AutoCloner

Multiple sequence alignment - TraesCS3D01G527600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G527600	chr3D	100.000	2405	0	0	1	2405	606002054	606004458	0.000000e+00	4442.0
1	TraesCS3D01G527600	chr3D	90.167	1261	118	5	563	1820	605677002	605678259	0.000000e+00	1637.0
2	TraesCS3D01G527600	chr3D	89.327	1040	91	7	562	1599	605973994	605975015	0.000000e+00	1288.0
3	TraesCS3D01G527600	chr3D	86.849	1095	115	17	564	1657	605632139	605633205	0.000000e+00	1197.0
4	TraesCS3D01G527600	chr3D	91.204	216	19	0	348	563	605676596	605676811	6.500000e-76	294.0
5	TraesCS3D01G527600	chr3D	91.667	192	13	3	1632	1822	605975008	605975197	1.830000e-66	263.0
6	TraesCS3D01G527600	chr3D	84.030	263	37	4	302	563	605955441	605955699	5.130000e-62	248.0
7	TraesCS3D01G527600	chr3D	79.573	328	48	12	2083	2403	605639438	605639753	1.450000e-52	217.0
8	TraesCS3D01G527600	chr3D	89.831	118	11	1	165	282	606773669	606773553	1.490000e-32	150.0
9	TraesCS3D01G527600	chr3D	81.757	148	15	1	1898	2033	605639137	605639284	1.950000e-21	113.0
10	TraesCS3D01G527600	chr3A	90.442	1266	113	4	562	1822	738919034	738917772	0.000000e+00	1661.0
11	TraesCS3D01G527600	chr3A	90.284	1266	115	4	562	1822	738245116	738243854	0.000000e+00	1650.0
12	TraesCS3D01G527600	chr3A	89.753	1054	100	6	562	1611	738691457	738690408	0.000000e+00	1341.0
13	TraesCS3D01G527600	chr3A	87.662	1078	111	12	563	1622	738223050	738221977	0.000000e+00	1234.0
14	TraesCS3D01G527600	chr3A	90.190	897	87	1	562	1457	738708272	738707376	0.000000e+00	1168.0
15	TraesCS3D01G527600	chr3A	78.646	576	90	19	20	569	738855737	738855169	3.800000e-93	351.0
16	TraesCS3D01G527600	chr3A	87.549	257	30	1	305	561	738919480	738919226	1.810000e-76	296.0
17	TraesCS3D01G527600	chr3A	90.090	222	19	2	349	569	738237852	738237633	3.910000e-73	285.0
18	TraesCS3D01G527600	chr3A	85.714	266	35	3	305	569	738223497	738223234	6.550000e-71	278.0
19	TraesCS3D01G527600	chr3A	89.815	216	22	0	348	563	738708676	738708461	6.550000e-71	278.0
20	TraesCS3D01G527600	chr3A	84.231	260	38	3	305	563	738305338	738305081	1.430000e-62	250.0
21	TraesCS3D01G527600	chr3A	91.111	180	12	4	1645	1822	738690425	738690248	8.590000e-60	241.0
22	TraesCS3D01G527600	chr3A	89.560	182	17	2	1641	1821	738757305	738757125	1.860000e-56	230.0
23	TraesCS3D01G527600	chr3A	82.065	184	23	9	104	283	738223761	738223584	5.360000e-32	148.0
24	TraesCS3D01G527600	chr3B	95.248	989	41	6	1419	2405	816097988	816097004	0.000000e+00	1561.0
25	TraesCS3D01G527600	chr3B	87.199	1203	133	16	635	1822	816039928	816038732	0.000000e+00	1349.0
26	TraesCS3D01G527600	chr3B	86.207	232	24	8	53	283	816172441	816172217	6.640000e-61	244.0
27	TraesCS3D01G527600	chr5B	86.692	263	32	2	302	563	621477808	621477548	3.030000e-74	289.0
28	TraesCS3D01G527600	chr5B	89.655	116	12	0	168	283	621469246	621469131	5.360000e-32	148.0
29	TraesCS3D01G527600	chr5A	85.985	264	34	2	302	564	624723564	624723303	1.820000e-71	279.0
30	TraesCS3D01G527600	chr5A	90.517	116	11	0	168	283	624712178	624712063	1.150000e-33	154.0
31	TraesCS3D01G527600	chr5A	89.583	48	5	0	1639	1686	624717494	624717447	7.180000e-06	62.1
32	TraesCS3D01G527600	chrUn	86.076	237	24	9	49	283	367633274	367633045	1.850000e-61	246.0
33	TraesCS3D01G527600	chrUn	86.207	232	24	8	53	283	42327207	42326983	6.640000e-61	244.0
34	TraesCS3D01G527600	chrUn	86.207	232	24	8	53	283	399337157	399337381	6.640000e-61	244.0
35	TraesCS3D01G527600	chr5D	89.655	116	12	0	168	283	500138226	500138111	5.360000e-32	148.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G527600	chr3D	606002054	606004458	2404	False	4442.000000	4442	100.0000	1	2405	1	chr3D.!!$F3	2404
1	TraesCS3D01G527600	chr3D	605632139	605633205	1066	False	1197.000000	1197	86.8490	564	1657	1	chr3D.!!$F1	1093
2	TraesCS3D01G527600	chr3D	605676596	605678259	1663	False	965.500000	1637	90.6855	348	1820	2	chr3D.!!$F5	1472
3	TraesCS3D01G527600	chr3D	605973994	605975197	1203	False	775.500000	1288	90.4970	562	1822	2	chr3D.!!$F6	1260
4	TraesCS3D01G527600	chr3A	738243854	738245116	1262	True	1650.000000	1650	90.2840	562	1822	1	chr3A.!!$R2	1260
5	TraesCS3D01G527600	chr3A	738917772	738919480	1708	True	978.500000	1661	88.9955	305	1822	2	chr3A.!!$R9	1517
6	TraesCS3D01G527600	chr3A	738690248	738691457	1209	True	791.000000	1341	90.4320	562	1822	2	chr3A.!!$R7	1260
7	TraesCS3D01G527600	chr3A	738707376	738708676	1300	True	723.000000	1168	90.0025	348	1457	2	chr3A.!!$R8	1109
8	TraesCS3D01G527600	chr3A	738221977	738223761	1784	True	553.333333	1234	85.1470	104	1622	3	chr3A.!!$R6	1518
9	TraesCS3D01G527600	chr3A	738855169	738855737	568	True	351.000000	351	78.6460	20	569	1	chr3A.!!$R5	549
10	TraesCS3D01G527600	chr3B	816097004	816097988	984	True	1561.000000	1561	95.2480	1419	2405	1	chr3B.!!$R2	986
11	TraesCS3D01G527600	chr3B	816038732	816039928	1196	True	1349.000000	1349	87.1990	635	1822	1	chr3B.!!$R1	1187

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
299	357	1.363807	GTGGCAGGACAAAACAGCC	59.636	57.895	0.0	0.0	45.41	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1720	2018	0.028902	AAAGCGCCGAGAAAACACAC	59.971	50.0	2.29	0.0	0.0	3.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	66	8.801715	ATTGCAAGTTACTGTTAGTGATTTTG	57.198	30.769	4.94	0.00	0.00	2.44
63	68	7.767261	TGCAAGTTACTGTTAGTGATTTTGTT	58.233	30.769	0.00	0.00	0.00	2.83
68	73	8.466798	AGTTACTGTTAGTGATTTTGTTTTGCT	58.533	29.630	0.00	0.00	0.00	3.91
115	120	6.093495	TCCTGTCGCTAGGTTTCATTTAATTG	59.907	38.462	4.95	0.00	38.99	2.32
117	122	5.034797	GTCGCTAGGTTTCATTTAATTGGC	58.965	41.667	0.00	0.00	0.00	4.52
131	137	8.584157	TCATTTAATTGGCTGATGTACTGTTTT	58.416	29.630	0.00	0.00	0.00	2.43
149	155	8.902540	ACTGTTTTATGTTAACTGAGTGATGA	57.097	30.769	7.22	0.00	0.00	2.92
150	156	9.507329	ACTGTTTTATGTTAACTGAGTGATGAT	57.493	29.630	7.22	0.00	0.00	2.45
151	157	9.764870	CTGTTTTATGTTAACTGAGTGATGATG	57.235	33.333	7.22	0.00	0.00	3.07
153	159	9.546909	GTTTTATGTTAACTGAGTGATGATGTG	57.453	33.333	7.22	0.00	0.00	3.21
154	160	9.500785	TTTTATGTTAACTGAGTGATGATGTGA	57.499	29.630	7.22	0.00	0.00	3.58
155	161	9.671279	TTTATGTTAACTGAGTGATGATGTGAT	57.329	29.630	7.22	0.00	0.00	3.06
158	164	7.809665	TGTTAACTGAGTGATGATGTGATTTG	58.190	34.615	7.22	0.00	0.00	2.32
161	171	6.250344	ACTGAGTGATGATGTGATTTGTTG	57.750	37.500	0.00	0.00	0.00	3.33
239	249	4.686191	ATGAATGCCTTCAACCAAACAA	57.314	36.364	8.55	0.00	44.29	2.83
245	255	4.942852	TGCCTTCAACCAAACAAATGTAG	58.057	39.130	0.00	0.00	0.00	2.74
252	262	8.463930	TTCAACCAAACAAATGTAGAGAGATT	57.536	30.769	0.00	0.00	0.00	2.40
299	357	1.363807	GTGGCAGGACAAAACAGCC	59.636	57.895	0.00	0.00	45.41	4.85
367	444	4.407365	ACCTTAAACAGCTTAATGCCTGT	58.593	39.130	0.00	0.00	44.23	4.00
388	465	7.504574	GCCTGTAGGTATAATTATTGGGTTGTT	59.495	37.037	2.68	0.00	37.57	2.83
419	496	3.603532	TGGCATTCTACTTCTGAGCTTG	58.396	45.455	0.00	0.00	0.00	4.01
466	543	7.503549	AGATGGAAAAGAAATGTTCAAAAGCT	58.496	30.769	0.00	0.00	0.00	3.74
467	544	6.907206	TGGAAAAGAAATGTTCAAAAGCTG	57.093	33.333	0.00	0.00	0.00	4.24
544	621	5.319140	TCATCTGATGAAACTGCAAATGG	57.681	39.130	17.56	0.00	36.11	3.16
637	905	6.270927	ACTGCTGGTGTATGATTATGTATCCT	59.729	38.462	0.00	0.00	31.87	3.24
686	954	5.345609	GCAGATGCAAGTAATGATCTCTG	57.654	43.478	0.00	0.00	41.59	3.35
716	984	5.789574	TGGGGTGATTACTTAAGGATTGT	57.210	39.130	7.53	0.00	0.00	2.71
765	1033	2.499289	TCTCCACTCTTCAGCTTCCATC	59.501	50.000	0.00	0.00	0.00	3.51
768	1036	2.500910	CCACTCTTCAGCTTCCATCTCT	59.499	50.000	0.00	0.00	0.00	3.10
786	1054	6.151817	CCATCTCTATCTTCCATCGTGATGTA	59.848	42.308	8.89	0.00	37.11	2.29
996	1264	3.258372	TGGTACTAGTGGAGTTGCTTCTG	59.742	47.826	5.39	0.00	39.81	3.02
1139	1407	4.067896	GCAACTGAGGAAGAGATCAACAA	58.932	43.478	0.00	0.00	0.00	2.83
1173	1441	3.716585	GAGCGATGCTTGAGGCTC	58.283	61.111	7.79	7.79	44.24	4.70
1228	1496	2.685897	GAGACGGAACTGCAGACTCTAT	59.314	50.000	23.35	8.51	32.71	1.98
1248	1516	2.139917	TGGACAAAACGGATGAACTCG	58.860	47.619	0.00	0.00	0.00	4.18
1283	1551	2.283617	CGAGAAATGGAGAACAGATGCG	59.716	50.000	0.00	0.00	0.00	4.73
1333	1601	0.742505	TTCTCGGCAATCGTCCGTAT	59.257	50.000	1.22	0.00	46.49	3.06
1356	1624	1.605738	AGGAGGTAGCCAACGACGT	60.606	57.895	0.00	0.00	0.00	4.34
1561	1848	1.748493	TCGGTTGGAATTATGCTTGGC	59.252	47.619	0.00	0.00	0.00	4.52
1689	1984	4.461431	AGCAATGATTTTGAGCACTCATGA	59.539	37.500	0.31	0.00	39.64	3.07
1720	2018	3.242284	CGTTGCCACCATTAGTACATTCG	60.242	47.826	0.00	0.00	0.00	3.34
1811	2111	2.874701	AGGCATTCAGATACATGTTCGC	59.125	45.455	2.30	0.70	0.00	4.70
1812	2112	2.613595	GGCATTCAGATACATGTTCGCA	59.386	45.455	2.30	0.00	0.00	5.10
1852	2153	5.252969	TGCAAATATGAAGGAGAATGCAC	57.747	39.130	0.00	0.00	37.61	4.57
1909	2210	4.036380	GTGGAACTCTAAAGGTGTTGGTTG	59.964	45.833	0.00	0.00	32.64	3.77
1912	2213	5.449999	GGAACTCTAAAGGTGTTGGTTGTTG	60.450	44.000	0.00	0.00	32.64	3.33
1955	2256	5.108517	TGACACTTTTCACCTGAAATTTGC	58.891	37.500	0.00	0.00	42.83	3.68
1956	2257	4.111916	ACACTTTTCACCTGAAATTTGCG	58.888	39.130	0.00	0.00	42.83	4.85
1959	2260	5.399301	CACTTTTCACCTGAAATTTGCGTAG	59.601	40.000	0.00	0.00	42.83	3.51
2001	2302	4.082300	CCAGATCTCTCGATTGTGGGATAG	60.082	50.000	0.00	0.00	33.51	2.08
2046	2347	1.746615	CCACTGATCGGCCCAACTG	60.747	63.158	0.00	0.00	0.00	3.16
2216	2517	5.301805	ACAATTTACAGGTGAACCAAAGGAG	59.698	40.000	1.62	0.00	38.89	3.69
2228	2529	4.706842	ACCAAAGGAGTCAATGTACAGT	57.293	40.909	0.33	0.00	0.00	3.55
2259	2560	3.508402	TCCTGCTATGTCGTGTACTTGAA	59.492	43.478	0.00	0.00	0.00	2.69
2267	2568	7.113684	GCTATGTCGTGTACTTGAATCTGTATC	59.886	40.741	0.00	0.00	0.00	2.24
2291	2592	7.155328	TCTTTAGTTCATCTCCAGTGTTCTTC	58.845	38.462	0.00	0.00	0.00	2.87
2296	2597	6.830838	AGTTCATCTCCAGTGTTCTTCTTTTT	59.169	34.615	0.00	0.00	0.00	1.94
2322	2623	4.938575	AACAGGTACAATTGGGGATGTA	57.061	40.909	10.83	0.00	0.00	2.29
2348	2649	7.676947	TCCATTTACTGTTAGTTAGCTCAGTT	58.323	34.615	8.59	0.00	40.77	3.16
2349	2650	8.809066	TCCATTTACTGTTAGTTAGCTCAGTTA	58.191	33.333	8.59	0.00	40.77	2.24
2358	2659	7.123697	TGTTAGTTAGCTCAGTTAGAAGCCATA	59.876	37.037	0.00	0.00	0.00	2.74
2376	2677	6.292150	AGCCATAAGTTAGCTTATCTTCCAC	58.708	40.000	8.73	0.00	43.82	4.02
2379	2680	8.097662	GCCATAAGTTAGCTTATCTTCCACTAT	58.902	37.037	8.73	0.00	43.82	2.12
2397	2698	6.481976	TCCACTATTAACACTCAATATTGCCG	59.518	38.462	10.76	6.78	0.00	5.69
2400	2701	4.850859	TTAACACTCAATATTGCCGTCG	57.149	40.909	10.76	7.69	0.00	5.12
2402	2703	1.206132	ACACTCAATATTGCCGTCGGA	59.794	47.619	17.49	0.00	0.00	4.55
2404	2705	2.030457	CACTCAATATTGCCGTCGGAAC	59.970	50.000	17.49	0.00	0.00	3.62

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	9.891828	CAAAATCACTAACAGTAACTTGCAATA	57.108	29.630	0.00	0.00	0.00	1.90
36	37	8.413229	ACAAAATCACTAACAGTAACTTGCAAT	58.587	29.630	0.00	0.00	0.00	3.56
42	43	8.466798	AGCAAAACAAAATCACTAACAGTAACT	58.533	29.630	0.00	0.00	0.00	2.24
80	85	8.747538	AAACCTAGCGACAGGAATAATAAAAT	57.252	30.769	9.51	0.00	39.18	1.82
87	92	5.353394	AATGAAACCTAGCGACAGGAATA	57.647	39.130	9.51	0.00	39.18	1.75
92	97	6.258160	CCAATTAAATGAAACCTAGCGACAG	58.742	40.000	0.00	0.00	0.00	3.51
96	101	5.036737	CAGCCAATTAAATGAAACCTAGCG	58.963	41.667	0.00	0.00	0.00	4.26
97	102	6.207691	TCAGCCAATTAAATGAAACCTAGC	57.792	37.500	0.00	0.00	0.00	3.42
98	103	7.775120	ACATCAGCCAATTAAATGAAACCTAG	58.225	34.615	0.00	0.00	0.00	3.02
99	104	7.716799	ACATCAGCCAATTAAATGAAACCTA	57.283	32.000	0.00	0.00	0.00	3.08
100	105	6.610075	ACATCAGCCAATTAAATGAAACCT	57.390	33.333	0.00	0.00	0.00	3.50
101	106	7.489113	CAGTACATCAGCCAATTAAATGAAACC	59.511	37.037	0.00	0.00	0.00	3.27
102	107	8.028938	ACAGTACATCAGCCAATTAAATGAAAC	58.971	33.333	0.00	0.00	0.00	2.78
115	120	7.962918	CAGTTAACATAAAACAGTACATCAGCC	59.037	37.037	8.61	0.00	0.00	4.85
131	137	9.671279	AAATCACATCATCACTCAGTTAACATA	57.329	29.630	8.61	0.00	0.00	2.29
143	149	5.165676	ACATGCAACAAATCACATCATCAC	58.834	37.500	0.00	0.00	0.00	3.06
239	249	9.851686	TTGTATTATGGCAAATCTCTCTACATT	57.148	29.630	0.00	0.00	0.00	2.71
245	255	8.225603	TCCTTTTGTATTATGGCAAATCTCTC	57.774	34.615	0.00	0.00	34.99	3.20
252	262	6.210385	TGAAGCTTCCTTTTGTATTATGGCAA	59.790	34.615	23.42	0.00	0.00	4.52
327	404	5.552870	AAGGTTTCTCTTCTAGCTTGTCA	57.447	39.130	0.00	0.00	0.00	3.58
388	465	6.756074	CAGAAGTAGAATGCCAAAACAACAAA	59.244	34.615	0.00	0.00	0.00	2.83
393	470	4.216257	GCTCAGAAGTAGAATGCCAAAACA	59.784	41.667	0.00	0.00	0.00	2.83
419	496	3.839293	ACGAATGAGAAGTACTGCACTC	58.161	45.455	3.00	10.24	36.04	3.51
637	905	1.123077	ACTTCAGACAGTGAGCCACA	58.877	50.000	0.00	0.00	36.21	4.17
684	952	4.398319	AGTAATCACCCCAAGACAAACAG	58.602	43.478	0.00	0.00	0.00	3.16
686	954	6.072119	CCTTAAGTAATCACCCCAAGACAAAC	60.072	42.308	0.97	0.00	0.00	2.93
716	984	1.293498	GCTCCTGCTGTTTCGAGGA	59.707	57.895	0.00	0.00	34.61	3.71
765	1033	8.824159	ATTTTACATCACGATGGAAGATAGAG	57.176	34.615	11.54	0.00	42.16	2.43
768	1036	7.735917	AGGATTTTACATCACGATGGAAGATA	58.264	34.615	11.54	0.21	42.16	1.98
786	1054	9.927081	ACATCCAAGAGTATATTTGAGGATTTT	57.073	29.630	0.00	0.00	32.61	1.82
825	1093	2.100584	TGCGCCAAAATCTGACACTTTT	59.899	40.909	4.18	0.00	0.00	2.27
996	1264	4.836125	TGTGAAAACAGGCTTCATTCTC	57.164	40.909	0.00	0.00	35.36	2.87
1173	1441	0.882927	TTGGTCTTTCTTCGCCGTGG	60.883	55.000	0.00	0.00	0.00	4.94
1228	1496	2.139917	CGAGTTCATCCGTTTTGTCCA	58.860	47.619	0.00	0.00	0.00	4.02
1248	1516	1.107114	TTCTCGGATCAGGCTGAGAC	58.893	55.000	23.24	17.80	46.88	3.36
1283	1551	2.712057	TCGAGTTAACGACCTTGGTC	57.288	50.000	9.62	9.62	37.37	4.02
1356	1624	3.969976	AGAACTCTGCCTCCATGCTATAA	59.030	43.478	0.00	0.00	0.00	0.98
1689	1984	0.179032	TGGTGGCAACGACAAGACAT	60.179	50.000	0.00	0.00	42.51	3.06
1720	2018	0.028902	AAAGCGCCGAGAAAACACAC	59.971	50.000	2.29	0.00	0.00	3.82
1767	2067	2.607635	TCATATTTGCGCCGAGAGAAAC	59.392	45.455	4.18	0.00	0.00	2.78
1811	2111	2.154462	CACCTAGCCACCTTCTGTTTG	58.846	52.381	0.00	0.00	0.00	2.93
1812	2112	1.545651	GCACCTAGCCACCTTCTGTTT	60.546	52.381	0.00	0.00	37.23	2.83
1964	2265	2.866085	ATCTGGCTTGAGCGTGCTCC	62.866	60.000	18.51	4.97	42.09	4.70
1968	2269	0.175302	AGAGATCTGGCTTGAGCGTG	59.825	55.000	0.00	0.00	43.26	5.34
2001	2302	4.036027	CACCACTGTCCATTATGCTGATTC	59.964	45.833	0.00	0.00	0.00	2.52
2046	2347	2.050077	GTTTCGCAAGGCCAGCAC	60.050	61.111	18.67	7.11	38.47	4.40
2138	2439	0.743097	GCCTGAGATTGTTCCCATGC	59.257	55.000	0.00	0.00	0.00	4.06
2216	2517	6.857964	CAGGAAATGAACAACTGTACATTGAC	59.142	38.462	18.72	13.78	34.02	3.18
2228	2529	4.154015	CACGACATAGCAGGAAATGAACAA	59.846	41.667	0.00	0.00	0.00	2.83
2259	2560	8.420222	CACTGGAGATGAACTAAAGATACAGAT	58.580	37.037	0.00	0.00	0.00	2.90
2267	2568	7.158021	AGAAGAACACTGGAGATGAACTAAAG	58.842	38.462	0.00	0.00	0.00	1.85
2296	2597	6.012333	ACATCCCCAATTGTACCTGTTACTAA	60.012	38.462	4.43	0.00	0.00	2.24
2297	2598	5.489637	ACATCCCCAATTGTACCTGTTACTA	59.510	40.000	4.43	0.00	0.00	1.82
2298	2599	4.291249	ACATCCCCAATTGTACCTGTTACT	59.709	41.667	4.43	0.00	0.00	2.24
2299	2600	4.595986	ACATCCCCAATTGTACCTGTTAC	58.404	43.478	4.43	0.00	0.00	2.50
2300	2601	4.938575	ACATCCCCAATTGTACCTGTTA	57.061	40.909	4.43	0.00	0.00	2.41
2302	2603	4.141251	GGATACATCCCCAATTGTACCTGT	60.141	45.833	4.43	5.59	41.20	4.00
2303	2604	4.141274	TGGATACATCCCCAATTGTACCTG	60.141	45.833	4.43	0.00	46.59	4.00
2304	2605	4.051478	TGGATACATCCCCAATTGTACCT	58.949	43.478	4.43	0.00	46.59	3.08
2305	2606	4.447138	TGGATACATCCCCAATTGTACC	57.553	45.455	4.43	0.00	46.59	3.34
2322	2623	7.852263	ACTGAGCTAACTAACAGTAAATGGAT	58.148	34.615	1.87	0.00	40.96	3.41
2376	2677	6.346598	CCGACGGCAATATTGAGTGTTAATAG	60.347	42.308	19.73	4.81	0.00	1.73
2379	2680	3.619483	CCGACGGCAATATTGAGTGTTAA	59.381	43.478	19.73	0.00	0.00	2.01
2381	2682	2.006888	CCGACGGCAATATTGAGTGTT	58.993	47.619	19.73	0.00	0.00	3.32
2383	2684	1.934589	TCCGACGGCAATATTGAGTG	58.065	50.000	19.73	9.64	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.