Multiple sequence alignment - TraesCS3D01G539200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G539200 chr3D 100.000 3558 0 0 1 3558 611303221 611306778 0.000000e+00 6571.0
1 TraesCS3D01G539200 chr3D 86.905 84 9 2 1356 1438 587384781 587384699 3.780000e-15 93.5
2 TraesCS3D01G539200 chr3B 93.143 1123 51 11 2446 3558 829055491 829056597 0.000000e+00 1624.0
3 TraesCS3D01G539200 chr3B 93.474 521 29 2 734 1250 829054044 829054563 0.000000e+00 769.0
4 TraesCS3D01G539200 chr3B 88.693 398 29 8 1446 1828 829054735 829055131 4.160000e-129 472.0
5 TraesCS3D01G539200 chr3B 93.116 276 12 2 1883 2155 829055216 829055487 7.160000e-107 398.0
6 TraesCS3D01G539200 chr3A 92.294 1129 74 11 2441 3558 746203538 746202412 0.000000e+00 1591.0
7 TraesCS3D01G539200 chr3A 86.772 567 33 14 692 1247 746205212 746204677 8.500000e-166 593.0
8 TraesCS3D01G539200 chr3A 86.472 547 51 13 1602 2136 746204510 746203975 2.380000e-161 579.0
9 TraesCS3D01G539200 chr3A 89.778 225 19 3 32 254 746205623 746205401 5.810000e-73 285.0
10 TraesCS3D01G539200 chr3A 90.291 103 6 3 1462 1560 746204616 746204514 8.010000e-27 132.0
11 TraesCS3D01G539200 chr3A 91.803 61 5 0 1339 1399 695912097 695912157 6.330000e-13 86.1
12 TraesCS3D01G539200 chr3A 90.000 50 5 0 2259 2308 746203901 746203852 8.240000e-07 65.8
13 TraesCS3D01G539200 chr7D 78.736 348 62 10 2504 2848 135350162 135350500 4.620000e-54 222.0
14 TraesCS3D01G539200 chr7D 85.443 158 21 2 984 1140 135348617 135348773 2.840000e-36 163.0
15 TraesCS3D01G539200 chr7D 82.000 150 24 2 993 1139 30845071 30844922 1.340000e-24 124.0
16 TraesCS3D01G539200 chr7B 77.534 365 62 14 2507 2866 97183675 97184024 6.020000e-48 202.0
17 TraesCS3D01G539200 chr7B 84.810 158 22 2 984 1140 97182107 97182263 1.320000e-34 158.0
18 TraesCS3D01G539200 chr7A 84.810 158 22 2 984 1140 134481519 134481675 1.320000e-34 158.0
19 TraesCS3D01G539200 chr7A 80.921 152 26 2 993 1141 31107388 31107237 2.240000e-22 117.0
20 TraesCS3D01G539200 chr7A 79.630 162 30 2 1632 1793 31106747 31106589 2.900000e-21 113.0
21 TraesCS3D01G539200 chr7A 89.474 76 6 2 1323 1397 150876715 150876641 1.050000e-15 95.3
22 TraesCS3D01G539200 chr5D 90.476 105 8 2 1339 1443 228558868 228558766 1.720000e-28 137.0
23 TraesCS3D01G539200 chr5D 84.746 118 18 0 998 1115 538417273 538417156 6.240000e-23 119.0
24 TraesCS3D01G539200 chr4A 84.746 118 18 0 998 1115 630878091 630877974 6.240000e-23 119.0
25 TraesCS3D01G539200 chrUn 93.243 74 4 1 1340 1413 42172251 42172179 1.350000e-19 108.0
26 TraesCS3D01G539200 chr2D 90.769 65 4 2 1338 1401 324997844 324997907 6.330000e-13 86.1
27 TraesCS3D01G539200 chr2D 90.625 64 4 2 1339 1401 639517577 639517515 2.280000e-12 84.2
28 TraesCS3D01G539200 chr4B 90.625 64 4 2 1339 1401 190180700 190180638 2.280000e-12 84.2
29 TraesCS3D01G539200 chr1D 89.231 65 5 2 1338 1401 202481429 202481492 2.940000e-11 80.5
30 TraesCS3D01G539200 chr5A 77.358 106 17 4 1342 1443 567262392 567262290 4.960000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G539200 chr3D 611303221 611306778 3557 False 6571.000000 6571 100.000000 1 3558 1 chr3D.!!$F1 3557
1 TraesCS3D01G539200 chr3B 829054044 829056597 2553 False 815.750000 1624 92.106500 734 3558 4 chr3B.!!$F1 2824
2 TraesCS3D01G539200 chr3A 746202412 746205623 3211 True 540.966667 1591 89.267833 32 3558 6 chr3A.!!$R1 3526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 669 0.249114 CCGTGGGTTTGGAAAAACGG 60.249 55.0 0.00 0.00 43.83 4.44 F
1389 1510 0.041839 GAACGATGCATGCGTCCATC 60.042 55.0 29.53 23.49 41.75 3.51 F
2250 2455 0.035056 ATTAGGACAGTGGCTGGTGC 60.035 55.0 0.00 0.00 35.51 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2231 2436 0.035056 GCACCAGCCACTGTCCTAAT 60.035 55.0 0.00 0.00 33.58 1.73 R
2255 2460 0.179166 GTGTTGGGTGCGCATATGTG 60.179 55.0 15.91 12.04 0.00 3.21 R
3055 3443 4.617762 GCAAGGTGTGTGGTAGACTAGTAC 60.618 50.0 0.00 0.00 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 106 9.882996 ACAAATACATGAACATTCTATAATGCG 57.117 29.630 0.00 0.00 45.41 4.73
104 107 9.882996 CAAATACATGAACATTCTATAATGCGT 57.117 29.630 0.00 0.00 45.41 5.24
114 117 9.542462 AACATTCTATAATGCGTAGAAGCTTTA 57.458 29.630 0.00 0.00 45.41 1.85
126 129 7.277098 TGCGTAGAAGCTTTACTAAAACCATAG 59.723 37.037 0.00 0.00 38.13 2.23
293 296 9.716531 TGCATGGACACATTTAAAAATTAATGA 57.283 25.926 5.82 0.00 34.35 2.57
294 297 9.971744 GCATGGACACATTTAAAAATTAATGAC 57.028 29.630 5.82 0.00 34.35 3.06
322 325 9.589111 TTTTTAAATGCCGATTAATAGGAAACC 57.411 29.630 17.88 1.46 0.00 3.27
323 326 7.883391 TTAAATGCCGATTAATAGGAAACCA 57.117 32.000 17.88 6.90 0.00 3.67
324 327 6.391227 AAATGCCGATTAATAGGAAACCAG 57.609 37.500 17.88 0.00 0.00 4.00
325 328 4.497291 TGCCGATTAATAGGAAACCAGT 57.503 40.909 17.88 0.00 0.00 4.00
326 329 5.617528 TGCCGATTAATAGGAAACCAGTA 57.382 39.130 17.88 0.00 0.00 2.74
327 330 6.182507 TGCCGATTAATAGGAAACCAGTAT 57.817 37.500 17.88 0.00 0.00 2.12
328 331 5.995282 TGCCGATTAATAGGAAACCAGTATG 59.005 40.000 17.88 0.00 0.00 2.39
329 332 5.995897 GCCGATTAATAGGAAACCAGTATGT 59.004 40.000 17.88 0.00 0.00 2.29
330 333 6.485648 GCCGATTAATAGGAAACCAGTATGTT 59.514 38.462 17.88 0.00 0.00 2.71
331 334 7.519970 GCCGATTAATAGGAAACCAGTATGTTG 60.520 40.741 17.88 0.00 0.00 3.33
332 335 7.352739 CGATTAATAGGAAACCAGTATGTTGC 58.647 38.462 0.00 0.00 0.00 4.17
333 336 7.226720 CGATTAATAGGAAACCAGTATGTTGCT 59.773 37.037 0.00 0.00 0.00 3.91
334 337 9.555727 GATTAATAGGAAACCAGTATGTTGCTA 57.444 33.333 0.00 0.00 0.00 3.49
335 338 9.914834 ATTAATAGGAAACCAGTATGTTGCTAA 57.085 29.630 0.00 0.00 0.00 3.09
336 339 9.914834 TTAATAGGAAACCAGTATGTTGCTAAT 57.085 29.630 0.00 0.00 0.00 1.73
337 340 8.823220 AATAGGAAACCAGTATGTTGCTAATT 57.177 30.769 0.00 0.00 0.00 1.40
338 341 8.823220 ATAGGAAACCAGTATGTTGCTAATTT 57.177 30.769 0.00 0.00 0.00 1.82
339 342 7.158099 AGGAAACCAGTATGTTGCTAATTTC 57.842 36.000 0.00 0.00 0.00 2.17
340 343 6.948309 AGGAAACCAGTATGTTGCTAATTTCT 59.052 34.615 0.00 0.00 0.00 2.52
341 344 8.107095 AGGAAACCAGTATGTTGCTAATTTCTA 58.893 33.333 0.00 0.00 0.00 2.10
342 345 8.736244 GGAAACCAGTATGTTGCTAATTTCTAA 58.264 33.333 0.00 0.00 0.00 2.10
343 346 9.556030 GAAACCAGTATGTTGCTAATTTCTAAC 57.444 33.333 0.00 0.00 0.00 2.34
344 347 8.863872 AACCAGTATGTTGCTAATTTCTAACT 57.136 30.769 0.00 0.00 0.00 2.24
345 348 9.953565 AACCAGTATGTTGCTAATTTCTAACTA 57.046 29.630 0.00 0.00 0.00 2.24
346 349 9.953565 ACCAGTATGTTGCTAATTTCTAACTAA 57.046 29.630 0.00 0.00 0.00 2.24
374 377 9.683069 AAAAGAGTAGTATGTTGCTGATTTTTG 57.317 29.630 0.00 0.00 0.00 2.44
375 378 6.846350 AGAGTAGTATGTTGCTGATTTTTGC 58.154 36.000 0.00 0.00 0.00 3.68
376 379 5.954335 AGTAGTATGTTGCTGATTTTTGCC 58.046 37.500 0.00 0.00 0.00 4.52
377 380 4.870123 AGTATGTTGCTGATTTTTGCCA 57.130 36.364 0.00 0.00 0.00 4.92
378 381 5.212532 AGTATGTTGCTGATTTTTGCCAA 57.787 34.783 0.00 0.00 0.00 4.52
379 382 5.609423 AGTATGTTGCTGATTTTTGCCAAA 58.391 33.333 0.00 0.00 0.00 3.28
380 383 6.054295 AGTATGTTGCTGATTTTTGCCAAAA 58.946 32.000 0.00 0.00 36.30 2.44
381 384 4.612932 TGTTGCTGATTTTTGCCAAAAC 57.387 36.364 1.25 0.00 34.63 2.43
382 385 4.005650 TGTTGCTGATTTTTGCCAAAACA 58.994 34.783 1.25 0.00 34.63 2.83
383 386 4.456911 TGTTGCTGATTTTTGCCAAAACAA 59.543 33.333 1.25 0.73 34.63 2.83
384 387 4.879104 TGCTGATTTTTGCCAAAACAAG 57.121 36.364 1.25 2.18 34.63 3.16
385 388 4.260170 TGCTGATTTTTGCCAAAACAAGT 58.740 34.783 1.25 0.00 34.63 3.16
386 389 4.699257 TGCTGATTTTTGCCAAAACAAGTT 59.301 33.333 1.25 0.00 34.63 2.66
387 390 5.182760 TGCTGATTTTTGCCAAAACAAGTTT 59.817 32.000 1.25 0.00 34.63 2.66
388 391 6.092092 GCTGATTTTTGCCAAAACAAGTTTT 58.908 32.000 1.25 5.16 42.91 2.43
389 392 7.094634 TGCTGATTTTTGCCAAAACAAGTTTTA 60.095 29.630 10.28 0.00 40.45 1.52
390 393 7.218014 GCTGATTTTTGCCAAAACAAGTTTTAC 59.782 33.333 10.28 7.03 40.45 2.01
391 394 8.329203 TGATTTTTGCCAAAACAAGTTTTACT 57.671 26.923 10.28 0.00 40.45 2.24
392 395 9.436957 TGATTTTTGCCAAAACAAGTTTTACTA 57.563 25.926 10.28 1.81 40.45 1.82
399 402 9.660180 TGCCAAAACAAGTTTTACTATTTTTCT 57.340 25.926 10.28 0.00 40.45 2.52
405 408 9.946165 AACAAGTTTTACTATTTTTCTTCCTCG 57.054 29.630 0.00 0.00 0.00 4.63
406 409 8.074370 ACAAGTTTTACTATTTTTCTTCCTCGC 58.926 33.333 0.00 0.00 0.00 5.03
407 410 7.739498 AGTTTTACTATTTTTCTTCCTCGCA 57.261 32.000 0.00 0.00 0.00 5.10
408 411 8.161699 AGTTTTACTATTTTTCTTCCTCGCAA 57.838 30.769 0.00 0.00 0.00 4.85
409 412 8.626526 AGTTTTACTATTTTTCTTCCTCGCAAA 58.373 29.630 0.00 0.00 0.00 3.68
410 413 9.406828 GTTTTACTATTTTTCTTCCTCGCAAAT 57.593 29.630 0.00 0.00 0.00 2.32
411 414 9.974980 TTTTACTATTTTTCTTCCTCGCAAATT 57.025 25.926 0.00 0.00 0.00 1.82
412 415 9.974980 TTTACTATTTTTCTTCCTCGCAAATTT 57.025 25.926 0.00 0.00 0.00 1.82
413 416 9.974980 TTACTATTTTTCTTCCTCGCAAATTTT 57.025 25.926 0.00 0.00 0.00 1.82
414 417 8.887036 ACTATTTTTCTTCCTCGCAAATTTTT 57.113 26.923 0.00 0.00 0.00 1.94
493 496 7.954788 TTTTCGATTTTATTTTGAGGGGTTG 57.045 32.000 0.00 0.00 0.00 3.77
494 497 6.658188 TTCGATTTTATTTTGAGGGGTTGT 57.342 33.333 0.00 0.00 0.00 3.32
495 498 6.019779 TCGATTTTATTTTGAGGGGTTGTG 57.980 37.500 0.00 0.00 0.00 3.33
496 499 5.536916 TCGATTTTATTTTGAGGGGTTGTGT 59.463 36.000 0.00 0.00 0.00 3.72
497 500 6.041069 TCGATTTTATTTTGAGGGGTTGTGTT 59.959 34.615 0.00 0.00 0.00 3.32
498 501 6.704050 CGATTTTATTTTGAGGGGTTGTGTTT 59.296 34.615 0.00 0.00 0.00 2.83
499 502 7.225734 CGATTTTATTTTGAGGGGTTGTGTTTT 59.774 33.333 0.00 0.00 0.00 2.43
500 503 8.815565 ATTTTATTTTGAGGGGTTGTGTTTTT 57.184 26.923 0.00 0.00 0.00 1.94
501 504 7.617041 TTTATTTTGAGGGGTTGTGTTTTTG 57.383 32.000 0.00 0.00 0.00 2.44
506 509 3.949113 TGAGGGGTTGTGTTTTTGTAGAC 59.051 43.478 0.00 0.00 0.00 2.59
518 521 8.622157 TGTGTTTTTGTAGACGGAAAATTATGA 58.378 29.630 0.00 0.00 0.00 2.15
533 536 9.520204 GGAAAATTATGATTGTATTGTGTGGAG 57.480 33.333 0.00 0.00 0.00 3.86
549 552 7.681939 TGTGTGGAGTTTCTTATTTGGATAC 57.318 36.000 0.00 0.00 0.00 2.24
580 583 5.071788 TCCTGTTCCTATTTCTGTGTGAGTT 59.928 40.000 0.00 0.00 0.00 3.01
597 600 1.067354 AGTTGCCCCTTTCTACGTACG 60.067 52.381 15.01 15.01 0.00 3.67
612 615 6.913170 TCTACGTACGTGAGTTTCCTATTTT 58.087 36.000 30.25 0.00 46.40 1.82
614 617 5.776744 ACGTACGTGAGTTTCCTATTTTCT 58.223 37.500 22.14 0.00 46.40 2.52
630 633 7.599998 TCCTATTTTCTGTGTTAGGTTACGAAC 59.400 37.037 0.00 0.00 34.18 3.95
664 667 2.676632 AACCGTGGGTTTGGAAAAAC 57.323 45.000 0.00 0.00 44.33 2.43
665 668 0.456628 ACCGTGGGTTTGGAAAAACG 59.543 50.000 0.00 0.00 33.62 3.60
666 669 0.249114 CCGTGGGTTTGGAAAAACGG 60.249 55.000 0.00 0.00 43.83 4.44
667 670 0.872451 CGTGGGTTTGGAAAAACGGC 60.872 55.000 0.00 0.00 33.62 5.68
668 671 0.531090 GTGGGTTTGGAAAAACGGCC 60.531 55.000 0.00 0.00 33.62 6.13
669 672 1.300311 GGGTTTGGAAAAACGGCCG 60.300 57.895 26.86 26.86 33.62 6.13
670 673 1.734748 GGTTTGGAAAAACGGCCGA 59.265 52.632 35.90 3.57 33.62 5.54
671 674 0.315886 GGTTTGGAAAAACGGCCGAT 59.684 50.000 35.90 19.90 33.62 4.18
672 675 1.540707 GGTTTGGAAAAACGGCCGATA 59.459 47.619 35.90 0.00 33.62 2.92
673 676 2.587956 GTTTGGAAAAACGGCCGATAC 58.412 47.619 35.90 15.97 0.00 2.24
674 677 2.188062 TTGGAAAAACGGCCGATACT 57.812 45.000 35.90 13.62 0.00 2.12
675 678 2.188062 TGGAAAAACGGCCGATACTT 57.812 45.000 35.90 17.38 0.00 2.24
676 679 2.506444 TGGAAAAACGGCCGATACTTT 58.494 42.857 35.90 22.94 0.00 2.66
677 680 2.485038 TGGAAAAACGGCCGATACTTTC 59.515 45.455 35.90 28.25 0.00 2.62
679 682 0.445043 AAAACGGCCGATACTTTCGC 59.555 50.000 35.90 0.00 46.71 4.70
680 683 0.671163 AAACGGCCGATACTTTCGCA 60.671 50.000 35.90 0.00 46.71 5.10
681 684 0.671163 AACGGCCGATACTTTCGCAA 60.671 50.000 35.90 0.00 46.71 4.85
682 685 0.671163 ACGGCCGATACTTTCGCAAA 60.671 50.000 35.90 0.00 46.71 3.68
683 686 0.444651 CGGCCGATACTTTCGCAAAA 59.555 50.000 24.07 0.00 46.71 2.44
684 687 1.135916 CGGCCGATACTTTCGCAAAAA 60.136 47.619 24.07 0.00 46.71 1.94
728 734 7.169308 CGATACGCCTTGTATGTTCTTCTAAAT 59.831 37.037 0.00 0.00 43.87 1.40
799 805 5.863965 TCTGGAATTATGCCACGAATATCA 58.136 37.500 0.00 0.00 0.00 2.15
802 808 4.396166 GGAATTATGCCACGAATATCAGGG 59.604 45.833 0.00 0.00 0.00 4.45
804 810 0.767375 ATGCCACGAATATCAGGGCT 59.233 50.000 0.00 0.00 44.85 5.19
819 825 2.224314 CAGGGCTTGACGAACTTTCTTC 59.776 50.000 0.00 0.00 0.00 2.87
891 897 4.144731 GCAAGTGATTTCGAACGTTTGAAG 59.855 41.667 25.74 15.95 32.48 3.02
904 914 5.479716 ACGTTTGAAGTTTTGAATCTCGT 57.520 34.783 0.00 0.00 0.00 4.18
978 996 0.768622 TTCGTCTCCCCCAACAACAT 59.231 50.000 0.00 0.00 0.00 2.71
983 1001 1.002624 TCCCCCAACAACATCGAGC 60.003 57.895 0.00 0.00 0.00 5.03
1098 1116 4.383861 CACCAGCTCTCCGCAGCA 62.384 66.667 0.00 0.00 42.40 4.41
1110 1128 3.715097 GCAGCAGTCAGGGAGGCT 61.715 66.667 0.00 0.00 36.99 4.58
1139 1157 0.173708 AAGTTCTCGCCGGTCAGATC 59.826 55.000 1.90 4.10 0.00 2.75
1275 1396 4.519906 TGGTTCCCACTTTTCTCTTCTT 57.480 40.909 0.00 0.00 0.00 2.52
1276 1397 4.207165 TGGTTCCCACTTTTCTCTTCTTG 58.793 43.478 0.00 0.00 0.00 3.02
1277 1398 3.004839 GGTTCCCACTTTTCTCTTCTTGC 59.995 47.826 0.00 0.00 0.00 4.01
1278 1399 2.863809 TCCCACTTTTCTCTTCTTGCC 58.136 47.619 0.00 0.00 0.00 4.52
1279 1400 2.443255 TCCCACTTTTCTCTTCTTGCCT 59.557 45.455 0.00 0.00 0.00 4.75
1280 1401 3.117512 TCCCACTTTTCTCTTCTTGCCTT 60.118 43.478 0.00 0.00 0.00 4.35
1281 1402 3.254411 CCCACTTTTCTCTTCTTGCCTTC 59.746 47.826 0.00 0.00 0.00 3.46
1282 1403 3.254411 CCACTTTTCTCTTCTTGCCTTCC 59.746 47.826 0.00 0.00 0.00 3.46
1283 1404 4.140536 CACTTTTCTCTTCTTGCCTTCCT 58.859 43.478 0.00 0.00 0.00 3.36
1284 1405 4.582240 CACTTTTCTCTTCTTGCCTTCCTT 59.418 41.667 0.00 0.00 0.00 3.36
1285 1406 4.824537 ACTTTTCTCTTCTTGCCTTCCTTC 59.175 41.667 0.00 0.00 0.00 3.46
1286 1407 4.437682 TTTCTCTTCTTGCCTTCCTTCA 57.562 40.909 0.00 0.00 0.00 3.02
1299 1420 5.126545 TGCCTTCCTTCATTCATTCATTCAG 59.873 40.000 0.00 0.00 0.00 3.02
1307 1428 9.994432 CCTTCATTCATTCATTCAGTTACTAAC 57.006 33.333 0.00 0.00 0.00 2.34
1309 1430 8.196802 TCATTCATTCATTCAGTTACTAACCG 57.803 34.615 0.00 0.00 0.00 4.44
1311 1432 7.591006 TTCATTCATTCAGTTACTAACCGAC 57.409 36.000 0.00 0.00 0.00 4.79
1312 1433 6.103997 TCATTCATTCAGTTACTAACCGACC 58.896 40.000 0.00 0.00 0.00 4.79
1313 1434 4.100707 TCATTCAGTTACTAACCGACCG 57.899 45.455 0.00 0.00 0.00 4.79
1314 1435 3.507233 TCATTCAGTTACTAACCGACCGT 59.493 43.478 0.00 0.00 0.00 4.83
1327 1448 2.006888 CCGACCGTACAATGCATCTTT 58.993 47.619 0.00 0.00 0.00 2.52
1328 1449 3.191669 CCGACCGTACAATGCATCTTTA 58.808 45.455 0.00 0.00 0.00 1.85
1329 1450 3.807622 CCGACCGTACAATGCATCTTTAT 59.192 43.478 0.00 0.00 0.00 1.40
1330 1451 4.986034 CCGACCGTACAATGCATCTTTATA 59.014 41.667 0.00 0.00 0.00 0.98
1331 1452 5.464057 CCGACCGTACAATGCATCTTTATAA 59.536 40.000 0.00 0.00 0.00 0.98
1333 1454 7.403421 CGACCGTACAATGCATCTTTATAAAA 58.597 34.615 0.00 0.00 0.00 1.52
1334 1455 7.906010 CGACCGTACAATGCATCTTTATAAAAA 59.094 33.333 0.00 0.00 0.00 1.94
1357 1478 5.897377 AATGAAAAGAAGGATTACCACCG 57.103 39.130 0.00 0.00 38.94 4.94
1358 1479 3.681593 TGAAAAGAAGGATTACCACCGG 58.318 45.455 0.00 0.00 38.94 5.28
1359 1480 2.124277 AAAGAAGGATTACCACCGGC 57.876 50.000 0.00 0.00 38.94 6.13
1360 1481 0.255033 AAGAAGGATTACCACCGGCC 59.745 55.000 0.00 0.00 38.94 6.13
1361 1482 0.620700 AGAAGGATTACCACCGGCCT 60.621 55.000 0.00 0.00 38.94 5.19
1362 1483 0.179054 GAAGGATTACCACCGGCCTC 60.179 60.000 0.00 0.00 38.94 4.70
1363 1484 0.620700 AAGGATTACCACCGGCCTCT 60.621 55.000 0.00 0.00 38.94 3.69
1364 1485 1.146263 GGATTACCACCGGCCTCTG 59.854 63.158 0.00 0.00 35.97 3.35
1365 1486 1.523938 GATTACCACCGGCCTCTGC 60.524 63.158 0.00 0.00 0.00 4.26
1366 1487 2.252072 GATTACCACCGGCCTCTGCA 62.252 60.000 0.00 0.00 40.13 4.41
1367 1488 1.635817 ATTACCACCGGCCTCTGCAT 61.636 55.000 0.00 0.00 40.13 3.96
1368 1489 2.252072 TTACCACCGGCCTCTGCATC 62.252 60.000 0.00 0.00 40.13 3.91
1369 1490 4.100084 CCACCGGCCTCTGCATCA 62.100 66.667 0.00 0.00 40.13 3.07
1370 1491 2.513204 CACCGGCCTCTGCATCAG 60.513 66.667 0.00 0.00 40.13 2.90
1371 1492 2.685017 ACCGGCCTCTGCATCAGA 60.685 61.111 0.00 0.00 38.25 3.27
1372 1493 2.293318 ACCGGCCTCTGCATCAGAA 61.293 57.895 0.00 0.00 40.18 3.02
1373 1494 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
1374 1495 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
1375 1496 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
1376 1497 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
1383 1504 3.432759 CATCAGAACGATGCATGCG 57.567 52.632 14.09 10.48 44.95 4.73
1384 1505 0.654160 CATCAGAACGATGCATGCGT 59.346 50.000 13.43 13.43 44.95 5.24
1385 1506 0.933097 ATCAGAACGATGCATGCGTC 59.067 50.000 26.87 26.87 41.75 5.19
1386 1507 1.083806 TCAGAACGATGCATGCGTCC 61.084 55.000 29.53 17.98 41.75 4.79
1387 1508 1.079197 AGAACGATGCATGCGTCCA 60.079 52.632 29.53 6.10 41.75 4.02
1388 1509 0.462581 AGAACGATGCATGCGTCCAT 60.463 50.000 29.53 20.19 41.75 3.41
1389 1510 0.041839 GAACGATGCATGCGTCCATC 60.042 55.000 29.53 23.49 41.75 3.51
1390 1511 0.462581 AACGATGCATGCGTCCATCT 60.463 50.000 29.53 11.98 41.75 2.90
1391 1512 0.462581 ACGATGCATGCGTCCATCTT 60.463 50.000 29.53 10.98 37.42 2.40
1392 1513 1.202521 ACGATGCATGCGTCCATCTTA 60.203 47.619 29.53 2.58 37.42 2.10
1393 1514 2.071540 CGATGCATGCGTCCATCTTAT 58.928 47.619 29.53 7.66 36.55 1.73
1394 1515 2.481568 CGATGCATGCGTCCATCTTATT 59.518 45.455 29.53 0.00 36.55 1.40
1395 1516 3.679502 CGATGCATGCGTCCATCTTATTA 59.320 43.478 29.53 1.04 36.55 0.98
1396 1517 4.152223 CGATGCATGCGTCCATCTTATTAA 59.848 41.667 29.53 0.58 36.55 1.40
1397 1518 5.334028 CGATGCATGCGTCCATCTTATTAAA 60.334 40.000 29.53 0.00 36.55 1.52
1398 1519 5.826601 TGCATGCGTCCATCTTATTAAAA 57.173 34.783 14.09 0.00 0.00 1.52
1399 1520 6.201226 TGCATGCGTCCATCTTATTAAAAA 57.799 33.333 14.09 0.00 0.00 1.94
1400 1521 6.264832 TGCATGCGTCCATCTTATTAAAAAG 58.735 36.000 14.09 0.00 0.00 2.27
1401 1522 6.127758 TGCATGCGTCCATCTTATTAAAAAGT 60.128 34.615 14.09 0.00 0.00 2.66
1402 1523 6.197096 GCATGCGTCCATCTTATTAAAAAGTG 59.803 38.462 0.00 0.00 0.00 3.16
1403 1524 5.636837 TGCGTCCATCTTATTAAAAAGTGC 58.363 37.500 0.00 0.00 0.00 4.40
1404 1525 5.034797 GCGTCCATCTTATTAAAAAGTGCC 58.965 41.667 0.00 0.00 0.00 5.01
1405 1526 5.392595 GCGTCCATCTTATTAAAAAGTGCCA 60.393 40.000 0.00 0.00 0.00 4.92
1406 1527 6.616947 CGTCCATCTTATTAAAAAGTGCCAA 58.383 36.000 0.00 0.00 0.00 4.52
1407 1528 7.257722 CGTCCATCTTATTAAAAAGTGCCAAT 58.742 34.615 0.00 0.00 0.00 3.16
1408 1529 7.432252 CGTCCATCTTATTAAAAAGTGCCAATC 59.568 37.037 0.00 0.00 0.00 2.67
1409 1530 8.250332 GTCCATCTTATTAAAAAGTGCCAATCA 58.750 33.333 0.00 0.00 0.00 2.57
1410 1531 8.811017 TCCATCTTATTAAAAAGTGCCAATCAA 58.189 29.630 0.00 0.00 0.00 2.57
1411 1532 9.434420 CCATCTTATTAAAAAGTGCCAATCAAA 57.566 29.630 0.00 0.00 0.00 2.69
1414 1535 8.973378 TCTTATTAAAAAGTGCCAATCAAAACG 58.027 29.630 0.00 0.00 0.00 3.60
1415 1536 8.873215 TTATTAAAAAGTGCCAATCAAAACGA 57.127 26.923 0.00 0.00 0.00 3.85
1416 1537 7.778470 ATTAAAAAGTGCCAATCAAAACGAA 57.222 28.000 0.00 0.00 0.00 3.85
1417 1538 5.717038 AAAAAGTGCCAATCAAAACGAAG 57.283 34.783 0.00 0.00 0.00 3.79
1419 1540 3.626028 AGTGCCAATCAAAACGAAGTC 57.374 42.857 0.00 0.00 45.00 3.01
1420 1541 3.214328 AGTGCCAATCAAAACGAAGTCT 58.786 40.909 0.00 0.00 45.00 3.24
1421 1542 3.003689 AGTGCCAATCAAAACGAAGTCTG 59.996 43.478 0.00 0.00 45.00 3.51
1422 1543 2.287547 TGCCAATCAAAACGAAGTCTGC 60.288 45.455 0.00 0.00 45.00 4.26
1423 1544 2.287547 GCCAATCAAAACGAAGTCTGCA 60.288 45.455 0.00 0.00 45.00 4.41
1424 1545 3.795150 GCCAATCAAAACGAAGTCTGCAA 60.795 43.478 0.00 0.00 45.00 4.08
1425 1546 4.549458 CCAATCAAAACGAAGTCTGCAAT 58.451 39.130 0.00 0.00 45.00 3.56
1426 1547 4.984161 CCAATCAAAACGAAGTCTGCAATT 59.016 37.500 0.00 0.00 45.00 2.32
1427 1548 5.117592 CCAATCAAAACGAAGTCTGCAATTC 59.882 40.000 0.00 0.00 45.00 2.17
1428 1549 4.891627 TCAAAACGAAGTCTGCAATTCA 57.108 36.364 0.00 0.00 45.00 2.57
1429 1550 4.847633 TCAAAACGAAGTCTGCAATTCAG 58.152 39.130 0.00 0.11 45.00 3.02
1430 1551 4.335315 TCAAAACGAAGTCTGCAATTCAGT 59.665 37.500 0.00 3.54 45.00 3.41
1431 1552 5.525745 TCAAAACGAAGTCTGCAATTCAGTA 59.474 36.000 0.00 0.00 45.00 2.74
1432 1553 4.992381 AACGAAGTCTGCAATTCAGTAC 57.008 40.909 0.00 0.00 45.00 2.73
1433 1554 3.990092 ACGAAGTCTGCAATTCAGTACA 58.010 40.909 0.00 0.00 43.32 2.90
1434 1555 3.990469 ACGAAGTCTGCAATTCAGTACAG 59.010 43.478 0.00 0.00 43.32 2.74
1435 1556 3.181526 CGAAGTCTGCAATTCAGTACAGC 60.182 47.826 0.00 0.00 43.32 4.40
1436 1557 3.692257 AGTCTGCAATTCAGTACAGCT 57.308 42.857 0.00 0.00 43.32 4.24
1437 1558 3.594134 AGTCTGCAATTCAGTACAGCTC 58.406 45.455 0.00 0.00 43.32 4.09
1438 1559 2.346847 GTCTGCAATTCAGTACAGCTCG 59.653 50.000 0.00 0.00 43.32 5.03
1439 1560 1.061711 CTGCAATTCAGTACAGCTCGC 59.938 52.381 0.00 0.00 38.02 5.03
1440 1561 1.078709 GCAATTCAGTACAGCTCGCA 58.921 50.000 0.00 0.00 0.00 5.10
1441 1562 1.464608 GCAATTCAGTACAGCTCGCAA 59.535 47.619 0.00 0.00 0.00 4.85
1442 1563 2.095768 GCAATTCAGTACAGCTCGCAAA 60.096 45.455 0.00 0.00 0.00 3.68
1443 1564 3.426695 GCAATTCAGTACAGCTCGCAAAT 60.427 43.478 0.00 0.00 0.00 2.32
1444 1565 4.093514 CAATTCAGTACAGCTCGCAAATG 58.906 43.478 0.00 0.00 0.00 2.32
1539 1675 1.144298 CCCCATCATTGCTCTCCATGA 59.856 52.381 0.00 0.00 0.00 3.07
1586 1734 5.096443 ACGTACTTACCACTCTAGCTAGT 57.904 43.478 20.10 1.46 0.00 2.57
1654 1805 8.459911 TGAGGAGTGACATAATTAATCGAGTA 57.540 34.615 0.00 0.00 0.00 2.59
1666 1817 1.681538 ATCGAGTAGACGCCACAGAT 58.318 50.000 0.00 0.00 0.00 2.90
1677 1828 1.153489 CCACAGATGAGGCCAGACG 60.153 63.158 5.01 0.00 0.00 4.18
1693 1844 1.523154 GACGCCATGCCAACTCCAAA 61.523 55.000 0.00 0.00 0.00 3.28
1828 1988 3.963428 TTCACTTCACTAGCTTCCCTC 57.037 47.619 0.00 0.00 0.00 4.30
1829 1989 3.176924 TCACTTCACTAGCTTCCCTCT 57.823 47.619 0.00 0.00 0.00 3.69
1832 1992 3.513515 CACTTCACTAGCTTCCCTCTCTT 59.486 47.826 0.00 0.00 0.00 2.85
1833 1993 4.707448 CACTTCACTAGCTTCCCTCTCTTA 59.293 45.833 0.00 0.00 0.00 2.10
1834 1994 5.362430 CACTTCACTAGCTTCCCTCTCTTAT 59.638 44.000 0.00 0.00 0.00 1.73
1835 1995 5.961421 ACTTCACTAGCTTCCCTCTCTTATT 59.039 40.000 0.00 0.00 0.00 1.40
1836 1996 5.860941 TCACTAGCTTCCCTCTCTTATTG 57.139 43.478 0.00 0.00 0.00 1.90
1837 1997 5.519808 TCACTAGCTTCCCTCTCTTATTGA 58.480 41.667 0.00 0.00 0.00 2.57
1838 1998 5.958380 TCACTAGCTTCCCTCTCTTATTGAA 59.042 40.000 0.00 0.00 0.00 2.69
1839 1999 6.440647 TCACTAGCTTCCCTCTCTTATTGAAA 59.559 38.462 0.00 0.00 0.00 2.69
1840 2000 6.536941 CACTAGCTTCCCTCTCTTATTGAAAC 59.463 42.308 0.00 0.00 0.00 2.78
1841 2001 4.849518 AGCTTCCCTCTCTTATTGAAACC 58.150 43.478 0.00 0.00 0.00 3.27
1847 2007 6.003950 TCCCTCTCTTATTGAAACCAAACTG 58.996 40.000 0.00 0.00 0.00 3.16
1856 2016 1.525619 GAAACCAAACTGTCTCGGTCG 59.474 52.381 0.00 0.00 0.00 4.79
1861 2024 3.612371 AACTGTCTCGGTCGCTCGC 62.612 63.158 0.00 0.00 0.00 5.03
1869 2059 2.569134 GGTCGCTCGCTCTGTCTT 59.431 61.111 0.00 0.00 0.00 3.01
1874 2064 1.064208 TCGCTCGCTCTGTCTTATGAC 59.936 52.381 1.85 1.85 43.20 3.06
1881 2071 2.898705 CTCTGTCTTATGACTGTGGGC 58.101 52.381 9.87 0.00 43.29 5.36
1886 2088 2.945668 GTCTTATGACTGTGGGCCATTC 59.054 50.000 10.70 7.70 39.94 2.67
1892 2094 0.609662 ACTGTGGGCCATTCATTTGC 59.390 50.000 10.70 0.00 0.00 3.68
1895 2097 1.207570 TGTGGGCCATTCATTTGCATC 59.792 47.619 10.70 0.00 0.00 3.91
2115 2317 6.434181 CGTGTGGAATACGTTCTATGTATG 57.566 41.667 0.00 0.00 46.79 2.39
2116 2318 5.975344 CGTGTGGAATACGTTCTATGTATGT 59.025 40.000 0.00 0.00 46.79 2.29
2143 2348 7.480810 AGATTTCTTATTTGTTATGCGTTCCC 58.519 34.615 0.00 0.00 0.00 3.97
2155 2360 4.864704 ATGCGTTCCCTTGTTAATTTGT 57.135 36.364 0.00 0.00 0.00 2.83
2156 2361 4.657436 TGCGTTCCCTTGTTAATTTGTT 57.343 36.364 0.00 0.00 0.00 2.83
2157 2362 4.363999 TGCGTTCCCTTGTTAATTTGTTG 58.636 39.130 0.00 0.00 0.00 3.33
2158 2363 3.738791 GCGTTCCCTTGTTAATTTGTTGG 59.261 43.478 0.00 0.00 0.00 3.77
2159 2364 4.500035 GCGTTCCCTTGTTAATTTGTTGGA 60.500 41.667 0.00 0.00 0.00 3.53
2160 2365 5.593010 CGTTCCCTTGTTAATTTGTTGGAA 58.407 37.500 0.00 0.00 0.00 3.53
2161 2366 6.043411 CGTTCCCTTGTTAATTTGTTGGAAA 58.957 36.000 0.00 0.00 32.84 3.13
2162 2367 6.704050 CGTTCCCTTGTTAATTTGTTGGAAAT 59.296 34.615 0.00 0.00 32.84 2.17
2163 2368 7.225734 CGTTCCCTTGTTAATTTGTTGGAAATT 59.774 33.333 0.00 0.00 32.84 1.82
2164 2369 8.898761 GTTCCCTTGTTAATTTGTTGGAAATTT 58.101 29.630 0.00 0.00 32.84 1.82
2175 2380 9.439500 AATTTGTTGGAAATTTATCTGTCCATG 57.561 29.630 0.00 0.00 39.84 3.66
2176 2381 5.964758 TGTTGGAAATTTATCTGTCCATGC 58.035 37.500 0.00 0.00 39.84 4.06
2198 2403 5.045651 TGCATGGAACCCTATATATGTCCTG 60.046 44.000 0.00 0.00 0.00 3.86
2199 2404 5.431765 CATGGAACCCTATATATGTCCTGC 58.568 45.833 0.00 0.00 0.00 4.85
2200 2405 4.763355 TGGAACCCTATATATGTCCTGCT 58.237 43.478 0.00 0.00 0.00 4.24
2211 2416 0.325933 TGTCCTGCTGTGAGAATGGG 59.674 55.000 0.00 0.00 0.00 4.00
2239 2444 7.865385 GTGCACTTCACAAAATTAATTAGGACA 59.135 33.333 10.32 0.00 44.98 4.02
2240 2445 8.081633 TGCACTTCACAAAATTAATTAGGACAG 58.918 33.333 0.01 0.00 0.00 3.51
2241 2446 8.082242 GCACTTCACAAAATTAATTAGGACAGT 58.918 33.333 0.01 0.00 0.00 3.55
2244 2449 6.919721 TCACAAAATTAATTAGGACAGTGGC 58.080 36.000 0.01 0.00 0.00 5.01
2245 2450 6.719370 TCACAAAATTAATTAGGACAGTGGCT 59.281 34.615 0.01 0.00 0.00 4.75
2246 2451 6.808212 CACAAAATTAATTAGGACAGTGGCTG 59.192 38.462 0.01 0.00 37.52 4.85
2247 2452 6.071391 ACAAAATTAATTAGGACAGTGGCTGG 60.071 38.462 0.01 0.00 35.51 4.85
2248 2453 4.862641 ATTAATTAGGACAGTGGCTGGT 57.137 40.909 0.00 0.00 35.51 4.00
2249 2454 2.496899 AATTAGGACAGTGGCTGGTG 57.503 50.000 0.00 0.00 35.51 4.17
2250 2455 0.035056 ATTAGGACAGTGGCTGGTGC 60.035 55.000 0.00 0.00 35.51 5.01
2251 2456 1.414866 TTAGGACAGTGGCTGGTGCA 61.415 55.000 0.00 0.00 41.91 4.57
2252 2457 2.111999 TAGGACAGTGGCTGGTGCAC 62.112 60.000 8.80 8.80 41.91 4.57
2253 2458 2.980233 GACAGTGGCTGGTGCACC 60.980 66.667 29.67 29.67 41.91 5.01
2254 2459 4.586235 ACAGTGGCTGGTGCACCC 62.586 66.667 32.62 18.16 41.91 4.61
2259 2464 4.684134 GGCTGGTGCACCCCACAT 62.684 66.667 32.62 0.00 46.50 3.21
2260 2465 2.354729 GCTGGTGCACCCCACATA 59.645 61.111 32.62 12.36 46.50 2.29
2261 2466 1.076777 GCTGGTGCACCCCACATAT 60.077 57.895 32.62 0.00 46.50 1.78
2262 2467 1.386525 GCTGGTGCACCCCACATATG 61.387 60.000 32.62 12.87 46.50 1.78
2263 2468 1.379710 TGGTGCACCCCACATATGC 60.380 57.895 32.62 4.38 46.50 3.14
2264 2469 2.480610 GGTGCACCCCACATATGCG 61.481 63.158 26.31 0.00 46.50 4.73
2265 2470 2.828095 TGCACCCCACATATGCGC 60.828 61.111 0.00 0.00 42.44 6.09
2266 2471 2.828095 GCACCCCACATATGCGCA 60.828 61.111 14.96 14.96 0.00 6.09
2267 2472 3.110139 CACCCCACATATGCGCAC 58.890 61.111 14.90 0.00 0.00 5.34
2268 2473 2.124320 ACCCCACATATGCGCACC 60.124 61.111 14.90 0.00 0.00 5.01
2275 2480 0.322456 ACATATGCGCACCCAACACT 60.322 50.000 14.90 0.00 0.00 3.55
2322 2538 5.484173 TGAACTTCGCATAAGCCATTTAG 57.516 39.130 0.00 0.00 37.52 1.85
2328 2544 6.543831 ACTTCGCATAAGCCATTTAGATTCTT 59.456 34.615 0.00 0.00 37.52 2.52
2329 2545 7.715249 ACTTCGCATAAGCCATTTAGATTCTTA 59.285 33.333 0.00 0.00 37.52 2.10
2330 2546 8.621532 TTCGCATAAGCCATTTAGATTCTTAT 57.378 30.769 0.00 0.00 37.52 1.73
2331 2547 8.621532 TCGCATAAGCCATTTAGATTCTTATT 57.378 30.769 0.00 0.00 37.52 1.40
2332 2548 9.066892 TCGCATAAGCCATTTAGATTCTTATTT 57.933 29.630 0.00 0.00 37.52 1.40
2333 2549 9.683069 CGCATAAGCCATTTAGATTCTTATTTT 57.317 29.630 0.00 0.00 37.52 1.82
2401 2617 8.940397 TCCCTCCATCAAAATTAATCTAATCC 57.060 34.615 0.00 0.00 0.00 3.01
2402 2618 7.950124 TCCCTCCATCAAAATTAATCTAATCCC 59.050 37.037 0.00 0.00 0.00 3.85
2403 2619 7.952368 CCCTCCATCAAAATTAATCTAATCCCT 59.048 37.037 0.00 0.00 0.00 4.20
2427 2643 9.593134 CCTACATGATCAGAAATATACTTAGGC 57.407 37.037 0.00 0.00 0.00 3.93
2428 2644 9.295214 CTACATGATCAGAAATATACTTAGGCG 57.705 37.037 0.00 0.00 0.00 5.52
2429 2645 7.671302 ACATGATCAGAAATATACTTAGGCGT 58.329 34.615 0.00 0.00 0.00 5.68
2430 2646 8.803235 ACATGATCAGAAATATACTTAGGCGTA 58.197 33.333 0.00 0.00 0.00 4.42
2431 2647 9.639601 CATGATCAGAAATATACTTAGGCGTAA 57.360 33.333 0.09 0.00 0.00 3.18
2433 2649 9.692749 TGATCAGAAATATACTTAGGCGTAAAG 57.307 33.333 0.00 0.00 0.00 1.85
2487 2873 2.394708 CTCAATCATACTACACCGGCG 58.605 52.381 0.00 0.00 0.00 6.46
2502 2888 1.497722 GGCGCTTTGATATAGCCGC 59.502 57.895 7.64 1.43 38.28 6.53
2505 2891 0.164647 CGCTTTGATATAGCCGCTGC 59.835 55.000 2.16 0.00 35.18 5.25
2592 2978 7.290948 TCATGAGGGTGTGATATACTGAGATTT 59.709 37.037 0.00 0.00 0.00 2.17
2643 3029 7.990541 TGTTCATATTATTGTCAGCATTTGC 57.009 32.000 0.00 0.00 42.49 3.68
2725 3111 3.760151 CCACATGGCTGGTATAATCATGG 59.240 47.826 0.00 0.00 39.39 3.66
2728 3114 5.713389 CACATGGCTGGTATAATCATGGAAT 59.287 40.000 0.00 0.00 39.39 3.01
2981 3369 4.499183 CCTCTGAAATGTGTACTCCACTC 58.501 47.826 0.00 0.00 44.81 3.51
3012 3400 5.868043 TGATCTGTAGTTTTGTGCATCAG 57.132 39.130 0.00 0.00 0.00 2.90
3055 3443 5.704515 AGTTCTTGGATGATCACAGAAACAG 59.295 40.000 0.00 0.00 0.00 3.16
3082 3470 2.036733 GTCTACCACACACCTTGCTGTA 59.963 50.000 0.00 0.00 0.00 2.74
3281 3669 5.658634 AGCACTTAGATGTCATCTACTTCCA 59.341 40.000 20.07 6.55 41.33 3.53
3297 3685 5.924475 ACTTCCACACTTCACTATTTTCG 57.076 39.130 0.00 0.00 0.00 3.46
3324 3720 9.823647 CCTATCATACATATCATTGTCTAACCC 57.176 37.037 0.00 0.00 0.00 4.11
3337 3733 4.237018 TGTCTAACCCTAACCTTGTTCCT 58.763 43.478 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 85 9.974980 TTCTACGCATTATAGAATGTTCATGTA 57.025 29.630 11.51 6.54 43.82 2.29
100 103 5.299148 TGGTTTTAGTAAAGCTTCTACGCA 58.701 37.500 0.00 0.00 41.25 5.24
102 105 8.699283 ACTATGGTTTTAGTAAAGCTTCTACG 57.301 34.615 0.00 0.00 41.25 3.51
267 270 9.716531 TCATTAATTTTTAAATGTGTCCATGCA 57.283 25.926 0.00 0.00 35.16 3.96
268 271 9.971744 GTCATTAATTTTTAAATGTGTCCATGC 57.028 29.630 0.00 0.00 35.16 4.06
292 295 9.959749 TCCTATTAATCGGCATTTAAAAATGTC 57.040 29.630 14.98 12.35 45.77 3.06
296 299 9.589111 GGTTTCCTATTAATCGGCATTTAAAAA 57.411 29.630 1.04 0.00 0.00 1.94
297 300 8.750298 TGGTTTCCTATTAATCGGCATTTAAAA 58.250 29.630 1.04 0.00 0.00 1.52
298 301 8.294954 TGGTTTCCTATTAATCGGCATTTAAA 57.705 30.769 1.04 0.00 0.00 1.52
299 302 7.558444 ACTGGTTTCCTATTAATCGGCATTTAA 59.442 33.333 1.04 0.00 0.00 1.52
300 303 7.057894 ACTGGTTTCCTATTAATCGGCATTTA 58.942 34.615 1.04 0.00 0.00 1.40
301 304 5.891551 ACTGGTTTCCTATTAATCGGCATTT 59.108 36.000 1.04 0.00 0.00 2.32
302 305 5.445964 ACTGGTTTCCTATTAATCGGCATT 58.554 37.500 1.04 0.00 0.00 3.56
303 306 5.048846 ACTGGTTTCCTATTAATCGGCAT 57.951 39.130 1.04 0.00 0.00 4.40
304 307 4.497291 ACTGGTTTCCTATTAATCGGCA 57.503 40.909 1.04 0.00 0.00 5.69
305 308 5.995897 ACATACTGGTTTCCTATTAATCGGC 59.004 40.000 1.04 0.00 0.00 5.54
306 309 7.519970 GCAACATACTGGTTTCCTATTAATCGG 60.520 40.741 0.00 0.00 0.00 4.18
307 310 7.226720 AGCAACATACTGGTTTCCTATTAATCG 59.773 37.037 0.00 0.00 0.00 3.34
308 311 8.451908 AGCAACATACTGGTTTCCTATTAATC 57.548 34.615 0.00 0.00 0.00 1.75
309 312 9.914834 TTAGCAACATACTGGTTTCCTATTAAT 57.085 29.630 0.00 0.00 0.00 1.40
310 313 9.914834 ATTAGCAACATACTGGTTTCCTATTAA 57.085 29.630 0.00 0.00 0.00 1.40
311 314 9.914834 AATTAGCAACATACTGGTTTCCTATTA 57.085 29.630 0.00 0.00 0.00 0.98
312 315 8.823220 AATTAGCAACATACTGGTTTCCTATT 57.177 30.769 0.00 0.00 0.00 1.73
313 316 8.823220 AAATTAGCAACATACTGGTTTCCTAT 57.177 30.769 0.00 0.00 0.00 2.57
314 317 8.107095 AGAAATTAGCAACATACTGGTTTCCTA 58.893 33.333 0.00 0.00 0.00 2.94
315 318 6.948309 AGAAATTAGCAACATACTGGTTTCCT 59.052 34.615 0.00 0.00 0.00 3.36
316 319 7.158099 AGAAATTAGCAACATACTGGTTTCC 57.842 36.000 0.00 0.00 0.00 3.13
317 320 9.556030 GTTAGAAATTAGCAACATACTGGTTTC 57.444 33.333 0.00 0.00 0.00 2.78
318 321 9.297037 AGTTAGAAATTAGCAACATACTGGTTT 57.703 29.630 0.00 0.00 0.00 3.27
319 322 8.863872 AGTTAGAAATTAGCAACATACTGGTT 57.136 30.769 0.00 0.00 0.00 3.67
320 323 9.953565 TTAGTTAGAAATTAGCAACATACTGGT 57.046 29.630 0.00 0.00 0.00 4.00
348 351 9.683069 CAAAAATCAGCAACATACTACTCTTTT 57.317 29.630 0.00 0.00 0.00 2.27
349 352 7.809806 GCAAAAATCAGCAACATACTACTCTTT 59.190 33.333 0.00 0.00 0.00 2.52
350 353 7.308435 GCAAAAATCAGCAACATACTACTCTT 58.692 34.615 0.00 0.00 0.00 2.85
351 354 6.127897 GGCAAAAATCAGCAACATACTACTCT 60.128 38.462 0.00 0.00 0.00 3.24
352 355 6.030228 GGCAAAAATCAGCAACATACTACTC 58.970 40.000 0.00 0.00 0.00 2.59
353 356 5.476599 TGGCAAAAATCAGCAACATACTACT 59.523 36.000 0.00 0.00 0.00 2.57
354 357 5.708948 TGGCAAAAATCAGCAACATACTAC 58.291 37.500 0.00 0.00 0.00 2.73
355 358 5.973899 TGGCAAAAATCAGCAACATACTA 57.026 34.783 0.00 0.00 0.00 1.82
356 359 4.870123 TGGCAAAAATCAGCAACATACT 57.130 36.364 0.00 0.00 0.00 2.12
357 360 5.921004 TTTGGCAAAAATCAGCAACATAC 57.079 34.783 10.83 0.00 0.00 2.39
358 361 5.819379 TGTTTTGGCAAAAATCAGCAACATA 59.181 32.000 25.60 0.00 37.59 2.29
359 362 4.639310 TGTTTTGGCAAAAATCAGCAACAT 59.361 33.333 25.60 0.00 37.59 2.71
360 363 4.005650 TGTTTTGGCAAAAATCAGCAACA 58.994 34.783 25.60 15.08 37.59 3.33
361 364 4.612932 TGTTTTGGCAAAAATCAGCAAC 57.387 36.364 25.60 12.74 37.59 4.17
362 365 4.699257 ACTTGTTTTGGCAAAAATCAGCAA 59.301 33.333 25.60 21.45 37.59 3.91
363 366 4.260170 ACTTGTTTTGGCAAAAATCAGCA 58.740 34.783 25.60 16.26 37.59 4.41
364 367 4.880886 ACTTGTTTTGGCAAAAATCAGC 57.119 36.364 25.60 13.96 37.59 4.26
365 368 8.450180 AGTAAAACTTGTTTTGGCAAAAATCAG 58.550 29.630 25.60 21.34 37.59 2.90
366 369 8.329203 AGTAAAACTTGTTTTGGCAAAAATCA 57.671 26.923 25.60 17.62 37.59 2.57
373 376 9.660180 AGAAAAATAGTAAAACTTGTTTTGGCA 57.340 25.926 18.33 6.31 30.56 4.92
379 382 9.946165 CGAGGAAGAAAAATAGTAAAACTTGTT 57.054 29.630 0.00 0.00 0.00 2.83
380 383 8.074370 GCGAGGAAGAAAAATAGTAAAACTTGT 58.926 33.333 0.00 0.00 0.00 3.16
381 384 8.073768 TGCGAGGAAGAAAAATAGTAAAACTTG 58.926 33.333 0.00 0.00 0.00 3.16
382 385 8.161699 TGCGAGGAAGAAAAATAGTAAAACTT 57.838 30.769 0.00 0.00 0.00 2.66
383 386 7.739498 TGCGAGGAAGAAAAATAGTAAAACT 57.261 32.000 0.00 0.00 0.00 2.66
384 387 8.791355 TTTGCGAGGAAGAAAAATAGTAAAAC 57.209 30.769 0.00 0.00 0.00 2.43
385 388 9.974980 AATTTGCGAGGAAGAAAAATAGTAAAA 57.025 25.926 0.00 0.00 0.00 1.52
386 389 9.974980 AAATTTGCGAGGAAGAAAAATAGTAAA 57.025 25.926 0.00 0.00 0.00 2.01
387 390 9.974980 AAAATTTGCGAGGAAGAAAAATAGTAA 57.025 25.926 0.00 0.00 0.00 2.24
388 391 9.974980 AAAAATTTGCGAGGAAGAAAAATAGTA 57.025 25.926 0.00 0.00 0.00 1.82
389 392 8.887036 AAAAATTTGCGAGGAAGAAAAATAGT 57.113 26.923 0.00 0.00 0.00 2.12
473 476 5.778862 ACACAACCCCTCAAAATAAAATCG 58.221 37.500 0.00 0.00 0.00 3.34
474 477 8.445275 AAAACACAACCCCTCAAAATAAAATC 57.555 30.769 0.00 0.00 0.00 2.17
475 478 8.681806 CAAAAACACAACCCCTCAAAATAAAAT 58.318 29.630 0.00 0.00 0.00 1.82
476 479 7.665974 ACAAAAACACAACCCCTCAAAATAAAA 59.334 29.630 0.00 0.00 0.00 1.52
477 480 7.168905 ACAAAAACACAACCCCTCAAAATAAA 58.831 30.769 0.00 0.00 0.00 1.40
478 481 6.712276 ACAAAAACACAACCCCTCAAAATAA 58.288 32.000 0.00 0.00 0.00 1.40
479 482 6.301169 ACAAAAACACAACCCCTCAAAATA 57.699 33.333 0.00 0.00 0.00 1.40
480 483 5.172687 ACAAAAACACAACCCCTCAAAAT 57.827 34.783 0.00 0.00 0.00 1.82
481 484 4.625607 ACAAAAACACAACCCCTCAAAA 57.374 36.364 0.00 0.00 0.00 2.44
482 485 5.017490 TCTACAAAAACACAACCCCTCAAA 58.983 37.500 0.00 0.00 0.00 2.69
483 486 4.399934 GTCTACAAAAACACAACCCCTCAA 59.600 41.667 0.00 0.00 0.00 3.02
484 487 3.949113 GTCTACAAAAACACAACCCCTCA 59.051 43.478 0.00 0.00 0.00 3.86
485 488 3.002965 CGTCTACAAAAACACAACCCCTC 59.997 47.826 0.00 0.00 0.00 4.30
486 489 2.946990 CGTCTACAAAAACACAACCCCT 59.053 45.455 0.00 0.00 0.00 4.79
487 490 2.033675 CCGTCTACAAAAACACAACCCC 59.966 50.000 0.00 0.00 0.00 4.95
488 491 2.944349 TCCGTCTACAAAAACACAACCC 59.056 45.455 0.00 0.00 0.00 4.11
489 492 4.619437 TTCCGTCTACAAAAACACAACC 57.381 40.909 0.00 0.00 0.00 3.77
490 493 7.514573 AATTTTCCGTCTACAAAAACACAAC 57.485 32.000 0.00 0.00 0.00 3.32
491 494 9.239002 CATAATTTTCCGTCTACAAAAACACAA 57.761 29.630 0.00 0.00 0.00 3.33
492 495 8.622157 TCATAATTTTCCGTCTACAAAAACACA 58.378 29.630 0.00 0.00 0.00 3.72
493 496 9.620660 ATCATAATTTTCCGTCTACAAAAACAC 57.379 29.630 0.00 0.00 0.00 3.32
506 509 8.187480 TCCACACAATACAATCATAATTTTCCG 58.813 33.333 0.00 0.00 0.00 4.30
518 521 9.912634 CAAATAAGAAACTCCACACAATACAAT 57.087 29.630 0.00 0.00 0.00 2.71
523 526 7.781324 ATCCAAATAAGAAACTCCACACAAT 57.219 32.000 0.00 0.00 0.00 2.71
549 552 4.993584 CAGAAATAGGAACAGGATGGATCG 59.006 45.833 0.00 0.00 43.62 3.69
566 569 1.145738 AGGGGCAACTCACACAGAAAT 59.854 47.619 0.00 0.00 42.85 2.17
580 583 0.244450 CACGTACGTAGAAAGGGGCA 59.756 55.000 22.34 0.00 0.00 5.36
597 600 7.444487 ACCTAACACAGAAAATAGGAAACTCAC 59.556 37.037 4.78 0.00 43.67 3.51
653 656 2.227149 AGTATCGGCCGTTTTTCCAAAC 59.773 45.455 27.15 9.93 39.24 2.93
657 660 3.127081 GAAAGTATCGGCCGTTTTTCC 57.873 47.619 27.15 8.39 0.00 3.13
684 687 1.176619 CGGCCGTTCTTCCCCTTTTT 61.177 55.000 19.50 0.00 0.00 1.94
685 688 1.602605 CGGCCGTTCTTCCCCTTTT 60.603 57.895 19.50 0.00 0.00 2.27
686 689 1.848886 ATCGGCCGTTCTTCCCCTTT 61.849 55.000 27.15 0.00 0.00 3.11
687 690 0.979187 TATCGGCCGTTCTTCCCCTT 60.979 55.000 27.15 1.02 0.00 3.95
688 691 1.382146 TATCGGCCGTTCTTCCCCT 60.382 57.895 27.15 2.40 0.00 4.79
689 692 1.227468 GTATCGGCCGTTCTTCCCC 60.227 63.158 27.15 1.84 0.00 4.81
690 693 1.590792 CGTATCGGCCGTTCTTCCC 60.591 63.158 27.15 6.35 0.00 3.97
728 734 9.309516 CTCTAACGTACTCTTGCCATTTTATAA 57.690 33.333 0.00 0.00 0.00 0.98
799 805 2.495084 GAAGAAAGTTCGTCAAGCCCT 58.505 47.619 2.60 0.00 36.03 5.19
802 808 1.398578 GGCGAAGAAAGTTCGTCAAGC 60.399 52.381 6.87 3.87 44.91 4.01
804 810 0.856641 CGGCGAAGAAAGTTCGTCAA 59.143 50.000 0.00 0.00 45.74 3.18
891 897 7.644157 GCCTATAAATTGGACGAGATTCAAAAC 59.356 37.037 0.00 0.00 0.00 2.43
904 914 0.887387 GCGGCGGCCTATAAATTGGA 60.887 55.000 18.34 0.00 0.00 3.53
978 996 1.425267 CTTCTCTCGCTCTCGCTCGA 61.425 60.000 0.00 0.00 35.26 4.04
983 1001 2.458951 CCATTTCTTCTCTCGCTCTCG 58.541 52.381 0.00 0.00 0.00 4.04
1110 1128 2.987125 GAGAACTTAGGGCCGGCA 59.013 61.111 30.85 4.32 0.00 5.69
1119 1137 1.404391 GATCTGACCGGCGAGAACTTA 59.596 52.381 9.30 0.00 0.00 2.24
1123 1141 2.771639 CCGATCTGACCGGCGAGAA 61.772 63.158 9.30 0.00 40.54 2.87
1124 1142 3.209812 CCGATCTGACCGGCGAGA 61.210 66.667 9.30 3.28 40.54 4.04
1139 1157 1.151668 CTTCACAGACTTGGCTTCCG 58.848 55.000 0.00 0.00 0.00 4.30
1143 1161 1.302033 CGGCTTCACAGACTTGGCT 60.302 57.895 0.00 0.00 0.00 4.75
1259 1380 2.868899 AGGCAAGAAGAGAAAAGTGGG 58.131 47.619 0.00 0.00 0.00 4.61
1268 1389 4.330250 TGAATGAAGGAAGGCAAGAAGAG 58.670 43.478 0.00 0.00 0.00 2.85
1270 1391 5.184479 TGAATGAATGAAGGAAGGCAAGAAG 59.816 40.000 0.00 0.00 0.00 2.85
1272 1393 4.665451 TGAATGAATGAAGGAAGGCAAGA 58.335 39.130 0.00 0.00 0.00 3.02
1274 1395 5.481122 TGAATGAATGAATGAAGGAAGGCAA 59.519 36.000 0.00 0.00 0.00 4.52
1275 1396 5.018149 TGAATGAATGAATGAAGGAAGGCA 58.982 37.500 0.00 0.00 0.00 4.75
1276 1397 5.126707 ACTGAATGAATGAATGAAGGAAGGC 59.873 40.000 0.00 0.00 0.00 4.35
1277 1398 6.770746 ACTGAATGAATGAATGAAGGAAGG 57.229 37.500 0.00 0.00 0.00 3.46
1278 1399 8.954350 AGTAACTGAATGAATGAATGAAGGAAG 58.046 33.333 0.00 0.00 0.00 3.46
1279 1400 8.868522 AGTAACTGAATGAATGAATGAAGGAA 57.131 30.769 0.00 0.00 0.00 3.36
1280 1401 9.958180 TTAGTAACTGAATGAATGAATGAAGGA 57.042 29.630 0.00 0.00 0.00 3.36
1281 1402 9.994432 GTTAGTAACTGAATGAATGAATGAAGG 57.006 33.333 5.75 0.00 0.00 3.46
1282 1403 9.994432 GGTTAGTAACTGAATGAATGAATGAAG 57.006 33.333 12.65 0.00 0.00 3.02
1283 1404 8.664798 CGGTTAGTAACTGAATGAATGAATGAA 58.335 33.333 15.64 0.00 40.26 2.57
1284 1405 8.038351 TCGGTTAGTAACTGAATGAATGAATGA 58.962 33.333 20.03 0.00 43.50 2.57
1285 1406 8.196802 TCGGTTAGTAACTGAATGAATGAATG 57.803 34.615 20.03 0.00 43.50 2.67
1299 1420 3.304293 GCATTGTACGGTCGGTTAGTAAC 59.696 47.826 4.32 4.32 0.00 2.50
1307 1428 1.651987 AAGATGCATTGTACGGTCGG 58.348 50.000 0.00 0.00 0.00 4.79
1333 1454 6.295067 CCGGTGGTAATCCTTCTTTTCATTTT 60.295 38.462 0.00 0.00 34.23 1.82
1334 1455 5.185056 CCGGTGGTAATCCTTCTTTTCATTT 59.815 40.000 0.00 0.00 34.23 2.32
1335 1456 4.705023 CCGGTGGTAATCCTTCTTTTCATT 59.295 41.667 0.00 0.00 34.23 2.57
1336 1457 4.270008 CCGGTGGTAATCCTTCTTTTCAT 58.730 43.478 0.00 0.00 34.23 2.57
1337 1458 3.681593 CCGGTGGTAATCCTTCTTTTCA 58.318 45.455 0.00 0.00 34.23 2.69
1338 1459 2.422479 GCCGGTGGTAATCCTTCTTTTC 59.578 50.000 1.90 0.00 34.23 2.29
1339 1460 2.443416 GCCGGTGGTAATCCTTCTTTT 58.557 47.619 1.90 0.00 34.23 2.27
1340 1461 1.340697 GGCCGGTGGTAATCCTTCTTT 60.341 52.381 1.90 0.00 34.23 2.52
1341 1462 0.255033 GGCCGGTGGTAATCCTTCTT 59.745 55.000 1.90 0.00 34.23 2.52
1342 1463 0.620700 AGGCCGGTGGTAATCCTTCT 60.621 55.000 1.90 0.00 34.23 2.85
1343 1464 0.179054 GAGGCCGGTGGTAATCCTTC 60.179 60.000 1.90 0.00 34.23 3.46
1344 1465 0.620700 AGAGGCCGGTGGTAATCCTT 60.621 55.000 1.90 0.00 34.23 3.36
1345 1466 1.003051 AGAGGCCGGTGGTAATCCT 59.997 57.895 1.90 0.00 34.23 3.24
1346 1467 1.146263 CAGAGGCCGGTGGTAATCC 59.854 63.158 1.90 0.00 0.00 3.01
1347 1468 1.523938 GCAGAGGCCGGTGGTAATC 60.524 63.158 1.90 0.00 0.00 1.75
1348 1469 1.635817 ATGCAGAGGCCGGTGGTAAT 61.636 55.000 1.90 0.00 40.13 1.89
1349 1470 2.252072 GATGCAGAGGCCGGTGGTAA 62.252 60.000 1.90 0.00 40.13 2.85
1350 1471 2.687200 ATGCAGAGGCCGGTGGTA 60.687 61.111 1.90 0.00 40.13 3.25
1351 1472 4.101448 GATGCAGAGGCCGGTGGT 62.101 66.667 1.90 0.00 40.13 4.16
1352 1473 4.100084 TGATGCAGAGGCCGGTGG 62.100 66.667 1.90 0.00 40.13 4.61
1353 1474 2.513204 CTGATGCAGAGGCCGGTG 60.513 66.667 1.90 0.00 40.13 4.94
1354 1475 2.293318 TTCTGATGCAGAGGCCGGT 61.293 57.895 1.90 0.00 41.75 5.28
1355 1476 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
1356 1477 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
1357 1478 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
1358 1479 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
1366 1487 0.933097 GACGCATGCATCGTTCTGAT 59.067 50.000 19.57 2.48 40.59 2.90
1367 1488 1.083806 GGACGCATGCATCGTTCTGA 61.084 55.000 19.57 0.00 40.59 3.27
1368 1489 1.349627 GGACGCATGCATCGTTCTG 59.650 57.895 19.57 0.50 40.59 3.02
1369 1490 0.462581 ATGGACGCATGCATCGTTCT 60.463 50.000 19.57 11.12 40.59 3.01
1370 1491 0.041839 GATGGACGCATGCATCGTTC 60.042 55.000 19.57 18.86 42.88 3.95
1371 1492 2.016961 GATGGACGCATGCATCGTT 58.983 52.632 19.57 2.28 42.88 3.85
1372 1493 3.723172 GATGGACGCATGCATCGT 58.277 55.556 19.57 19.41 42.88 3.73
1375 1496 6.389830 TTTTAATAAGATGGACGCATGCAT 57.610 33.333 19.57 0.36 40.05 3.96
1376 1497 5.826601 TTTTAATAAGATGGACGCATGCA 57.173 34.783 19.57 0.00 0.00 3.96
1377 1498 6.197096 CACTTTTTAATAAGATGGACGCATGC 59.803 38.462 7.91 7.91 0.00 4.06
1378 1499 6.197096 GCACTTTTTAATAAGATGGACGCATG 59.803 38.462 11.97 0.00 0.00 4.06
1379 1500 6.265577 GCACTTTTTAATAAGATGGACGCAT 58.734 36.000 11.97 0.00 0.00 4.73
1380 1501 5.392595 GGCACTTTTTAATAAGATGGACGCA 60.393 40.000 11.97 0.00 0.00 5.24
1381 1502 5.034797 GGCACTTTTTAATAAGATGGACGC 58.965 41.667 11.97 5.12 0.00 5.19
1382 1503 6.189677 TGGCACTTTTTAATAAGATGGACG 57.810 37.500 11.97 0.00 0.00 4.79
1383 1504 8.250332 TGATTGGCACTTTTTAATAAGATGGAC 58.750 33.333 11.97 4.70 0.00 4.02
1384 1505 8.359875 TGATTGGCACTTTTTAATAAGATGGA 57.640 30.769 11.97 0.00 0.00 3.41
1385 1506 9.434420 TTTGATTGGCACTTTTTAATAAGATGG 57.566 29.630 11.97 3.45 0.00 3.51
1388 1509 8.973378 CGTTTTGATTGGCACTTTTTAATAAGA 58.027 29.630 11.97 0.00 0.00 2.10
1389 1510 8.973378 TCGTTTTGATTGGCACTTTTTAATAAG 58.027 29.630 4.33 4.33 0.00 1.73
1390 1511 8.873215 TCGTTTTGATTGGCACTTTTTAATAA 57.127 26.923 0.00 0.00 0.00 1.40
1391 1512 8.873215 TTCGTTTTGATTGGCACTTTTTAATA 57.127 26.923 0.00 0.00 0.00 0.98
1392 1513 7.494298 ACTTCGTTTTGATTGGCACTTTTTAAT 59.506 29.630 0.00 0.00 0.00 1.40
1393 1514 6.814146 ACTTCGTTTTGATTGGCACTTTTTAA 59.186 30.769 0.00 0.00 0.00 1.52
1394 1515 6.334202 ACTTCGTTTTGATTGGCACTTTTTA 58.666 32.000 0.00 0.00 0.00 1.52
1395 1516 5.175127 ACTTCGTTTTGATTGGCACTTTTT 58.825 33.333 0.00 0.00 0.00 1.94
1396 1517 4.754322 ACTTCGTTTTGATTGGCACTTTT 58.246 34.783 0.00 0.00 0.00 2.27
1397 1518 4.097892 AGACTTCGTTTTGATTGGCACTTT 59.902 37.500 0.00 0.00 0.00 2.66
1398 1519 3.632145 AGACTTCGTTTTGATTGGCACTT 59.368 39.130 0.00 0.00 0.00 3.16
1399 1520 3.003689 CAGACTTCGTTTTGATTGGCACT 59.996 43.478 0.00 0.00 0.00 4.40
1400 1521 3.300009 CAGACTTCGTTTTGATTGGCAC 58.700 45.455 0.00 0.00 0.00 5.01
1401 1522 2.287547 GCAGACTTCGTTTTGATTGGCA 60.288 45.455 0.00 0.00 0.00 4.92
1402 1523 2.287547 TGCAGACTTCGTTTTGATTGGC 60.288 45.455 0.00 0.00 0.00 4.52
1403 1524 3.624326 TGCAGACTTCGTTTTGATTGG 57.376 42.857 0.00 0.00 0.00 3.16
1404 1525 5.686841 TGAATTGCAGACTTCGTTTTGATTG 59.313 36.000 0.00 0.00 0.00 2.67
1405 1526 5.830912 TGAATTGCAGACTTCGTTTTGATT 58.169 33.333 0.00 0.00 0.00 2.57
1406 1527 5.437289 TGAATTGCAGACTTCGTTTTGAT 57.563 34.783 0.00 0.00 0.00 2.57
1407 1528 4.891627 TGAATTGCAGACTTCGTTTTGA 57.108 36.364 0.00 0.00 0.00 2.69
1420 1541 1.078709 GCGAGCTGTACTGAATTGCA 58.921 50.000 3.61 0.00 0.00 4.08
1421 1542 1.078709 TGCGAGCTGTACTGAATTGC 58.921 50.000 3.61 7.20 0.00 3.56
1422 1543 3.811722 TTTGCGAGCTGTACTGAATTG 57.188 42.857 3.61 0.00 0.00 2.32
1423 1544 3.753272 ACATTTGCGAGCTGTACTGAATT 59.247 39.130 3.61 0.00 0.00 2.17
1424 1545 3.338249 ACATTTGCGAGCTGTACTGAAT 58.662 40.909 3.61 0.00 0.00 2.57
1425 1546 2.766313 ACATTTGCGAGCTGTACTGAA 58.234 42.857 3.61 0.00 0.00 3.02
1426 1547 2.455674 ACATTTGCGAGCTGTACTGA 57.544 45.000 3.61 0.00 0.00 3.41
1427 1548 4.864916 ATTACATTTGCGAGCTGTACTG 57.135 40.909 0.00 0.00 0.00 2.74
1428 1549 6.594159 AGTTAATTACATTTGCGAGCTGTACT 59.406 34.615 0.00 0.00 0.00 2.73
1429 1550 6.772078 AGTTAATTACATTTGCGAGCTGTAC 58.228 36.000 0.00 0.00 0.00 2.90
1430 1551 6.978343 AGTTAATTACATTTGCGAGCTGTA 57.022 33.333 0.00 0.00 0.00 2.74
1431 1552 5.880054 AGTTAATTACATTTGCGAGCTGT 57.120 34.783 0.00 0.00 0.00 4.40
1432 1553 5.512788 CCAAGTTAATTACATTTGCGAGCTG 59.487 40.000 0.00 0.00 0.00 4.24
1433 1554 5.183140 ACCAAGTTAATTACATTTGCGAGCT 59.817 36.000 0.00 0.00 0.00 4.09
1434 1555 5.286082 CACCAAGTTAATTACATTTGCGAGC 59.714 40.000 0.00 0.00 0.00 5.03
1435 1556 6.378582 ACACCAAGTTAATTACATTTGCGAG 58.621 36.000 0.00 0.00 0.00 5.03
1436 1557 6.320494 ACACCAAGTTAATTACATTTGCGA 57.680 33.333 0.00 0.00 0.00 5.10
1437 1558 8.582930 CATTACACCAAGTTAATTACATTTGCG 58.417 33.333 0.00 0.00 0.00 4.85
1438 1559 9.418045 ACATTACACCAAGTTAATTACATTTGC 57.582 29.630 0.00 0.00 0.00 3.68
1529 1665 1.808411 TGTTTCGGTTCATGGAGAGC 58.192 50.000 0.00 0.00 0.00 4.09
1539 1675 5.295950 TGCATCAAATCAAATGTTTCGGTT 58.704 33.333 0.00 0.00 0.00 4.44
1629 1780 7.348080 ACTCGATTAATTATGTCACTCCTCA 57.652 36.000 0.00 0.00 0.00 3.86
1654 1805 2.581354 GCCTCATCTGTGGCGTCT 59.419 61.111 7.45 0.00 43.57 4.18
1677 1828 1.079612 GCTTTGGAGTTGGCATGGC 60.080 57.895 13.29 13.29 0.00 4.40
1791 1942 1.986575 GAATGCAAGAGTGAGCGGGC 61.987 60.000 0.00 0.00 0.00 6.13
1795 1951 2.810274 TGAAGTGAATGCAAGAGTGAGC 59.190 45.455 0.00 0.00 0.00 4.26
1828 1988 6.347725 CCGAGACAGTTTGGTTTCAATAAGAG 60.348 42.308 0.00 0.00 32.28 2.85
1829 1989 5.468746 CCGAGACAGTTTGGTTTCAATAAGA 59.531 40.000 0.00 0.00 32.28 2.10
1832 1992 4.710324 ACCGAGACAGTTTGGTTTCAATA 58.290 39.130 0.00 0.00 30.26 1.90
1833 1993 3.551846 ACCGAGACAGTTTGGTTTCAAT 58.448 40.909 0.00 0.00 30.26 2.57
1834 1994 2.940410 GACCGAGACAGTTTGGTTTCAA 59.060 45.455 0.00 0.00 34.89 2.69
1835 1995 2.557317 GACCGAGACAGTTTGGTTTCA 58.443 47.619 0.00 0.00 34.89 2.69
1836 1996 1.525619 CGACCGAGACAGTTTGGTTTC 59.474 52.381 0.00 0.00 34.89 2.78
1837 1997 1.578583 CGACCGAGACAGTTTGGTTT 58.421 50.000 0.00 0.00 34.89 3.27
1838 1998 0.878961 GCGACCGAGACAGTTTGGTT 60.879 55.000 0.00 0.00 34.89 3.67
1839 1999 1.300697 GCGACCGAGACAGTTTGGT 60.301 57.895 0.00 0.00 37.56 3.67
1840 2000 1.006102 AGCGACCGAGACAGTTTGG 60.006 57.895 0.00 0.00 0.00 3.28
1841 2001 1.337817 CGAGCGACCGAGACAGTTTG 61.338 60.000 0.00 0.00 0.00 2.93
1847 2007 3.501548 AGAGCGAGCGACCGAGAC 61.502 66.667 1.05 0.00 0.00 3.36
1874 2064 0.609151 TGCAAATGAATGGCCCACAG 59.391 50.000 0.00 0.00 0.00 3.66
1881 2071 5.345702 CCTGTTAGTGATGCAAATGAATGG 58.654 41.667 0.00 0.00 0.00 3.16
1886 2088 2.159198 GGCCCTGTTAGTGATGCAAATG 60.159 50.000 0.00 0.00 0.00 2.32
1892 2094 0.181350 GGGAGGCCCTGTTAGTGATG 59.819 60.000 0.00 0.00 41.34 3.07
1895 2097 2.584608 CGGGAGGCCCTGTTAGTG 59.415 66.667 0.00 0.00 42.67 2.74
2113 2315 8.677300 ACGCATAACAAATAAGAAATCTCACAT 58.323 29.630 0.00 0.00 0.00 3.21
2114 2316 8.039603 ACGCATAACAAATAAGAAATCTCACA 57.960 30.769 0.00 0.00 0.00 3.58
2115 2317 8.895932 AACGCATAACAAATAAGAAATCTCAC 57.104 30.769 0.00 0.00 0.00 3.51
2116 2318 8.181573 GGAACGCATAACAAATAAGAAATCTCA 58.818 33.333 0.00 0.00 0.00 3.27
2155 2360 6.575267 CATGCATGGACAGATAAATTTCCAA 58.425 36.000 19.40 0.00 41.48 3.53
2156 2361 6.151663 CATGCATGGACAGATAAATTTCCA 57.848 37.500 19.40 0.00 42.34 3.53
2172 2377 5.824624 GGACATATATAGGGTTCCATGCATG 59.175 44.000 20.19 20.19 0.00 4.06
2173 2378 5.733154 AGGACATATATAGGGTTCCATGCAT 59.267 40.000 0.00 0.00 0.00 3.96
2174 2379 5.045651 CAGGACATATATAGGGTTCCATGCA 60.046 44.000 6.77 0.00 0.00 3.96
2175 2380 5.431765 CAGGACATATATAGGGTTCCATGC 58.568 45.833 6.77 0.00 0.00 4.06
2176 2381 5.190528 AGCAGGACATATATAGGGTTCCATG 59.809 44.000 6.77 0.00 0.00 3.66
2198 2403 0.890542 TGCACACCCATTCTCACAGC 60.891 55.000 0.00 0.00 0.00 4.40
2199 2404 0.877071 GTGCACACCCATTCTCACAG 59.123 55.000 13.17 0.00 0.00 3.66
2200 2405 0.473755 AGTGCACACCCATTCTCACA 59.526 50.000 21.04 0.00 0.00 3.58
2225 2430 5.418840 CACCAGCCACTGTCCTAATTAATTT 59.581 40.000 5.91 0.00 0.00 1.82
2231 2436 0.035056 GCACCAGCCACTGTCCTAAT 60.035 55.000 0.00 0.00 33.58 1.73
2232 2437 1.374947 GCACCAGCCACTGTCCTAA 59.625 57.895 0.00 0.00 33.58 2.69
2233 2438 1.841103 TGCACCAGCCACTGTCCTA 60.841 57.895 0.00 0.00 41.13 2.94
2234 2439 3.170672 TGCACCAGCCACTGTCCT 61.171 61.111 0.00 0.00 41.13 3.85
2235 2440 2.980233 GTGCACCAGCCACTGTCC 60.980 66.667 5.22 0.00 41.13 4.02
2236 2441 2.980233 GGTGCACCAGCCACTGTC 60.980 66.667 31.23 0.00 41.13 3.51
2244 2449 1.386525 GCATATGTGGGGTGCACCAG 61.387 60.000 35.78 15.46 42.20 4.00
2245 2450 1.379710 GCATATGTGGGGTGCACCA 60.380 57.895 35.78 17.29 42.91 4.17
2246 2451 2.480610 CGCATATGTGGGGTGCACC 61.481 63.158 28.57 28.57 38.75 5.01
2247 2452 3.110139 CGCATATGTGGGGTGCAC 58.890 61.111 8.80 8.80 38.75 4.57
2248 2453 2.828095 GCGCATATGTGGGGTGCA 60.828 61.111 17.63 0.00 38.75 4.57
2249 2454 2.828095 TGCGCATATGTGGGGTGC 60.828 61.111 17.63 3.63 38.61 5.01
2250 2455 2.480610 GGTGCGCATATGTGGGGTG 61.481 63.158 15.91 0.00 38.61 4.61
2251 2456 2.124320 GGTGCGCATATGTGGGGT 60.124 61.111 15.91 0.00 38.61 4.95
2252 2457 2.906897 GGGTGCGCATATGTGGGG 60.907 66.667 15.91 0.23 38.61 4.96
2253 2458 1.752310 TTGGGTGCGCATATGTGGG 60.752 57.895 15.91 1.88 40.94 4.61
2254 2459 1.311651 TGTTGGGTGCGCATATGTGG 61.312 55.000 15.91 5.09 0.00 4.17
2255 2460 0.179166 GTGTTGGGTGCGCATATGTG 60.179 55.000 15.91 12.04 0.00 3.21
2256 2461 0.322456 AGTGTTGGGTGCGCATATGT 60.322 50.000 15.91 0.00 0.00 2.29
2257 2462 0.810648 AAGTGTTGGGTGCGCATATG 59.189 50.000 15.91 0.00 0.00 1.78
2258 2463 1.472480 GAAAGTGTTGGGTGCGCATAT 59.528 47.619 15.91 0.00 0.00 1.78
2259 2464 0.878416 GAAAGTGTTGGGTGCGCATA 59.122 50.000 15.91 0.00 0.00 3.14
2260 2465 1.106351 TGAAAGTGTTGGGTGCGCAT 61.106 50.000 15.91 0.00 0.00 4.73
2261 2466 1.106351 ATGAAAGTGTTGGGTGCGCA 61.106 50.000 5.66 5.66 0.00 6.09
2262 2467 0.387239 GATGAAAGTGTTGGGTGCGC 60.387 55.000 0.00 0.00 0.00 6.09
2263 2468 0.950836 TGATGAAAGTGTTGGGTGCG 59.049 50.000 0.00 0.00 0.00 5.34
2264 2469 2.821969 AGATGATGAAAGTGTTGGGTGC 59.178 45.455 0.00 0.00 0.00 5.01
2265 2470 6.764308 AATAGATGATGAAAGTGTTGGGTG 57.236 37.500 0.00 0.00 0.00 4.61
2266 2471 9.479549 AAATAATAGATGATGAAAGTGTTGGGT 57.520 29.630 0.00 0.00 0.00 4.51
2304 2509 6.551385 AGAATCTAAATGGCTTATGCGAAG 57.449 37.500 0.00 0.00 40.82 3.79
2375 2591 9.367160 GGATTAGATTAATTTTGATGGAGGGAA 57.633 33.333 0.00 0.00 0.00 3.97
2376 2592 7.950124 GGGATTAGATTAATTTTGATGGAGGGA 59.050 37.037 0.00 0.00 0.00 4.20
2377 2593 7.952368 AGGGATTAGATTAATTTTGATGGAGGG 59.048 37.037 0.00 0.00 0.00 4.30
2378 2594 8.946797 AGGGATTAGATTAATTTTGATGGAGG 57.053 34.615 0.00 0.00 0.00 4.30
2401 2617 9.593134 GCCTAAGTATATTTCTGATCATGTAGG 57.407 37.037 0.00 0.00 0.00 3.18
2402 2618 9.295214 CGCCTAAGTATATTTCTGATCATGTAG 57.705 37.037 0.00 0.00 0.00 2.74
2403 2619 8.803235 ACGCCTAAGTATATTTCTGATCATGTA 58.197 33.333 0.00 0.00 0.00 2.29
2404 2620 7.671302 ACGCCTAAGTATATTTCTGATCATGT 58.329 34.615 0.00 0.00 0.00 3.21
2405 2621 9.639601 TTACGCCTAAGTATATTTCTGATCATG 57.360 33.333 0.00 0.00 0.00 3.07
2407 2623 9.692749 CTTTACGCCTAAGTATATTTCTGATCA 57.307 33.333 0.00 0.00 0.00 2.92
2408 2624 8.648968 GCTTTACGCCTAAGTATATTTCTGATC 58.351 37.037 0.00 0.00 0.00 2.92
2409 2625 8.535690 GCTTTACGCCTAAGTATATTTCTGAT 57.464 34.615 0.00 0.00 0.00 2.90
2410 2626 7.941795 GCTTTACGCCTAAGTATATTTCTGA 57.058 36.000 0.00 0.00 0.00 3.27
2426 2642 2.502213 ACTTTGTTTGGGCTTTACGC 57.498 45.000 0.00 0.00 38.13 4.42
2427 2643 9.843334 TTTATAATACTTTGTTTGGGCTTTACG 57.157 29.630 0.00 0.00 0.00 3.18
2465 2851 2.483013 GCCGGTGTAGTATGATTGAGCA 60.483 50.000 1.90 0.00 0.00 4.26
2477 2863 1.865865 ATATCAAAGCGCCGGTGTAG 58.134 50.000 17.91 4.39 0.00 2.74
2502 2888 5.061853 AGACCTGCATCATTTACATAGCAG 58.938 41.667 0.00 0.00 46.55 4.24
2505 2891 8.613060 AATGTAGACCTGCATCATTTACATAG 57.387 34.615 1.24 0.00 34.83 2.23
2592 2978 1.407299 CCGCTCCCATGTGAATCTTCA 60.407 52.381 0.00 0.00 34.20 3.02
2722 3108 7.645058 AATCATACGGAAACAGAAATTCCAT 57.355 32.000 6.17 0.00 45.44 3.41
2725 3111 7.201435 GGCAAAATCATACGGAAACAGAAATTC 60.201 37.037 0.00 0.00 0.00 2.17
2728 3114 5.465935 GGCAAAATCATACGGAAACAGAAA 58.534 37.500 0.00 0.00 0.00 2.52
2774 3160 5.351233 TTCATGTTTACAACTAACCGCAG 57.649 39.130 0.00 0.00 0.00 5.18
2778 3164 9.959749 TTGATCTTTTCATGTTTACAACTAACC 57.040 29.630 0.00 0.00 33.34 2.85
2810 3196 9.112725 AGTTTTGCAGAAATGAAAATTTTAGCT 57.887 25.926 2.75 0.00 0.00 3.32
2981 3369 7.587757 GCACAAAACTACAGATCAACTTGTAAG 59.412 37.037 0.00 0.00 0.00 2.34
3055 3443 4.617762 GCAAGGTGTGTGGTAGACTAGTAC 60.618 50.000 0.00 0.00 0.00 2.73
3082 3470 9.798994 GTCTTATCATTCTTTGAATCTGCAAAT 57.201 29.630 0.00 0.00 38.03 2.32
3281 3669 5.730550 TGATAGGCGAAAATAGTGAAGTGT 58.269 37.500 0.00 0.00 0.00 3.55
3297 3685 9.319143 GGTTAGACAATGATATGTATGATAGGC 57.681 37.037 0.00 0.00 32.57 3.93
3324 3720 7.342769 ACTTGGTAAAAAGGAACAAGGTTAG 57.657 36.000 5.50 0.00 41.98 2.34
3363 3761 7.611855 CCAATTCCTTCAAGTAGACCTAATTGT 59.388 37.037 14.36 0.00 40.67 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.