Multiple sequence alignment - TraesCS3D01G531300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G531300 chr3D 100.000 2556 0 0 1 2556 607378653 607381208 0.000000e+00 4721.0
1 TraesCS3D01G531300 chr3D 80.141 992 149 30 607 1576 607092399 607091434 0.000000e+00 697.0
2 TraesCS3D01G531300 chr3A 90.781 1421 107 14 570 1975 739950357 739951768 0.000000e+00 1877.0
3 TraesCS3D01G531300 chr3A 83.994 631 44 11 1966 2556 739954940 739955553 1.030000e-153 553.0
4 TraesCS3D01G531300 chr3A 86.835 357 36 6 228 574 739949612 739949967 3.080000e-104 388.0
5 TraesCS3D01G531300 chr3A 92.623 122 6 3 108 227 739949393 739949513 3.380000e-39 172.0
6 TraesCS3D01G531300 chr3A 85.227 176 15 7 1762 1927 272770098 272770272 1.220000e-38 171.0
7 TraesCS3D01G531300 chr3A 79.724 217 37 3 1292 1508 739560527 739560318 1.580000e-32 150.0
8 TraesCS3D01G531300 chr3B 80.225 890 124 29 704 1569 816602692 816601831 2.790000e-174 621.0
9 TraesCS3D01G531300 chr3B 86.957 161 14 4 1762 1916 68913637 68913478 9.400000e-40 174.0
10 TraesCS3D01G531300 chr4D 86.471 170 15 4 1762 1923 21147733 21147902 2.020000e-41 180.0
11 TraesCS3D01G531300 chr4A 86.420 162 16 2 1762 1917 150653473 150653312 3.380000e-39 172.0
12 TraesCS3D01G531300 chr4A 86.250 160 18 1 1762 1917 469243056 469242897 1.220000e-38 171.0
13 TraesCS3D01G531300 chr5A 86.250 160 17 4 1762 1918 29507491 29507334 4.370000e-38 169.0
14 TraesCS3D01G531300 chr6B 85.455 165 18 4 1762 1920 232734979 232734815 1.570000e-37 167.0
15 TraesCS3D01G531300 chr2A 84.795 171 20 3 1762 1926 676177967 676177797 1.570000e-37 167.0
16 TraesCS3D01G531300 chr7D 91.379 58 5 0 166 223 44570529 44570586 2.110000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G531300 chr3D 607378653 607381208 2555 False 4721.0 4721 100.00000 1 2556 1 chr3D.!!$F1 2555
1 TraesCS3D01G531300 chr3D 607091434 607092399 965 True 697.0 697 80.14100 607 1576 1 chr3D.!!$R1 969
2 TraesCS3D01G531300 chr3A 739949393 739955553 6160 False 747.5 1877 88.55825 108 2556 4 chr3A.!!$F2 2448
3 TraesCS3D01G531300 chr3B 816601831 816602692 861 True 621.0 621 80.22500 704 1569 1 chr3B.!!$R2 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.162933 CATGTCGTGTGCGTTGTACC 59.837 55.0 0.0 0.0 39.49 3.34 F
60 61 0.249531 TGTCGTGTGCGTTGTACCAT 60.250 50.0 0.0 0.0 39.49 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 1861 0.447801 GACTAAGCAACCATGGTGCG 59.552 55.0 20.6 14.26 37.35 5.34 R
1642 2178 0.613777 ATTGTCCGTCAAGGGAGTCC 59.386 55.0 0.0 0.00 39.55 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.936891 CCAAAATCCAAGCACTTATAGGC 58.063 43.478 0.00 0.00 0.00 3.93
23 24 4.646492 CCAAAATCCAAGCACTTATAGGCT 59.354 41.667 0.00 0.00 43.46 4.58
34 35 7.361457 AGCACTTATAGGCTTATAAGACACA 57.639 36.000 31.35 8.03 46.17 3.72
35 36 7.792032 AGCACTTATAGGCTTATAAGACACAA 58.208 34.615 31.35 9.56 46.17 3.33
36 37 8.432805 AGCACTTATAGGCTTATAAGACACAAT 58.567 33.333 31.35 12.39 46.17 2.71
37 38 8.713271 GCACTTATAGGCTTATAAGACACAATC 58.287 37.037 31.35 14.10 46.17 2.67
38 39 8.916654 CACTTATAGGCTTATAAGACACAATCG 58.083 37.037 31.35 11.53 46.17 3.34
39 40 7.599245 ACTTATAGGCTTATAAGACACAATCGC 59.401 37.037 31.35 0.22 46.17 4.58
40 41 4.137116 AGGCTTATAAGACACAATCGCA 57.863 40.909 20.52 0.00 36.14 5.10
41 42 4.708177 AGGCTTATAAGACACAATCGCAT 58.292 39.130 20.52 0.00 36.14 4.73
42 43 4.512944 AGGCTTATAAGACACAATCGCATG 59.487 41.667 20.52 0.00 36.14 4.06
43 44 4.273480 GGCTTATAAGACACAATCGCATGT 59.727 41.667 16.85 0.00 32.98 3.21
44 45 5.435557 GCTTATAAGACACAATCGCATGTC 58.564 41.667 16.85 0.00 44.64 3.06
47 48 3.568181 GACACAATCGCATGTCGTG 57.432 52.632 8.91 5.35 36.20 4.35
48 49 0.790207 GACACAATCGCATGTCGTGT 59.210 50.000 8.91 8.03 43.18 4.49
49 50 0.512518 ACACAATCGCATGTCGTGTG 59.487 50.000 20.68 20.68 45.20 3.82
50 51 0.790495 CACAATCGCATGTCGTGTGC 60.790 55.000 14.98 0.00 38.00 4.57
55 56 2.631428 GCATGTCGTGTGCGTTGT 59.369 55.556 0.00 0.00 39.49 3.32
56 57 1.856688 GCATGTCGTGTGCGTTGTA 59.143 52.632 0.00 0.00 39.49 2.41
57 58 0.450482 GCATGTCGTGTGCGTTGTAC 60.450 55.000 0.00 0.00 39.49 2.90
58 59 0.162933 CATGTCGTGTGCGTTGTACC 59.837 55.000 0.00 0.00 39.49 3.34
59 60 0.249531 ATGTCGTGTGCGTTGTACCA 60.250 50.000 0.00 0.00 39.49 3.25
60 61 0.249531 TGTCGTGTGCGTTGTACCAT 60.250 50.000 0.00 0.00 39.49 3.55
61 62 0.162933 GTCGTGTGCGTTGTACCATG 59.837 55.000 0.00 0.00 39.49 3.66
62 63 0.249531 TCGTGTGCGTTGTACCATGT 60.250 50.000 0.00 0.00 39.49 3.21
63 64 0.584396 CGTGTGCGTTGTACCATGTT 59.416 50.000 0.00 0.00 0.00 2.71
64 65 1.003331 CGTGTGCGTTGTACCATGTTT 60.003 47.619 0.00 0.00 0.00 2.83
65 66 2.539953 CGTGTGCGTTGTACCATGTTTT 60.540 45.455 0.00 0.00 0.00 2.43
66 67 3.440228 GTGTGCGTTGTACCATGTTTTT 58.560 40.909 0.00 0.00 0.00 1.94
84 85 2.301577 TTTCGTTGTTTTTGGCAGGG 57.698 45.000 0.00 0.00 0.00 4.45
85 86 1.475403 TTCGTTGTTTTTGGCAGGGA 58.525 45.000 0.00 0.00 0.00 4.20
86 87 1.475403 TCGTTGTTTTTGGCAGGGAA 58.525 45.000 0.00 0.00 0.00 3.97
87 88 1.825474 TCGTTGTTTTTGGCAGGGAAA 59.175 42.857 0.00 0.00 0.00 3.13
88 89 2.233922 TCGTTGTTTTTGGCAGGGAAAA 59.766 40.909 0.00 0.00 0.00 2.29
89 90 3.118592 TCGTTGTTTTTGGCAGGGAAAAT 60.119 39.130 0.00 0.00 0.00 1.82
90 91 4.099573 TCGTTGTTTTTGGCAGGGAAAATA 59.900 37.500 0.00 0.00 0.00 1.40
91 92 4.210328 CGTTGTTTTTGGCAGGGAAAATAC 59.790 41.667 0.00 1.68 0.00 1.89
92 93 5.364778 GTTGTTTTTGGCAGGGAAAATACT 58.635 37.500 0.00 0.00 0.00 2.12
93 94 5.622346 TGTTTTTGGCAGGGAAAATACTT 57.378 34.783 0.00 0.00 0.00 2.24
94 95 5.363939 TGTTTTTGGCAGGGAAAATACTTG 58.636 37.500 0.00 0.00 0.00 3.16
95 96 5.104735 TGTTTTTGGCAGGGAAAATACTTGT 60.105 36.000 0.00 0.00 0.00 3.16
96 97 6.098409 TGTTTTTGGCAGGGAAAATACTTGTA 59.902 34.615 0.00 0.00 0.00 2.41
97 98 6.926630 TTTTGGCAGGGAAAATACTTGTAT 57.073 33.333 0.00 0.00 0.00 2.29
98 99 6.926630 TTTGGCAGGGAAAATACTTGTATT 57.073 33.333 0.60 0.60 0.00 1.89
99 100 8.423906 TTTTGGCAGGGAAAATACTTGTATTA 57.576 30.769 6.46 0.00 0.00 0.98
100 101 7.399245 TTGGCAGGGAAAATACTTGTATTAC 57.601 36.000 6.46 4.86 0.00 1.89
101 102 5.889289 TGGCAGGGAAAATACTTGTATTACC 59.111 40.000 6.46 11.62 0.00 2.85
102 103 6.127101 GGCAGGGAAAATACTTGTATTACCT 58.873 40.000 18.94 16.41 0.00 3.08
103 104 7.092354 TGGCAGGGAAAATACTTGTATTACCTA 60.092 37.037 18.94 8.04 0.00 3.08
104 105 7.776500 GGCAGGGAAAATACTTGTATTACCTAA 59.224 37.037 18.94 0.00 0.00 2.69
105 106 8.618677 GCAGGGAAAATACTTGTATTACCTAAC 58.381 37.037 18.94 13.05 0.00 2.34
106 107 9.675464 CAGGGAAAATACTTGTATTACCTAACA 57.325 33.333 18.94 0.00 0.00 2.41
129 130 6.204882 ACAAGTAGGCTTACAATCAGTTTCAC 59.795 38.462 8.86 0.00 32.87 3.18
135 137 8.177119 AGGCTTACAATCAGTTTCACAAATTA 57.823 30.769 0.00 0.00 0.00 1.40
164 166 4.284746 CCTTATCAGGTCCTGATCCTTACC 59.715 50.000 33.27 0.00 46.83 2.85
190 192 1.006832 CGATACGGCTTTGAACCCTG 58.993 55.000 0.00 0.00 0.00 4.45
245 345 3.050089 TGAAGTGGTTAGGTCCCTTTGA 58.950 45.455 0.00 0.00 0.00 2.69
247 347 1.985895 AGTGGTTAGGTCCCTTTGAGG 59.014 52.381 0.00 0.00 34.30 3.86
252 352 1.440618 TAGGTCCCTTTGAGGTTGCA 58.559 50.000 0.00 0.00 31.93 4.08
254 354 0.895559 GGTCCCTTTGAGGTTGCAGG 60.896 60.000 0.00 0.00 31.93 4.85
266 366 8.677148 TTTGAGGTTGCAGGATATTACTATTC 57.323 34.615 0.00 0.00 0.00 1.75
267 367 6.769512 TGAGGTTGCAGGATATTACTATTCC 58.230 40.000 0.00 0.00 0.00 3.01
272 372 3.933332 GCAGGATATTACTATTCCGGCAC 59.067 47.826 0.00 0.00 40.47 5.01
305 405 5.471797 TGGACGAAAGAACATGAAAAGCATA 59.528 36.000 0.00 0.00 34.82 3.14
319 427 7.985634 TGAAAAGCATACAGTTCTTTTTGAC 57.014 32.000 8.41 0.80 39.34 3.18
324 432 8.579682 AAGCATACAGTTCTTTTTGACAAATC 57.420 30.769 0.50 0.00 0.00 2.17
358 466 2.462456 TGAGAATCATATGCGGAGGC 57.538 50.000 0.00 0.00 42.56 4.70
383 492 3.761752 GGAGCAATGGTGGTAGCTTTTTA 59.238 43.478 0.00 0.00 37.48 1.52
388 497 5.477510 CAATGGTGGTAGCTTTTTATTGCA 58.522 37.500 0.00 0.00 0.00 4.08
410 519 8.279970 TGCAAGAAAACATGTATAATAGCTGT 57.720 30.769 0.00 0.00 0.00 4.40
415 524 9.046296 AGAAAACATGTATAATAGCTGTAGCAC 57.954 33.333 0.00 0.00 45.16 4.40
421 530 9.737427 CATGTATAATAGCTGTAGCACCTATAC 57.263 37.037 6.65 12.30 45.16 1.47
422 531 8.873186 TGTATAATAGCTGTAGCACCTATACA 57.127 34.615 18.10 18.10 45.16 2.29
423 532 8.737175 TGTATAATAGCTGTAGCACCTATACAC 58.263 37.037 18.10 5.74 45.16 2.90
424 533 8.958506 GTATAATAGCTGTAGCACCTATACACT 58.041 37.037 6.65 0.00 45.16 3.55
444 553 7.801716 ACACTAGAGCACAGTTTTAAATTCA 57.198 32.000 0.00 0.00 0.00 2.57
453 562 4.236935 CAGTTTTAAATTCATGTGCGCCT 58.763 39.130 4.18 0.00 0.00 5.52
468 577 2.223852 TGCGCCTTTGGGAAAAAGTAAC 60.224 45.455 4.18 0.00 33.58 2.50
469 578 2.657184 CGCCTTTGGGAAAAAGTAACG 58.343 47.619 0.00 0.00 33.58 3.18
474 583 3.719173 TTGGGAAAAAGTAACGCCTTG 57.281 42.857 0.00 0.00 0.00 3.61
478 587 4.202070 TGGGAAAAAGTAACGCCTTGAAAG 60.202 41.667 0.00 0.00 0.00 2.62
496 605 6.579666 TGAAAGCAGTTCAATAGCAATTCT 57.420 33.333 0.67 0.00 43.43 2.40
502 611 7.855545 AGCAGTTCAATAGCAATTCTAATACG 58.144 34.615 0.00 0.00 0.00 3.06
503 612 7.495934 AGCAGTTCAATAGCAATTCTAATACGT 59.504 33.333 0.00 0.00 0.00 3.57
511 620 4.705023 AGCAATTCTAATACGTGCCCTTTT 59.295 37.500 0.00 0.00 35.80 2.27
512 621 5.883673 AGCAATTCTAATACGTGCCCTTTTA 59.116 36.000 0.00 0.00 35.80 1.52
553 662 8.986477 AGTTAATATTTCCAGTTGTTTGATGC 57.014 30.769 0.00 0.00 0.00 3.91
584 1087 9.851686 ATGGACTAAATATAGTGAAATCAGCAA 57.148 29.630 0.00 0.00 42.47 3.91
602 1105 5.100259 CAGCAAAGTTATTGAAGCCAGATG 58.900 41.667 0.00 0.00 0.00 2.90
631 1134 5.276820 GCTTGGCACTTGTTTTGTTAATCAC 60.277 40.000 0.00 0.00 0.00 3.06
680 1183 6.913873 ACAAGTGTCGTAACTGTTTAATGT 57.086 33.333 0.00 0.00 0.00 2.71
688 1191 5.703592 TCGTAACTGTTTAATGTTCCATGCT 59.296 36.000 0.00 0.00 0.00 3.79
698 1201 9.884465 GTTTAATGTTCCATGCTAGAATATGAC 57.116 33.333 0.00 0.00 0.00 3.06
730 1240 2.413310 TTATCAGCGGAAGGGGAAAC 57.587 50.000 0.00 0.00 0.00 2.78
809 1321 8.636213 TCTTAGGTCCATTATAAGTTAGAACCG 58.364 37.037 0.00 0.00 0.00 4.44
811 1323 7.902920 AGGTCCATTATAAGTTAGAACCGTA 57.097 36.000 0.00 0.00 0.00 4.02
812 1324 7.949434 AGGTCCATTATAAGTTAGAACCGTAG 58.051 38.462 0.00 0.00 0.00 3.51
813 1325 6.644181 GGTCCATTATAAGTTAGAACCGTAGC 59.356 42.308 0.00 0.00 0.00 3.58
814 1326 7.432059 GTCCATTATAAGTTAGAACCGTAGCT 58.568 38.462 0.00 0.00 0.00 3.32
822 1336 2.381725 AGAACCGTAGCTAGCCAAAC 57.618 50.000 12.13 6.75 0.00 2.93
823 1337 1.900486 AGAACCGTAGCTAGCCAAACT 59.100 47.619 12.13 0.00 0.00 2.66
826 1340 2.173519 ACCGTAGCTAGCCAAACTACA 58.826 47.619 12.13 0.00 36.84 2.74
857 1371 1.600957 AGATTGATTCATTCAGCGCCG 59.399 47.619 2.29 0.00 35.27 6.46
860 1374 1.009078 TGATTCATTCAGCGCCGAAG 58.991 50.000 12.26 4.60 0.00 3.79
904 1429 7.962918 GCTAACAAGAAAGATTCGCTCAAAATA 59.037 33.333 0.00 0.00 34.02 1.40
932 1458 7.987458 TCAAAAGTGAGAATATGATACCCACTC 59.013 37.037 0.00 0.00 32.91 3.51
939 1465 2.027751 GATACCCACTCGCCGCTC 59.972 66.667 0.00 0.00 0.00 5.03
1010 1539 1.892474 GCTGCAAACCAATTCCTACCA 59.108 47.619 0.00 0.00 0.00 3.25
1023 1552 2.917933 TCCTACCATTCCAGCATTTCG 58.082 47.619 0.00 0.00 0.00 3.46
1032 1561 1.746787 TCCAGCATTTCGTCGTAGCTA 59.253 47.619 0.00 0.00 33.59 3.32
1099 1628 2.551912 CGAAGCCCACCAACACCAC 61.552 63.158 0.00 0.00 0.00 4.16
1222 1751 5.266733 ACAACCATGCCAATGATATCAAC 57.733 39.130 9.99 0.71 35.67 3.18
1332 1861 7.575265 ACAACCATGTATCCAGCTTCTTAAGC 61.575 42.308 3.43 3.43 46.21 3.09
1380 1909 1.527034 TCTGCTCATGCTTTGTCCAC 58.473 50.000 0.00 0.00 40.48 4.02
1412 1941 3.549794 AGAATAAGAGGTGATGCTTGGC 58.450 45.455 0.00 0.00 0.00 4.52
1430 1959 5.374071 CTTGGCGGTAACCTAAATATTCCT 58.626 41.667 0.00 0.00 0.00 3.36
1527 2058 4.354071 TTTGCAACATCGATGTATGGTG 57.646 40.909 30.16 23.97 45.57 4.17
1576 2112 4.613944 ACAATGATGCTGTTCAACTTGTG 58.386 39.130 0.00 0.00 0.00 3.33
1592 2128 6.206634 TCAACTTGTGAAAGGATACACATTCC 59.793 38.462 0.00 0.00 44.56 3.01
1593 2129 5.630121 ACTTGTGAAAGGATACACATTCCA 58.370 37.500 0.00 0.00 44.56 3.53
1601 2137 5.323382 AGGATACACATTCCATGGCATAA 57.677 39.130 6.96 0.00 41.41 1.90
1617 2153 5.015515 TGGCATAATGGTCTTTCATTGACA 58.984 37.500 0.00 0.00 37.82 3.58
1642 2178 5.226396 TGAATTTAAGTTGGGCAAACGATG 58.774 37.500 0.00 0.00 44.04 3.84
1650 2186 1.299976 GGCAAACGATGGACTCCCT 59.700 57.895 0.00 0.00 0.00 4.20
1658 2194 0.175989 GATGGACTCCCTTGACGGAC 59.824 60.000 0.00 0.00 33.16 4.79
1681 2217 5.600484 ACAATTTGTCACAAACATCCCCTAA 59.400 36.000 4.73 0.00 37.82 2.69
1753 2289 6.933514 ACAAAATCCATTACAATTCCACCT 57.066 33.333 0.00 0.00 0.00 4.00
1760 2296 4.881850 CCATTACAATTCCACCTCAGTACC 59.118 45.833 0.00 0.00 0.00 3.34
1761 2297 5.496556 CATTACAATTCCACCTCAGTACCA 58.503 41.667 0.00 0.00 0.00 3.25
1769 2305 1.085715 ACCTCAGTACCACTCCCTCT 58.914 55.000 0.00 0.00 0.00 3.69
1831 2367 5.491070 ACTACGTACGGATGTATATAGGCA 58.509 41.667 21.06 0.00 32.11 4.75
1865 2401 8.948631 AGTGTACACTCATTTTACTCCATATG 57.051 34.615 22.95 0.00 36.92 1.78
1887 2423 7.904558 ATGTAGTCCATATTGAAGTCTCTGA 57.095 36.000 0.00 0.00 29.82 3.27
1892 2428 4.718774 TCCATATTGAAGTCTCTGAAGGCT 59.281 41.667 0.00 0.00 39.86 4.58
1904 2440 8.189119 AGTCTCTGAAGGCTTATATTTAGGAG 57.811 38.462 0.00 0.05 31.90 3.69
1905 2441 6.871492 GTCTCTGAAGGCTTATATTTAGGAGC 59.129 42.308 0.00 0.00 0.00 4.70
1908 2444 3.336138 AGGCTTATATTTAGGAGCGGC 57.664 47.619 0.00 0.00 36.02 6.53
1910 2446 2.353406 GGCTTATATTTAGGAGCGGCGA 60.353 50.000 12.98 0.00 36.02 5.54
1934 2480 9.464714 CGAGAGTAGATTATAGCAGCTTAAAAA 57.535 33.333 0.00 0.00 0.00 1.94
1989 5716 2.291605 TGCAGTAGAAGCACCTCTAGGA 60.292 50.000 2.23 0.00 37.02 2.94
1995 5722 3.839778 AGAAGCACCTCTAGGATACCTC 58.160 50.000 2.23 0.00 38.94 3.85
2009 5736 5.139727 AGGATACCTCTCAGTTCTCATGAG 58.860 45.833 17.07 17.07 41.23 2.90
2011 5738 2.818921 ACCTCTCAGTTCTCATGAGCT 58.181 47.619 18.36 7.44 43.20 4.09
2015 5742 4.322574 CCTCTCAGTTCTCATGAGCTCAAA 60.323 45.833 22.50 11.22 43.20 2.69
2017 5744 4.525874 TCTCAGTTCTCATGAGCTCAAAGA 59.474 41.667 22.50 22.13 43.20 2.52
2045 5772 1.494721 AGACAAAGGAGGTTTCCAGCA 59.505 47.619 0.00 0.00 46.64 4.41
2052 5779 2.695147 AGGAGGTTTCCAGCACTTTTTG 59.305 45.455 0.00 0.00 46.64 2.44
2063 5791 5.009010 TCCAGCACTTTTTGATTTCTCTGAC 59.991 40.000 0.00 0.00 0.00 3.51
2134 5877 4.815308 GCAAGACTCATTCAGTATCAGCAT 59.185 41.667 0.00 0.00 34.41 3.79
2135 5878 5.987953 GCAAGACTCATTCAGTATCAGCATA 59.012 40.000 0.00 0.00 34.41 3.14
2141 5884 7.183860 ACTCATTCAGTATCAGCATAAGTGCC 61.184 42.308 0.00 0.00 42.64 5.01
2160 5903 0.370273 CAAGAACGTGGCGACATAGC 59.630 55.000 0.00 0.00 46.14 2.97
2177 5920 6.237675 CGACATAGCAACTAAGTGATCAACTG 60.238 42.308 0.00 0.00 39.81 3.16
2199 5942 5.312895 TGCAGCAATTAGAAACTAACCAGA 58.687 37.500 0.00 0.00 0.00 3.86
2287 6030 8.213518 TGTTCCAGCAATTCTTATTCAGTATC 57.786 34.615 0.00 0.00 0.00 2.24
2288 6031 8.049117 TGTTCCAGCAATTCTTATTCAGTATCT 58.951 33.333 0.00 0.00 0.00 1.98
2306 6073 9.656323 TCAGTATCTTTAACACCCTAGTATGAT 57.344 33.333 0.00 0.00 0.00 2.45
2322 6089 5.240891 AGTATGATTACTCAATGGCCATCG 58.759 41.667 21.08 8.41 33.18 3.84
2326 6093 5.237815 TGATTACTCAATGGCCATCGTATC 58.762 41.667 21.08 15.46 0.00 2.24
2447 6214 9.997482 ACAATACGGAAACATATTTCACATAAC 57.003 29.630 0.00 0.00 45.26 1.89
2448 6215 9.995957 CAATACGGAAACATATTTCACATAACA 57.004 29.630 0.00 0.00 45.26 2.41
2493 6260 8.282592 TGATTGTTTAGAAGTTGATGTTTCTCG 58.717 33.333 0.00 0.00 35.42 4.04
2501 6268 5.028549 AGTTGATGTTTCTCGATATGCCT 57.971 39.130 0.00 0.00 0.00 4.75
2502 6269 5.431765 AGTTGATGTTTCTCGATATGCCTT 58.568 37.500 0.00 0.00 0.00 4.35
2503 6270 6.582636 AGTTGATGTTTCTCGATATGCCTTA 58.417 36.000 0.00 0.00 0.00 2.69
2539 6306 7.371043 AGTAGGGAATACTATTCTTTCCTGGA 58.629 38.462 12.21 0.00 43.17 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.646492 AGCCTATAAGTGCTTGGATTTTGG 59.354 41.667 0.00 0.00 32.94 3.28
1 2 5.841957 AGCCTATAAGTGCTTGGATTTTG 57.158 39.130 0.00 0.00 32.94 2.44
2 3 9.640952 TTATAAGCCTATAAGTGCTTGGATTTT 57.359 29.630 6.98 0.00 46.66 1.82
3 4 9.289782 CTTATAAGCCTATAAGTGCTTGGATTT 57.710 33.333 12.27 0.00 46.66 2.17
4 5 8.660435 TCTTATAAGCCTATAAGTGCTTGGATT 58.340 33.333 17.70 0.00 46.66 3.01
5 6 8.097662 GTCTTATAAGCCTATAAGTGCTTGGAT 58.902 37.037 17.70 0.00 46.66 3.41
6 7 7.070696 TGTCTTATAAGCCTATAAGTGCTTGGA 59.929 37.037 17.70 0.00 46.66 3.53
7 8 7.171678 GTGTCTTATAAGCCTATAAGTGCTTGG 59.828 40.741 17.70 0.00 46.66 3.61
8 9 7.710907 TGTGTCTTATAAGCCTATAAGTGCTTG 59.289 37.037 17.70 0.00 46.66 4.01
10 11 7.361457 TGTGTCTTATAAGCCTATAAGTGCT 57.639 36.000 17.70 0.00 43.96 4.40
11 12 8.608844 ATTGTGTCTTATAAGCCTATAAGTGC 57.391 34.615 17.70 13.45 43.96 4.40
12 13 8.916654 CGATTGTGTCTTATAAGCCTATAAGTG 58.083 37.037 17.70 0.13 43.96 3.16
13 14 7.599245 GCGATTGTGTCTTATAAGCCTATAAGT 59.401 37.037 17.70 2.37 43.96 2.24
14 15 7.598869 TGCGATTGTGTCTTATAAGCCTATAAG 59.401 37.037 13.78 13.78 44.53 1.73
15 16 7.438564 TGCGATTGTGTCTTATAAGCCTATAA 58.561 34.615 7.67 2.21 0.00 0.98
16 17 6.988522 TGCGATTGTGTCTTATAAGCCTATA 58.011 36.000 7.67 0.00 0.00 1.31
17 18 5.853936 TGCGATTGTGTCTTATAAGCCTAT 58.146 37.500 7.67 1.38 0.00 2.57
18 19 5.270893 TGCGATTGTGTCTTATAAGCCTA 57.729 39.130 7.67 0.00 0.00 3.93
19 20 4.137116 TGCGATTGTGTCTTATAAGCCT 57.863 40.909 7.67 0.00 0.00 4.58
20 21 4.273480 ACATGCGATTGTGTCTTATAAGCC 59.727 41.667 7.67 0.00 0.00 4.35
21 22 5.409643 ACATGCGATTGTGTCTTATAAGC 57.590 39.130 7.67 4.06 0.00 3.09
22 23 5.232202 ACGACATGCGATTGTGTCTTATAAG 59.768 40.000 14.88 6.11 44.57 1.73
23 24 5.005299 CACGACATGCGATTGTGTCTTATAA 59.995 40.000 14.88 0.00 44.57 0.98
24 25 4.502645 CACGACATGCGATTGTGTCTTATA 59.497 41.667 14.88 0.00 44.57 0.98
25 26 3.306973 CACGACATGCGATTGTGTCTTAT 59.693 43.478 14.88 0.00 44.57 1.73
26 27 2.666022 CACGACATGCGATTGTGTCTTA 59.334 45.455 14.88 0.00 44.57 2.10
27 28 1.460743 CACGACATGCGATTGTGTCTT 59.539 47.619 14.88 0.00 44.57 3.01
28 29 1.070821 CACGACATGCGATTGTGTCT 58.929 50.000 14.88 0.00 44.57 3.41
29 30 0.790207 ACACGACATGCGATTGTGTC 59.210 50.000 14.88 0.00 44.57 3.67
30 31 0.512518 CACACGACATGCGATTGTGT 59.487 50.000 14.88 8.85 44.02 3.72
31 32 0.790495 GCACACGACATGCGATTGTG 60.790 55.000 19.29 19.29 44.84 3.33
32 33 1.497278 GCACACGACATGCGATTGT 59.503 52.632 14.88 7.88 44.57 2.71
33 34 4.348081 GCACACGACATGCGATTG 57.652 55.556 14.88 11.56 44.57 2.67
38 39 0.450482 GTACAACGCACACGACATGC 60.450 55.000 0.00 0.00 43.93 4.06
39 40 0.162933 GGTACAACGCACACGACATG 59.837 55.000 0.00 0.00 43.93 3.21
40 41 0.249531 TGGTACAACGCACACGACAT 60.250 50.000 0.00 0.00 44.16 3.06
41 42 1.141234 TGGTACAACGCACACGACA 59.859 52.632 0.00 0.00 44.16 4.35
42 43 4.015578 TGGTACAACGCACACGAC 57.984 55.556 0.00 0.00 44.16 4.34
63 64 3.003480 CCCTGCCAAAAACAACGAAAAA 58.997 40.909 0.00 0.00 0.00 1.94
64 65 2.233922 TCCCTGCCAAAAACAACGAAAA 59.766 40.909 0.00 0.00 0.00 2.29
65 66 1.825474 TCCCTGCCAAAAACAACGAAA 59.175 42.857 0.00 0.00 0.00 3.46
66 67 1.475403 TCCCTGCCAAAAACAACGAA 58.525 45.000 0.00 0.00 0.00 3.85
67 68 1.475403 TTCCCTGCCAAAAACAACGA 58.525 45.000 0.00 0.00 0.00 3.85
68 69 2.301577 TTTCCCTGCCAAAAACAACG 57.698 45.000 0.00 0.00 0.00 4.10
69 70 5.364778 AGTATTTTCCCTGCCAAAAACAAC 58.635 37.500 0.00 0.00 0.00 3.32
70 71 5.622346 AGTATTTTCCCTGCCAAAAACAA 57.378 34.783 0.00 0.00 0.00 2.83
71 72 5.104735 ACAAGTATTTTCCCTGCCAAAAACA 60.105 36.000 0.00 0.00 0.00 2.83
72 73 5.364778 ACAAGTATTTTCCCTGCCAAAAAC 58.635 37.500 0.00 0.00 0.00 2.43
73 74 5.622346 ACAAGTATTTTCCCTGCCAAAAA 57.378 34.783 0.00 0.00 0.00 1.94
74 75 6.926630 ATACAAGTATTTTCCCTGCCAAAA 57.073 33.333 0.00 0.00 0.00 2.44
75 76 6.926630 AATACAAGTATTTTCCCTGCCAAA 57.073 33.333 0.00 0.00 32.21 3.28
76 77 6.378848 GGTAATACAAGTATTTTCCCTGCCAA 59.621 38.462 10.41 0.00 37.07 4.52
77 78 5.889289 GGTAATACAAGTATTTTCCCTGCCA 59.111 40.000 10.41 0.00 37.07 4.92
78 79 6.127101 AGGTAATACAAGTATTTTCCCTGCC 58.873 40.000 10.41 0.00 37.07 4.85
79 80 8.618677 GTTAGGTAATACAAGTATTTTCCCTGC 58.381 37.037 18.69 12.37 37.07 4.85
80 81 9.675464 TGTTAGGTAATACAAGTATTTTCCCTG 57.325 33.333 18.69 0.00 37.07 4.45
101 102 7.907214 AACTGATTGTAAGCCTACTTGTTAG 57.093 36.000 0.00 0.00 36.57 2.34
102 103 7.934665 TGAAACTGATTGTAAGCCTACTTGTTA 59.065 33.333 0.00 0.00 36.57 2.41
103 104 6.770785 TGAAACTGATTGTAAGCCTACTTGTT 59.229 34.615 0.00 0.00 36.57 2.83
104 105 6.204882 GTGAAACTGATTGTAAGCCTACTTGT 59.795 38.462 0.00 0.00 36.57 3.16
105 106 6.204688 TGTGAAACTGATTGTAAGCCTACTTG 59.795 38.462 0.00 0.00 35.31 3.16
106 107 6.296026 TGTGAAACTGATTGTAAGCCTACTT 58.704 36.000 0.00 0.00 37.59 2.24
161 163 0.533491 AGCCGTATCGCTGTTTGGTA 59.467 50.000 0.00 0.00 37.82 3.25
162 164 0.321298 AAGCCGTATCGCTGTTTGGT 60.321 50.000 0.00 0.00 39.64 3.67
164 166 1.463056 TCAAAGCCGTATCGCTGTTTG 59.537 47.619 0.00 0.00 39.64 2.93
190 192 2.012673 CACTTCATGGCTAGTTCTGGC 58.987 52.381 0.00 0.00 0.00 4.85
245 345 5.280011 CCGGAATAGTAATATCCTGCAACCT 60.280 44.000 0.00 0.00 0.00 3.50
247 347 4.392138 GCCGGAATAGTAATATCCTGCAAC 59.608 45.833 5.05 0.00 41.45 4.17
252 352 5.483937 TCATGTGCCGGAATAGTAATATCCT 59.516 40.000 5.05 0.00 0.00 3.24
254 354 7.667043 TTTCATGTGCCGGAATAGTAATATC 57.333 36.000 5.05 0.00 0.00 1.63
266 366 0.240945 GTCCACTTTTCATGTGCCGG 59.759 55.000 0.00 0.00 34.38 6.13
267 367 0.110238 CGTCCACTTTTCATGTGCCG 60.110 55.000 0.00 0.00 34.38 5.69
272 372 5.168526 TGTTCTTTCGTCCACTTTTCATG 57.831 39.130 0.00 0.00 0.00 3.07
305 405 7.535139 TCTTTCGATTTGTCAAAAAGAACTGT 58.465 30.769 14.51 0.00 34.10 3.55
358 466 1.098050 GCTACCACCATTGCTCCTTG 58.902 55.000 0.00 0.00 0.00 3.61
372 480 7.707774 TGTTTTCTTGCAATAAAAAGCTACC 57.292 32.000 20.35 10.31 0.00 3.18
383 492 9.740239 CAGCTATTATACATGTTTTCTTGCAAT 57.260 29.630 2.30 0.00 0.00 3.56
388 497 9.613428 TGCTACAGCTATTATACATGTTTTCTT 57.387 29.630 2.30 0.00 42.66 2.52
406 515 4.320641 GCTCTAGTGTATAGGTGCTACAGC 60.321 50.000 0.00 0.00 42.50 4.40
407 516 4.822350 TGCTCTAGTGTATAGGTGCTACAG 59.178 45.833 0.00 0.00 30.07 2.74
410 519 4.788679 TGTGCTCTAGTGTATAGGTGCTA 58.211 43.478 0.00 0.00 0.00 3.49
415 524 8.997621 TTTAAAACTGTGCTCTAGTGTATAGG 57.002 34.615 10.44 0.00 0.00 2.57
421 530 8.292448 ACATGAATTTAAAACTGTGCTCTAGTG 58.708 33.333 0.00 0.00 0.00 2.74
422 531 8.292448 CACATGAATTTAAAACTGTGCTCTAGT 58.708 33.333 0.00 0.00 0.00 2.57
423 532 8.665175 CACATGAATTTAAAACTGTGCTCTAG 57.335 34.615 0.00 0.00 0.00 2.43
444 553 0.755686 TTTTTCCCAAAGGCGCACAT 59.244 45.000 10.83 0.00 0.00 3.21
450 559 2.400399 GCGTTACTTTTTCCCAAAGGC 58.600 47.619 0.00 0.00 0.00 4.35
453 562 3.700038 TCAAGGCGTTACTTTTTCCCAAA 59.300 39.130 0.00 0.00 0.00 3.28
478 587 7.584123 CACGTATTAGAATTGCTATTGAACTGC 59.416 37.037 0.00 0.00 0.00 4.40
490 599 7.548196 TCTAAAAGGGCACGTATTAGAATTG 57.452 36.000 8.19 0.00 31.58 2.32
493 602 9.669887 TTTATTCTAAAAGGGCACGTATTAGAA 57.330 29.630 19.27 19.27 43.06 2.10
495 604 9.321562 TCTTTATTCTAAAAGGGCACGTATTAG 57.678 33.333 0.00 3.04 37.13 1.73
496 605 9.669887 TTCTTTATTCTAAAAGGGCACGTATTA 57.330 29.630 0.00 0.00 37.13 0.98
502 611 9.705290 TTGATTTTCTTTATTCTAAAAGGGCAC 57.295 29.630 0.00 0.00 37.13 5.01
503 612 9.927668 CTTGATTTTCTTTATTCTAAAAGGGCA 57.072 29.630 0.00 0.00 37.13 5.36
542 651 2.669434 GTCCATGCATGCATCAAACAAC 59.331 45.455 30.07 16.57 33.90 3.32
584 1087 4.946157 CAGGTCATCTGGCTTCAATAACTT 59.054 41.667 0.00 0.00 39.76 2.66
591 1094 0.694771 AAGCAGGTCATCTGGCTTCA 59.305 50.000 0.00 0.00 43.54 3.02
602 1105 0.746659 AAACAAGTGCCAAGCAGGTC 59.253 50.000 0.00 0.00 40.08 3.85
678 1181 6.051074 CACTGTCATATTCTAGCATGGAACA 58.949 40.000 0.00 0.00 38.82 3.18
679 1182 5.049818 GCACTGTCATATTCTAGCATGGAAC 60.050 44.000 0.00 0.00 38.82 3.62
680 1183 5.059161 GCACTGTCATATTCTAGCATGGAA 58.941 41.667 0.00 0.00 40.84 3.53
698 1201 4.811024 TCCGCTGATAAAAGATAAGCACTG 59.189 41.667 0.00 0.00 33.41 3.66
730 1240 2.514458 AGTAGGAAGCATTGGGTTGG 57.486 50.000 0.00 0.00 34.25 3.77
794 1306 6.547141 TGGCTAGCTACGGTTCTAACTTATAA 59.453 38.462 15.72 0.00 0.00 0.98
809 1321 7.040473 TCTTCTATGTAGTTTGGCTAGCTAC 57.960 40.000 15.72 14.13 36.54 3.58
811 1323 6.739331 ATCTTCTATGTAGTTTGGCTAGCT 57.261 37.500 15.72 0.00 0.00 3.32
812 1324 8.888579 TTTATCTTCTATGTAGTTTGGCTAGC 57.111 34.615 6.04 6.04 0.00 3.42
841 1355 1.009078 CTTCGGCGCTGAATGAATCA 58.991 50.000 30.61 8.25 36.38 2.57
904 1429 7.770897 GTGGGTATCATATTCTCACTTTTGACT 59.229 37.037 0.00 0.00 0.00 3.41
932 1458 0.940126 ATGCTTATTCTTGAGCGGCG 59.060 50.000 0.51 0.51 41.75 6.46
939 1465 4.261909 GGCCAATGAGGATGCTTATTCTTG 60.262 45.833 0.00 0.00 41.22 3.02
982 1508 4.321899 GGAATTGGTTTGCAGCTGTGATTA 60.322 41.667 16.64 0.00 0.00 1.75
1010 1539 1.933853 GCTACGACGAAATGCTGGAAT 59.066 47.619 0.00 0.00 0.00 3.01
1032 1561 3.053693 TGGTATGTGGCTCCTTGCTTAAT 60.054 43.478 0.00 0.00 42.39 1.40
1050 1579 7.124573 AGCATACAAGTATGAGACATTGGTA 57.875 36.000 21.08 0.00 44.22 3.25
1099 1628 1.339610 TGGTTGTCCTGAAATTTGGCG 59.660 47.619 0.00 0.00 34.23 5.69
1222 1751 6.872547 CCACATCCTTACTCACATCATCTATG 59.127 42.308 0.00 0.00 41.74 2.23
1332 1861 0.447801 GACTAAGCAACCATGGTGCG 59.552 55.000 20.60 14.26 37.35 5.34
1339 1868 5.661312 AGATAGTACCATGACTAAGCAACCA 59.339 40.000 0.00 0.00 35.58 3.67
1412 1941 9.688592 CACTACTTAGGAATATTTAGGTTACCG 57.311 37.037 0.00 0.00 0.00 4.02
1473 2003 8.268850 ACAACATATTCACTTCGCTTCTATTT 57.731 30.769 0.00 0.00 0.00 1.40
1508 2039 2.984562 ACACCATACATCGATGTTGCA 58.015 42.857 34.06 18.42 41.97 4.08
1576 2112 3.953612 TGCCATGGAATGTGTATCCTTTC 59.046 43.478 18.40 0.00 44.81 2.62
1579 2115 3.889859 ATGCCATGGAATGTGTATCCT 57.110 42.857 18.40 0.00 44.81 3.24
1592 2128 5.981315 GTCAATGAAAGACCATTATGCCATG 59.019 40.000 0.00 0.00 35.20 3.66
1593 2129 5.657745 TGTCAATGAAAGACCATTATGCCAT 59.342 36.000 0.00 0.00 35.20 4.40
1617 2153 5.848406 TCGTTTGCCCAACTTAAATTCATT 58.152 33.333 0.00 0.00 32.53 2.57
1630 2166 1.002624 GGAGTCCATCGTTTGCCCA 60.003 57.895 3.60 0.00 0.00 5.36
1642 2178 0.613777 ATTGTCCGTCAAGGGAGTCC 59.386 55.000 0.00 0.00 39.55 3.85
1650 2186 4.082733 TGTTTGTGACAAATTGTCCGTCAA 60.083 37.500 21.75 19.17 46.40 3.18
1658 2194 4.605640 AGGGGATGTTTGTGACAAATTG 57.394 40.909 14.40 0.00 42.62 2.32
1673 2209 4.111577 TCAGTGTTTCCATCTTAGGGGAT 58.888 43.478 0.00 0.00 32.15 3.85
1681 2217 2.821969 GTTGGCATCAGTGTTTCCATCT 59.178 45.455 0.00 0.00 0.00 2.90
1734 2270 5.831103 ACTGAGGTGGAATTGTAATGGATT 58.169 37.500 0.00 0.00 0.00 3.01
1739 2275 5.250774 AGTGGTACTGAGGTGGAATTGTAAT 59.749 40.000 0.00 0.00 0.00 1.89
1753 2289 2.696526 AACAGAGGGAGTGGTACTGA 57.303 50.000 0.00 0.00 33.53 3.41
1760 2296 7.442666 GGCTTATATTTAGAAACAGAGGGAGTG 59.557 40.741 0.00 0.00 0.00 3.51
1761 2297 7.420330 GGGCTTATATTTAGAAACAGAGGGAGT 60.420 40.741 0.00 0.00 0.00 3.85
1792 2328 7.416022 CGTACGTAGTTCCTATTGAAATCTCT 58.584 38.462 7.22 0.00 37.78 3.10
1795 2331 6.498304 TCCGTACGTAGTTCCTATTGAAATC 58.502 40.000 15.21 0.00 37.78 2.17
1801 2337 8.798859 ATATACATCCGTACGTAGTTCCTATT 57.201 34.615 15.21 0.00 37.78 1.73
1813 2349 9.947669 CTAAAGTATGCCTATATACATCCGTAC 57.052 37.037 0.00 0.00 36.27 3.67
1865 2401 7.206687 CCTTCAGAGACTTCAATATGGACTAC 58.793 42.308 0.00 0.00 0.00 2.73
1880 2416 6.871492 GCTCCTAAATATAAGCCTTCAGAGAC 59.129 42.308 0.00 0.00 0.00 3.36
1887 2423 3.676093 GCCGCTCCTAAATATAAGCCTT 58.324 45.455 0.00 0.00 0.00 4.35
1892 2428 3.825014 ACTCTCGCCGCTCCTAAATATAA 59.175 43.478 0.00 0.00 0.00 0.98
1896 2432 1.609555 CTACTCTCGCCGCTCCTAAAT 59.390 52.381 0.00 0.00 0.00 1.40
1904 2440 2.161808 TGCTATAATCTACTCTCGCCGC 59.838 50.000 0.00 0.00 0.00 6.53
1905 2441 3.729462 GCTGCTATAATCTACTCTCGCCG 60.729 52.174 0.00 0.00 0.00 6.46
1908 2444 9.464714 TTTTTAAGCTGCTATAATCTACTCTCG 57.535 33.333 0.90 0.00 0.00 4.04
1934 2480 7.448161 TGTCAAATTTATCCTATCGGCATGATT 59.552 33.333 0.00 0.00 38.57 2.57
1937 2483 6.558771 TGTCAAATTTATCCTATCGGCATG 57.441 37.500 0.00 0.00 0.00 4.06
1942 2488 6.618592 GCCGTCATGTCAAATTTATCCTATCG 60.619 42.308 0.00 0.00 0.00 2.92
1961 2507 1.079819 GCTTCTACTGCAGCCGTCA 60.080 57.895 15.27 0.00 0.00 4.35
1964 2510 3.479370 GTGCTTCTACTGCAGCCG 58.521 61.111 15.27 4.92 41.41 5.52
1989 5716 4.545678 AGCTCATGAGAACTGAGAGGTAT 58.454 43.478 27.04 0.00 42.22 2.73
1995 5722 4.818642 TCTTTGAGCTCATGAGAACTGAG 58.181 43.478 27.04 16.16 42.47 3.35
2009 5736 6.874134 TCCTTTGTCTACACTTATCTTTGAGC 59.126 38.462 0.00 0.00 0.00 4.26
2011 5738 7.016268 ACCTCCTTTGTCTACACTTATCTTTGA 59.984 37.037 0.00 0.00 0.00 2.69
2015 5742 6.936968 AACCTCCTTTGTCTACACTTATCT 57.063 37.500 0.00 0.00 0.00 1.98
2017 5744 6.043938 TGGAAACCTCCTTTGTCTACACTTAT 59.956 38.462 0.00 0.00 42.94 1.73
2052 5779 9.561270 GCAACCTTTATTTTAGTCAGAGAAATC 57.439 33.333 0.00 0.00 0.00 2.17
2063 5791 4.673534 ACCGTCGCAACCTTTATTTTAG 57.326 40.909 0.00 0.00 0.00 1.85
2141 5884 0.370273 GCTATGTCGCCACGTTCTTG 59.630 55.000 0.00 0.00 0.00 3.02
2148 5891 2.348666 CACTTAGTTGCTATGTCGCCAC 59.651 50.000 0.00 0.00 0.00 5.01
2153 5896 6.456181 GCAGTTGATCACTTAGTTGCTATGTC 60.456 42.308 0.00 0.00 30.92 3.06
2160 5903 3.499537 TGCTGCAGTTGATCACTTAGTTG 59.500 43.478 16.64 0.00 30.92 3.16
2177 5920 5.880054 TCTGGTTAGTTTCTAATTGCTGC 57.120 39.130 0.00 0.00 0.00 5.25
2254 5997 6.839124 AAGAATTGCTGGAACATGACATAA 57.161 33.333 0.00 0.00 38.20 1.90
2306 6073 4.955811 AGATACGATGGCCATTGAGTAA 57.044 40.909 35.32 18.95 0.00 2.24
2421 6188 9.997482 GTTATGTGAAATATGTTTCCGTATTGT 57.003 29.630 11.86 0.00 42.44 2.71
2422 6189 9.995957 TGTTATGTGAAATATGTTTCCGTATTG 57.004 29.630 11.86 0.00 42.44 1.90
2511 6278 9.549078 CAGGAAAGAATAGTATTCCCTACTTTC 57.451 37.037 17.52 17.72 42.93 2.62
2522 6289 8.846423 TTCTCTCTTCCAGGAAAGAATAGTAT 57.154 34.615 9.86 0.00 34.95 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.