0.00 0.00 5.14
143 144 1.115930 CATCCTCGATTCCCTCCGGT 61.116 60.000 0.00 0.00 0.00 5.28
144 145 0.398664 ATCCTCGATTCCCTCCGGTT 60.399 55.000 0.00 0.00 0.00 4.44
145 146 1.144057 CCTCGATTCCCTCCGGTTG 59.856 63.158 0.00 0.00 0.00 3.77
146 147 1.144057 CTCGATTCCCTCCGGTTGG 59.856 63.158 0.00 5.20 0.00 3.77
147 148 1.305465 TCGATTCCCTCCGGTTGGA 60.305 57.895 15.90 13.12 43.88 3.53
155 156 4.020617 TCCGGTTGGAGGCAGCTG 62.021 66.667 10.11 10.11 40.17 4.24
159 160 4.704833 GTTGGAGGCAGCTGCGGA 62.705 66.667 31.19 12.68 43.26 5.54
160 161 4.399395 TTGGAGGCAGCTGCGGAG 62.399 66.667 31.19 0.00 43.26 4.63
190 191 4.598894 CGCCGGCAGGAGATGGAG 62.599 72.222 28.98 0.98 39.96 3.86
191 192 4.247380 GCCGGCAGGAGATGGAGG 62.247 72.222 24.80 0.00 41.02 4.30
192 193 4.247380 CCGGCAGGAGATGGAGGC 62.247 72.222 0.00 0.00 41.02 4.70
193 194 3.473647 CGGCAGGAGATGGAGGCA 61.474 66.667 0.00 0.00 0.00 4.75
194 195 2.191641 GGCAGGAGATGGAGGCAC 59.808 66.667 0.00 0.00 0.00 5.01
195 196 2.673200 GGCAGGAGATGGAGGCACA 61.673 63.158 0.00 0.00 0.00 4.57
196 197 1.153208 GCAGGAGATGGAGGCACAG 60.153 63.158 0.00 0.00 0.00 3.66
197 198 1.153208 CAGGAGATGGAGGCACAGC 60.153 63.158 0.00 0.00 0.00 4.40
198 199 1.614525 AGGAGATGGAGGCACAGCA 60.615 57.895 0.59 0.00 0.00 4.41
199 200 1.153208 GGAGATGGAGGCACAGCAG 60.153 63.158 0.59 0.00 0.00 4.24
200 201 1.153208 GAGATGGAGGCACAGCAGG 60.153 63.158 0.59 0.00 0.00 4.85
201 202 2.827642 GATGGAGGCACAGCAGGC 60.828 66.667 0.00 0.00 0.00 4.85
217 218 4.821589 GCCGCGAAGGAGGTGGAG 62.822 72.222 8.23 0.00 45.00 3.86
218 219 3.068691 CCGCGAAGGAGGTGGAGA 61.069 66.667 8.23 0.00 45.00 3.71
219 220 2.427245 CCGCGAAGGAGGTGGAGAT 61.427 63.158 8.23 0.00 45.00 2.75
220 221 1.227089 CGCGAAGGAGGTGGAGATG 60.227 63.158 0.00 0.00 0.00 2.90
221 222 1.522580 GCGAAGGAGGTGGAGATGC 60.523 63.158 0.00 0.00 0.00 3.91
222 223 1.965754 GCGAAGGAGGTGGAGATGCT 61.966 60.000 0.00 0.00 0.00 3.79
223 224 0.103937 CGAAGGAGGTGGAGATGCTC 59.896 60.000 0.00 0.00 0.00 4.26
224 225 0.103937 GAAGGAGGTGGAGATGCTCG 59.896 60.000 0.00 0.00 0.00 5.03
225 226 1.965754 AAGGAGGTGGAGATGCTCGC 61.966 60.000 0.00 0.00 0.00 5.03
226 227 2.107953 GAGGTGGAGATGCTCGCC 59.892 66.667 0.00 0.00 36.83 5.54
227 228 2.364842 AGGTGGAGATGCTCGCCT 60.365 61.111 7.28 0.00 37.24 5.52
228 229 1.075970 AGGTGGAGATGCTCGCCTA 60.076 57.895 7.20 0.00 37.24 3.93
229 230 1.068250 GGTGGAGATGCTCGCCTAC 59.932 63.158 7.28 4.68 37.24 3.18
230 231 1.676678 GGTGGAGATGCTCGCCTACA 61.677 60.000 7.28 0.00 37.24 2.74
231 232 0.390860 GTGGAGATGCTCGCCTACAT 59.609 55.000 7.28 0.00 37.24 2.29
232 233 0.390492 TGGAGATGCTCGCCTACATG 59.610 55.000 7.28 0.00 37.24 3.21
233 234 0.320247 GGAGATGCTCGCCTACATGG 60.320 60.000 0.00 0.00 33.25 3.66
234 235 0.676184 GAGATGCTCGCCTACATGGA 59.324 55.000 0.00 0.00 38.35 3.41
235 236 1.274728 GAGATGCTCGCCTACATGGAT 59.725 52.381 0.00 0.00 38.35 3.41
236 237 1.001746 AGATGCTCGCCTACATGGATG 59.998 52.381 0.00 0.00 38.35 3.51
237 238 1.001293 GATGCTCGCCTACATGGATGA 59.999 52.381 0.00 0.00 38.35 2.92
238 239 0.390492 TGCTCGCCTACATGGATGAG 59.610 55.000 0.00 0.00 40.59 2.90
239 240 0.320247 GCTCGCCTACATGGATGAGG 60.320 60.000 0.00 0.00 39.08 3.86
240 241 1.043816 CTCGCCTACATGGATGAGGT 58.956 55.000 0.00 0.00 36.68 3.85
241 242 1.000283 CTCGCCTACATGGATGAGGTC 60.000 57.143 0.00 0.00 36.68 3.85
242 243 0.319040 CGCCTACATGGATGAGGTCG 60.319 60.000 0.00 3.26 38.35 4.79
243 244 1.040646 GCCTACATGGATGAGGTCGA 58.959 55.000 0.00 0.00 38.35 4.20
244 245 1.000283 GCCTACATGGATGAGGTCGAG 60.000 57.143 0.00 0.00 38.35 4.04
245 246 1.000283 CCTACATGGATGAGGTCGAGC 60.000 57.143 6.48 6.48 38.35 5.03
246 247 1.683385 CTACATGGATGAGGTCGAGCA 59.317 52.381 18.15 0.79 0.00 4.26
247 248 0.463204 ACATGGATGAGGTCGAGCAG 59.537 55.000 18.15 0.00 0.00 4.24
248 249 0.249784 CATGGATGAGGTCGAGCAGG 60.250 60.000 18.15 0.00 0.00 4.85
249 250 0.397675 ATGGATGAGGTCGAGCAGGA 60.398 55.000 18.15 0.00 0.00 3.86
250 251 1.039785 TGGATGAGGTCGAGCAGGAG 61.040 60.000 18.15 0.00 0.00 3.69
251 252 1.739049 GATGAGGTCGAGCAGGAGG 59.261 63.158 18.15 0.00 0.00 4.30
252 253 0.753479 GATGAGGTCGAGCAGGAGGA 60.753 60.000 18.15 0.00 0.00 3.71
253 254 0.754957 ATGAGGTCGAGCAGGAGGAG 60.755 60.000 18.15 0.00 0.00 3.69
254 255 2.043450 AGGTCGAGCAGGAGGAGG 60.043 66.667 18.15 0.00 0.00 4.30
255 256 3.151022 GGTCGAGCAGGAGGAGGG 61.151 72.222 10.30 0.00 0.00 4.30
256 257 2.363147 GTCGAGCAGGAGGAGGGT 60.363 66.667 0.00 0.00 0.00 4.34
257 258 2.363018 TCGAGCAGGAGGAGGGTG 60.363 66.667 0.00 0.00 0.00 4.61
258 259 3.465403 CGAGCAGGAGGAGGGTGG 61.465 72.222 0.00 0.00 0.00 4.61
259 260 3.086600 GAGCAGGAGGAGGGTGGG 61.087 72.222 0.00 0.00 0.00 4.61
260 261 3.615811 AGCAGGAGGAGGGTGGGA 61.616 66.667 0.00 0.00 0.00 4.37
261 262 3.403558 GCAGGAGGAGGGTGGGAC 61.404 72.222 0.00 0.00 0.00 4.46
262 263 3.077556 CAGGAGGAGGGTGGGACG 61.078 72.222 0.00 0.00 0.00 4.79
263 264 4.400251 AGGAGGAGGGTGGGACGG 62.400 72.222 0.00 0.00 0.00 4.79
283 284 3.217743 CCCTCCTACCCGCTCGTC 61.218 72.222 0.00 0.00 0.00 4.20
284 285 3.217743 CCTCCTACCCGCTCGTCC 61.218 72.222 0.00 0.00 0.00 4.79
285 286 2.439701 CTCCTACCCGCTCGTCCA 60.440 66.667 0.00 0.00 0.00 4.02
286 287 2.439701 TCCTACCCGCTCGTCCAG 60.440 66.667 0.00 0.00 0.00 3.86
287 288 4.208686 CCTACCCGCTCGTCCAGC 62.209 72.222 0.00 0.00 45.85 4.85
288 289 4.208686 CTACCCGCTCGTCCAGCC 62.209 72.222 0.00 0.00 46.74 4.85
310 311 3.487202 CCCGGCATTGTCGTCGTG 61.487 66.667 10.10 0.00 0.00 4.35
311 312 3.487202 CCGGCATTGTCGTCGTGG 61.487 66.667 10.10 0.00 0.00 4.94
312 313 2.431771 CGGCATTGTCGTCGTGGA 60.432 61.111 1.71 0.00 0.00 4.02
313 314 2.726691 CGGCATTGTCGTCGTGGAC 61.727 63.158 1.71 2.36 37.45 4.02
314 315 1.666553 GGCATTGTCGTCGTGGACA 60.667 57.895 7.11 7.11 44.74 4.02
315 316 1.019278 GGCATTGTCGTCGTGGACAT 61.019 55.000 11.05 1.69 45.62 3.06
316 317 0.370273 GCATTGTCGTCGTGGACATC 59.630 55.000 11.05 2.72 45.62 3.06
317 318 1.996292 CATTGTCGTCGTGGACATCT 58.004 50.000 11.05 1.80 45.62 2.90
318 319 1.920574 CATTGTCGTCGTGGACATCTC 59.079 52.381 11.05 0.00 45.62 2.75
319 320 0.242825 TTGTCGTCGTGGACATCTCC 59.757 55.000 11.05 0.00 45.62 3.71
320 321 1.226323 GTCGTCGTGGACATCTCCG 60.226 63.158 0.00 0.00 39.88 4.63
321 322 1.376295 TCGTCGTGGACATCTCCGA 60.376 57.895 0.00 0.00 39.88 4.55
322 323 1.226323 CGTCGTGGACATCTCCGAC 60.226 63.158 11.37 11.37 44.51 4.79
323 324 1.226323 GTCGTGGACATCTCCGACG 60.226 63.158 5.91 5.91 40.04 5.12
324 325 1.376295 TCGTGGACATCTCCGACGA 60.376 57.895 9.43 9.43 42.64 4.20
325 326 1.226323 CGTGGACATCTCCGACGAC 60.226 63.158 0.00 0.00 40.59 4.34
326 327 1.226323 GTGGACATCTCCGACGACG 60.226 63.158 0.00 0.00 39.88 5.12
327 328 1.376295 TGGACATCTCCGACGACGA 60.376 57.895 9.28 0.00 39.88 4.20
328 329 0.956902 TGGACATCTCCGACGACGAA 60.957 55.000 9.28 0.00 39.88 3.85
329 330 0.248134 GGACATCTCCGACGACGAAG 60.248 60.000 9.28 0.00 42.66 3.79
330 331 0.725686 GACATCTCCGACGACGAAGA 59.274 55.000 9.28 3.16 37.29 2.87
331 332 0.727970 ACATCTCCGACGACGAAGAG 59.272 55.000 9.28 7.97 36.19 2.85
332 333 0.727970 CATCTCCGACGACGAAGAGT 59.272 55.000 9.28 0.00 36.19 3.24
333 334 1.931841 CATCTCCGACGACGAAGAGTA 59.068 52.381 9.28 0.00 36.19 2.59
334 335 2.084610 TCTCCGACGACGAAGAGTAA 57.915 50.000 9.28 0.00 42.66 2.24
335 336 1.728971 TCTCCGACGACGAAGAGTAAC 59.271 52.381 9.28 0.00 42.66 2.50
336 337 1.731160 CTCCGACGACGAAGAGTAACT 59.269 52.381 9.28 0.00 42.66 2.24
337 338 2.926200 CTCCGACGACGAAGAGTAACTA 59.074 50.000 9.28 0.00 42.66 2.24
338 339 2.926200 TCCGACGACGAAGAGTAACTAG 59.074 50.000 9.28 0.00 42.66 2.57
339 340 2.030213 CCGACGACGAAGAGTAACTAGG 59.970 54.545 9.28 0.00 42.66 3.02
340 341 2.030213 CGACGACGAAGAGTAACTAGGG 59.970 54.545 0.00 0.00 42.66 3.53
341 342 3.006247 GACGACGAAGAGTAACTAGGGT 58.994 50.000 0.00 0.00 0.00 4.34
342 343 4.184629 GACGACGAAGAGTAACTAGGGTA 58.815 47.826 0.00 0.00 0.00 3.69
343 344 4.187694 ACGACGAAGAGTAACTAGGGTAG 58.812 47.826 0.00 0.00 0.00 3.18
344 345 4.187694 CGACGAAGAGTAACTAGGGTAGT 58.812 47.826 0.00 0.00 41.73 2.73
345 346 5.105310 ACGACGAAGAGTAACTAGGGTAGTA 60.105 44.000 0.00 0.00 38.26 1.82
346 347 5.233263 CGACGAAGAGTAACTAGGGTAGTAC 59.767 48.000 0.00 0.00 38.26 2.73
347 348 5.112686 ACGAAGAGTAACTAGGGTAGTACG 58.887 45.833 0.00 0.00 38.26 3.67
348 349 5.112686 CGAAGAGTAACTAGGGTAGTACGT 58.887 45.833 0.00 0.00 38.26 3.57
349 350 6.127423 ACGAAGAGTAACTAGGGTAGTACGTA 60.127 42.308 0.00 0.00 38.26 3.57
350 351 6.419413 CGAAGAGTAACTAGGGTAGTACGTAG 59.581 46.154 0.00 6.73 38.26 3.51
351 352 6.168270 AGAGTAACTAGGGTAGTACGTAGG 57.832 45.833 0.00 0.00 38.26 3.18
352 353 5.900123 AGAGTAACTAGGGTAGTACGTAGGA 59.100 44.000 0.00 0.00 38.26 2.94
353 354 6.556874 AGAGTAACTAGGGTAGTACGTAGGAT 59.443 42.308 0.00 0.00 38.26 3.24
354 355 7.071824 AGAGTAACTAGGGTAGTACGTAGGATT 59.928 40.741 0.00 3.09 38.26 3.01
355 356 7.578203 AGTAACTAGGGTAGTACGTAGGATTT 58.422 38.462 0.00 2.59 38.26 2.17
356 357 8.055790 AGTAACTAGGGTAGTACGTAGGATTTT 58.944 37.037 0.00 2.34 38.26 1.82
357 358 7.724490 AACTAGGGTAGTACGTAGGATTTTT 57.276 36.000 0.00 0.00 38.26 1.94
381 382 7.830940 TTTTGCATGCTTTTTATGGATGTAG 57.169 32.000 20.33 0.00 35.99 2.74
382 383 5.518848 TGCATGCTTTTTATGGATGTAGG 57.481 39.130 20.33 0.00 35.99 3.18
383 384 4.341806 TGCATGCTTTTTATGGATGTAGGG 59.658 41.667 20.33 0.00 35.99 3.53
384 385 4.262164 GCATGCTTTTTATGGATGTAGGGG 60.262 45.833 11.37 0.00 35.99 4.79
385 386 4.871871 TGCTTTTTATGGATGTAGGGGA 57.128 40.909 0.00 0.00 0.00 4.81
386 387 5.402054 TGCTTTTTATGGATGTAGGGGAT 57.598 39.130 0.00 0.00 0.00 3.85
387 388 5.139727 TGCTTTTTATGGATGTAGGGGATG 58.860 41.667 0.00 0.00 0.00 3.51
388 389 5.103728 TGCTTTTTATGGATGTAGGGGATGA 60.104 40.000 0.00 0.00 0.00 2.92
389 390 5.833131 GCTTTTTATGGATGTAGGGGATGAA 59.167 40.000 0.00 0.00 0.00 2.57
390 391 6.323739 GCTTTTTATGGATGTAGGGGATGAAA 59.676 38.462 0.00 0.00 0.00 2.69
391 392 7.015584 GCTTTTTATGGATGTAGGGGATGAAAT 59.984 37.037 0.00 0.00 0.00 2.17
392 393 9.586732 CTTTTTATGGATGTAGGGGATGAAATA 57.413 33.333 0.00 0.00 0.00 1.40
394 395 9.532494 TTTTATGGATGTAGGGGATGAAATATG 57.468 33.333 0.00 0.00 0.00 1.78
395 396 6.975471 ATGGATGTAGGGGATGAAATATGA 57.025 37.500 0.00 0.00 0.00 2.15
396 397 6.378661 TGGATGTAGGGGATGAAATATGAG 57.621 41.667 0.00 0.00 0.00 2.90
397 398 6.090870 TGGATGTAGGGGATGAAATATGAGA 58.909 40.000 0.00 0.00 0.00 3.27
398 399 6.214208 TGGATGTAGGGGATGAAATATGAGAG 59.786 42.308 0.00 0.00 0.00 3.20
399 400 6.441924 GGATGTAGGGGATGAAATATGAGAGA 59.558 42.308 0.00 0.00 0.00 3.10
400 401 7.038017 GGATGTAGGGGATGAAATATGAGAGAA 60.038 40.741 0.00 0.00 0.00 2.87
401 402 7.308450 TGTAGGGGATGAAATATGAGAGAAG 57.692 40.000 0.00 0.00 0.00 2.85
402 403 5.240013 AGGGGATGAAATATGAGAGAAGC 57.760 43.478 0.00 0.00 0.00 3.86
403 404 3.999663 GGGGATGAAATATGAGAGAAGCG 59.000 47.826 0.00 0.00 0.00 4.68
404 405 3.999663 GGGATGAAATATGAGAGAAGCGG 59.000 47.826 0.00 0.00 0.00 5.52
405 406 4.262635 GGGATGAAATATGAGAGAAGCGGA 60.263 45.833 0.00 0.00 0.00 5.54
406 407 5.486526 GGATGAAATATGAGAGAAGCGGAT 58.513 41.667 0.00 0.00 0.00 4.18
407 408 5.350914 GGATGAAATATGAGAGAAGCGGATG 59.649 44.000 0.00 0.00 0.00 3.51
408 409 4.060900 TGAAATATGAGAGAAGCGGATGC 58.939 43.478 0.00 0.00 43.24 3.91
409 410 3.758755 AATATGAGAGAAGCGGATGCA 57.241 42.857 0.00 0.00 46.23 3.96
410 411 3.758755 ATATGAGAGAAGCGGATGCAA 57.241 42.857 0.00 0.00 46.23 4.08
411 412 2.408271 ATGAGAGAAGCGGATGCAAA 57.592 45.000 0.00 0.00 46.23 3.68
412 413 1.730501 TGAGAGAAGCGGATGCAAAG 58.269 50.000 0.00 0.00 46.23 2.77
413 414 1.002430 TGAGAGAAGCGGATGCAAAGT 59.998 47.619 0.00 0.00 46.23 2.66
414 415 1.396301 GAGAGAAGCGGATGCAAAGTG 59.604 52.381 0.00 0.00 46.23 3.16
415 416 0.449388 GAGAAGCGGATGCAAAGTGG 59.551 55.000 0.00 0.00 46.23 4.00
416 417 1.153958 GAAGCGGATGCAAAGTGGC 60.154 57.895 0.00 0.00 46.23 5.01
417 418 1.589716 GAAGCGGATGCAAAGTGGCT 61.590 55.000 0.00 0.00 46.23 4.75
418 419 0.322456 AAGCGGATGCAAAGTGGCTA 60.322 50.000 0.00 0.00 46.23 3.93
419 420 0.322456 AGCGGATGCAAAGTGGCTAA 60.322 50.000 0.00 0.00 46.23 3.09
420 421 0.740737 GCGGATGCAAAGTGGCTAAT 59.259 50.000 0.00 0.00 42.15 1.73
421 422 1.134946 GCGGATGCAAAGTGGCTAATT 59.865 47.619 0.00 0.00 42.15 1.40
422 423 2.417243 GCGGATGCAAAGTGGCTAATTT 60.417 45.455 0.00 0.00 42.15 1.82
423 424 3.181397 CGGATGCAAAGTGGCTAATTTG 58.819 45.455 17.34 17.34 42.90 2.32
424 425 3.119531 CGGATGCAAAGTGGCTAATTTGA 60.120 43.478 24.44 11.30 42.72 2.69
425 426 4.427312 GGATGCAAAGTGGCTAATTTGAG 58.573 43.478 24.44 1.81 42.72 3.02
426 427 3.940209 TGCAAAGTGGCTAATTTGAGG 57.060 42.857 24.44 1.10 42.72 3.86
427 428 2.029110 TGCAAAGTGGCTAATTTGAGGC 60.029 45.455 24.44 11.27 42.72 4.70
428 429 2.867429 CAAAGTGGCTAATTTGAGGCG 58.133 47.619 16.79 0.00 42.72 5.52
429 430 2.200373 AAGTGGCTAATTTGAGGCGT 57.800 45.000 0.00 0.00 44.78 5.68
430 431 2.200373 AGTGGCTAATTTGAGGCGTT 57.800 45.000 0.00 0.00 44.78 4.84
431 432 3.343941 AGTGGCTAATTTGAGGCGTTA 57.656 42.857 0.00 0.00 44.78 3.18
432 433 3.007635 AGTGGCTAATTTGAGGCGTTAC 58.992 45.455 0.00 0.00 44.78 2.50
433 434 3.007635 GTGGCTAATTTGAGGCGTTACT 58.992 45.455 0.00 0.00 44.78 2.24
434 435 3.006940 TGGCTAATTTGAGGCGTTACTG 58.993 45.455 0.00 0.00 44.78 2.74
435 436 2.354821 GGCTAATTTGAGGCGTTACTGG 59.645 50.000 0.00 0.00 31.65 4.00
436 437 3.007635 GCTAATTTGAGGCGTTACTGGT 58.992 45.455 0.00 0.00 0.00 4.00
437 438 3.063588 GCTAATTTGAGGCGTTACTGGTC 59.936 47.826 0.00 0.00 0.00 4.02
438 439 3.418684 AATTTGAGGCGTTACTGGTCT 57.581 42.857 0.00 0.00 0.00 3.85
439 440 2.450609 TTTGAGGCGTTACTGGTCTC 57.549 50.000 0.00 0.00 36.68 3.36
440 441 1.629043 TTGAGGCGTTACTGGTCTCT 58.371 50.000 0.00 0.00 37.06 3.10
441 442 0.888619 TGAGGCGTTACTGGTCTCTG 59.111 55.000 0.00 0.00 37.06 3.35
442 443 0.889306 GAGGCGTTACTGGTCTCTGT 59.111 55.000 0.00 0.00 33.41 3.41
443 444 0.889306 AGGCGTTACTGGTCTCTGTC 59.111 55.000 0.00 0.00 0.00 3.51
444 445 0.108756 GGCGTTACTGGTCTCTGTCC 60.109 60.000 0.00 0.00 0.00 4.02
445 446 0.456312 GCGTTACTGGTCTCTGTCCG 60.456 60.000 0.00 0.00 0.00 4.79
446 447 0.456312 CGTTACTGGTCTCTGTCCGC 60.456 60.000 0.00 0.00 0.00 5.54
447 448 0.456312 GTTACTGGTCTCTGTCCGCG 60.456 60.000 0.00 0.00 0.00 6.46
448 449 1.592400 TTACTGGTCTCTGTCCGCGG 61.592 60.000 22.12 22.12 0.00 6.46
449 450 2.473891 TACTGGTCTCTGTCCGCGGA 62.474 60.000 27.28 27.28 0.00 5.54
450 451 2.362503 TGGTCTCTGTCCGCGGAT 60.363 61.111 33.58 0.00 0.00 4.18
451 452 2.105128 GGTCTCTGTCCGCGGATG 59.895 66.667 33.58 25.90 0.00 3.51
452 453 2.711922 GGTCTCTGTCCGCGGATGT 61.712 63.158 33.58 0.00 0.00 3.06
453 454 1.226717 GTCTCTGTCCGCGGATGTC 60.227 63.158 33.58 19.56 0.00 3.06
454 455 1.378646 TCTCTGTCCGCGGATGTCT 60.379 57.895 33.58 0.00 0.00 3.41
455 456 1.226802 CTCTGTCCGCGGATGTCTG 60.227 63.158 33.58 21.51 0.00 3.51
456 457 1.657751 CTCTGTCCGCGGATGTCTGA 61.658 60.000 33.58 24.31 0.00 3.27
457 458 1.226802 CTGTCCGCGGATGTCTGAG 60.227 63.158 33.58 15.82 0.00 3.35
458 459 2.105128 GTCCGCGGATGTCTGAGG 59.895 66.667 33.58 5.36 42.66 3.86
459 460 3.147595 TCCGCGGATGTCTGAGGG 61.148 66.667 27.28 0.00 41.76 4.30
460 461 4.227134 CCGCGGATGTCTGAGGGG 62.227 72.222 24.07 0.00 38.37 4.79
461 462 4.899239 CGCGGATGTCTGAGGGGC 62.899 72.222 0.00 0.00 0.00 5.80
462 463 4.554036 GCGGATGTCTGAGGGGCC 62.554 72.222 0.00 0.00 0.00 5.80
463 464 2.765807 CGGATGTCTGAGGGGCCT 60.766 66.667 0.84 0.00 0.00 5.19
464 465 1.457643 CGGATGTCTGAGGGGCCTA 60.458 63.158 0.84 0.00 0.00 3.93
465 466 1.048724 CGGATGTCTGAGGGGCCTAA 61.049 60.000 0.84 0.00 0.00 2.69
466 467 1.439543 GGATGTCTGAGGGGCCTAAT 58.560 55.000 0.84 0.00 0.00 1.73
467 468 1.777272 GGATGTCTGAGGGGCCTAATT 59.223 52.381 0.84 0.00 0.00 1.40
468 469 2.175715 GGATGTCTGAGGGGCCTAATTT 59.824 50.000 0.84 0.00 0.00 1.82
469 470 2.806945 TGTCTGAGGGGCCTAATTTG 57.193 50.000 0.84 0.00 0.00 2.32
470 471 1.340991 TGTCTGAGGGGCCTAATTTGC 60.341 52.381 0.84 0.00 0.00 3.68
471 472 0.998928 TCTGAGGGGCCTAATTTGCA 59.001 50.000 0.84 0.00 0.00 4.08
472 473 1.357420 TCTGAGGGGCCTAATTTGCAA 59.643 47.619 0.84 0.00 0.00 4.08
473 474 2.178580 CTGAGGGGCCTAATTTGCAAA 58.821 47.619 15.44 15.44 0.00 3.68
474 475 2.167075 CTGAGGGGCCTAATTTGCAAAG 59.833 50.000 18.19 3.73 0.00 2.77
475 476 2.179427 GAGGGGCCTAATTTGCAAAGT 58.821 47.619 18.19 17.64 0.00 2.66
476 477 2.166459 GAGGGGCCTAATTTGCAAAGTC 59.834 50.000 16.40 3.68 0.00 3.01
477 478 1.207089 GGGGCCTAATTTGCAAAGTCC 59.793 52.381 16.40 13.03 0.00 3.85
478 479 1.135112 GGGCCTAATTTGCAAAGTCCG 60.135 52.381 16.40 8.34 0.00 4.79
479 480 1.135112 GGCCTAATTTGCAAAGTCCGG 60.135 52.381 16.40 17.55 0.00 5.14
480 481 1.735700 GCCTAATTTGCAAAGTCCGGC 60.736 52.381 26.36 26.36 0.00 6.13
481 482 1.818674 CCTAATTTGCAAAGTCCGGCT 59.181 47.619 16.40 0.00 0.00 5.52
482 483 2.415893 CCTAATTTGCAAAGTCCGGCTG 60.416 50.000 16.40 1.31 0.00 4.85
483 484 1.039856 AATTTGCAAAGTCCGGCTGT 58.960 45.000 18.19 0.00 0.00 4.40
484 485 1.904287 ATTTGCAAAGTCCGGCTGTA 58.096 45.000 18.19 0.00 0.00 2.74
485 486 1.234821 TTTGCAAAGTCCGGCTGTAG 58.765 50.000 8.05 0.00 0.00 2.74
486 487 0.394938 TTGCAAAGTCCGGCTGTAGA 59.605 50.000 0.00 0.00 0.00 2.59
487 488 0.613260 TGCAAAGTCCGGCTGTAGAT 59.387 50.000 0.00 0.00 0.00 1.98
488 489 1.009829 GCAAAGTCCGGCTGTAGATG 58.990 55.000 0.00 0.00 0.00 2.90
489 490 1.009829 CAAAGTCCGGCTGTAGATGC 58.990 55.000 0.00 0.00 0.00 3.91
490 491 0.905357 AAAGTCCGGCTGTAGATGCT 59.095 50.000 0.00 0.00 0.00 3.79
491 492 0.461961 AAGTCCGGCTGTAGATGCTC 59.538 55.000 0.00 0.00 0.00 4.26
492 493 0.396417 AGTCCGGCTGTAGATGCTCT 60.396 55.000 0.00 0.00 0.00 4.09
493 494 0.461961 GTCCGGCTGTAGATGCTCTT 59.538 55.000 0.00 0.00 0.00 2.85
494 495 1.681793 GTCCGGCTGTAGATGCTCTTA 59.318 52.381 0.00 0.00 0.00 2.10
495 496 1.957177 TCCGGCTGTAGATGCTCTTAG 59.043 52.381 0.00 0.00 0.00 2.18
496 497 1.604185 CCGGCTGTAGATGCTCTTAGC 60.604 57.143 0.00 10.69 42.82 3.09
497 498 1.777101 GGCTGTAGATGCTCTTAGCG 58.223 55.000 11.86 0.00 46.26 4.26
498 499 1.604185 GGCTGTAGATGCTCTTAGCGG 60.604 57.143 11.86 0.00 46.26 5.52
499 500 1.067821 GCTGTAGATGCTCTTAGCGGT 59.932 52.381 0.00 0.00 46.26 5.68
500 501 2.293677 GCTGTAGATGCTCTTAGCGGTA 59.706 50.000 0.00 0.00 46.26 4.02
501 502 3.854045 GCTGTAGATGCTCTTAGCGGTAC 60.854 52.174 0.00 0.00 46.26 3.34
502 503 3.284617 TGTAGATGCTCTTAGCGGTACA 58.715 45.455 0.00 0.00 46.26 2.90
503 504 2.873133 AGATGCTCTTAGCGGTACAC 57.127 50.000 0.00 0.00 46.26 2.90
504 505 2.100197 AGATGCTCTTAGCGGTACACA 58.900 47.619 0.00 0.00 46.26 3.72
512 513 4.643463 TCTTAGCGGTACACAAAATGGAA 58.357 39.130 0.00 0.00 0.00 3.53
513 514 5.064558 TCTTAGCGGTACACAAAATGGAAA 58.935 37.500 0.00 0.00 0.00 3.13
543 544 2.424302 CGGACGGGGTGACACTTT 59.576 61.111 5.39 0.00 0.00 2.66
564 565 3.319198 GGAGGGCCCAACACGAGA 61.319 66.667 27.56 0.00 34.14 4.04
565 566 2.047179 GAGGGCCCAACACGAGAC 60.047 66.667 27.56 0.00 0.00 3.36
585 586 2.777692 ACAAGGAAGGAGACACAAAGGA 59.222 45.455 0.00 0.00 0.00 3.36
615 616 3.740115 CAAAAGGGAAGACGGAAAGAGA 58.260 45.455 0.00 0.00 0.00 3.10
642 643 0.708802 AGGACGGTCCTTTCTCCCTA 59.291 55.000 23.90 0.00 46.91 3.53
643 644 1.078324 AGGACGGTCCTTTCTCCCTAA 59.922 52.381 23.90 0.00 46.91 2.69
644 645 1.481363 GGACGGTCCTTTCTCCCTAAG 59.519 57.143 19.92 0.00 32.53 2.18
645 646 0.903236 ACGGTCCTTTCTCCCTAAGC 59.097 55.000 0.00 0.00 0.00 3.09
646 647 1.196012 CGGTCCTTTCTCCCTAAGCT 58.804 55.000 0.00 0.00 0.00 3.74
681 691 2.097825 GCCAACCAGCATCTTCTCATT 58.902 47.619 0.00 0.00 0.00 2.57
682 692 2.098770 GCCAACCAGCATCTTCTCATTC 59.901 50.000 0.00 0.00 0.00 2.67
683 693 2.686915 CCAACCAGCATCTTCTCATTCC 59.313 50.000 0.00 0.00 0.00 3.01
686 696 2.579860 ACCAGCATCTTCTCATTCCCTT 59.420 45.455 0.00 0.00 0.00 3.95
687 697 3.011032 ACCAGCATCTTCTCATTCCCTTT 59.989 43.478 0.00 0.00 0.00 3.11
706 764 5.819901 CCCTTTTTAACTTTCACCATGCAAA 59.180 36.000 0.00 0.00 0.00 3.68
707 765 6.317391 CCCTTTTTAACTTTCACCATGCAAAA 59.683 34.615 0.00 0.00 0.00 2.44
744 802 4.067192 TGGAATATGCATGTTCTCATCCG 58.933 43.478 28.36 0.00 31.15 4.18
766 824 3.199880 ACACAGGTGATAATAGGCAGC 57.800 47.619 6.40 0.00 0.00 5.25
797 855 5.163426 GGCACATTCCATATGTTTCCATTCA 60.163 40.000 1.24 0.00 32.29 2.57
884 943 1.279496 CACCATCTGTCCTCCCTTCA 58.721 55.000 0.00 0.00 0.00 3.02
890 949 2.977808 TCTGTCCTCCCTTCATATCCC 58.022 52.381 0.00 0.00 0.00 3.85
891 950 1.981495 CTGTCCTCCCTTCATATCCCC 59.019 57.143 0.00 0.00 0.00 4.81
892 951 1.585592 TGTCCTCCCTTCATATCCCCT 59.414 52.381 0.00 0.00 0.00 4.79
899 958 3.472848 TCCCTTCATATCCCCTTCTCTCT 59.527 47.826 0.00 0.00 0.00 3.10
903 962 5.392995 CTTCATATCCCCTTCTCTCTCTCA 58.607 45.833 0.00 0.00 0.00 3.27
904 963 5.613698 TCATATCCCCTTCTCTCTCTCAT 57.386 43.478 0.00 0.00 0.00 2.90
905 964 6.726733 TCATATCCCCTTCTCTCTCTCATA 57.273 41.667 0.00 0.00 0.00 2.15
906 965 6.489603 TCATATCCCCTTCTCTCTCTCATAC 58.510 44.000 0.00 0.00 0.00 2.39
907 966 4.823364 ATCCCCTTCTCTCTCTCATACA 57.177 45.455 0.00 0.00 0.00 2.29
908 967 3.904717 TCCCCTTCTCTCTCTCATACAC 58.095 50.000 0.00 0.00 0.00 2.90
909 968 3.269643 TCCCCTTCTCTCTCTCATACACA 59.730 47.826 0.00 0.00 0.00 3.72
910 969 4.026744 CCCCTTCTCTCTCTCATACACAA 58.973 47.826 0.00 0.00 0.00 3.33
911 970 4.142049 CCCCTTCTCTCTCTCATACACAAC 60.142 50.000 0.00 0.00 0.00 3.32
912 971 4.142049 CCCTTCTCTCTCTCATACACAACC 60.142 50.000 0.00 0.00 0.00 3.77
913 972 4.439426 CCTTCTCTCTCTCATACACAACCG 60.439 50.000 0.00 0.00 0.00 4.44
914 973 3.951663 TCTCTCTCTCATACACAACCGA 58.048 45.455 0.00 0.00 0.00 4.69
915 974 3.690139 TCTCTCTCTCATACACAACCGAC 59.310 47.826 0.00 0.00 0.00 4.79
916 975 2.753452 TCTCTCTCATACACAACCGACC 59.247 50.000 0.00 0.00 0.00 4.79
934 993 2.234168 GACCTCTACGGCTTCCTTCTTT 59.766 50.000 0.00 0.00 35.61 2.52
936 995 3.003480 CCTCTACGGCTTCCTTCTTTTG 58.997 50.000 0.00 0.00 0.00 2.44
937 996 2.416893 CTCTACGGCTTCCTTCTTTTGC 59.583 50.000 0.00 0.00 0.00 3.68
943 1045 2.174360 GCTTCCTTCTTTTGCCATCCT 58.826 47.619 0.00 0.00 0.00 3.24
974 1076 1.420138 AGGAGACGAGAGGAGAGATCC 59.580 57.143 0.00 0.00 0.00 3.36
976 1078 2.422235 GGAGACGAGAGGAGAGATCCAA 60.422 54.545 0.00 0.00 0.00 3.53
977 1079 2.878406 GAGACGAGAGGAGAGATCCAAG 59.122 54.545 0.00 0.00 0.00 3.61
978 1080 2.507886 AGACGAGAGGAGAGATCCAAGA 59.492 50.000 0.00 0.00 0.00 3.02
979 1081 2.878406 GACGAGAGGAGAGATCCAAGAG 59.122 54.545 0.00 0.00 0.00 2.85
980 1082 1.608590 CGAGAGGAGAGATCCAAGAGC 59.391 57.143 0.00 0.00 0.00 4.09
981 1083 2.665165 GAGAGGAGAGATCCAAGAGCA 58.335 52.381 0.00 0.00 0.00 4.26
982 1084 2.624838 GAGAGGAGAGATCCAAGAGCAG 59.375 54.545 0.00 0.00 0.00 4.24
983 1085 2.244510 AGAGGAGAGATCCAAGAGCAGA 59.755 50.000 0.00 0.00 0.00 4.26
984 1086 2.624838 GAGGAGAGATCCAAGAGCAGAG 59.375 54.545 0.00 0.00 0.00 3.35
985 1087 2.244510 AGGAGAGATCCAAGAGCAGAGA 59.755 50.000 0.00 0.00 0.00 3.10
986 1088 2.362077 GGAGAGATCCAAGAGCAGAGAC 59.638 54.545 0.00 0.00 0.00 3.36
987 1089 3.023119 GAGAGATCCAAGAGCAGAGACA 58.977 50.000 0.00 0.00 0.00 3.41
988 1090 3.439154 AGAGATCCAAGAGCAGAGACAA 58.561 45.455 0.00 0.00 0.00 3.18
989 1091 3.448301 AGAGATCCAAGAGCAGAGACAAG 59.552 47.826 0.00 0.00 0.00 3.16
990 1092 3.172339 AGATCCAAGAGCAGAGACAAGT 58.828 45.455 0.00 0.00 0.00 3.16
991 1093 2.827800 TCCAAGAGCAGAGACAAGTG 57.172 50.000 0.00 0.00 0.00 3.16
992 1094 2.319844 TCCAAGAGCAGAGACAAGTGA 58.680 47.619 0.00 0.00 0.00 3.41
993 1095 2.902486 TCCAAGAGCAGAGACAAGTGAT 59.098 45.455 0.00 0.00 0.00 3.06
994 1096 3.326006 TCCAAGAGCAGAGACAAGTGATT 59.674 43.478 0.00 0.00 0.00 2.57
1113 1215 3.917760 CTCCCGCCGGATCTCCAC 61.918 72.222 5.05 0.00 37.60 4.02
1175 1280 1.136110 CTTCTCTCCGCCTTCTTCTCC 59.864 57.143 0.00 0.00 0.00 3.71
1176 1281 0.333312 TCTCTCCGCCTTCTTCTCCT 59.667 55.000 0.00 0.00 0.00 3.69
1177 1282 0.744281 CTCTCCGCCTTCTTCTCCTC 59.256 60.000 0.00 0.00 0.00 3.71
1178 1283 0.684805 TCTCCGCCTTCTTCTCCTCC 60.685 60.000 0.00 0.00 0.00 4.30
1179 1284 0.972983 CTCCGCCTTCTTCTCCTCCA 60.973 60.000 0.00 0.00 0.00 3.86
1180 1285 0.544357 TCCGCCTTCTTCTCCTCCAA 60.544 55.000 0.00 0.00 0.00 3.53
1181 1286 0.543749 CCGCCTTCTTCTCCTCCAAT 59.456 55.000 0.00 0.00 0.00 3.16
1182 1287 1.762957 CCGCCTTCTTCTCCTCCAATA 59.237 52.381 0.00 0.00 0.00 1.90
1183 1288 2.483889 CCGCCTTCTTCTCCTCCAATAC 60.484 54.545 0.00 0.00 0.00 1.89
1184 1289 2.168521 CGCCTTCTTCTCCTCCAATACA 59.831 50.000 0.00 0.00 0.00 2.29
1197 1302 3.048600 TCCAATACATCTTCCTCCCTGG 58.951 50.000 0.00 0.00 37.10 4.45
1200 1305 2.270434 TACATCTTCCTCCCTGGCTT 57.730 50.000 0.00 0.00 35.26 4.35
1228 1333 3.118905 AGTCTTGACTGAGAAACTGCC 57.881 47.619 2.11 0.00 0.00 4.85
1231 1336 1.072965 CTTGACTGAGAAACTGCCCCT 59.927 52.381 0.00 0.00 0.00 4.79
1232 1337 0.397941 TGACTGAGAAACTGCCCCTG 59.602 55.000 0.00 0.00 0.00 4.45
1233 1338 0.957888 GACTGAGAAACTGCCCCTGC 60.958 60.000 0.00 0.00 38.26 4.85
1234 1339 1.377994 CTGAGAAACTGCCCCTGCT 59.622 57.895 0.00 0.00 38.71 4.24
1235 1340 0.959372 CTGAGAAACTGCCCCTGCTG 60.959 60.000 0.00 0.00 41.75 4.41
1240 1345 4.008933 ACTGCCCCTGCTGTCGAC 62.009 66.667 9.11 9.11 45.30 4.20
1242 1347 2.283604 TGCCCCTGCTGTCGACTA 60.284 61.111 17.92 2.26 38.71 2.59
1243 1348 2.184579 GCCCCTGCTGTCGACTAC 59.815 66.667 17.92 9.23 33.53 2.73
1244 1349 2.893398 CCCCTGCTGTCGACTACC 59.107 66.667 17.92 5.47 0.00 3.18
1245 1350 1.682684 CCCCTGCTGTCGACTACCT 60.683 63.158 17.92 0.00 0.00 3.08
1247 1352 0.173708 CCCTGCTGTCGACTACCTTC 59.826 60.000 17.92 0.23 0.00 3.46
1249 1354 0.173708 CTGCTGTCGACTACCTTCCC 59.826 60.000 17.92 0.00 0.00 3.97
1250 1355 0.251653 TGCTGTCGACTACCTTCCCT 60.252 55.000 17.92 0.00 0.00 4.20
1251 1356 0.173708 GCTGTCGACTACCTTCCCTG 59.826 60.000 17.92 0.00 0.00 4.45
1252 1357 1.835494 CTGTCGACTACCTTCCCTGA 58.165 55.000 17.92 0.00 0.00 3.86
1253 1358 2.379972 CTGTCGACTACCTTCCCTGAT 58.620 52.381 17.92 0.00 0.00 2.90
1266 1371 1.482182 TCCCTGATGAATCCAGACGTG 59.518 52.381 0.00 0.00 33.65 4.49
1278 1383 2.094390 TCCAGACGTGTACATAGGTTGC 60.094 50.000 0.00 0.00 0.00 4.17
1279 1384 2.094182 CCAGACGTGTACATAGGTTGCT 60.094 50.000 0.00 0.00 0.00 3.91
1280 1385 2.923655 CAGACGTGTACATAGGTTGCTG 59.076 50.000 0.00 0.00 0.00 4.41
1281 1386 2.823747 AGACGTGTACATAGGTTGCTGA 59.176 45.455 0.00 0.00 0.00 4.26
1296 1401 4.224433 GTTGCTGATTGATTGACACTGTG 58.776 43.478 6.19 6.19 0.00 3.66
1311 1416 1.836166 ACTGTGGTGAGATCCTCCATG 59.164 52.381 7.84 0.00 40.21 3.66
1352 1475 3.205338 CATTGGGTGAGATCGTGCATTA 58.795 45.455 0.00 0.00 0.00 1.90
1354 1477 1.134521 TGGGTGAGATCGTGCATTACC 60.135 52.381 0.00 0.00 0.00 2.85
1363 1486 0.373716 CGTGCATTACCGCTCCTTTC 59.626 55.000 0.00 0.00 0.00 2.62
1375 1498 3.127030 CCGCTCCTTTCGCTTAATCTTTT 59.873 43.478 0.00 0.00 0.00 2.27
1377 1500 4.554973 CGCTCCTTTCGCTTAATCTTTTTG 59.445 41.667 0.00 0.00 0.00 2.44
1378 1501 5.461526 GCTCCTTTCGCTTAATCTTTTTGT 58.538 37.500 0.00 0.00 0.00 2.83
1380 1503 5.685841 TCCTTTCGCTTAATCTTTTTGTCG 58.314 37.500 0.00 0.00 0.00 4.35
1381 1504 4.320953 CCTTTCGCTTAATCTTTTTGTCGC 59.679 41.667 0.00 0.00 0.00 5.19
1382 1505 3.465122 TCGCTTAATCTTTTTGTCGCC 57.535 42.857 0.00 0.00 0.00 5.54
1404 1527 3.200593 CGTGGCATGCAGAGCTCC 61.201 66.667 21.36 0.00 0.00 4.70
1521 1647 2.202851 AAGGAGCAGAGCATCGCG 60.203 61.111 0.00 0.00 42.67 5.87
1560 1686 3.764466 CTCACGGCCGAGGAGCTT 61.764 66.667 35.90 3.57 0.00 3.74
1584 1710 2.435586 CTCCGGCAGCACCTTGAG 60.436 66.667 0.00 0.00 35.61 3.02
1680 1806 2.221299 CGTCCCAACCTTCTCCCCA 61.221 63.158 0.00 0.00 0.00 4.96
1681 1807 1.379146 GTCCCAACCTTCTCCCCAC 59.621 63.158 0.00 0.00 0.00 4.61
1683 1809 2.160171 CCCAACCTTCTCCCCACCA 61.160 63.158 0.00 0.00 0.00 4.17
1745 1924 2.751166 ACAGCCATCGCCATAGATAC 57.249 50.000 0.00 0.00 34.57 2.24
1784 1963 3.417224 CGACGACGACAGGACCGA 61.417 66.667 0.00 0.00 42.66 4.69
1851 2030 2.816958 CAGCTACTGCAGGCGGTG 60.817 66.667 19.93 18.79 42.74 4.94
2049 2233 8.851416 CGACGATACTAGGAATTCATGTATTTC 58.149 37.037 7.93 10.61 0.00 2.17
2098 2282 4.095036 GGTGCCAGCTACTATGAAAAGTTC 59.905 45.833 0.00 0.00 0.00 3.01
2151 2343 9.552114 CTGAATTGATTGAACATACAGAAGAAC 57.448 33.333 0.00 0.00 0.00 3.01
2152 2344 9.065798 TGAATTGATTGAACATACAGAAGAACA 57.934 29.630 0.00 0.00 0.00 3.18
2170 2380 9.454859 AGAAGAACAGAAAAGAAACCCATATAG 57.545 33.333 0.00 0.00 0.00 1.31
2261 2489 3.094062 ATCGACGGGATGCACAGGG 62.094 63.158 0.00 0.00 32.92 4.45
2264 2492 1.450312 GACGGGATGCACAGGGAAG 60.450 63.158 0.00 0.00 0.00 3.46
2318 2552 9.811995 AACAATGATCATCATGAATAAAACAGG 57.188 29.630 9.06 0.00 37.15 4.00
2441 2697 3.607078 CGACGGAAGAGGCAAAAGAAAAG 60.607 47.826 0.00 0.00 0.00 2.27
2613 2877 8.319057 AGTAAGATCCATCAGGTTATTACACA 57.681 34.615 10.80 0.00 40.93 3.72
2819 3457 7.175641 AGCATCACACTTGAGCTAGTAAAATTT 59.824 33.333 0.00 0.00 35.63 1.82
2920 3592 2.169769 CCCAATGGGTACGTGTCTATGT 59.830 50.000 10.91 0.00 38.25 2.29
2921 3593 3.194861 CCAATGGGTACGTGTCTATGTG 58.805 50.000 0.00 0.00 0.00 3.21
2922 3594 3.118920 CCAATGGGTACGTGTCTATGTGA 60.119 47.826 0.00 0.00 0.00 3.58
2923 3595 4.112634 CAATGGGTACGTGTCTATGTGAG 58.887 47.826 0.00 0.00 0.00 3.51
2924 3596 1.475280 TGGGTACGTGTCTATGTGAGC 59.525 52.381 0.00 0.00 0.00 4.26
2925 3597 1.475280 GGGTACGTGTCTATGTGAGCA 59.525 52.381 0.00 0.00 0.00 4.26
2926 3598 2.479730 GGGTACGTGTCTATGTGAGCAG 60.480 54.545 0.00 0.00 0.00 4.24
2927 3599 2.422479 GGTACGTGTCTATGTGAGCAGA 59.578 50.000 0.00 0.00 0.00 4.26
2928 3600 3.119602 GGTACGTGTCTATGTGAGCAGAA 60.120 47.826 0.00 0.00 0.00 3.02
2929 3601 3.660501 ACGTGTCTATGTGAGCAGAAA 57.339 42.857 0.00 0.00 0.00 2.52
2930 3602 4.193826 ACGTGTCTATGTGAGCAGAAAT 57.806 40.909 0.00 0.00 0.00 2.17
2973 3645 7.209475 ACTGAATGGTTTTAGGTGTTTGAATG 58.791 34.615 0.00 0.00 0.00 2.67
2985 3657 5.043248 GGTGTTTGAATGAAGTGTTTCCAG 58.957 41.667 0.00 0.00 32.09 3.86
2994 3666 4.756084 GAAGTGTTTCCAGTTCATCCAG 57.244 45.455 5.60 0.00 46.13 3.86
2995 3667 3.864789 AGTGTTTCCAGTTCATCCAGT 57.135 42.857 0.00 0.00 0.00 4.00
2996 3668 4.170468 AGTGTTTCCAGTTCATCCAGTT 57.830 40.909 0.00 0.00 0.00 3.16
2997 3669 4.137543 AGTGTTTCCAGTTCATCCAGTTC 58.862 43.478 0.00 0.00 0.00 3.01
2998 3670 3.882888 GTGTTTCCAGTTCATCCAGTTCA 59.117 43.478 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.838486 CGGAGACAGACGCTCGGC 62.838 72.222 0.00 0.00 33.19 5.54
16 17 1.944676 CGCTTACGATGGCGGAGAC 60.945 63.158 11.29 0.00 46.42 3.36
17 18 2.411701 CGCTTACGATGGCGGAGA 59.588 61.111 11.29 0.00 46.42 3.71
27 28 1.585521 CTACCGCCAGTCGCTTACG 60.586 63.158 0.00 0.00 42.01 3.18
28 29 0.384669 ATCTACCGCCAGTCGCTTAC 59.615 55.000 0.00 0.00 36.73 2.34
29 30 0.666913 GATCTACCGCCAGTCGCTTA 59.333 55.000 0.00 0.00 36.73 3.09
30 31 1.437986 GATCTACCGCCAGTCGCTT 59.562 57.895 0.00 0.00 36.73 4.68
31 32 2.491022 GGATCTACCGCCAGTCGCT 61.491 63.158 0.00 0.00 36.73 4.93
32 33 2.027751 GGATCTACCGCCAGTCGC 59.972 66.667 0.00 0.00 36.73 5.19
33 34 1.065928 GTGGATCTACCGCCAGTCG 59.934 63.158 0.00 0.00 42.81 4.18
34 35 1.065928 CGTGGATCTACCGCCAGTC 59.934 63.158 3.33 0.00 45.52 3.51
35 36 3.077519 GCGTGGATCTACCGCCAGT 62.078 63.158 12.60 0.00 45.52 4.00
36 37 2.279517 GCGTGGATCTACCGCCAG 60.280 66.667 12.60 0.00 45.52 4.85
37 38 4.201679 CGCGTGGATCTACCGCCA 62.202 66.667 16.06 0.00 45.52 5.69
38 39 3.825833 CTCGCGTGGATCTACCGCC 62.826 68.421 5.77 1.28 45.52 6.13
39 40 1.779025 TACTCGCGTGGATCTACCGC 61.779 60.000 13.32 13.29 44.91 5.68
40 41 0.659427 TTACTCGCGTGGATCTACCG 59.341 55.000 13.32 8.45 42.61 4.02
41 42 1.268948 GGTTACTCGCGTGGATCTACC 60.269 57.143 13.32 5.07 39.54 3.18
42 43 1.268948 GGGTTACTCGCGTGGATCTAC 60.269 57.143 13.32 0.00 0.00 2.59
43 44 1.027357 GGGTTACTCGCGTGGATCTA 58.973 55.000 13.32 0.00 0.00 1.98
44 45 1.814527 GGGTTACTCGCGTGGATCT 59.185 57.895 13.32 0.00 0.00 2.75
45 46 1.588139 CGGGTTACTCGCGTGGATC 60.588 63.158 13.32 2.90 45.29 3.36
46 47 2.493030 CGGGTTACTCGCGTGGAT 59.507 61.111 13.32 0.00 45.29 3.41
67 68 4.803426 GAGCTCTGTCCACCGCCG 62.803 72.222 6.43 0.00 0.00 6.46
68 69 3.363844 GAGAGCTCTGTCCACCGCC 62.364 68.421 23.91 0.00 0.00 6.13
69 70 2.183046 GAGAGCTCTGTCCACCGC 59.817 66.667 23.91 0.00 0.00 5.68
70 71 2.888863 GGAGAGCTCTGTCCACCG 59.111 66.667 23.91 0.00 42.16 4.94
71 72 2.888863 CGGAGAGCTCTGTCCACC 59.111 66.667 23.91 14.70 42.66 4.61
72 73 2.183046 GCGGAGAGCTCTGTCCAC 59.817 66.667 23.91 7.68 42.66 4.02
73 74 3.071206 GGCGGAGAGCTCTGTCCA 61.071 66.667 23.91 0.00 42.66 4.02
89 90 4.148825 CAAGGGAGAGGGACGCGG 62.149 72.222 12.47 0.00 0.00 6.46
90 91 4.821589 GCAAGGGAGAGGGACGCG 62.822 72.222 3.53 3.53 0.00 6.01
91 92 3.672295 CTGCAAGGGAGAGGGACGC 62.672 68.421 0.00 0.00 0.00 5.19
92 93 2.581354 CTGCAAGGGAGAGGGACG 59.419 66.667 0.00 0.00 0.00 4.79
104 105 2.554636 CCTGTTGCTTCGCCTGCAA 61.555 57.895 5.66 5.66 46.48 4.08
105 106 2.979676 CCTGTTGCTTCGCCTGCA 60.980 61.111 0.00 0.00 38.80 4.41
106 107 2.669569 TCCTGTTGCTTCGCCTGC 60.670 61.111 0.00 0.00 0.00 4.85
107 108 0.957395 ATGTCCTGTTGCTTCGCCTG 60.957 55.000 0.00 0.00 0.00 4.85
108 109 0.674895 GATGTCCTGTTGCTTCGCCT 60.675 55.000 0.00 0.00 0.00 5.52
109 110 1.648467 GGATGTCCTGTTGCTTCGCC 61.648 60.000 0.00 0.00 0.00 5.54
110 111 0.674895 AGGATGTCCTGTTGCTTCGC 60.675 55.000 0.00 0.00 46.55 4.70
111 112 3.540211 AGGATGTCCTGTTGCTTCG 57.460 52.632 0.00 0.00 46.55 3.79
121 122 0.682292 GGAGGGAATCGAGGATGTCC 59.318 60.000 0.00 0.00 0.00 4.02
122 123 0.315568 CGGAGGGAATCGAGGATGTC 59.684 60.000 0.00 0.00 0.00 3.06
123 124 2.431023 CGGAGGGAATCGAGGATGT 58.569 57.895 0.00 0.00 0.00 3.06
138 139 4.020617 CAGCTGCCTCCAACCGGA 62.021 66.667 9.46 0.00 39.79 5.14
142 143 4.704833 TCCGCAGCTGCCTCCAAC 62.705 66.667 32.07 4.04 37.91 3.77
143 144 4.399395 CTCCGCAGCTGCCTCCAA 62.399 66.667 32.07 12.38 37.91 3.53
171 172 4.899239 CCATCTCCTGCCGGCGAC 62.899 72.222 23.90 0.00 0.00 5.19
173 174 4.598894 CTCCATCTCCTGCCGGCG 62.599 72.222 23.90 16.52 0.00 6.46
174 175 4.247380 CCTCCATCTCCTGCCGGC 62.247 72.222 22.73 22.73 0.00 6.13
175 176 4.247380 GCCTCCATCTCCTGCCGG 62.247 72.222 0.00 0.00 0.00 6.13
176 177 3.473647 TGCCTCCATCTCCTGCCG 61.474 66.667 0.00 0.00 0.00 5.69
177 178 2.191641 GTGCCTCCATCTCCTGCC 59.808 66.667 0.00 0.00 0.00 4.85
178 179 1.153208 CTGTGCCTCCATCTCCTGC 60.153 63.158 0.00 0.00 0.00 4.85
179 180 1.153208 GCTGTGCCTCCATCTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
180 181 1.614525 TGCTGTGCCTCCATCTCCT 60.615 57.895 0.00 0.00 0.00 3.69
181 182 1.153208 CTGCTGTGCCTCCATCTCC 60.153 63.158 0.00 0.00 0.00 3.71
182 183 1.153208 CCTGCTGTGCCTCCATCTC 60.153 63.158 0.00 0.00 0.00 2.75
183 184 2.996395 CCTGCTGTGCCTCCATCT 59.004 61.111 0.00 0.00 0.00 2.90
184 185 2.827642 GCCTGCTGTGCCTCCATC 60.828 66.667 0.00 0.00 0.00 3.51
185 186 4.437587 GGCCTGCTGTGCCTCCAT 62.438 66.667 13.43 0.00 45.70 3.41
200 201 4.821589 CTCCACCTCCTTCGCGGC 62.822 72.222 6.13 0.00 0.00 6.53
201 202 2.427245 ATCTCCACCTCCTTCGCGG 61.427 63.158 6.13 0.00 0.00 6.46
202 203 1.227089 CATCTCCACCTCCTTCGCG 60.227 63.158 0.00 0.00 0.00 5.87
203 204 1.522580 GCATCTCCACCTCCTTCGC 60.523 63.158 0.00 0.00 0.00 4.70
204 205 0.103937 GAGCATCTCCACCTCCTTCG 59.896 60.000 0.00 0.00 0.00 3.79
205 206 0.103937 CGAGCATCTCCACCTCCTTC 59.896 60.000 0.00 0.00 0.00 3.46
206 207 1.965754 GCGAGCATCTCCACCTCCTT 61.966 60.000 0.00 0.00 0.00 3.36
207 208 2.430610 GCGAGCATCTCCACCTCCT 61.431 63.158 0.00 0.00 0.00 3.69
208 209 2.107953 GCGAGCATCTCCACCTCC 59.892 66.667 0.00 0.00 0.00 4.30
209 210 1.109920 TAGGCGAGCATCTCCACCTC 61.110 60.000 6.40 0.00 44.17 3.85
210 211 1.075970 TAGGCGAGCATCTCCACCT 60.076 57.895 0.00 7.81 44.17 4.00
211 212 1.068250 GTAGGCGAGCATCTCCACC 59.932 63.158 0.00 0.00 44.17 4.61
212 213 0.390860 ATGTAGGCGAGCATCTCCAC 59.609 55.000 0.00 0.00 44.17 4.02
213 214 0.390492 CATGTAGGCGAGCATCTCCA 59.610 55.000 0.00 0.00 44.17 3.86
214 215 0.320247 CCATGTAGGCGAGCATCTCC 60.320 60.000 0.00 0.00 41.32 3.71
215 216 0.676184 TCCATGTAGGCGAGCATCTC 59.324 55.000 0.00 0.00 37.29 2.75
216 217 1.001746 CATCCATGTAGGCGAGCATCT 59.998 52.381 0.00 0.00 37.29 2.90
217 218 1.001293 TCATCCATGTAGGCGAGCATC 59.999 52.381 0.00 0.00 37.29 3.91
218 219 1.001746 CTCATCCATGTAGGCGAGCAT 59.998 52.381 0.00 0.00 37.29 3.79
219 220 0.390492 CTCATCCATGTAGGCGAGCA 59.610 55.000 0.00 0.00 37.29 4.26
220 221 0.320247 CCTCATCCATGTAGGCGAGC 60.320 60.000 0.00 0.00 36.09 5.03
221 222 1.000283 GACCTCATCCATGTAGGCGAG 60.000 57.143 0.00 0.00 36.76 5.03
222 223 1.040646 GACCTCATCCATGTAGGCGA 58.959 55.000 0.00 0.00 37.29 5.54
223 224 0.319040 CGACCTCATCCATGTAGGCG 60.319 60.000 0.00 0.00 37.29 5.52
224 225 1.000283 CTCGACCTCATCCATGTAGGC 60.000 57.143 0.00 0.00 37.29 3.93
225 226 1.000283 GCTCGACCTCATCCATGTAGG 60.000 57.143 0.00 0.00 39.47 3.18
226 227 1.683385 TGCTCGACCTCATCCATGTAG 59.317 52.381 0.00 0.00 0.00 2.74
227 228 1.683385 CTGCTCGACCTCATCCATGTA 59.317 52.381 0.00 0.00 0.00 2.29
228 229 0.463204 CTGCTCGACCTCATCCATGT 59.537 55.000 0.00 0.00 0.00 3.21
229 230 0.249784 CCTGCTCGACCTCATCCATG 60.250 60.000 0.00 0.00 0.00 3.66
230 231 0.397675 TCCTGCTCGACCTCATCCAT 60.398 55.000 0.00 0.00 0.00 3.41
231 232 1.000359 TCCTGCTCGACCTCATCCA 60.000 57.895 0.00 0.00 0.00 3.41
232 233 1.739049 CTCCTGCTCGACCTCATCC 59.261 63.158 0.00 0.00 0.00 3.51
233 234 0.753479 TCCTCCTGCTCGACCTCATC 60.753 60.000 0.00 0.00 0.00 2.92
234 235 0.754957 CTCCTCCTGCTCGACCTCAT 60.755 60.000 0.00 0.00 0.00 2.90
235 236 1.379176 CTCCTCCTGCTCGACCTCA 60.379 63.158 0.00 0.00 0.00 3.86
236 237 2.124693 CCTCCTCCTGCTCGACCTC 61.125 68.421 0.00 0.00 0.00 3.85
237 238 2.043450 CCTCCTCCTGCTCGACCT 60.043 66.667 0.00 0.00 0.00 3.85
238 239 3.151022 CCCTCCTCCTGCTCGACC 61.151 72.222 0.00 0.00 0.00 4.79
239 240 2.363147 ACCCTCCTCCTGCTCGAC 60.363 66.667 0.00 0.00 0.00 4.20
240 241 2.363018 CACCCTCCTCCTGCTCGA 60.363 66.667 0.00 0.00 0.00 4.04
241 242 3.465403 CCACCCTCCTCCTGCTCG 61.465 72.222 0.00 0.00 0.00 5.03
242 243 3.086600 CCCACCCTCCTCCTGCTC 61.087 72.222 0.00 0.00 0.00 4.26
243 244 3.615811 TCCCACCCTCCTCCTGCT 61.616 66.667 0.00 0.00 0.00 4.24
244 245 3.403558 GTCCCACCCTCCTCCTGC 61.404 72.222 0.00 0.00 0.00 4.85
245 246 3.077556 CGTCCCACCCTCCTCCTG 61.078 72.222 0.00 0.00 0.00 3.86
246 247 4.400251 CCGTCCCACCCTCCTCCT 62.400 72.222 0.00 0.00 0.00 3.69
266 267 3.217743 GACGAGCGGGTAGGAGGG 61.218 72.222 0.00 0.00 0.00 4.30
267 268 3.217743 GGACGAGCGGGTAGGAGG 61.218 72.222 0.00 0.00 0.00 4.30
268 269 2.439701 TGGACGAGCGGGTAGGAG 60.440 66.667 0.00 0.00 0.00 3.69
269 270 2.439701 CTGGACGAGCGGGTAGGA 60.440 66.667 0.00 0.00 0.00 2.94
270 271 4.208686 GCTGGACGAGCGGGTAGG 62.209 72.222 0.00 0.00 38.15 3.18
293 294 3.487202 CACGACGACAATGCCGGG 61.487 66.667 2.18 0.00 0.00 5.73
294 295 3.487202 CCACGACGACAATGCCGG 61.487 66.667 0.00 0.00 0.00 6.13
295 296 2.431771 TCCACGACGACAATGCCG 60.432 61.111 0.00 0.00 0.00 5.69
296 297 1.019278 ATGTCCACGACGACAATGCC 61.019 55.000 0.00 0.00 45.49 4.40
297 298 0.370273 GATGTCCACGACGACAATGC 59.630 55.000 0.00 3.67 45.49 3.56
298 299 1.920574 GAGATGTCCACGACGACAATG 59.079 52.381 0.00 0.00 45.49 2.82
299 300 1.135083 GGAGATGTCCACGACGACAAT 60.135 52.381 3.49 5.71 45.49 2.71
300 301 0.242825 GGAGATGTCCACGACGACAA 59.757 55.000 3.49 0.00 45.49 3.18
301 302 1.880894 GGAGATGTCCACGACGACA 59.119 57.895 3.49 10.83 46.36 4.35
302 303 1.226323 CGGAGATGTCCACGACGAC 60.226 63.158 9.94 0.00 44.18 4.34
303 304 1.376295 TCGGAGATGTCCACGACGA 60.376 57.895 9.94 0.00 44.18 4.20
304 305 1.226323 GTCGGAGATGTCCACGACG 60.226 63.158 9.94 0.00 44.76 5.12
305 306 1.642037 TCGTCGGAGATGTCCACGAC 61.642 60.000 23.14 17.28 44.42 4.34
306 307 1.376295 TCGTCGGAGATGTCCACGA 60.376 57.895 23.14 23.14 45.75 4.35
307 308 1.226323 GTCGTCGGAGATGTCCACG 60.226 63.158 20.37 20.37 44.18 4.94
308 309 1.226323 CGTCGTCGGAGATGTCCAC 60.226 63.158 9.94 5.66 44.18 4.02
309 310 0.956902 TTCGTCGTCGGAGATGTCCA 60.957 55.000 9.94 0.00 44.18 4.02
310 311 0.248134 CTTCGTCGTCGGAGATGTCC 60.248 60.000 4.17 0.00 44.73 4.02
311 312 0.725686 TCTTCGTCGTCGGAGATGTC 59.274 55.000 9.06 0.00 45.42 3.06
312 313 2.850439 TCTTCGTCGTCGGAGATGT 58.150 52.632 9.06 0.00 45.42 3.06
316 317 1.731160 AGTTACTCTTCGTCGTCGGAG 59.269 52.381 3.79 3.79 43.44 4.63
317 318 1.800805 AGTTACTCTTCGTCGTCGGA 58.199 50.000 1.55 0.00 37.69 4.55
318 319 2.030213 CCTAGTTACTCTTCGTCGTCGG 59.970 54.545 1.55 0.00 37.69 4.79
319 320 2.030213 CCCTAGTTACTCTTCGTCGTCG 59.970 54.545 0.00 0.00 38.55 5.12
320 321 3.006247 ACCCTAGTTACTCTTCGTCGTC 58.994 50.000 0.00 0.00 0.00 4.20
321 322 3.064900 ACCCTAGTTACTCTTCGTCGT 57.935 47.619 0.00 0.00 0.00 4.34
322 323 4.187694 ACTACCCTAGTTACTCTTCGTCG 58.812 47.826 0.00 0.00 34.86 5.12
323 324 5.233263 CGTACTACCCTAGTTACTCTTCGTC 59.767 48.000 0.00 0.00 40.14 4.20
324 325 5.112686 CGTACTACCCTAGTTACTCTTCGT 58.887 45.833 0.00 0.00 40.14 3.85
325 326 5.112686 ACGTACTACCCTAGTTACTCTTCG 58.887 45.833 0.00 0.00 40.14 3.79
326 327 6.704050 CCTACGTACTACCCTAGTTACTCTTC 59.296 46.154 0.00 0.00 40.14 2.87
327 328 6.384305 TCCTACGTACTACCCTAGTTACTCTT 59.616 42.308 0.00 0.00 40.14 2.85
328 329 5.900123 TCCTACGTACTACCCTAGTTACTCT 59.100 44.000 0.00 0.00 40.14 3.24
329 330 6.163135 TCCTACGTACTACCCTAGTTACTC 57.837 45.833 0.00 0.00 40.14 2.59
330 331 6.755542 ATCCTACGTACTACCCTAGTTACT 57.244 41.667 0.00 0.00 40.14 2.24
331 332 7.809546 AAATCCTACGTACTACCCTAGTTAC 57.190 40.000 0.00 0.00 40.14 2.50
332 333 8.823220 AAAAATCCTACGTACTACCCTAGTTA 57.177 34.615 0.00 0.00 40.14 2.24
333 334 7.724490 AAAAATCCTACGTACTACCCTAGTT 57.276 36.000 0.00 0.00 40.14 2.24
356 357 7.333921 CCTACATCCATAAAAAGCATGCAAAAA 59.666 33.333 21.98 1.00 0.00 1.94
357 358 6.817641 CCTACATCCATAAAAAGCATGCAAAA 59.182 34.615 21.98 0.20 0.00 2.44
358 359 6.339730 CCTACATCCATAAAAAGCATGCAAA 58.660 36.000 21.98 0.00 0.00 3.68
359 360 5.163426 CCCTACATCCATAAAAAGCATGCAA 60.163 40.000 21.98 0.00 0.00 4.08
360 361 4.341806 CCCTACATCCATAAAAAGCATGCA 59.658 41.667 21.98 0.00 0.00 3.96
361 362 4.262164 CCCCTACATCCATAAAAAGCATGC 60.262 45.833 10.51 10.51 0.00 4.06
362 363 5.139727 TCCCCTACATCCATAAAAAGCATG 58.860 41.667 0.00 0.00 0.00 4.06
363 364 5.402054 TCCCCTACATCCATAAAAAGCAT 57.598 39.130 0.00 0.00 0.00 3.79
364 365 4.871871 TCCCCTACATCCATAAAAAGCA 57.128 40.909 0.00 0.00 0.00 3.91
365 366 5.385198 TCATCCCCTACATCCATAAAAAGC 58.615 41.667 0.00 0.00 0.00 3.51
366 367 7.896383 TTTCATCCCCTACATCCATAAAAAG 57.104 36.000 0.00 0.00 0.00 2.27
368 369 9.532494 CATATTTCATCCCCTACATCCATAAAA 57.468 33.333 0.00 0.00 0.00 1.52
369 370 8.899765 TCATATTTCATCCCCTACATCCATAAA 58.100 33.333 0.00 0.00 0.00 1.40
370 371 8.461685 TCATATTTCATCCCCTACATCCATAA 57.538 34.615 0.00 0.00 0.00 1.90
371 372 7.906192 TCTCATATTTCATCCCCTACATCCATA 59.094 37.037 0.00 0.00 0.00 2.74
372 373 6.737131 TCTCATATTTCATCCCCTACATCCAT 59.263 38.462 0.00 0.00 0.00 3.41
373 374 6.090870 TCTCATATTTCATCCCCTACATCCA 58.909 40.000 0.00 0.00 0.00 3.41
374 375 6.441924 TCTCTCATATTTCATCCCCTACATCC 59.558 42.308 0.00 0.00 0.00 3.51
375 376 7.487822 TCTCTCATATTTCATCCCCTACATC 57.512 40.000 0.00 0.00 0.00 3.06
376 377 7.528543 GCTTCTCTCATATTTCATCCCCTACAT 60.529 40.741 0.00 0.00 0.00 2.29
377 378 6.239714 GCTTCTCTCATATTTCATCCCCTACA 60.240 42.308 0.00 0.00 0.00 2.74
378 379 6.169800 GCTTCTCTCATATTTCATCCCCTAC 58.830 44.000 0.00 0.00 0.00 3.18
379 380 5.047021 CGCTTCTCTCATATTTCATCCCCTA 60.047 44.000 0.00 0.00 0.00 3.53
380 381 4.262808 CGCTTCTCTCATATTTCATCCCCT 60.263 45.833 0.00 0.00 0.00 4.79
381 382 3.999663 CGCTTCTCTCATATTTCATCCCC 59.000 47.826 0.00 0.00 0.00 4.81
382 383 3.999663 CCGCTTCTCTCATATTTCATCCC 59.000 47.826 0.00 0.00 0.00 3.85
383 384 4.887748 TCCGCTTCTCTCATATTTCATCC 58.112 43.478 0.00 0.00 0.00 3.51
384 385 5.163874 GCATCCGCTTCTCTCATATTTCATC 60.164 44.000 0.00 0.00 34.30 2.92
385 386 4.694509 GCATCCGCTTCTCTCATATTTCAT 59.305 41.667 0.00 0.00 34.30 2.57
386 387 4.060900 GCATCCGCTTCTCTCATATTTCA 58.939 43.478 0.00 0.00 34.30 2.69
387 388 4.060900 TGCATCCGCTTCTCTCATATTTC 58.939 43.478 0.00 0.00 39.64 2.17
388 389 4.077300 TGCATCCGCTTCTCTCATATTT 57.923 40.909 0.00 0.00 39.64 1.40
389 390 3.758755 TGCATCCGCTTCTCTCATATT 57.241 42.857 0.00 0.00 39.64 1.28
390 391 3.758755 TTGCATCCGCTTCTCTCATAT 57.241 42.857 0.00 0.00 39.64 1.78
391 392 3.118629 ACTTTGCATCCGCTTCTCTCATA 60.119 43.478 0.00 0.00 39.64 2.15
392 393 2.286872 CTTTGCATCCGCTTCTCTCAT 58.713 47.619 0.00 0.00 39.64 2.90
393 394 1.002430 ACTTTGCATCCGCTTCTCTCA 59.998 47.619 0.00 0.00 39.64 3.27
394 395 1.396301 CACTTTGCATCCGCTTCTCTC 59.604 52.381 0.00 0.00 39.64 3.20
395 396 1.446907 CACTTTGCATCCGCTTCTCT 58.553 50.000 0.00 0.00 39.64 3.10
396 397 0.449388 CCACTTTGCATCCGCTTCTC 59.551 55.000 0.00 0.00 39.64 2.87
397 398 1.589716 GCCACTTTGCATCCGCTTCT 61.590 55.000 0.00 0.00 39.64 2.85
398 399 1.153958 GCCACTTTGCATCCGCTTC 60.154 57.895 0.00 0.00 39.64 3.86
399 400 0.322456 TAGCCACTTTGCATCCGCTT 60.322 50.000 0.00 0.00 39.64 4.68
400 401 0.322456 TTAGCCACTTTGCATCCGCT 60.322 50.000 0.00 0.00 39.64 5.52
401 402 0.740737 ATTAGCCACTTTGCATCCGC 59.259 50.000 0.00 0.00 39.24 5.54
402 403 3.119531 TCAAATTAGCCACTTTGCATCCG 60.120 43.478 0.00 0.00 33.40 4.18
403 404 4.427312 CTCAAATTAGCCACTTTGCATCC 58.573 43.478 0.00 0.00 33.40 3.51
404 405 4.427312 CCTCAAATTAGCCACTTTGCATC 58.573 43.478 0.00 0.00 33.40 3.91
405 406 3.368739 GCCTCAAATTAGCCACTTTGCAT 60.369 43.478 0.00 0.00 33.40 3.96
406 407 2.029110 GCCTCAAATTAGCCACTTTGCA 60.029 45.455 0.00 0.00 33.40 4.08
407 408 2.610433 GCCTCAAATTAGCCACTTTGC 58.390 47.619 0.00 0.00 33.40 3.68
408 409 2.228822 ACGCCTCAAATTAGCCACTTTG 59.771 45.455 0.00 0.00 34.41 2.77
409 410 2.514803 ACGCCTCAAATTAGCCACTTT 58.485 42.857 0.00 0.00 0.00 2.66
410 411 2.200373 ACGCCTCAAATTAGCCACTT 57.800 45.000 0.00 0.00 0.00 3.16
411 412 2.200373 AACGCCTCAAATTAGCCACT 57.800 45.000 0.00 0.00 0.00 4.00
412 413 3.007635 AGTAACGCCTCAAATTAGCCAC 58.992 45.455 0.00 0.00 0.00 5.01
413 414 3.006940 CAGTAACGCCTCAAATTAGCCA 58.993 45.455 0.00 0.00 0.00 4.75
414 415 2.354821 CCAGTAACGCCTCAAATTAGCC 59.645 50.000 0.00 0.00 0.00 3.93
415 416 3.007635 ACCAGTAACGCCTCAAATTAGC 58.992 45.455 0.00 0.00 0.00 3.09
416 417 4.504858 AGACCAGTAACGCCTCAAATTAG 58.495 43.478 0.00 0.00 0.00 1.73
417 418 4.222145 AGAGACCAGTAACGCCTCAAATTA 59.778 41.667 0.00 0.00 0.00 1.40
418 419 3.008049 AGAGACCAGTAACGCCTCAAATT 59.992 43.478 0.00 0.00 0.00 1.82
419 420 2.567615 AGAGACCAGTAACGCCTCAAAT 59.432 45.455 0.00 0.00 0.00 2.32
420 421 1.968493 AGAGACCAGTAACGCCTCAAA 59.032 47.619 0.00 0.00 0.00 2.69
421 422 1.272490 CAGAGACCAGTAACGCCTCAA 59.728 52.381 0.00 0.00 0.00 3.02
422 423 0.888619 CAGAGACCAGTAACGCCTCA 59.111 55.000 0.00 0.00 0.00 3.86
423 424 0.889306 ACAGAGACCAGTAACGCCTC 59.111 55.000 0.00 0.00 0.00 4.70
424 425 0.889306 GACAGAGACCAGTAACGCCT 59.111 55.000 0.00 0.00 0.00 5.52
425 426 0.108756 GGACAGAGACCAGTAACGCC 60.109 60.000 0.00 0.00 0.00 5.68
426 427 0.456312 CGGACAGAGACCAGTAACGC 60.456 60.000 0.00 0.00 0.00 4.84
427 428 0.456312 GCGGACAGAGACCAGTAACG 60.456 60.000 0.00 0.00 0.00 3.18
428 429 0.456312 CGCGGACAGAGACCAGTAAC 60.456 60.000 0.00 0.00 0.00 2.50
429 430 1.592400 CCGCGGACAGAGACCAGTAA 61.592 60.000 24.07 0.00 0.00 2.24
430 431 2.044555 CCGCGGACAGAGACCAGTA 61.045 63.158 24.07 0.00 0.00 2.74
431 432 3.374402 CCGCGGACAGAGACCAGT 61.374 66.667 24.07 0.00 0.00 4.00
432 433 2.418910 ATCCGCGGACAGAGACCAG 61.419 63.158 33.75 0.00 0.00 4.00
433 434 2.362503 ATCCGCGGACAGAGACCA 60.363 61.111 33.75 4.52 0.00 4.02
434 435 2.105128 CATCCGCGGACAGAGACC 59.895 66.667 33.75 0.00 0.00 3.85
435 436 1.226717 GACATCCGCGGACAGAGAC 60.227 63.158 33.75 16.78 0.00 3.36
436 437 1.378646 AGACATCCGCGGACAGAGA 60.379 57.895 33.75 7.35 0.00 3.10
437 438 1.226802 CAGACATCCGCGGACAGAG 60.227 63.158 33.75 22.36 0.00 3.35
438 439 1.657751 CTCAGACATCCGCGGACAGA 61.658 60.000 33.75 21.31 0.00 3.41
439 440 1.226802 CTCAGACATCCGCGGACAG 60.227 63.158 33.75 27.69 0.00 3.51
440 441 2.710902 CCTCAGACATCCGCGGACA 61.711 63.158 33.75 10.24 0.00 4.02
441 442 2.105128 CCTCAGACATCCGCGGAC 59.895 66.667 33.75 18.89 0.00 4.79
442 443 3.147595 CCCTCAGACATCCGCGGA 61.148 66.667 33.12 33.12 0.00 5.54
443 444 4.227134 CCCCTCAGACATCCGCGG 62.227 72.222 22.12 22.12 0.00 6.46
444 445 4.899239 GCCCCTCAGACATCCGCG 62.899 72.222 0.00 0.00 0.00 6.46
445 446 4.554036 GGCCCCTCAGACATCCGC 62.554 72.222 0.00 0.00 0.00 5.54
446 447 1.048724 TTAGGCCCCTCAGACATCCG 61.049 60.000 0.00 0.00 0.00 4.18
447 448 1.439543 ATTAGGCCCCTCAGACATCC 58.560 55.000 0.00 0.00 0.00 3.51
448 449 3.217626 CAAATTAGGCCCCTCAGACATC 58.782 50.000 0.00 0.00 0.00 3.06
449 450 2.687914 GCAAATTAGGCCCCTCAGACAT 60.688 50.000 0.00 0.00 0.00 3.06
450 451 1.340991 GCAAATTAGGCCCCTCAGACA 60.341 52.381 0.00 0.00 0.00 3.41
451 452 1.340991 TGCAAATTAGGCCCCTCAGAC 60.341 52.381 0.00 0.00 0.00 3.51
452 453 0.998928 TGCAAATTAGGCCCCTCAGA 59.001 50.000 0.00 0.00 0.00 3.27
453 454 1.851304 TTGCAAATTAGGCCCCTCAG 58.149 50.000 0.00 0.00 0.00 3.35
454 455 2.178580 CTTTGCAAATTAGGCCCCTCA 58.821 47.619 13.23 0.00 0.00 3.86
455 456 2.166459 GACTTTGCAAATTAGGCCCCTC 59.834 50.000 13.23 0.00 0.00 4.30
456 457 2.179427 GACTTTGCAAATTAGGCCCCT 58.821 47.619 13.23 0.00 0.00 4.79
457 458 1.207089 GGACTTTGCAAATTAGGCCCC 59.793 52.381 13.23 0.39 30.36 5.80
458 459 1.135112 CGGACTTTGCAAATTAGGCCC 60.135 52.381 13.23 1.78 33.22 5.80
459 460 1.135112 CCGGACTTTGCAAATTAGGCC 60.135 52.381 13.23 12.00 33.50 5.19
460 461 1.735700 GCCGGACTTTGCAAATTAGGC 60.736 52.381 23.11 23.11 35.00 3.93
461 462 1.818674 AGCCGGACTTTGCAAATTAGG 59.181 47.619 13.23 14.37 0.00 2.69
462 463 2.228822 ACAGCCGGACTTTGCAAATTAG 59.771 45.455 13.23 3.45 0.00 1.73
463 464 2.235016 ACAGCCGGACTTTGCAAATTA 58.765 42.857 13.23 0.00 0.00 1.40
464 465 1.039856 ACAGCCGGACTTTGCAAATT 58.960 45.000 13.23 7.10 0.00 1.82
465 466 1.812571 CTACAGCCGGACTTTGCAAAT 59.187 47.619 13.23 3.03 0.00 2.32
466 467 1.202710 TCTACAGCCGGACTTTGCAAA 60.203 47.619 12.14 12.14 0.00 3.68
467 468 0.394938 TCTACAGCCGGACTTTGCAA 59.605 50.000 5.05 0.00 0.00 4.08
468 469 0.613260 ATCTACAGCCGGACTTTGCA 59.387 50.000 5.05 0.00 0.00 4.08
469 470 1.009829 CATCTACAGCCGGACTTTGC 58.990 55.000 5.05 0.00 0.00 3.68
470 471 1.009829 GCATCTACAGCCGGACTTTG 58.990 55.000 5.05 0.00 0.00 2.77
471 472 0.905357 AGCATCTACAGCCGGACTTT 59.095 50.000 5.05 0.00 0.00 2.66
472 473 0.461961 GAGCATCTACAGCCGGACTT 59.538 55.000 5.05 0.00 0.00 3.01
473 474 2.119886 GAGCATCTACAGCCGGACT 58.880 57.895 5.05 0.00 0.00 3.85
474 475 4.740235 GAGCATCTACAGCCGGAC 57.260 61.111 5.05 0.00 0.00 4.79
485 486 2.579207 TGTGTACCGCTAAGAGCATC 57.421 50.000 0.00 0.00 42.58 3.91
486 487 3.328382 TTTGTGTACCGCTAAGAGCAT 57.672 42.857 0.00 0.00 42.58 3.79
487 488 2.823924 TTTGTGTACCGCTAAGAGCA 57.176 45.000 0.00 0.00 42.58 4.26
488 489 3.181510 CCATTTTGTGTACCGCTAAGAGC 60.182 47.826 0.00 0.00 38.02 4.09
489 490 4.250464 TCCATTTTGTGTACCGCTAAGAG 58.750 43.478 0.00 0.00 0.00 2.85
490 491 4.274602 TCCATTTTGTGTACCGCTAAGA 57.725 40.909 0.00 0.00 0.00 2.10
491 492 5.365403 TTTCCATTTTGTGTACCGCTAAG 57.635 39.130 0.00 0.00 0.00 2.18
492 493 5.769484 TTTTCCATTTTGTGTACCGCTAA 57.231 34.783 0.00 0.00 0.00 3.09
493 494 5.769484 TTTTTCCATTTTGTGTACCGCTA 57.231 34.783 0.00 0.00 0.00 4.26
494 495 4.657436 TTTTTCCATTTTGTGTACCGCT 57.343 36.364 0.00 0.00 0.00 5.52
512 513 1.248101 CGTCCGGCCCCTTCATTTTT 61.248 55.000 0.00 0.00 0.00 1.94
513 514 1.677633 CGTCCGGCCCCTTCATTTT 60.678 57.895 0.00 0.00 0.00 1.82
527 528 1.147600 ACAAAGTGTCACCCCGTCC 59.852 57.895 0.00 0.00 0.00 4.79
534 535 1.172812 GCCCTCCCACAAAGTGTCAC 61.173 60.000 0.00 0.00 0.00 3.67
564 565 2.777692 TCCTTTGTGTCTCCTTCCTTGT 59.222 45.455 0.00 0.00 0.00 3.16
565 566 3.071602 TCTCCTTTGTGTCTCCTTCCTTG 59.928 47.826 0.00 0.00 0.00 3.61
585 586 2.965831 GTCTTCCCTTTTGCCCTTTTCT 59.034 45.455 0.00 0.00 0.00 2.52
615 616 4.368543 GGACCGTCCTCGCCGTTT 62.369 66.667 10.59 0.00 32.53 3.60
638 639 1.650528 CTGGGGATCCTAGCTTAGGG 58.349 60.000 12.58 0.00 46.24 3.53
642 643 1.004758 TGGCTGGGGATCCTAGCTT 59.995 57.895 28.44 0.00 37.36 3.74
643 644 1.461075 CTGGCTGGGGATCCTAGCT 60.461 63.158 28.44 0.00 37.36 3.32
644 645 3.155750 CTGGCTGGGGATCCTAGC 58.844 66.667 24.54 24.54 36.85 3.42
645 646 2.524204 GGCTGGCTGGGGATCCTAG 61.524 68.421 12.58 11.60 0.00 3.02
646 647 2.448542 GGCTGGCTGGGGATCCTA 60.449 66.667 12.58 0.03 0.00 2.94
656 666 2.362120 GATGCTGGTTGGCTGGCT 60.362 61.111 2.00 0.00 0.00 4.75
681 691 4.651503 TGCATGGTGAAAGTTAAAAAGGGA 59.348 37.500 0.00 0.00 0.00 4.20
682 692 4.954875 TGCATGGTGAAAGTTAAAAAGGG 58.045 39.130 0.00 0.00 0.00 3.95
683 693 6.917217 TTTGCATGGTGAAAGTTAAAAAGG 57.083 33.333 0.00 0.00 0.00 3.11
717 775 8.579006 GGATGAGAACATGCATATTCCAAATTA 58.421 33.333 14.02 0.00 42.90 1.40
718 776 7.439381 GGATGAGAACATGCATATTCCAAATT 58.561 34.615 14.02 0.00 42.90 1.82
719 777 6.294342 CGGATGAGAACATGCATATTCCAAAT 60.294 38.462 14.02 5.69 43.42 2.32
720 778 5.008911 CGGATGAGAACATGCATATTCCAAA 59.991 40.000 14.02 0.85 43.42 3.28
722 780 4.067192 CGGATGAGAACATGCATATTCCA 58.933 43.478 14.02 11.79 43.42 3.53
723 781 4.318332 TCGGATGAGAACATGCATATTCC 58.682 43.478 14.02 6.66 43.42 3.01
724 782 5.929697 TTCGGATGAGAACATGCATATTC 57.070 39.130 9.77 9.77 43.42 1.75
744 802 3.561725 GCTGCCTATTATCACCTGTGTTC 59.438 47.826 0.00 0.00 0.00 3.18
766 824 1.965935 TATGGAATGTGCCATCACGG 58.034 50.000 0.00 0.00 45.36 4.94
797 855 1.674322 CGGCCGTGTTTCCATTCCT 60.674 57.895 19.50 0.00 0.00 3.36
816 874 0.178068 TTGCTCCCTTCCATACTCGC 59.822 55.000 0.00 0.00 0.00 5.03
819 877 2.378547 TGGTTTTGCTCCCTTCCATACT 59.621 45.455 0.00 0.00 0.00 2.12
884 943 6.183361 TGTGTATGAGAGAGAGAAGGGGATAT 60.183 42.308 0.00 0.00 0.00 1.63
890 949 4.439426 CGGTTGTGTATGAGAGAGAGAAGG 60.439 50.000 0.00 0.00 0.00 3.46
891 950 4.396478 TCGGTTGTGTATGAGAGAGAGAAG 59.604 45.833 0.00 0.00 0.00 2.85
892 951 4.156190 GTCGGTTGTGTATGAGAGAGAGAA 59.844 45.833 0.00 0.00 0.00 2.87
899 958 2.803956 AGAGGTCGGTTGTGTATGAGA 58.196 47.619 0.00 0.00 0.00 3.27
903 962 1.747355 CCGTAGAGGTCGGTTGTGTAT 59.253 52.381 0.00 0.00 42.62 2.29
904 963 1.167851 CCGTAGAGGTCGGTTGTGTA 58.832 55.000 0.00 0.00 42.62 2.90
905 964 1.962144 CCGTAGAGGTCGGTTGTGT 59.038 57.895 0.00 0.00 42.62 3.72
906 965 4.883026 CCGTAGAGGTCGGTTGTG 57.117 61.111 0.00 0.00 42.62 3.33
912 971 0.100861 GAAGGAAGCCGTAGAGGTCG 59.899 60.000 0.00 0.00 43.70 4.79
913 972 1.476477 AGAAGGAAGCCGTAGAGGTC 58.524 55.000 0.00 0.00 43.70 3.85
914 973 1.939980 AAGAAGGAAGCCGTAGAGGT 58.060 50.000 0.00 0.00 43.70 3.85
915 974 3.003480 CAAAAGAAGGAAGCCGTAGAGG 58.997 50.000 0.00 0.00 44.97 3.69
916 975 2.416893 GCAAAAGAAGGAAGCCGTAGAG 59.583 50.000 0.00 0.00 0.00 2.43
943 1045 2.310945 TCTCGTCTCCTCCCTTCCTTTA 59.689 50.000 0.00 0.00 0.00 1.85
974 1076 4.313282 TCAATCACTTGTCTCTGCTCTTG 58.687 43.478 0.00 0.00 33.87 3.02
976 1078 4.222366 TGATCAATCACTTGTCTCTGCTCT 59.778 41.667 0.00 0.00 33.87 4.09
977 1079 4.502016 TGATCAATCACTTGTCTCTGCTC 58.498 43.478 0.00 0.00 33.87 4.26
978 1080 4.548451 TGATCAATCACTTGTCTCTGCT 57.452 40.909 0.00 0.00 33.87 4.24
979 1081 5.448768 CCATTGATCAATCACTTGTCTCTGC 60.449 44.000 18.16 0.00 36.36 4.26
980 1082 5.448768 GCCATTGATCAATCACTTGTCTCTG 60.449 44.000 18.16 4.30 36.36 3.35
981 1083 4.639310 GCCATTGATCAATCACTTGTCTCT 59.361 41.667 18.16 0.00 36.36 3.10
982 1084 4.495349 CGCCATTGATCAATCACTTGTCTC 60.495 45.833 18.16 0.32 36.36 3.36
983 1085 3.376234 CGCCATTGATCAATCACTTGTCT 59.624 43.478 18.16 0.00 36.36 3.41
984 1086 3.374988 TCGCCATTGATCAATCACTTGTC 59.625 43.478 18.16 0.00 36.36 3.18
985 1087 3.346315 TCGCCATTGATCAATCACTTGT 58.654 40.909 18.16 0.00 36.36 3.16
986 1088 4.287720 CATCGCCATTGATCAATCACTTG 58.712 43.478 18.16 8.38 36.36 3.16
987 1089 3.317149 CCATCGCCATTGATCAATCACTT 59.683 43.478 18.16 0.00 36.36 3.16
988 1090 2.882761 CCATCGCCATTGATCAATCACT 59.117 45.455 18.16 0.00 36.36 3.41
989 1091 2.880268 TCCATCGCCATTGATCAATCAC 59.120 45.455 18.16 11.80 36.36 3.06
990 1092 2.880268 GTCCATCGCCATTGATCAATCA 59.120 45.455 18.16 3.45 34.44 2.57
991 1093 2.227388 GGTCCATCGCCATTGATCAATC 59.773 50.000 18.16 7.45 0.00 2.67
992 1094 2.233271 GGTCCATCGCCATTGATCAAT 58.767 47.619 15.36 15.36 0.00 2.57
993 1095 1.064832 TGGTCCATCGCCATTGATCAA 60.065 47.619 11.26 11.26 0.00 2.57
994 1096 0.545646 TGGTCCATCGCCATTGATCA 59.454 50.000 0.00 0.00 0.00 2.92
1026 1128 1.293498 GGAGAAGTCGCCAAGCTCA 59.707 57.895 0.00 0.00 35.76 4.26
1028 1130 3.471620 TGGAGAAGTCGCCAAGCT 58.528 55.556 0.78 0.00 42.86 3.74
1113 1215 3.702045 CCTCTTGGTCTGGGTAAGTAGAG 59.298 52.174 0.00 0.00 0.00 2.43
1175 1280 3.072184 CCAGGGAGGAAGATGTATTGGAG 59.928 52.174 0.00 0.00 41.22 3.86
1176 1281 3.048600 CCAGGGAGGAAGATGTATTGGA 58.951 50.000 0.00 0.00 41.22 3.53
1177 1282 2.487986 GCCAGGGAGGAAGATGTATTGG 60.488 54.545 0.00 0.00 41.22 3.16
1178 1283 2.441001 AGCCAGGGAGGAAGATGTATTG 59.559 50.000 0.00 0.00 41.22 1.90
1179 1284 2.781667 AGCCAGGGAGGAAGATGTATT 58.218 47.619 0.00 0.00 41.22 1.89
1180 1285 2.503869 AGCCAGGGAGGAAGATGTAT 57.496 50.000 0.00 0.00 41.22 2.29
1181 1286 2.270434 AAGCCAGGGAGGAAGATGTA 57.730 50.000 0.00 0.00 41.22 2.29
1182 1287 1.283321 GAAAGCCAGGGAGGAAGATGT 59.717 52.381 0.00 0.00 41.22 3.06
1183 1288 1.563410 AGAAAGCCAGGGAGGAAGATG 59.437 52.381 0.00 0.00 41.22 2.90
1184 1289 1.843206 GAGAAAGCCAGGGAGGAAGAT 59.157 52.381 0.00 0.00 41.22 2.40
1197 1302 4.626042 TCAGTCAAGACTTGAGAGAAAGC 58.374 43.478 18.24 5.00 41.01 3.51
1200 1305 6.097554 AGTTTCTCAGTCAAGACTTGAGAGAA 59.902 38.462 28.81 28.81 43.41 2.87
1228 1333 0.173708 GAAGGTAGTCGACAGCAGGG 59.826 60.000 19.50 0.00 0.00 4.45
1231 1336 0.251653 AGGGAAGGTAGTCGACAGCA 60.252 55.000 19.50 0.00 0.00 4.41
1232 1337 0.173708 CAGGGAAGGTAGTCGACAGC 59.826 60.000 19.50 13.05 0.00 4.40
1233 1338 1.835494 TCAGGGAAGGTAGTCGACAG 58.165 55.000 19.50 0.00 0.00 3.51
1234 1339 2.100197 CATCAGGGAAGGTAGTCGACA 58.900 52.381 19.50 0.48 0.00 4.35
1235 1340 2.376109 TCATCAGGGAAGGTAGTCGAC 58.624 52.381 7.70 7.70 0.00 4.20
1236 1341 2.820728 TCATCAGGGAAGGTAGTCGA 57.179 50.000 0.00 0.00 0.00 4.20
1237 1342 3.243907 GGATTCATCAGGGAAGGTAGTCG 60.244 52.174 0.00 0.00 0.00 4.18
1238 1343 3.711704 TGGATTCATCAGGGAAGGTAGTC 59.288 47.826 0.00 0.00 0.00 2.59
1239 1344 3.713764 CTGGATTCATCAGGGAAGGTAGT 59.286 47.826 0.00 0.00 0.00 2.73
1240 1345 3.969976 TCTGGATTCATCAGGGAAGGTAG 59.030 47.826 0.00 0.00 33.36 3.18
1242 1347 2.507471 GTCTGGATTCATCAGGGAAGGT 59.493 50.000 0.00 0.00 33.36 3.50
1243 1348 2.484417 CGTCTGGATTCATCAGGGAAGG 60.484 54.545 0.00 0.00 33.36 3.46
1244 1349 2.169352 ACGTCTGGATTCATCAGGGAAG 59.831 50.000 0.00 0.00 33.36 3.46
1245 1350 2.093500 CACGTCTGGATTCATCAGGGAA 60.093 50.000 0.00 0.00 33.36 3.97
1247 1352 1.208052 ACACGTCTGGATTCATCAGGG 59.792 52.381 0.00 0.00 33.36 4.45
1249 1354 4.110036 TGTACACGTCTGGATTCATCAG 57.890 45.455 0.00 0.00 0.00 2.90
1250 1355 4.736126 ATGTACACGTCTGGATTCATCA 57.264 40.909 0.00 0.00 0.00 3.07
1251 1356 5.221263 ACCTATGTACACGTCTGGATTCATC 60.221 44.000 0.00 0.00 0.00 2.92
1252 1357 4.649674 ACCTATGTACACGTCTGGATTCAT 59.350 41.667 0.00 0.00 0.00 2.57
1253 1358 4.021229 ACCTATGTACACGTCTGGATTCA 58.979 43.478 0.00 0.00 0.00 2.57
1266 1371 6.316140 TGTCAATCAATCAGCAACCTATGTAC 59.684 38.462 0.00 0.00 0.00 2.90
1278 1383 4.067192 TCACCACAGTGTCAATCAATCAG 58.933 43.478 0.00 0.00 44.83 2.90
1279 1384 4.067192 CTCACCACAGTGTCAATCAATCA 58.933 43.478 0.00 0.00 44.83 2.57
1280 1385 4.318332 TCTCACCACAGTGTCAATCAATC 58.682 43.478 0.00 0.00 44.83 2.67
1281 1386 4.356405 TCTCACCACAGTGTCAATCAAT 57.644 40.909 0.00 0.00 44.83 2.57
1311 1416 6.207025 CCAATGGAAGATCATTCTCAAGATCC 59.793 42.308 0.00 0.00 41.16 3.36
1321 1426 4.868172 TCTCACCCAATGGAAGATCATT 57.132 40.909 0.00 0.00 37.81 2.57
1352 1475 1.207329 AGATTAAGCGAAAGGAGCGGT 59.793 47.619 0.00 0.00 41.69 5.68
1354 1477 4.342352 AAAAGATTAAGCGAAAGGAGCG 57.658 40.909 0.00 0.00 40.04 5.03
1363 1486 2.166007 CGGCGACAAAAAGATTAAGCG 58.834 47.619 0.00 0.00 0.00 4.68
1544 1670 4.069232 CAAGCTCCTCGGCCGTGA 62.069 66.667 27.84 21.84 0.00 4.35
1559 1685 4.704833 GCTGCCGGAGCTGGTCAA 62.705 66.667 5.05 0.00 45.21 3.18
1571 1697 3.745803 GCTGCTCAAGGTGCTGCC 61.746 66.667 9.91 0.00 45.39 4.85
1696 1822 4.785453 GGCCTCGAGCAAGGTGGG 62.785 72.222 6.99 0.00 46.50 4.61
1714 1840 3.053896 GGCTGTAACGGTGGTGCC 61.054 66.667 0.00 0.00 0.00 5.01
1720 1846 2.125269 GGCGATGGCTGTAACGGT 60.125 61.111 0.00 0.00 39.81 4.83
1839 2018 3.320879 CTCCATCACCGCCTGCAGT 62.321 63.158 13.81 0.00 0.00 4.40
2049 2233 4.440880 CTTTCTGCCTGAGATAAGTCTGG 58.559 47.826 0.00 0.00 38.32 3.86
2151 2343 9.347240 ACATCATCTATATGGGTTTCTTTTCTG 57.653 33.333 0.00 0.00 33.61 3.02
2170 2380 5.651139 CCCATGGAATCCAGATTACATCATC 59.349 44.000 15.22 0.00 46.56 2.92
2250 2472 0.038166 TTGGTCTTCCCTGTGCATCC 59.962 55.000 0.00 0.00 0.00 3.51
2781 3419 6.939730 TCAAGTGTGATGCTATTTCCTGTTTA 59.060 34.615 0.00 0.00 0.00 2.01
2819 3457 4.761739 GGTTCTGTTTCATTGATGTCCTCA 59.238 41.667 0.00 0.00 0.00 3.86
2834 3498 0.740737 GCTGCAGTTGTGGTTCTGTT 59.259 50.000 16.64 0.00 34.57 3.16
2902 3566 3.430374 GCTCACATAGACACGTACCCATT 60.430 47.826 0.00 0.00 0.00 3.16
2924 3596 4.885907 AGTACCATCCATTCTGCATTTCTG 59.114 41.667 0.00 0.00 0.00 3.02
2925 3597 5.121380 AGTACCATCCATTCTGCATTTCT 57.879 39.130 0.00 0.00 0.00 2.52
2926 3598 6.017605 CAGTAGTACCATCCATTCTGCATTTC 60.018 42.308 0.00 0.00 0.00 2.17
2927 3599 5.824624 CAGTAGTACCATCCATTCTGCATTT 59.175 40.000 0.00 0.00 0.00 2.32
2928 3600 5.130975 TCAGTAGTACCATCCATTCTGCATT 59.869 40.000 0.00 0.00 0.00 3.56
2929 3601 4.655649 TCAGTAGTACCATCCATTCTGCAT 59.344 41.667 0.00 0.00 0.00 3.96
2930 3602 4.030216 TCAGTAGTACCATCCATTCTGCA 58.970 43.478 0.00 0.00 0.00 4.41
2973 3645 4.137543 ACTGGATGAACTGGAAACACTTC 58.862 43.478 0.00 0.00 34.78 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.