>input_sequence_81355
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-------------------------------------------------------------------ATGAAGCCTGTTT
TCACAAGTGAATCAGGCACAGTCAAGAGCTTGTCAAACTATTTTCTGCAGGAGTTCAACGAGGGGAGAATCACAGGTATT
GTTAATTCTCAGGTCCTTGAGGAGGCAACTGAGGAAGAGATCAACAATGTCGCCTCTTTGGCAGAGCGATGCTTGAGGCT
CCACGGCGAAGAAAGACCAACCATGAAACAGGTGGAGACGGAACTGCAGACTCTATGGACAAAACGGATGAACTCGTCTC
AGCCTGATCCGAGAAATGGAGAACAGATGCGACCAAGGTCGTTAACTCGAAGGAGTAGATCTTCTCGGCAATCGTCCGTA
TGGCCAGGAGGTAGCCAACGACGTTATAGCATGGAGGCAGAGTTCTTGTCATCTGCTAGCCTACCACGTTAG--------
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------------------------------------------------------------------
>chr3D_1_TraesCS3D01G527600
TTGTACAGATGTATTAGGAGTGTTTTATTAAAATATATTGCAAGTTACTGT----TAGTGATTTTGTTTTGCTATTTCTA
GTTTATTTTATTATTCCTGTCGCTAGGTTTCATTTAATTGGCTGATGTAC-TGTTTTATGTTAACTGAGTGATGATGTGA
TTTG----TTGCATGTTATATATTTTATCAACACGTCTTATCAAGATTTTGTTAATTTCAGATATTAATGAATGCCTTCA
ACCAAACAAATGTAGAGAGATTTGCCATAATACAAAAGGAAGCTTCAGTTGTGGC-------------------------
-----------------------AGGACAAAACAGCC---TCTA--------------TATT--ATTGTTACATTTTTAC
GATTGACAAGCTAGAAGAGAAACCTTAAACAGCTTAATGCCTGTAGGTATAATTATTGGGTTGTTTTGTTGTTTTGGCAT
TCTACTTCTGAGCTTGAGTGCAGTACTTCTCATTCGTAGATGGAAAAGAAATGTTCAAAAGCTGCTACGGAAAAATTATT
TCCGGAAGAACCAAGGTCTTCTCCTAGAAACGTTGATATCATCTGATGAAACTGCAAATGGGAATACTAAGATTTTC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCACAGAAATATTGTGAAGCTCTTTGGATGTTGTCTTGAAACTGAGGTTCCA
CTGCTGGTGTATGATTATGTATCCTGTGGCTCACTGTCTGAAGTTCTTCATGCAGATGCAAGTAATGATCTCTGTTTGTC
TTGGGGTGATTACTTAAGGATTGTCCTCGAAACAGCAGGAGCTCTGTCTTATCTCCACTCTTCAGCTTCCATCTCTATCT
TCCATCGTGATGTAAAATCCTCAAATATACTCTTGGATGTGAACTACACAGCAAAAGTGTCAGATTTTGGCGCATCCAGA
TTGGTTCCGATCGATCAAACGCACATTGTCACGAATGTGCAGGGTACATTTGGGTACTTAGATCCAGAGTATTTCCATAC
CAGGCAGCTGAACGGGAAGAGCGACGTGTACAGTTTTGGTGTGGTACTAGTGGAGTTGCTTCTGAGAATGAAGCCTGTTT
TCACAAGTGAATCAGGCACAGTCAAGAGCTTGTCAAACTATTTTCTGCAGGAGTTCAACGAGGGGAGAATCACAGGTATT
GTTAATTCTCAGGTCCTTGAGGAGGCAACTGAGGAAGAGATCAACAATGTCGCCTCTTTGGCAGAGCGATGCTTGAGGCT
CCACGGCGAAGAAAGACCAACCATGAAACAGGTGGAGACGGAACTGCAGACTCTATGGACAAAACGGATGAACTCGTCTC
AGCCTGATCCGAGAAATGGAGAACAGATGCGACCAAGGTCGTTAACTCGAAGGAGTAGATCTTCTCGGCAATCGTCCGTA
TGGCCAGGAGGTAGCCAACGACGTTATAGCATGGAGGCAGAGTTCTTGTCATCTGCTAGCCTACCACGTTAGATGAGGCT
ATTGAGCTTAT--AATAATGGATAATTTGTTTCCCTCTTTTGTTAAATTTTGCTAGAACCTGTATT-ACAGGGTAGTTAG
ATTGGTACTGTAATAA-------------GTC---ATGATTTCAGGCATCATGGTTGTATCAGTTTCTCGGTTGGAATTA
TGCTTGGCG---CTATATGTAGAATTCTCATTTTGTTACCCTGAGATGTGTAGTGAATTGCTGTCATATGCAGTGTGTTG
CTGACAC-----GTTTATAAGAGATGTAGTGGATTATATTAGCAATGATTTTGAGCACTCATGATGTCTTGTCGT---TG
CCACCATTAGTACATTCGTGTGTTTTCTCGGCGCTTTTTTTAATAC-AAATATAT-GGTTCAAGTTGTTTCTCTCGGCGC
AAATATGACAGGCATTCAGATACATGTTCGCAAA-CAGAAGGTGGCTAGGTGCAAATATGAAGGAGAATGCACATTCAAT
TTTACATGATATCTGAAAGTGTCTAGGTGGAACTCTAAAGGTGTTGGTTGTTGTAGTTTTCCCATCTATATATGACACTT
TTCACCTGAAATTTGCGTAGCGCCGGAGCACGCTCAAGCCAGATCTCTCGATTGTGGGATAGAATCAGCATAATGGACAG
TGGTGGTGCCACTGATCGGCCCAACTGTGCTGGCCTTGCGAAACAGGACTCTCCGCGTCGTTGAAAGAGGAGGCCTTCAA
AGATTTGGATGCATATATAAAAATCATGAGATTGAGCAGCATGGGAACAATCTCAGGCATTAGGGAATCTTCAGTTCTGA
TGAATCCAGAGTACAATTTACAGGTGAACCAAAGGAGTCAATGTACAGTTGTTCATTTCCTGCTATGTCGTGTACTTGAA
TCTGTATCTTTAGTTCATCTCCAGTGTTCTTCTTTTTTAGTAACAGGTACAATTGGGGATGTATCCATTTACTGTTAGTT
AGCTCAGTTAGAAGCCATAAGTTAGCTTATCTTCCACTATTAACACTCAATATTGCCGTCGGAAC-
>chr3A_20
GTGTT---------------------ATTTTAAAAACTTGCATGTTACTAGTAGATAGTGATTTTTTGTTACCACTTCTA
GTTTGTTTTATCATTCATGTAAGC----TTCATTTAATTAAACGACACAC-TGTTTCATGCCAATTGAATGATGTATAAT
CTTCCGACTTCCATGTTGTAGATTTTGCTGGTGCATCTTATTAAATTTTTGTTAATTTCAGATGTTGATGAATGCCTTCA
ACCGAACATATGTAATGGGATCTGCCATAATACCAAAGGAAGCTTCAGTTGTGGC-------------------------
-----------------------AGGACAAAACAACA---TCTACTCTTAGGTAAGACTATATCATTGTTACATTTGTAC
TATGGACAAGCCAGAAGAGAAACTTAAAACAACTTATTGCCTGCAGGTATACTTATTGGGCTGTGTTGTGGTTTCGGCAT
TCTACTTTTGTGCTTCTGTGCAACCTTTCTCATTCGCAGATGGAAAAGAAATGTTCAGAAGAAACTACGGAAGAGCTATT
TCCGGAAGAACCAAGGTCTTATCCTCGAAACGTTGTTATCATCCGATGAAACTGCAAATGAGAATACCAATATTTTCTCG
ATAGAA--------------------------------------------------------------------------
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------------------------------------------------------------------
>chr3A_104
--------------------------------------------------------------------------------
---------------------------TTTCGTTTGAATTGATTATGTCTGTATTCCGTGTTAACTGGATAATGTATTCT
GTTCA-------ATATTATATATTTTATCGATGCATTTTATCAAGATTTCGTTATTTTCAGATATTAATGAATGCCTTCA
ACCAAACAGTTGTAAAGAGATCTGCCATAACACAGAAGGAAGCTTCAATTGTACTGAATGTCCTTACAAGACACAGTATG
ATCCATTTAAAATGCAGTGTACTAGGACAAAAGAGCGGACTCTGCTCTTAGGTAACATTATT--ATTGT--CATCTTTAT
GATAGACAAGATAAAACTGAAACTTAAAAAAGTTTAATGACTGCAGGTATAATTATTGGGCTATCCTGCGGTTTTGCTAT
TCTACTTCCGAGCTTCAGTTCAGTACTTCTCATTCGTAGATGGAAAAGAAATGTTCAACAGCAACTGCAGAAGAATTATT
TCCAGAAGAACCAAGGTCTTCTCCTAGAAACATTGATATCATCTGATGAAACTGCAACTGAGAATACTAAGATTTTCTCG
CTAGAAGAGCTAGAGAAGGCAACAAATAGTTTTGATCCTACACTTATCATCGGACGTGGGGGCCATGGCATGGTTTACAA
AGACATATTGTCTGATCAGCGCGTCGTTGCAGTAAAAAAGTCTAAGGTCATTGAGCAGTCCGAGATCAGTCAATTCATCA
ATGAGGTCGCAGTGCTCACTCAGATAAACCACAGAAATATTGTGAAGCTATTTGGATGATGTCTCGAAACAGAGGTTCCG
CTGCTGGTGTATGATTATGTATCCAGTGGCTCACTGTCTGAAGTTCTTCATGCAGATGCAAGTGATGGTTTTTCTTTATC
TTGGGGTGATTATTTAAGGATTGCCCTCGAAACAGCAGGAGCTCTATCTTATCTCCACTCTTCAGCTTCCATATCAATCT
TCCATCGTGATGTGAAGTCCTCAAATATACTCTTGGATGTGAACTACACAGCTAAAGTTTCAGATTTTGGTGCGTCCAGA
TTGGTTCCTATCGATCAAACACACATTGTTACAAATGTGCAGGGTACATTTGGGTACTTAGATCCAGAGTATTTCCATAC
TAGGCAGCTGAACGGGAAGAGTGACGTGTACAGTTTTGGTGTGGTACTGGTGGAGTTGCTTCTCAGAATGAAACCTGTTT
TCACAAGTGAATCAGGCACGATCAAGAGCTTGTCGAACTATTTTCTCCAGGAGTTCAATGAAGGAAGAATCACAGGTATT
GTTAATTCCCAGGTCCTCGAAGAAGCAACCGAAGAAGAAATCAACACTGTCGCCTCTTTGGCAGAGCGGTGCTTGAGGCT
ACACGGCGAAGAAAGACCAACCATGAAACAGGTGGAGACGGAACTGCAGACTCTCCAGACGGAACGGGTAAAGTCATCTC
AGGCAGATCCAAGGAATGAAGAACCGATGCCACCAAGGACGTTAACTCGAAGGACTATATCTACTCGGCAATCGTCTGTA
CCGTCAGGAGAAAGCCAACGACGATATAGCTTGGAGGCAGAGTTCATGTCATCTGCTAGCATACCACGCTAGATGAAATT
GTGTAGTTCAT--AATAATGGATAATTTCTTTCCCTGTTTTGTGAAGTGTTGCTAGGACCAGTATT-ACAGGCTAGTTAG
ATTGGTGTTGTAATACTAAGTCAATTTATGTCCAGATGATTTCAGGCATCATGATTGTATCAGTTTCTCGGTTGGAATTT
TGTTTACTT---ATATAGGTAGACTGG--TTTTTATTACCTTGAGATGTGGAGTGAATTACTGGCATACGC---------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>chr3A_305
--------------------------------------------------------------------------------
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----------------------------------------------------------TATT--ATTGT--TCCATTTTT
TATAAACAAGTTAGAACGGAAACTTAAAAGAGCTTAATGCCTACAAGTATAATTATTGGGTTGGCTTGTGGTTTCGGCAT
TCTATTTCTGAGCTTCAGTGCAGCACTTCTCATTCGTAGATGGAAAAGAAATGTTCAAAAGCAACTACGGAAGAACTATT
TCCGGAAGAACCAAGGTCTTCTACTAGAAACGTTGATAATATCGGATGAAACTGCAAATGAGAATACTAATATTTTCCCT
TTAGAAGAGCTGGAGAAGGCAACAAACAACTTTGATCCTACACGTATCATCAGACATGGGGGCCACGGCATGGTTTTCAA
AGGCATATTGTCTGATCGGCATGTTGTTGCAATAAAAAAGTCTAAGATCATTAGGCAGTGTGAGATCAGTCAATTCATTA
ATGAGGTCGCAGTCCTCTCACAGATAAATCACAGAAATATTGTGAAGCTCTTTGGATGTTGCCTTGAAACCGAGGTTCCA
CTACTGGTGTATGATTATGTATCCAACGGCTCACTGTCTGGAGTTCTTCATGCAGATGCAAGTGATGGTTTTTCTTTATC
CTGGGGCGATTGCTTAAGGATTGCAATCGAAACAGCAGGAGCTCTATCTTATCTCCACTCTTCAGCTTCGATATCAATCT
TCCATCATGATGTGAAGTCCTCAAATATACTCTTAGATGTGAACTACACAGCCAAAGTTTCAGATTTTGGCGCGTCCAGA
TTGGTTCCGATTGATCAGACACACATTGTCACGAATGTGCAAGGTACATTTGGGTACTTAGATCCAGAGTATTTCCATTC
CAGGCAGCTGAACGGGAAGAGCGACGTGTACAGTTTTGGTGTGGTACTAGTGGAGTTGCTTCTCAGAATGAAGCCTGTAT
TTACAAGTGAATCAGGCACAGTCAAAAGTTTGTCAAACTATTTCCTCCAGGAGTTCAATGAGGGAAGAATCACAGATATT
TTTAATTCTCAGGTCCTTGAGGAGGCAACTGAGGAAGAGATCGACAGTGTCGCATCTTTGGCAGACCGGTGCTTGAGGTT
ACATGGCGAAGAAAGACCAACCATGAAACAGGTGGAGACAGAACTACAGACTCTACGGACAAAACGGATGAACTCATCTC
AGCCTGATCTGAGAAATGGAGAACAAATGCAACCAAGGTCATTAACTCGAAGGACTAGATCTGCTCGTCAATCGTTTGCA
CAGCAAGGAGGTAGCCAACGACGCTATAGCATGGAGGCAGAGTTCTTGTCATCTGCTAGCCTACCACGTTAGATGAGGCT
ATTGAGCTTAT--AATAATGGATAATTTTCTTCCCTCTTTTATGAACTGTTGCTAGGACTTGTATT-ACAGGCTAGTTAG
GTCGGTACTGTAATAA-------------GCC---ATGATTTCAGGCATCATGATTATATCAGTTTCTCGGTTGGAATTA
TGCTTGCTGATACTATATGTAGACTGA--ATTTTGTTACCCTGAGATGTGTAGTGAATTGCTGTCATATGCATAGTGTTG
CTGAGAT-----GTCTAGAACAGATGTAGTGGATTATATTAGCAATGATTTTGAGCACTCATGCCGTCTTGTCGT---TG
CCACCGTTAGTACACTGCTGTGTTTTCTTGGCGCTTCTTTTAATAT-AAATATAT-GGTTCGAGTTTTTTCTCTCGGCGC
AAATGTGACAGGCATAAAGATACTTGTTGGGGAAACAGAAGG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr3D_348
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------CTTAAAGAGCTTGATGACTGCAGGTATAATTATTGGGTTGTCTTGTGGATTCGGTGT
TCTACTTCTGAGCTTCAGTGCATCACTTCTCATTCGTAGATGGAAAAGAAATGTTCAAAAGCAACTACGGAAAAAATATT
TCCAGAAGAACCAAGGTCTTCTCCTAGAAACGTTGATATCATCTGATGAAACTCCAAATGAGAATACTAAGATTTTCTCG
GTAGAAGAGCTGGAGAAGGCAACAAACAACTTTGATCCTACACGTATCATTGGACGTGGGGGCCATGGCATGGTTTACAA
AGGCATATTGTCTGATCAGCGTGTTGTTGCAGTAAAAAGGTCTAAGGTCATCGAGCAGTCTGAGATCAGTGAATTCATCA
ATGAGGTCGCAGTCCTTACTCAGATAAACCACAGAAATATTGTCAAGCTCTTTGGATGTTGTCTCAAAACCGAGGTTCCA
CTGCTGGTGTATGATTATGTATCCAGTGGCTCACTGTCTGAAGTTCTTCATGCAGATGCAAGTGAAGGTTTTTCTTTGAC
TTGGGGTGATTACTTAAGGATTGCCCTCGAAACAGCAGGTGCTCTGTCTTATCTCCACTCTTCAGCTTCAATATCAATCT
TCCATCGTGACGTGAAGTCCTCAAATATACTCTTGGATGGGAATTACACAGCTAAAGTTTCAGACTTTGGTGCTTCTAGA
TTGGTTCCAATTGATCAAACACATATTGTTACAAATGTGCAAGGTACATTTGGGTACTTAGATCCAGAGTATTTCCATAC
CAGGCAGCTGAACGGGAAGAGCGACCTGTACAGTTTTGGTGTGGTACTAGTGGAGTTGCTTCTCAGAATGAAGCCTGTAT
TTACAAGTGAATCAGGCACAGTCAAGAGTTTGTCAAACTATTTCCTCCAGGAGTTCAATGAGGGAAGAATCACAGATATC
GCTAATTCTCAGGTCCTTGAGGAGGCAACCGAGGAAGAGATCAATGGTGTTGCCTCTCTTGCAGAGCGGTGCTTGAGGCT
ACACGGCGAAGAAAGACCAACCATGAAACAGGTTGAGACAGAACTGCAGACTCTACGGACAGAACGGATGAACTCATCTC
AGCATGATCTGAGAAATGGAGAACAGATGCAACCAAGGTCGTTAACTCGAATGAGTAGATCTGCTCGGCAATTGTCCGCA
CAGCCAGGAGGTAGCCAACAACGCTATAGCTTGGAGGCAGAGTTCTTGTCATCGGCTAGCCTACCACGCTAGATGAGGCT
ATTGAGCTTATT-AATAACGGATAATTTCTTTCCCTCTTTTGTGAACTGTTGCTAGAACCTGTATTTACAGGCTAGTCAG
ATTGGTACTATAATAT--------------TC---ATGAATTCAGGCATCATGATTGTATCAGTTTCTCGGTTGGAATTA
TGCTTGCTGATAATAT--GTAGACCTG--GTTTTGTTATCTTGAGATGTGTAGTGAATTGTTGTCATATGCATAGTGTTG
CTGAGAT-----GTCTAGAAGAGATGTAGTGGATTATATTAGCAATGATTTTGAGCACTCATGCCATCTTGTCAT---TG
CCACCGTTAGTACATTGCTGTTTTTTCTCGGCGCTTCATTTAATAT-AAATATAT-GGTTCAAGTTTTTCCTCTCACCGC
AAATATGACAGGCATTCAGATACATGTTCGGGAA-CAGAA----------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>chr3A_348
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------CTTAAAGAGCTTGATGACTGCAGGTATAATTATTGGGTTGTCTTGTGGATTCGGTGT
TCTACTTCTGAGCTTCAGTGCATCACTTCTCATTCTTAGATGGAAAATAAATGTTCAAAAGCAACTACGGAAAAAATATT
TCCAGAAGAACCAAGGTCTTCTCCTAGAAACGTTGATATCGTCTGATGAAACTGCAAATGAGAATACTAAGATTTTTTCG
TTAGAAGAGCTAGAGAAGGCAACAAACAACTTCGATCCTACACGTATTATCGGACGTGGGGGCCATGGCATGGTTTACAA
AGGCATAT-GTCTGATCAGTGTGTCGTTGCAGTAAAAAAGTCAAAGGTCATTGAGCAATCTGAGATCAGACAATTCATTA
ATGAGGTCGCAGTCCTCACTCAGATAAATCACAGAAATATTGTGAAGCTCTTTGGATGTTGCCTCGAAACCGAGGTTCCA
CTACTGGTGTATGATTATGTATCCAACGGCTCACTGTCTGAAGTTCTTCATGCCGATGCAAGTGATGGTTTTTCCTTATC
TTGGGGTGATTATTTGAGGATTGCTCTCGAATCAGCAGGAGCTCTATCTTATCTCCATTCTTCAGCTTCAGTATCAATCT
TCCATCGTGACGTGAAGTCCTCAAATATTCTTTTGGATGGGAACTACACAGCTAAAGTTTCTGATTTTGGCGCTTCCAGA
TTGGTTCCAATCGATCAAACACATATTGTCACGAATGTGCAAGGTACATTTGGGTACTTAGATCCAGAGTATTTCCATAC
CAGGCAGCTGAACGGGAAGAGCGACGTGTACAGTTTTGGTGTGGTACTAGTGGAGTTGCTTCTCAGAATGAAGCCTGTAT
TTACATGTGAATCAGGCACAGTCTAAAGTTTGTCAAACTATTTCCTTCAGGAGTTCAATGAGGGAAGAATCACAGATATT
GCTAATTCTCAGGTGCTTGAGGAGGCAACCGAGGAAGAGATCAATGGTGTTGCCTCTCTTGCAGAGCGGTGCTTGAGGCT
ACACGGTGAAGAAAGACCAACCATGAAACAGGTTGAGACAGAACTGCAGACTCTACGGACAAAACGGATGAACTCATCTC
AGCCAGATCCGAGAAGTGGAGAACAGATGCAACCAAGGTCGTTAACTCAAAGGAGTAGATATGCTCGGCAATTATCCGCA
CAGCCAGGAGATAGCCAACGACGCTATAGCTTGGAGGCAGAGTTCTTGTCATCTTCTAGCCTGCCACGGTAGATGAGGCT
ATTGAGCTTATT-AATAATGGATAATTTCTTTCCCTCTTTTGTGAA----------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>chr3D_562
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------TCACAGAAATATTGTGAAGCTCTTTGGATGTTGCCTCGAAACCGAGGTTCCA
CTACTGGTGTATGATTATGTATCCAACGGCTCACTGTCTGAAGTTCTTCATGCAGATGCAAGTGATGGTTTTTCCTTATC
TTGGGGTGATTATTTGAGGATTGCTCTGGAAACAGCAGGAGCTCTATCTTATCTCCACTCTTCAGCTTCAATGTCAATCT
TCCATCGTGACGTGAAATCCTCAAATATACTCTTGGATGTGAACTACACGGCTAAAGTGTCAGATTTTGGTGCGTCCAGA
TTGGTTCCTGTCGATCAAACACATATTGTGACGAACGTGCAAGGTACATTCGGGTACTTAGATCCAGAGTATTTCCATAC
CAGGCAGCTGAACGGGAAGAGCGATGTGTACAGTTGTGGTGTGGTACTAGTGGAGTTGCTTCTCAGAATGAAGCCTATAT
TTACAAGTGAATCAGGCACAGTCAAAAGTTTGTCAAACTATTTCCTCCAGGAGTTCAATGAGGGAAGAATCACAGATATT
GCTAATTCTCAGGTGCTTGAGGAGGCAACAGAGGAAGAGATCAATGGTGTTGCCTCTCTTGCAGAGCGGTGCTTGAGGCT
ACACGGCAAAGAAAGACCAACCATGAAACAGGTTGAGACAGAACTGCAGACTCTACGGGCAAAACGGATGAACTCATCTC
AGCCTGATCCGAGAAATGGAGAACATATGCAACCAAGGTCGTTAACTCAAAGGAGTAGATCTGCTCGGCAATTGTCCGCA
CAGCCAGGTGGTAGCCAACGACGCTATAGCTTGGAGGCAGAGTTCTTGTCATCTGCTAGCCTACCACGCTAGATGAGGCT
ATTGAGCTTATT-AATAATGGATAATTTATTTCCCTCTTTTGTGAACTGTTCCTAGAACCTGTATT-ACAGGCTAGTTAG
GTTGGTACTGTAATAA-------------G------------------TCATGATTTTATCAAATTCTCGGTTGGAATTA
TGCTTGCTG---ATATATGTAGACTAA--ATTTTGTTACCCTGAGATGA-------------------------------
--------------TTAGAAGAGATGTAGTGGATTATATTAGCAATGATTTTG-GCACTCATGCTGTCTTGTCGT---TG
CCGCCATTAG-ACATTGCTGTGTTTTCTCGGCGTTTCTTTTAGTAC-AAATATAT-GGTTCAAGTTTTTTCTCTCGGCGC
AAATATGACAGGCATTCAGATACATGTTCGGGAAACAGAAGG--------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>chr3A_562
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCACAGAAATATCGTGAAGCTCTTTGGATGTTGTCTCGAAACCGAGGTTCCA
CTGTTGGTGTATGACTATGTATCCAGTGGCTCACTGTCTCAGGTTATTCATGCCGATTCAAGCATTGGCCTTTCTTTGTC
TTGGGGTGATTACTTAAGGATTGCCGTAGAAACAGCAGGGGCTCTATCTTATCTCCACTCTTCAGCTTCGATATCAATCT
TCCATCATGATGTGAAGTCCTCAAATATACTCTTAGATGTGAACTACACAGCCAAAGTTTCAGATTTTGGCGCGTCCAGA
TTGGTTCCGATTGATCAGACACACATTGTCACGAATGTGCAAGGTACATTTGGGTACTTAGATCCAGAGTATTTCTATAC
CAGGCAGCTGAACGGGAAGAGCGACGTCTACAGTTTTGGTGTGGTACTAGTGGAGTTGCTTCTCAGAAAGAAGCCTGTTT
TTACAAGTGAATCAGGCACCATCAAGGGCTTGTCAAGCTATTTTCTCCAGGAGTTCAGTGAGGGGAGAATCACGGGTATT
GTTAGTTCCCAGGTCCTAGAGGAGGCAACTGAGGAAGAGATCAACGGTGTCGTCTCTCTTGCAGAGCGGTGCTTAAGTCT
GCGTGGTGAAGAAAGACCCACCATGAAACAGGTGGAGACGGAACTACAGACTCTACGGACAAAACGGATGAACTCATCTC
AGCCTGATCCGAGAAATGGAGAACAGATGCAACCGAGGCCGTTGACTCGAAGGAGTAGATCTTCTCGGCAATCGTCTGTA
CGGCCAGGAGGTAGCCAACGACGCTATAGCTTGGAAGCAGAGTTCTTGTCATCTGCTAGCCTACCACGTTAGATGAGGCT
ATTGAGCTTAT--AATAATGGATAATTTGCTTCCCTCTTTTATGAACTGTTGCTAGAACCTGTATT-ATAGGCTAGTTAG
GTTGGTACTGTAATAA-------------GTC---ATGATTTCAGGCATCATGATTGTATCAGTTTCTCGGTTGAAATTA
TGCTTGCTAATACTATATGTAGACTGA--ATTTTGTTACCCTGAGATGTGTAGTGAATTGCTGTCATATGCATAGTGTTG
CTGAGAT-----GTCTAGAACAGATGTAGTGGATTATATTAGCAATGATTTTGAGCACTCATGCCGTCTTGTCGT---TG
CCACCGTTAGTACACTGCTGTGTTTTCTTGGCGCTTCTTTTAATAC-AAATATAA-GGTTCGAGTTTTTTCTCTCTGTGC
AAATATGACAGGCATTCGTATACATGTTCGGGAAATAGAAGG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr3A_562
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCACAGAAATATTGTGAAGCTCTTTGGATGTTGTCTCGAAACTGAGGTTCCA
CTGCTAGTGTATGATTATGTATCTAGTGGTTCACTATCTGAAGCTCTTCATGCAGATACAAGTAACGATTTTTCTTTGTC
TTGGGGTGATTACTTAAGGATTGCCCTGGAAACAGCAGGAGCTCTATCTTATCTCCATTCTTCAGCTTCAATATCAATCT
TCCATCGTGACGTGAAGTCCTCCAAGATACTCTTGGATGGGAATTACACAGCTAAAGTGTCAGATTTTGGTGCATCCAGA
TTGGTTCCGATCGATCAAACGCACATTGTCACGAATGTGCAGGGTACATTTGGGTACTTAGACCCAGAGTATTTCCATAC
CAGGCAGCTGAATGGGAAGAGCGACGTGTACAGTTTTGGTGTGGTACTGGTGGAGTTGCTTCTCAGAAAGAAGCCTGTTT
TTACAAGTGAATCAGGCACCATCATGGGCTTGTCAAGCTATTTTCTCCAGGAGTACAGTGAGGGGAGAATCACTGGTACT
GTTTGTTCCCAGGTCCTGGAGGAGGCAACTGAGGAAGAGATCAACGGTGTCGCCTCTCTTGCAGAGAGGTGCTTAAGACT
GCATGGCGAGGAAAGACCCACCATGAAACAGGTGGAGACGGAACTGCAGACTCTACGCGCAAAACAGATGGAATCATCTC
AGGCAGATCCGAGGAATGGAGAACAGATGCAACCAAGGTCGTTAACTCAAAGAAGTAGATCTGCTCGGCAATTGTATGCA
CAGCCTGGAGGTAGCCAACGACACTATAGCTTGGAGGCAGAGTTCTTGTCATCTGCTAGCCTACCACGCTAGATGAGGCT
ATTGAGCTTA-TTAATAATGGATAATTTATTTCCCTCTTTTGTGAACTATTGCTAGAACCTGTATT-ACAGGCTAGTTAG
GTTGGTACTGTAATAA-------------GTC---ATGATTTCAGGCATCATGATTGTATCAGTT-CTCGGTTGGAATTA
TGCTTGCTGATA---TATGTAGACTGA--ATTTTGTTACC----------------------------------------
--------------CTAGAAGAGATGTAGTGGATTGTATTAGCAATGTTTT-G-GCACTCATGCTGTCTTGCCGT---TG
CCACCGTTAGTACATTGCTGTGTTTTCTCGACGCTTATTTTAATAC-AAATATAATGGTTCAAGTTTTTCCTCTCGGCGA
AAATATGACAGGCATTCAGATACATGTTCGGGAAACAGAAGG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr3D_564
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAGAAATATAGTAAAGCTATTTGGATGTTGTCTTGAAGCAGAAGTTCCA
TTGCTGGTGTATGATTATGTATCCAGTGGCTCACTGTCTCAAG-------------TTCAAGTGATGGTTTTTCTTTGTC
TTGGGGTGATTACTTAAGGATTGCCCTGGAAATAGCAGGAGCGTTATCTTATGTCCACTCTTCAGCTTCAATATCAATCT
TCCATCGTGACGTGAAATCCTCAAATATACTCTTGGATGTGAACTACACAGCTAAAGTGTCAGATTTTGGCACTTCCAGA
TTGGTTCCAATCGATCAAACACACATTGTCACGAATGTGCAGGGTACATTTGGGTACTTAGAG-CAGAGTATTTCCATAC
CAGGCAGCTGAATGGGAAGAGCGACGTGTACAGTTTTGGTGTGGTACTAGTGGAGTTGCTTCTCAAAATGAAGCATGTCT
TTACAAGTGAATCGGGCATAGTCAAGAGTTTGTCAAACTATTTCCTCCAGGAGTTCAACGAGGGAAGAATCACAGATATT
GCTAATCCTCAAGTGCTTGAGGAGGCAACCGAGGAAGAAATCAATGGTGTCGCCTCTCTTGCAGAGCGGTGCTTGAGGCT
ACACGGCGAAGAAAGACCAACCATGAAACAGGTGGAGACAGAACTGCAGTCTCGGGTAACAAAATGGATGAACTCATCTC
TGGCAGATCCGAGGAATGAAGAACCGATGCAACCAAGCTTGTTAGCTCGAAGGACTAGATCTGCTCGGCAATTGTCTGTA
CGCTCAGGTGGTAGCCAAAGACGCTATAGCTTGGAGGCAGAGTTCTTGTCATGTGCTAGCCTACCACGTTAGATGAGGCT
CTTGAGCTTA-T-AATAATGGATAATTTGTTTCACTCTTTTGTGAACTGTTGCTAGGGCCTGTAT------GCTAGTTAG
ATTGGTATTGTAATAATAAGTCAATTTGTG------------------TCATGATTGTATCAGTTTCTCGGTTGGAAT--
-GCTTGCTT---ATATATGTAGACTGT--ATTTTGTTACCCTGGGATGTG-AGCGAATTGCTGTTATATGTAGTGTGTTG
CTGAGAT-----GTTTATAAGAGATGTAGTG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr3B_635
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------TCCAGTGGCTCACTGTCTAAAGTTCTTCATGCAGATTCAAGTGATGATTTTTCTTTGTC
TTGGGGTGATTACCTAAGGATTGCCCTGGAAAGGGCAGGAGCTCTGTCCTATCTCCACTCTTCAGCTTCAATATCAATCT
TCCACCGTGACGTGAAATCCTCAAATATACTATTGTATGTGAACTACACAGATAAAGTTTCAGATTTTGGTGCCTCCAGA
TTGGTTCCGATCAATCAAACACACATTGTCATGAATGTGCAGGGTACATTTGGGTACTTAGATCCAGAGTATTTCCATAC
CAGGCAGCTGAACGGGAAGAGCGACGTGTACAGTTTTGGTGTGGTACTGGTGGAGTTGCTTCTCAGAATGAAGCCTGTAT
TTACAAGTGAATCAGGCACTGTCAAAAGTTTGTCAAATTATTTTCTGCAGGAGTTCAGTGAAGGGAGAATCACACGTATT
GTTAATTCCATGGTCCTCGAGGAAGCAACCGAGGAAGAGATGAGCACTATCGCCTCACTTGCGGAGCGATGCTTGAAGCT
ACATGGCGAAGAAAGACCAACCGTGAAACAGGTGGAGACAGAACTGCAGACTCTGCTAACAAAACGGATGAACTCATCTC
AGCCTGATCCGAGTAATGGAGAACAAATGCAACCAAGGCCGTTGACTCGAAGGACTAGATCTTTTCGGCAATTGTCTGAA
CGGCCAGGAGGTAGCCAACGATGCTATAGCTTGGAGGCAGAGTTCTTGTCATCTGCTAGCCTACCACGTTAGATGTGGCT
ATTGAGCTTA-TTAATAATGGATAATTTCTTCCCCTCTTTTGTGAACTGTTGCTAGAACCTGTATT-ACAGGCTAGTTAG
GTTGGTACTGTAATAA-------------GTC---AAGATTTCAGGCATCATGATTGTATCAGTTTCTCGGTTGGAATTA
TGATTGCTTATA---TGTGTACACTGG--TTTGAATTACCCAGAGAAATGGAGTGAATTACTAGCATATGCATTGTGTTG
ATGAGATCAATTGTTTATAAGAGATTTAGTGAATTACACTAGCAATGATTTTGAGGGCTCTTATTATTCGCCATTGCATG
CCACCGTTGGTACATTGCTGCGTTTTCTTGGTGCTTCTTTTAATACAAAATATA-TGTTTAATGTTTTTTCTCTTGGCGC
AAATACAAAAGGCATTCAGATGCATGTTGGGGAAACAGAAGG--------------------------------------
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>chr3B_1419
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-----GCTTA-T-AATAATGGATAATTTATTTCCCTCTTTGGTTAAATTTTGCTAGAACCTGTATT-ACGGGGTAGTTAG
ATTGGTACTGTAATAA-------------GTC---ATGATTTCAGGCATCATGGCTGTATCAGTTTCTCGGTTGGAATTA
TTCTTGGTGATA---TATGTAGAATTCTCATTTTGTTACCCTGAGATGTGTAGTGAATTGATGTCATGTGCAGTGTGTTG
CTGACAC-----GTTTATAAGAGATGTAGTGGATTATATTAGCAATGATTTTGAGAACTCATGCTGTCTTGTCGT---TG
CCACCATTAGTACATTCCTGTGTTTTCTCGGCGCTTTTTTTAATAC-AAATATA-TGGTTCAAGTCATTTCTCTCGGCGC
AAATATGACAGGCATGCAGATACATGTTCAGCAAACAGAAGGTGGCTAGGTGCAAATATGAAGGAGAATGCAAATTCAAT
TTTACATGATATCTGAAAGTGTCTAGGTGGAACTCTAAAGGTGTTGGTTATTATAGTTTTCCCATCTATATATGACACTT
TTCACCTGAAATTTGTCTACCGCCAGAGGACGCTCAAGCCAGATCTCTCGATTGTGGGATAAAATCAGCATAATGGACAG
TGGTGGTGCCACTGATCGGCCCAACTTTGCTGGCCTTGCGAAACAGGACTCTCCGCGTCGTTGAAAGAGGAGGCCTTCAA
AGATTTGGATGCATATATAAAAATCATGAGATTGAGCACCATGGGAACAATCTCAGGCATTAGGGAATCTTCAGTTCTGA
TGAATCCAGAGTACAATTTACAGGTGAACCAAAGGAATCAATGTACAGGTGTTCATTTCCTGCTATGTCGTGTACTTGAT
TCTGTAT-TTTAGTTCATCTCCAGTGTTCTTTTTTTAGTACAGATAT---AATTGGGGATGTGTCCATTTACTGTTAGTT
AGCTCAGTCGGAAGCCATCAGTTAGCTTATCTTCCAGTACTGAGACTGAATATTGCCATCCGGAAC
>SNPs
S---SSSSSSSSSSSSSSSSSSSSSS---SS--S-SS-----S------SS--------------S-S--S-S-S-----
----S------S----S---SSSSSSS------------S-S--------------S-----------S-----SSS-SS
S--S------S------------------S-SS-S---------------------------------------------
--------S-----S------S----------------------------------------------------------
------------------------------------S-------------------------------------------
---S---------------------------------------S--------------------S----S----------
---------------S----------------------------------------------SS----------------
------------------------------------------------------------S-------------------
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------------------------S----------------------------------------------S-S------
-----------------------S------------------------------------------------S--S----
-------------S--------------------------------------S---------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
S------------------------------------------------------S-------------------S----
------------------------------S-------------------------------------------------
S----------------------S--------------------------------------------------------
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-------S------------------------------------------------------------------------
---------------------------------------------------------------S----------------
-----------------S------------------------------------------------S-------------
------------------------------SS----------------------------------------S-------
-------------------------------------------------S--S---------------------------
---------------SS--S----S---S--------------------------------S------------------
--------------------------S-----------------------------------------------------
--------------------------------------S-----------------------------------------
------------------------------------S-----------S------------------------------S
-------S-----------------------S----SSSSS-SSSSSSSS------------S-----------------
--------SS--------S-----------------S--S-S-S---S---------S--S-S-S-
>forward_357
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------------------GTGGCAGGACAAAACAGCC-------------------------------------------
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>reverse_2018
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-----------------GTGTGTTTTCTCGGCGCTTT-------------------------------------------
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------------------------------------------------------------------
