>input_sequence_63477
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ATGGCGATGGACCAAGAGC
TGCCGCTTGAGCTTGGCGACTTCTCCATCGCCATGGACGCGTCGTCCCTCGCCGCCCTCTGGCCGGCGACGCCGCTGCTC
CCGCCGGATCTCCACTCTACTT---ACCCAGACCAAGAGGTTCGCCGGCCATCTTAAATCTTCTCTCCGCCTTCTTCTCC
TCCAATACATCTTCCTCCCTGGCTTTCTCTCAAGTCTTGACTGAGAAACTGCCCCTGCTGTCGACTACCTTCCCTGATGA
ATCCAGACGTGTACATAGGTTGCTGATTGATTGACACTGTGGTGAGATCCTCCATGGATCTTGAGAA-------------
-----TGATCTTCCATTGGGTGAGATCGTGCATTACCGCTCCTTTCGCTTAATCTTTTTGTCGCCGTGGCGTGGCATGCA
GAGCTCCTCGTCGCCGTGGCGTGCCAT---GCAGATCGTGGAGGAGGTGAGGCGGAGGCTGGCCGCGGCCACGGCGGAGC
TGGAGGCGGCCAAGGAGGAGGTGCGCCGCAAGGAGCAGAGCATCGCGGCCCTGCTGGAGCTCGTGCGCCTCACGGCCGAG
GAGCTTGACCAGCTCCGGCAGCACCTTGAGCAGCTCCGGCAGCACCTGCAGCTGGCCCGCGAGCTGGCGGCAACGACGAC
GTCAAGCAGCAGCGACTCGGGCGCGAGCGTCCCAACCTTCTCCCCACCAGCCGCCAACCCCCCCACCTTGCTCGAGGCCG
GCACCACCGTT-----------------------------------------------------ACAGCCATCGCCATAG
ATACCAGGAGCGCGCCAGTTGCTATCGACGACGACAGGACCGAGGCGGTGCTCGAGCAGCTGGCGGCCAAGAGGCCATTG
CCGCAGCGGGGGCAGCTACTGCAGGCGGTGATGGAGGCAGGGCCTCTCCTGGAGAACCTGCTGGTGGCAGGGCCGGTGCC
GCAGTGGCGCAACCCGCCACCTGTGCAGCCGATCCCCAGCCCCGTCATATCGGCGCCTTCAGGCTCTCGTGCCCCCATGG
GTTGGGGGCCATGGTAG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3D_1_TraesCS3D01G541100
GAGCCGCCGAGCGTCTGTCTCCGCCATCGTAAGCGACTGGCGGTAGATCCACGCGAGTAACCCGCCGCGGCGGTGGACAG
AGCTCTCCGCCGCGTCCCTCTCCCTTGCAGGCGAAGCAACAGGACATCCTCGATTCCCTCCGGTTGGAGGCAGCTGCGGA
GGCCAGACGCCGTCGCCGGCAGGAGATGGAGGCACAGCAGGCCGCGAAGGAGGTGGAGATGCTCGCCTACATGGATGAGG
TCGAGCAGGAGGAGGGTGGGACGGGGCCCTCCTACCCGCTCGTCCAGCCGGCGCCCGGCATTGTCGTCGTGGACATCTCC
GACGACGAAGAGTAACTAGGGTAGTACGTAGGATTTTTTTTGCATGCTTTTTATGGATGTAGGGGATGAAATATGAGAGA
AGCGGATGCAAAGTGGCTAATTTGAGGCGTTACTGGTCTCTGTCCGCGGATGTCTGAGGGGCCTAATTTGCAAAGTCCGG
CTGTAGATGCTCTTAGCGGTACACAAAATGGAAAAAATGAAGGGGCCGGACGGGGTGACACTTTGTGGGAGGGCCCAACA
CGAGACAAGGAAGGAGACACAAAGGAGAAAAGGGCAAAAGGGAAGACGGAAAGAGAAACGGCGAGGACGGTCCTTTCTCC
CTAAGCT---------AGGATCCCCAGCCAGCCAACCAGCATCTTCTCATTCCCTTTT----------------------
--------------------------TAACTTTCACCATGCAAAATAATAATAATAATTTGGAATATGCATGTTCTCATC
CGAACACAGGTGATAATAGGCAGCCGTGATGGCACATTCCATATGTTTCCATTCAGGAATGGAAACACGGCCGGCGAGTA
TGGAAGGGAGC-AAAACCACATTGACTCCTGGCGCTGGCTGTACACCATCTGTCCTCCCTTCATATCCCCTTCTCTCTCT
CATACACAACCGACCTCTACGGCTTCCTTCTTTTGCC-------------------------------------------
ATCCTAAAGGAAGGGAGGAGACGAGAGGAGAGATCCAAGAGCAGAGACAAGTGATTGATCAATGGCGATGGACCAAGAGC
TGCCGCTTGAGCTTGGCGACTTCTCCATCGCCATGGACGCGTCGTCCCTCGCCGCCCTCTGGCCGGCGACGCCGCTGCTC
CCGCCGGATCTCCACTCTACTT---ACCCAGACCAAGAGGTTCGCCGGCCATCTTAAATCTTCTCTCCGCCTTCTTCTCC
TCCAATACATCTTCCTCCCTGGCTTTCTCTCAAGTCTTGACTGAGAAACTGCCCCTGCTGTCGACTACCTTCCCTGATGA
ATCCAGACGTGTACATAGGTTGCTGATTGATTGACACTGTGGTGAGATCCTCCATGGATCTTGAGAA-------------
-----TGATCTTCCATTGGGTGAGATCGTGCATTACCGCTCCTTTCGCTTAATCTTTTTGTCGCCGTGGCGTGGCATGCA
GAGCTCCTCGTCGCCGTGGCGTGCCAT---GCAGATCGTGGAGGAGGTGAGGCGGAGGCTGGCCGCGGCCACGGCGGAGC
TGGAGGCGGCCAAGGAGGAGGTGCGCCGCAAGGAGCAGAGCATCGCGGCCCTGCTGGAGCTCGTGCGCCTCACGGCCGAG
GAGCTTGACCAGCTCCGGCAGCACCTTGAGCAGCTCCGGCAGCACCTGCAGCTGGCCCGCGAGCTGGCGGCAACGACGAC
GTCAAGCAGCAGCGACTCGGGCGCGAGCGTCCCAACCTTCTCCCCACCAGCCGCCAACCCCCCCACCTTGCTCGAGGCCG
GCACCACCGTT-----------------------------------------------------ACAGCCATCGCCATAG
ATACCAGGAGCGCGCCAGTTGCTATCGACGACGACAGGACCGAGGCGGTGCTCGAGCAGCTGGCGGCCAAGAGGCCATTG
CCGCAGCGGGGGCAGCTACTGCAGGCGGTGATGGAGGCAGGGCCTCTCCTGGAGAACCTGCTGGTGGCAGGGCCGGTGCC
GCAGTGGCGCAACCCGCCACCTGTGCAGCCGATCCCCAGCCCCGTCATATCGGCGCCTTCAGGCTCTCGTGCCCCCATGG
GTTGGGGGCCATGGTAGCAGCTCTTCTCA----TTTTCTACTCGTCGACGATAC-TAGGAATTCATGTATTTCCAGACTT
ATCTCAGGCAGAAAGCAAGGTGCCAGCTACTATGAAAAGTTCTG--------TAATCTTTGTAGACTGAACTTTTTCTGA
ATTGATTGAACATACAGAAGAACAGAAAAGAAA------------------CCCATATAGATGATG---T-AATCTGGAT
TCCATGGGGAATTAGGAGGTTACAGGCCGC--------ATAAATGAGAAATGGCACCCGATCGCATCGACGGGATGCACA
GG------GAAGACCAATTATTGGCTTGAACTT-GTCTTGAACAATGATCATCATGAAT-----AAAACAGGCC--ACAT
TTGCG--AATGTTAC------AGAGACAAACCTCATACATCTCCCCAACAGTGATGGTATTGCCTGTG--------TCGG
TATGATAAGTAC---ATGAATCATGAAAACATTCGACGGAAGAGGCAAAAG-AAAAGGTAC-ATGAATTTACATACAAGA
CAAAATATCACCAGGCAATGGTGCTTTCTCCGTATATGAACACTCTGTCCTCTA---AATCCCTGATCCACTGGCATACT
CTGTTGCATATCTTGATCGCTTGGGTCTGCAA----AATACGTGTGCTCAAAGTAAGATCCATCAGGTTATTACACAGTG
---ATAAATGAT-GGATTGATAGTATTGCTGAACTGT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
GTGGC-----AGATGCTAACCTTGTCGGCCAGTGGACTGAAGGCTGCATACAGCTCAAAATCCTGGGTTATCCAGCTCAA
CATAACTGCAACAAAAGGGAAATTA----TGTAACAAAGTAATTGTGGCACACATAGGTAAACAGGAAATAGCATCACAC
TTGAGCTAGTAAAATTTG--------------------------AGGACATCAATGAAACAGAACCACAACTGCAGCAAG
TAAAGACATATCTGGTGCCTCATAACAGCTAGCAGCTCATATCCCAATGGG--------TACGTGTCTATGTGAGCAGAA
ATGCAGAATGGATGGTACTACTGAATGGTTTTAGGTGTTTGAATGAAGTGTTTCCAGTTCATCCAGTTCA
>chr3B_506
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAATGGAGGAAATGAAGGGGCCAGACGGGCCGATACCTCGTGGGAGGGCCCAACA
CGAGGAAAGGAAGGAGACACAAAGGTGAAAAGGGAAAAAGGGAAGACGGAAAGAGTAACGGCGAGGACGGTCCTTTCTTT
CTTCATAGGACTAGGAAGGATCCCCGGCCAGGCAACCAGCATCTTCTCATAATCCCATTCCCTTTT----------TAAT
TAATTAATTAATTAATTAATCTATAATAACTTTCATCATGCGATT-----------------TCGTGT----TTCTCATC
CAAGCACAGGTGATAATAGGCAGGCGTGATGGCACATTCCATATGTTCCCATTCGGGAATGGAAACACGGGCGCCGTGTA
TGGAAGGGAGC-AAAACCACATTGACTCCT--------------------TGGCCTCCCTTCCTATACAAAAATCTCCCT
CTCC------------CTACGGCTTCCTTCTTATTTCA--TCACCGTGTCTTCTTCTTCTTTTGC--------CATCCCA
ATCCCAAAGGAAGGGAGGAGACGAGAGGAGAGATCAA----------------------CAATGGCCATGGACCAAGAGC
TGCCGCTCGGGCTCGGCGACTTCTCCATCGCCATGGACGCCTCCTCCCTCGCCGCCCTCTGGCCCCCGACGCCGCTCCTC
CCGCCGGATCTCCAATCTGCTT---ACCAAGACCAAGAGGTTCGCCGGCCATCTTAAATCTTCTCCCGCCT---------
---------TCTTCCTCCCTGCCTCTCTCTCAAGTCTTGACTGAGAAACTGCGCCCTGCCGATTTTCTTCTTC-----GA
ATCCAGACGTTTACATAGGTTG----TTGATTGAAACTGTAATGAGATCCTCCATAGATCTTGAGCAGACGTTGAAGCCC
TTT---------CCGTTGGGTGAGATCGTGCATTGCTGCTCCTTTGGCTTAATCTTTGTCGCT--GTGGCGTGGCATGCA
GAGCTCTTCGTCGCCGTGGCGTGGCATGCAGCAGATCGTGGAGGAGGCGAGGCGGAGGCTGGCCGCGGCCACAGCAGAGC
TGGAGGCGACCAAGGAGGAGGTGCGCCGCAAGGAGCAGAGCATCGCCGCCCTGCTGGAGCTCGTGCGCCGCATGGCCGAC
GAGCGCGACCAGCTCCAGCA---------CCAGGTCCGGCAGCACCTGCTGCTGGCCCGCGAGCTGGCGGCCGCGACGAC
GTCCAGCAGCAGCGACTCAGGCGCGAGCTTCCCGACCTTCTCCCCGACGGCCGCCAACCCCTCCACCTTGCTCAAGGCCA
GCGCCGCCGTTGAGGA----------------------------------------------------------------
----CAGGAGCGCACCAGTTGCTATCGACGACGACAGGACCGCGGCGGTGCTCGAGCAGCTGGCGGCCAAGAGGCCGCTG
CCACAGCAGGGGCAGCTGCTGCAGGCGGTCATGGAGGCAGGGCCTCTCCTGGAGAACCTGCTGGTGGCAGGGCCAGTGCC
GCAGTGGCGCGACCCGCCGCCGGTGCAGCCGATCCCCAGCCCCGTCATATCGGCGCCTTCAGGCTCTCGTGCTCCCATGG
GCT-GGGGCCATGGTAGCAGCTCTTCTCTCTTTTTTTCTACTCATCAACGATAC-TAGGAATTCATGTATTTTCAGACTT
ATCTCAGGCGGAAAGCAAGGTGCCATCTACTATGAAAAGTTTTG--------TAATCTTTGTAGACTGAACTTTTCCTGA
ATTGATTGAACATACAGAAGAAACGAAAAGAAAAGAAACAGTTTCTTCAAACCCATATATATGATG---T-AATCTGGAC
TCCATGGGGAATTAGGAGGTTACAGGCCGC--------AGAAATGAGAAATGGCACCCGATCGCATCGACAAGATGCACC
GG------AAAAACCAATTATTGGCTTGAACTTTGTCTTGAACAACGATCATCATGAAT-----AAAAAGGACC--ACAT
TTGCGATAATGTTAC------AGAGACAAACCTCATACATCTCCCCAACAGTGATGGTATTGCCTGTG--------TCGG
TATGATAAGTAC---ATGAATCATGAAAACATTCGACGGAAGAGGCAAAAAAGAAAAGTAC-ATGAATTTACATACAAGA
CAAAATATCACCAGGCAATGGTGCTTTCTCCGTATATGAACACTCTGTCCTCTA---AATCCCTGATCCACTGGCATACT
CTGTTGCATATCTTGATCGCTTGGGTCTGCAA----AATGCGTGTACTCAAAGTAAGATCCATCAGGTTATTACACGGTG
---ATAGATGATGGGATTGATAGTATTGCTGAACTGT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
GTGGC-----AGATGCTAACCTTGTCGGCCAGCGGACTGAAGGCTGCATACAGCTCAAAATCCTGGGTTATCCAGCTCAA
CATAACTGCAACAAAAGGGAAATTA----TGTAACAAAGTAACTGCGGCACACATAGGGAAATAGGAAATAGCATCACAC
TTCAGCTAGTAAAATTCAAGAAAATTCACGACTAAGGTACTCCTAGGACATCAATGCCACAGAACCACTACTGCAGCAAG
CAATAACAGCTAG------------------GCAGTTTATATGCCTATGGG--------TACGTGTCCATTA--------
--GCAGAATGGATGGTACTACTGAATGGTTTTAGGTCTTTGAATTAAGTG--------------------
>chr3A_525
GCGGGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GGGCTGATACCTCGTGGGAGGGCCCAACA
CGAGGAAATGAAGGAGACACAAAGGTGAAAAGGGCAAAAGGGAAGACGGAAAGAGTAACGGCGAGGACGGTCCTTTCTTC
CTTCC---------------------GCCAGCCAACCAGCATCTTCTCATAATCTCATTCCGTTTTTACTGTAATGTAAT
TAATTAATTATTAAATAC-----TAATAGCTTTCACCATGCAATTTATTTTACTGCTATATCTCGTGT----TTCTCGTC
TATAG--AGGAGATAATAGGAAGGCGTGATGGCACATTCCAAATGTTTCCATTCGGGAATGGAAACACGGCCGCCGTGTA
TGGAAGGGAGGAAAAACCACATTGACTCGTGGCGCTGGCTGTACACCATCTGTCCTCCCTTCCTATCCATCTCCG-----
---------------TCTACGGCTTCCTTTTTATTATTATTCACCATGCCTTCTTCTTTTGCCACAAGGCAGGCATCCTA
ATCCCAAAGCAAGGGAGA--------------------------------------GATCAATGGCGATGGACCAAGAGC
TGCCGCTCGGGCTCGGCGACTTCTCCCTCGCCTCCCTCTG------------------------------GCCGCTGCTC
CCGCCGGATCTCCAATCTACTTCTTACCCAGACCAAGAGGTTCGCCGGCCATCTTAATTCTTCTCTCCGCCTTCTTCTCT
AAT-----------------------------------------------------------------------------
-----------------GGTTG----TTGATTGACACTCTAGTGAGATCGTCTGTAGATCTTGAGCAGACGTTGAAGCCC
TTTGGTGATCTTCCATTGGGTGAGATCGT-------------------TTAATCTTT-----------------------
---------GTCCCCGTGGCGTGCCAT---GCAGATCGTGGAGGAGGTGAGGCGGAGGCTGGCCGCGGCCACGGCGGAGC
TGGAGGCAGCCAAGGAGGAGGTGCGCCGCAAGGAGCAGAGCATCGCCGCCCTGGTGGAGCTCGTGCGCCGCACGGCCGAG
GAGCGCGACCAGCTCCAGCAGCACCTTGACCAGCTCCGGCAGCACCTGCTCCTGGCC---------------GCGACAAC
GTCAAGCAGCTGCGACTCAGGCGCCAGCGTCCCAACCTTCG------------------------CCTTGCTCAAGGCCA
GCACCGCCGTTGACAGGAGCACAGCCATCGCCATAGATATCAGGAGCGCGCCGTTGACAGGAGCACAGCCATCGCCATAG
ATATCAGGAGCGCGCCAGTTGCCATCGACGACAACAGGACCGCGGCGGTGCTCGAGCAGCTGGCGGCCAAGAGGCCATTG
CCACAAAGGGGGCAGCTGCTGCAGGCGGTAATGGAGGCAGGGCCTCTCCTGGAGAACCTGCTGGTGGCAGGGCCAGTGCC
GCAGTGGCGCAACCCGCCACCTGTGCAGCCAATCCCCAGCCCCGTCATATCGGCGCCTTCAGGCTCTCGTGCTCCCATGG
GTTGGGGGCCATGGTAGCGGCTCTTCTCA----TTTTCTACTCGTCGACGATACTTAGGAATTCATGTATTTTCAGACTT
ATCTCAGGCGGAAATCAAGGTGACAGCTACCATGAAAAGTTTTG--------TAATCTTTGTAGACTGAACTTTTTCTGA
ATTGATTGAACATACAGAAGAA-----AAGAAAAGAAACAGTTTCTTCAAACCCATATACATGATG---TAAATCTGGAT
TCCATGGGGAATTAGGAGGTTACAGGCCGC--------ATAAATGAGAAATGGCACCCGATCCCATCGACGAGATGCAGA
TGG------AAAACCAATTATTGGCTTGAACTT-GTCTTGAACAATGATCATCATGAAT-----AAAACAGACC--ACAT
TTGTG--AATGTTAC------AGAGACAAACCTCATACATCTCCCCAACAGTGATGGTATTGCCTGTG--------TCGG
TATGATAAGTAC---ATGAATCATGAAATCATTCGACGGAAGAGGCAAAAG-AAAAAGTAC-ATGAATTTACATACAAGA
CAAAATATCACCAGGCAATGGTGCTTTCTCCGTATATGAACACTCTGTCCTCTA---AATCCCTGATCCACTGGCATACT
CTGTTGCATATCTTGATCGCTTGGGTCTGCAA----AATACGTGTGCTCAAAGTAAGATCCAACAGGTTATTACACGGTG
---ATAAATAAC-GGATTGATAGTATTGCTGAACTGT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
GTGGC-----AGATGCCAACCTTGTCGGCCAGTGGGCTGAAGGCTGCATACAGCTCAAAATCCTGGGTTATCCAGCTCAA
CATAACTGCAACGAAAGGGAAATTA----TGTAACAAAGTAACTGTGGCACACATAGGCAAATAGGAAATAGCATCACAC
TTGAGCTAGTAAAATTCGAGAAAACC---------------CCTAGGACATCAATGACACAGAACCACGACTGCAGCAAG
TAGAGACATATCTGGTGCC-CATAACAGCTAGCAGCTCATATCCCTATGGGAGTATGGGTATGTGTCTGTGA--------
--GCAGAACGGATGGTACTACTGAATGGTTTTAGGTGTTTGAATTAAGTGTTTCCAATTCA---------
>chr6D_2067
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------AGAAACCAAGGTGCCAGCTACTATGAAAAAGTTTTGTGCGTACTACTGTTTTTAGACTAAAC-TTTTCTGA
ATTGATTGAATATACAGAAAG--------GAAGAAAAACAGTTACTCCAAACCTATATGTATGACG---T-AATTTGGAT
TCCATAGAGAACTAAAAGGTTACAGGCCAAG--TACATGGAAAAAAGAAATGGCGCCCGACCGCATCGACAA-----AAG
ATACACATAGAAACCAATTATTGGCCTTAACTT-GTCCCGAATAACGATCATCATTAAT-----AGGGCCACATTTACAT
TTGTG--ATAATTTTACCGAGAGAGACGAACCTCACACATCTCCCCAGCAGTGGTGGTATTGCCTGTGTGGCTGTGTCAG
TATGATAAGTACATGATGAATCATGAGAAATTTCGACTAAAGAAAC--AAAACAAAACAAATACGAATTTACATACAAGA
CAAAATATCACCAAGCAATGGTGCTTTCTCCGTTTATCAACACTCTGTCTTGTACTAGATCCCTAATCCATTGGCATACT
TTGTTGCATATCTTGATC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr6B_2100
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TG--------TAATGTTTTTAGACATAAC-TTTCCTGA
ATTTATTAAACATACAG------------GGAAAAAATAAGGTTCTCCAAACTTATATATATGATGTATT-AATTTGGAT
TCCATGGGGAATTAGAAGGTTACAGACCAAGCATACATATAAATAAGAAATGGCGCCTGATGGATCGCAGCATCGACAAG
ATACAAATAAAAACCAATTATTGGCCTTAATTT-GTCCTGAACAATGACCATGAAATAAAAAAAAGGGCCACATTTACAT
TTGTA--ATGGTGTTAAAGAGAGAGACAAACCTCATACATCTCCCCAACAGTGATGGTATTGCCTGTG--------TCAG
TATGGCAAGCAC---ATGAATCATGAAAGATTTCGACGAAAGAAACAAAAAAAAAAAGTAC-ACGAGTTTACATACAAGA
CAATATATCACCAGGCAATGGTGCTTTCTCCATGTATGAACAGTGTGTCTTGTA---GATCCCTGATCCACTGGCATACT
CTGTTGCATACCTTAATCGCTTGGGTCTGCAAGCAAAATGCGTGTACTCAAAGTAAGATTAGATACACCAGGACAGTATT
ACTATAGATGAT-GCATTAATCGCATCGCTGAACTGT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
GTAGGCAGATAGATGCCAACCTTGTCAGCCAGTGGACTGAAGGCGGCATACAGCTCAAAATCCTGGGTTATCCAGCTAAA
CATAACTGCAACAAAAGGGAAATTGGTTGTGTAACAAAATAACTGTGAAACACTTGGGCAAACAGGAAACAGCACG---G
TTGAGCTAGTAA--------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr6D_2339
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AGAGACAAACCTCATACATCTCCCCAACAGTGATGGTATTGCCTGTG--------TCAG
CATGTTAAGCAC---ATGAATCATGAAAATTTTCGACGAAAGAAGCA-AAAACAAAAGTAC-ACGAGTTTACATACAAGA
CAAAATATCACCAGGCAATGGTGCTTTCTCCGTGTATGAACACTCTGTCTTGTA---GATCCATGATCCACTGGCATACT
CTGTTGCATACCTTGATCGCTTGGGTCTGCAAGCAAAATGTGTGTACCCAAAGTAAGATTACATACATCAGGACAGTATT
ACTATAAATGAT-GCATTGATCGCATCGCTGAACTGT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
GTAGGCAGATAGATGCCAACCTTGTCAGCCAGTGGACTGAAGGCTGCATACAGCTCAAAATCCTGGGTTATCCAGCTAAA
CATAACTGCAACAAAAGGGAAATTGGTTGTGTAACAAAATAACT-TGAAACGCTTAGGCAAACAGGAAACAGCATG---C
TTGAGCTAGTAACTTCG----------ACAGTGCAGGTATTCCTGGGACATCAATGCCACAGAACCACAACTGCAGCAAG
CAATGAGATATCTGCCGGCTCGTAACAGCTACCAG---------------------------------------------
----------------------------------------------------------------------
>chr6A_2345
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAACCTCATACATCTCCCCAACAGTGATGGTATTGCCTGTG--------TCAG
TATGGTAAGCAC---ACGAATCATGAAAAAATTCGACGAAAGAAGC--AAAACAAAAGTAC-ACGAGTTTACATACAAGA
CAAAATATCACCAGGCAATGGTGCTTTCTCCGTGTATGAACACTCGGTCTTGGA---GATCCATGATCCACTGGCATACT
CTGTTGCATATCCTGATGGCTTAGGTCTGCAAGCAAAATGCGTGTACCCAAAGTAAGATTACATACATCAGGACAGTATT
ACTATAAATGAT-GCATTGGTCGCATCACTGAACGTTGTTGCGGGAATATTTTGCAACATATTTCAATGTGATTCGTTGT
ATGAATAATGAATAACTGAAGTAATAATATAAAAAGCTAAAACTGAAAATACATATAATTTATTATGTTTGATTACTATA
TAATTGTAATTTTTTTATTAACTATAAATAGCATAGTAGAATGAAAATTCTCTTGAATGTTTGCATGTTGAGATGAGTCT
TTTTTTCATGCATGTTTAATGATGAAGTGACATGCTTGCATGTTGGGAGACATATGATAGTGGAGGTGGGCCTTTTCTCA
TGCATGCTATGGGATGATGTGGCATTCTTGCATGTTGAGAGAAATAGTTAGTGGGGGCTAGCTATTTAGATATAGAAGAT
GTAGGCAGATAGATGCCAACCTTGTCAGCCAGTGGACTGAAGGCTGCATACAGCTCAAAATCCTGGGTTATCCAACTAAA
CATAACTGCAACAAAAAGGAAATTGGTTGTGTAACAAAATAACT-TGAAACGCTTAGGCAAACAGGAAACAGCATG---C
TTGAGCTAGTAACTTCG----------ACGGCGCAGGTACTCCTGGGACATCAATGCCACAGAACCACAACTGCAGCAAG
CAATGAGATATCTGCCGCCTCGTAACAGCTACCAG---------------------------------------------
----------------------------------------------------------------------
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------SS-------------S------S---S--S-S----------------
----SS-------------------S-----------------------------S----------------------S-
--SSSSS------------------S------------------------SSS--SS-----------------------
-------------------------------------------SS--S-SSSSSSSSS-SSSSSSSSSSSSS--------
-S---------------------S------------------------------S------------------S--S---
--------------------------------------------------------------S-----SSS------S--
-SSSSSSSSSSSSSS-----------------S-SS--------------------------------------------
----S------------------------------S-SSSSSSSSSSSSSSSSSSS------------------------
-------S-S---S--------------------------S--S--------------------SS--------------
--------------S----------------------------------------------------------------S
SSSSSSSSS------------S--S---------------------------S--SSSSSSSSSS-SSSS-S-SSSSS--
----------S-----------SSSS--------------S--------------S---------S--------------
----------------------------------S-S--------S-----------S-SS-SSS---------------
------S-------------------------------------------------------------------------
----------------------------------------------S----------------------S----------
----SS----------S------------S-------------------S---------------------SS-------
------------------S--------------------------SS-S------------S-----------S-----S
-----S--------------------------------------------------------------------------
---S--------------------------------------S-------------------------------------
--S--------------S-----------S--------------------------------------------S-----
------------------------------------------------------------------------S-------
------------------------------------------------------------------------S-------
-----------------------------------------S--------------------------------------
----------------------SS-----------------------------------S--------------------
-----------------------------------------------------------------------S--------
--------S--S-----------------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S---------------S---------------------
----------------S----------------------------------------S----------------------
---------------------------------------------S-------------------------SSSSSSSSS
SS------------------------------------------S-----------S----SSSSSSSSS
>forward_224
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CGAAGGAGGTGGAGATGCTC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_1333
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CCCTGCTGTCGACTACCTTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_225
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GAAGGAGGTGGAGATGCTCG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_1337
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GCTGTCGACTACCTTCCCTG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_445
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GGCGTTACTGGTCTCTGTCC-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_2472
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGATGCACA
GGGAAGACCAA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
