Multiple sequence alignment - TraesCS3D01G524000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G524000 chr3D 100.000 2714 0 0 1 2714 604302225 604304938 0.000000e+00 5012.0
1 TraesCS3D01G524000 chr3D 87.037 270 19 10 2118 2382 394066676 394066418 9.510000e-75 291.0
2 TraesCS3D01G524000 chr3D 95.082 61 2 1 2443 2503 394066419 394066360 8.000000e-16 95.3
3 TraesCS3D01G524000 chrUn 88.065 1550 106 35 569 2073 42212077 42210562 0.000000e+00 1764.0
4 TraesCS3D01G524000 chrUn 88.839 672 60 8 2042 2701 42210559 42209891 0.000000e+00 811.0
5 TraesCS3D01G524000 chrUn 91.481 270 21 2 269 538 364048990 364049257 1.190000e-98 370.0
6 TraesCS3D01G524000 chr3A 91.873 1292 52 27 780 2046 733964104 733965367 0.000000e+00 1755.0
7 TraesCS3D01G524000 chr3A 88.462 338 36 3 2355 2690 733965886 733966222 3.250000e-109 405.0
8 TraesCS3D01G524000 chr3A 85.281 231 30 2 2129 2358 733965386 733965613 4.520000e-58 235.0
9 TraesCS3D01G524000 chr3A 92.800 125 9 0 69 193 733963922 733964046 5.970000e-42 182.0
10 TraesCS3D01G524000 chr3A 95.833 48 2 0 1 48 733963891 733963938 8.060000e-11 78.7
11 TraesCS3D01G524000 chr7D 95.203 271 12 1 269 539 30247546 30247815 6.940000e-116 427.0
12 TraesCS3D01G524000 chr7D 95.203 271 12 1 269 539 30263488 30263757 6.940000e-116 427.0
13 TraesCS3D01G524000 chr7D 83.588 262 39 3 2442 2700 506663233 506662973 2.700000e-60 243.0
14 TraesCS3D01G524000 chr7D 80.435 276 50 3 2428 2700 506641949 506641675 9.850000e-50 207.0
15 TraesCS3D01G524000 chr1D 95.203 271 12 1 269 539 1835412 1835681 6.940000e-116 427.0
16 TraesCS3D01G524000 chr1D 94.465 271 14 1 269 539 408882338 408882607 1.500000e-112 416.0
17 TraesCS3D01G524000 chr1D 93.818 275 15 2 265 539 1828573 1828845 1.940000e-111 412.0
18 TraesCS3D01G524000 chr1D 93.727 271 16 1 269 539 346185184 346185453 3.250000e-109 405.0
19 TraesCS3D01G524000 chr1D 86.905 84 6 4 1340 1422 408519124 408519203 3.720000e-14 89.8
20 TraesCS3D01G524000 chr2D 94.853 272 13 1 268 539 614385460 614385730 8.980000e-115 424.0
21 TraesCS3D01G524000 chr2D 94.485 272 14 1 269 540 614392634 614392904 4.180000e-113 418.0
22 TraesCS3D01G524000 chr4A 85.911 291 28 9 1755 2040 201600472 201600754 5.680000e-77 298.0
23 TraesCS3D01G524000 chr4A 87.356 87 6 4 1340 1425 743713035 743712953 8.000000e-16 95.3
24 TraesCS3D01G524000 chr2A 87.037 270 19 11 2118 2382 718254750 718255008 9.510000e-75 291.0
25 TraesCS3D01G524000 chr1B 87.037 270 19 11 2118 2382 155427967 155427709 9.510000e-75 291.0
26 TraesCS3D01G524000 chr1B 87.037 270 19 11 2118 2382 155695935 155696193 9.510000e-75 291.0
27 TraesCS3D01G524000 chr1B 87.500 184 18 4 1860 2040 325984893 325984712 9.850000e-50 207.0
28 TraesCS3D01G524000 chr5B 86.667 270 20 11 2118 2382 467178555 467178813 4.420000e-73 285.0
29 TraesCS3D01G524000 chr5B 90.789 76 4 2 1350 1425 693923670 693923598 6.180000e-17 99.0
30 TraesCS3D01G524000 chr5B 95.082 61 2 1 2443 2503 467178812 467178871 8.000000e-16 95.3
31 TraesCS3D01G524000 chr7B 84.191 272 25 11 2118 2382 474731136 474731396 5.800000e-62 248.0
32 TraesCS3D01G524000 chr7B 83.128 243 37 3 2461 2700 534820037 534819796 4.550000e-53 219.0
33 TraesCS3D01G524000 chr7B 83.436 163 25 2 2428 2589 534821638 534821477 1.680000e-32 150.0
34 TraesCS3D01G524000 chr7A 82.129 263 41 5 2442 2700 574087939 574087679 1.270000e-53 220.0
35 TraesCS3D01G524000 chr7A 79.752 242 39 5 2461 2700 574086254 574086021 1.670000e-37 167.0
36 TraesCS3D01G524000 chr7A 93.617 47 2 1 3 48 30084405 30084451 4.850000e-08 69.4
37 TraesCS3D01G524000 chr7A 93.617 47 2 1 3 48 30642607 30642561 4.850000e-08 69.4
38 TraesCS3D01G524000 chr7A 93.617 47 2 1 3 48 89952806 89952852 4.850000e-08 69.4
39 TraesCS3D01G524000 chr7A 93.617 47 2 1 3 48 89960254 89960300 4.850000e-08 69.4
40 TraesCS3D01G524000 chr2B 86.408 206 19 6 2184 2387 247941518 247941320 1.640000e-52 217.0
41 TraesCS3D01G524000 chr4D 86.207 87 7 4 1340 1425 486439075 486438993 3.720000e-14 89.8
42 TraesCS3D01G524000 chr4B 86.207 87 7 4 1340 1425 370708797 370708715 3.720000e-14 89.8
43 TraesCS3D01G524000 chr4B 86.905 84 6 4 1340 1422 580963744 580963823 3.720000e-14 89.8
44 TraesCS3D01G524000 chr1A 86.207 87 7 4 1340 1425 564330049 564329967 3.720000e-14 89.8
45 TraesCS3D01G524000 chr1A 93.617 47 2 1 3 48 473965307 473965261 4.850000e-08 69.4
46 TraesCS3D01G524000 chr3B 77.099 131 28 1 2528 2656 756262011 756261881 1.040000e-09 75.0
47 TraesCS3D01G524000 chr6B 93.617 47 2 1 3 48 707168011 707168057 4.850000e-08 69.4
48 TraesCS3D01G524000 chr6B 93.617 47 2 1 3 48 707173537 707173583 4.850000e-08 69.4
49 TraesCS3D01G524000 chr6B 93.617 47 2 1 3 48 716525310 716525264 4.850000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G524000 chr3D 604302225 604304938 2713 False 5012.00 5012 100.0000 1 2714 1 chr3D.!!$F1 2713
1 TraesCS3D01G524000 chrUn 42209891 42212077 2186 True 1287.50 1764 88.4520 569 2701 2 chrUn.!!$R1 2132
2 TraesCS3D01G524000 chr3A 733963891 733966222 2331 False 531.14 1755 90.8498 1 2690 5 chr3A.!!$F1 2689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 466 0.09473 GCATGTAAACACGACGGCTC 59.905 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 2845 0.464735 CCAACAAGAACACGTCCCCA 60.465 55.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.593128 GCGTGCATGGAGTTTCAGTT 59.407 50.000 8.27 0.00 0.00 3.16
40 41 4.465632 TTGTTACGTGACAGGATATGCT 57.534 40.909 13.22 0.00 0.00 3.79
41 42 4.041740 TGTTACGTGACAGGATATGCTC 57.958 45.455 9.37 0.00 0.00 4.26
42 43 3.445805 TGTTACGTGACAGGATATGCTCA 59.554 43.478 9.37 0.00 0.00 4.26
43 44 4.081917 TGTTACGTGACAGGATATGCTCAA 60.082 41.667 9.37 0.00 0.00 3.02
44 45 3.170791 ACGTGACAGGATATGCTCAAG 57.829 47.619 1.39 0.00 0.00 3.02
45 46 1.863454 CGTGACAGGATATGCTCAAGC 59.137 52.381 0.00 0.00 42.50 4.01
54 55 4.970392 TGCTCAAGCATTTTGCCG 57.030 50.000 0.00 0.00 46.52 5.69
55 56 1.373246 TGCTCAAGCATTTTGCCGC 60.373 52.632 0.00 0.00 46.52 6.53
56 57 1.373246 GCTCAAGCATTTTGCCGCA 60.373 52.632 0.00 0.00 46.52 5.69
57 58 0.945265 GCTCAAGCATTTTGCCGCAA 60.945 50.000 0.38 0.38 46.52 4.85
58 59 1.500108 CTCAAGCATTTTGCCGCAAA 58.500 45.000 14.60 14.60 46.52 3.68
59 60 1.865970 CTCAAGCATTTTGCCGCAAAA 59.134 42.857 28.51 28.51 46.52 2.44
60 61 2.283298 TCAAGCATTTTGCCGCAAAAA 58.717 38.095 29.65 16.37 46.52 1.94
136 137 4.771577 TGTGTCCATGCAATATTTCCAACT 59.228 37.500 0.00 0.00 0.00 3.16
154 155 5.309543 TCCAACTCATTTCTGTTCCCTAAGA 59.690 40.000 0.00 0.00 0.00 2.10
155 156 5.645497 CCAACTCATTTCTGTTCCCTAAGAG 59.355 44.000 0.00 0.00 0.00 2.85
158 159 7.741554 ACTCATTTCTGTTCCCTAAGAGTAT 57.258 36.000 0.00 0.00 32.58 2.12
168 169 3.512329 TCCCTAAGAGTATGAAACACGCA 59.488 43.478 0.00 0.00 0.00 5.24
199 200 5.710513 TGCAGTGCATAGATTTGAGTTTT 57.289 34.783 15.37 0.00 31.71 2.43
200 201 5.702865 TGCAGTGCATAGATTTGAGTTTTC 58.297 37.500 15.37 0.00 31.71 2.29
201 202 5.098211 GCAGTGCATAGATTTGAGTTTTCC 58.902 41.667 11.09 0.00 0.00 3.13
203 204 6.571150 GCAGTGCATAGATTTGAGTTTTCCTT 60.571 38.462 11.09 0.00 0.00 3.36
205 206 7.869429 CAGTGCATAGATTTGAGTTTTCCTTTT 59.131 33.333 0.00 0.00 0.00 2.27
206 207 8.424133 AGTGCATAGATTTGAGTTTTCCTTTTT 58.576 29.630 0.00 0.00 0.00 1.94
240 241 9.553064 AGGAGTACTTCTTAAGCATGAAATATG 57.447 33.333 0.00 0.00 0.00 1.78
241 242 9.331282 GGAGTACTTCTTAAGCATGAAATATGT 57.669 33.333 0.00 0.00 0.00 2.29
249 250 9.547753 TCTTAAGCATGAAATATGTTCTACTCC 57.452 33.333 0.00 0.00 0.00 3.85
250 251 8.677148 TTAAGCATGAAATATGTTCTACTCCC 57.323 34.615 0.00 0.00 0.00 4.30
251 252 6.506538 AGCATGAAATATGTTCTACTCCCT 57.493 37.500 0.00 0.00 0.00 4.20
252 253 6.529220 AGCATGAAATATGTTCTACTCCCTC 58.471 40.000 0.00 0.00 0.00 4.30
253 254 6.100279 AGCATGAAATATGTTCTACTCCCTCA 59.900 38.462 0.00 0.00 0.00 3.86
254 255 6.426328 GCATGAAATATGTTCTACTCCCTCAG 59.574 42.308 0.00 0.00 0.00 3.35
255 256 7.504403 CATGAAATATGTTCTACTCCCTCAGT 58.496 38.462 0.00 0.00 39.41 3.41
256 257 7.496346 TGAAATATGTTCTACTCCCTCAGTT 57.504 36.000 0.00 0.00 36.43 3.16
257 258 7.918076 TGAAATATGTTCTACTCCCTCAGTTT 58.082 34.615 0.00 0.00 36.43 2.66
258 259 7.824289 TGAAATATGTTCTACTCCCTCAGTTTG 59.176 37.037 0.00 0.00 36.43 2.93
259 260 4.559862 ATGTTCTACTCCCTCAGTTTGG 57.440 45.455 0.00 0.00 36.43 3.28
260 261 3.583228 TGTTCTACTCCCTCAGTTTGGA 58.417 45.455 0.00 0.00 36.43 3.53
261 262 3.971305 TGTTCTACTCCCTCAGTTTGGAA 59.029 43.478 0.00 0.00 36.43 3.53
262 263 4.597507 TGTTCTACTCCCTCAGTTTGGAAT 59.402 41.667 0.00 0.00 36.43 3.01
263 264 5.073144 TGTTCTACTCCCTCAGTTTGGAATT 59.927 40.000 0.00 0.00 36.43 2.17
264 265 5.843019 TCTACTCCCTCAGTTTGGAATTT 57.157 39.130 0.00 0.00 36.43 1.82
265 266 6.200878 TCTACTCCCTCAGTTTGGAATTTT 57.799 37.500 0.00 0.00 36.43 1.82
266 267 6.238648 TCTACTCCCTCAGTTTGGAATTTTC 58.761 40.000 0.00 0.00 36.43 2.29
267 268 5.066913 ACTCCCTCAGTTTGGAATTTTCT 57.933 39.130 0.00 0.00 26.56 2.52
268 269 5.458595 ACTCCCTCAGTTTGGAATTTTCTT 58.541 37.500 0.00 0.00 26.56 2.52
269 270 5.302823 ACTCCCTCAGTTTGGAATTTTCTTG 59.697 40.000 0.00 0.00 26.56 3.02
270 271 5.208121 TCCCTCAGTTTGGAATTTTCTTGT 58.792 37.500 0.00 0.00 0.00 3.16
271 272 5.660864 TCCCTCAGTTTGGAATTTTCTTGTT 59.339 36.000 0.00 0.00 0.00 2.83
272 273 6.836527 TCCCTCAGTTTGGAATTTTCTTGTTA 59.163 34.615 0.00 0.00 0.00 2.41
273 274 7.014230 TCCCTCAGTTTGGAATTTTCTTGTTAG 59.986 37.037 0.00 0.00 0.00 2.34
274 275 7.147976 CCTCAGTTTGGAATTTTCTTGTTAGG 58.852 38.462 0.00 0.00 0.00 2.69
275 276 7.014230 CCTCAGTTTGGAATTTTCTTGTTAGGA 59.986 37.037 0.00 0.00 0.00 2.94
276 277 8.299990 TCAGTTTGGAATTTTCTTGTTAGGAA 57.700 30.769 0.00 0.00 0.00 3.36
277 278 8.923270 TCAGTTTGGAATTTTCTTGTTAGGAAT 58.077 29.630 0.00 0.00 0.00 3.01
332 333 9.965748 GCGATTAGCAGATTCTTTAGAATATTC 57.034 33.333 7.41 7.41 44.18 1.75
338 339 9.482627 AGCAGATTCTTTAGAATATTCTAACCG 57.517 33.333 29.34 23.50 46.28 4.44
339 340 8.713271 GCAGATTCTTTAGAATATTCTAACCGG 58.287 37.037 29.34 22.49 46.28 5.28
340 341 9.765795 CAGATTCTTTAGAATATTCTAACCGGT 57.234 33.333 29.34 18.94 46.28 5.28
355 356 1.761198 ACCGGTAGTTAGAATCCTGGC 59.239 52.381 4.49 0.00 0.00 4.85
356 357 1.269621 CCGGTAGTTAGAATCCTGGCG 60.270 57.143 0.00 0.00 0.00 5.69
357 358 1.407979 CGGTAGTTAGAATCCTGGCGT 59.592 52.381 0.00 0.00 0.00 5.68
358 359 2.159142 CGGTAGTTAGAATCCTGGCGTT 60.159 50.000 0.00 0.00 0.00 4.84
359 360 3.195661 GGTAGTTAGAATCCTGGCGTTG 58.804 50.000 0.00 0.00 0.00 4.10
360 361 3.369157 GGTAGTTAGAATCCTGGCGTTGT 60.369 47.826 0.00 0.00 0.00 3.32
361 362 2.973945 AGTTAGAATCCTGGCGTTGTC 58.026 47.619 0.00 0.00 0.00 3.18
362 363 2.007608 GTTAGAATCCTGGCGTTGTCC 58.992 52.381 0.00 0.00 0.00 4.02
363 364 1.271856 TAGAATCCTGGCGTTGTCCA 58.728 50.000 0.00 0.00 34.42 4.02
397 398 2.346099 CGAACCATCGCCATGTTTTT 57.654 45.000 0.00 0.00 42.96 1.94
415 416 3.305398 TTTTTCAAACCAGCGTTGTGT 57.695 38.095 0.00 0.00 30.72 3.72
416 417 2.553079 TTTCAAACCAGCGTTGTGTC 57.447 45.000 0.00 0.00 30.72 3.67
417 418 1.745232 TTCAAACCAGCGTTGTGTCT 58.255 45.000 0.00 0.00 30.72 3.41
418 419 1.745232 TCAAACCAGCGTTGTGTCTT 58.255 45.000 0.00 0.00 30.72 3.01
419 420 2.088423 TCAAACCAGCGTTGTGTCTTT 58.912 42.857 0.00 0.00 30.72 2.52
420 421 2.096819 TCAAACCAGCGTTGTGTCTTTC 59.903 45.455 0.00 0.00 30.72 2.62
421 422 1.021968 AACCAGCGTTGTGTCTTTCC 58.978 50.000 0.00 0.00 0.00 3.13
422 423 1.157870 ACCAGCGTTGTGTCTTTCCG 61.158 55.000 0.00 0.00 0.00 4.30
423 424 0.878523 CCAGCGTTGTGTCTTTCCGA 60.879 55.000 0.00 0.00 0.00 4.55
424 425 0.934496 CAGCGTTGTGTCTTTCCGAA 59.066 50.000 0.00 0.00 0.00 4.30
425 426 1.329292 CAGCGTTGTGTCTTTCCGAAA 59.671 47.619 0.00 0.00 0.00 3.46
426 427 1.329599 AGCGTTGTGTCTTTCCGAAAC 59.670 47.619 0.00 0.00 0.00 2.78
427 428 1.914257 GCGTTGTGTCTTTCCGAAACG 60.914 52.381 0.00 0.00 42.30 3.60
428 429 1.589320 CGTTGTGTCTTTCCGAAACGA 59.411 47.619 0.00 0.00 42.06 3.85
429 430 2.595881 CGTTGTGTCTTTCCGAAACGAC 60.596 50.000 12.72 12.72 42.06 4.34
430 431 1.202203 TGTGTCTTTCCGAAACGACG 58.798 50.000 13.84 0.00 32.13 5.12
431 432 0.111398 GTGTCTTTCCGAAACGACGC 60.111 55.000 15.16 15.16 0.00 5.19
432 433 1.127225 GTCTTTCCGAAACGACGCG 59.873 57.895 3.53 3.53 0.00 6.01
433 434 1.008652 TCTTTCCGAAACGACGCGA 60.009 52.632 15.93 0.00 0.00 5.87
434 435 0.594540 TCTTTCCGAAACGACGCGAA 60.595 50.000 15.93 0.00 0.00 4.70
435 436 0.448379 CTTTCCGAAACGACGCGAAC 60.448 55.000 15.93 5.44 0.00 3.95
436 437 1.820233 TTTCCGAAACGACGCGAACC 61.820 55.000 15.93 0.00 0.00 3.62
437 438 2.682256 TTCCGAAACGACGCGAACCT 62.682 55.000 15.93 0.00 0.00 3.50
438 439 2.305127 CCGAAACGACGCGAACCTT 61.305 57.895 15.93 0.00 0.00 3.50
439 440 1.154908 CGAAACGACGCGAACCTTG 60.155 57.895 15.93 0.00 0.00 3.61
440 441 1.814211 CGAAACGACGCGAACCTTGT 61.814 55.000 15.93 0.00 0.00 3.16
441 442 1.130955 GAAACGACGCGAACCTTGTA 58.869 50.000 15.93 0.00 0.00 2.41
442 443 1.522258 GAAACGACGCGAACCTTGTAA 59.478 47.619 15.93 0.00 0.00 2.41
443 444 1.787012 AACGACGCGAACCTTGTAAT 58.213 45.000 15.93 0.00 0.00 1.89
444 445 1.343506 ACGACGCGAACCTTGTAATC 58.656 50.000 15.93 0.00 0.00 1.75
445 446 0.293723 CGACGCGAACCTTGTAATCG 59.706 55.000 15.93 3.07 39.47 3.34
446 447 0.643820 GACGCGAACCTTGTAATCGG 59.356 55.000 15.93 0.00 37.08 4.18
447 448 1.347221 CGCGAACCTTGTAATCGGC 59.653 57.895 0.00 0.00 37.08 5.54
448 449 1.355796 CGCGAACCTTGTAATCGGCA 61.356 55.000 0.00 0.00 37.08 5.69
449 450 1.014352 GCGAACCTTGTAATCGGCAT 58.986 50.000 0.00 0.00 37.08 4.40
450 451 1.268032 GCGAACCTTGTAATCGGCATG 60.268 52.381 0.00 0.00 37.08 4.06
451 452 2.006888 CGAACCTTGTAATCGGCATGT 58.993 47.619 0.00 0.00 33.15 3.21
452 453 3.191669 CGAACCTTGTAATCGGCATGTA 58.808 45.455 0.00 0.00 33.15 2.29
453 454 3.619483 CGAACCTTGTAATCGGCATGTAA 59.381 43.478 0.00 0.00 33.15 2.41
454 455 4.093703 CGAACCTTGTAATCGGCATGTAAA 59.906 41.667 0.00 0.00 33.15 2.01
455 456 4.957759 ACCTTGTAATCGGCATGTAAAC 57.042 40.909 0.00 0.00 0.00 2.01
456 457 4.328536 ACCTTGTAATCGGCATGTAAACA 58.671 39.130 0.00 0.00 0.00 2.83
457 458 4.155280 ACCTTGTAATCGGCATGTAAACAC 59.845 41.667 0.00 0.00 0.00 3.32
458 459 4.329296 TTGTAATCGGCATGTAAACACG 57.671 40.909 0.00 0.00 0.00 4.49
459 460 3.586892 TGTAATCGGCATGTAAACACGA 58.413 40.909 0.00 0.00 38.00 4.35
460 461 3.368539 TGTAATCGGCATGTAAACACGAC 59.631 43.478 0.00 0.00 36.32 4.34
461 462 0.996462 ATCGGCATGTAAACACGACG 59.004 50.000 0.00 0.00 36.32 5.12
462 463 1.009903 TCGGCATGTAAACACGACGG 61.010 55.000 4.45 0.00 0.00 4.79
463 464 1.133869 GGCATGTAAACACGACGGC 59.866 57.895 0.00 0.00 0.00 5.68
464 465 1.296056 GGCATGTAAACACGACGGCT 61.296 55.000 0.00 0.00 0.00 5.52
465 466 0.094730 GCATGTAAACACGACGGCTC 59.905 55.000 0.00 0.00 0.00 4.70
466 467 0.365523 CATGTAAACACGACGGCTCG 59.634 55.000 0.00 5.08 46.06 5.03
467 468 0.734942 ATGTAAACACGACGGCTCGG 60.735 55.000 0.00 3.46 44.80 4.63
473 474 2.438975 ACGACGGCTCGGGACATA 60.439 61.111 0.00 0.00 44.80 2.29
474 475 1.826921 ACGACGGCTCGGGACATAT 60.827 57.895 0.00 0.00 44.80 1.78
475 476 0.535780 ACGACGGCTCGGGACATATA 60.536 55.000 0.00 0.00 44.80 0.86
476 477 0.594602 CGACGGCTCGGGACATATAA 59.405 55.000 0.00 0.00 36.16 0.98
477 478 1.401148 CGACGGCTCGGGACATATAAG 60.401 57.143 0.00 0.00 36.16 1.73
478 479 1.612463 GACGGCTCGGGACATATAAGT 59.388 52.381 0.00 0.00 0.00 2.24
479 480 2.816087 GACGGCTCGGGACATATAAGTA 59.184 50.000 0.00 0.00 0.00 2.24
480 481 2.555757 ACGGCTCGGGACATATAAGTAC 59.444 50.000 0.00 0.00 0.00 2.73
481 482 2.094854 CGGCTCGGGACATATAAGTACC 60.095 54.545 0.00 0.00 39.26 3.34
482 483 3.163467 GGCTCGGGACATATAAGTACCT 58.837 50.000 7.74 0.00 40.58 3.08
483 484 3.056749 GGCTCGGGACATATAAGTACCTG 60.057 52.174 7.74 2.04 40.58 4.00
484 485 3.614390 GCTCGGGACATATAAGTACCTGC 60.614 52.174 7.74 7.87 40.58 4.85
485 486 3.568443 TCGGGACATATAAGTACCTGCA 58.432 45.455 7.74 0.00 40.58 4.41
486 487 3.572682 TCGGGACATATAAGTACCTGCAG 59.427 47.826 6.78 6.78 40.58 4.41
487 488 3.321111 CGGGACATATAAGTACCTGCAGT 59.679 47.826 13.81 3.45 40.58 4.40
488 489 4.558898 CGGGACATATAAGTACCTGCAGTC 60.559 50.000 13.81 2.83 40.58 3.51
489 490 4.344102 GGGACATATAAGTACCTGCAGTCA 59.656 45.833 13.81 0.00 39.56 3.41
490 491 5.290386 GGACATATAAGTACCTGCAGTCAC 58.710 45.833 13.81 9.82 0.00 3.67
491 492 5.069251 GGACATATAAGTACCTGCAGTCACT 59.931 44.000 13.81 12.06 0.00 3.41
492 493 6.264744 GGACATATAAGTACCTGCAGTCACTA 59.735 42.308 13.81 1.02 0.00 2.74
493 494 7.039644 GGACATATAAGTACCTGCAGTCACTAT 60.040 40.741 13.81 10.96 0.00 2.12
494 495 7.887381 ACATATAAGTACCTGCAGTCACTATC 58.113 38.462 13.81 0.00 0.00 2.08
495 496 7.505923 ACATATAAGTACCTGCAGTCACTATCA 59.494 37.037 13.81 4.94 0.00 2.15
496 497 6.791867 ATAAGTACCTGCAGTCACTATCAA 57.208 37.500 13.81 3.03 0.00 2.57
497 498 5.683876 AAGTACCTGCAGTCACTATCAAT 57.316 39.130 13.81 0.00 0.00 2.57
498 499 5.016051 AGTACCTGCAGTCACTATCAATG 57.984 43.478 13.81 0.00 0.00 2.82
499 500 4.711846 AGTACCTGCAGTCACTATCAATGA 59.288 41.667 13.81 0.00 0.00 2.57
500 501 4.558226 ACCTGCAGTCACTATCAATGAA 57.442 40.909 13.81 0.00 0.00 2.57
501 502 4.910195 ACCTGCAGTCACTATCAATGAAA 58.090 39.130 13.81 0.00 0.00 2.69
502 503 5.503927 ACCTGCAGTCACTATCAATGAAAT 58.496 37.500 13.81 0.00 0.00 2.17
503 504 5.587844 ACCTGCAGTCACTATCAATGAAATC 59.412 40.000 13.81 0.00 0.00 2.17
504 505 5.587443 CCTGCAGTCACTATCAATGAAATCA 59.413 40.000 13.81 0.00 0.00 2.57
505 506 6.094464 CCTGCAGTCACTATCAATGAAATCAA 59.906 38.462 13.81 0.00 0.00 2.57
506 507 7.201794 CCTGCAGTCACTATCAATGAAATCAAT 60.202 37.037 13.81 0.00 0.00 2.57
507 508 7.700505 TGCAGTCACTATCAATGAAATCAATC 58.299 34.615 0.00 0.00 0.00 2.67
508 509 7.137426 GCAGTCACTATCAATGAAATCAATCC 58.863 38.462 0.00 0.00 0.00 3.01
509 510 7.013083 GCAGTCACTATCAATGAAATCAATCCT 59.987 37.037 0.00 0.00 0.00 3.24
510 511 8.900781 CAGTCACTATCAATGAAATCAATCCTT 58.099 33.333 0.00 0.00 0.00 3.36
511 512 9.471702 AGTCACTATCAATGAAATCAATCCTTT 57.528 29.630 0.00 0.00 0.00 3.11
512 513 9.727627 GTCACTATCAATGAAATCAATCCTTTC 57.272 33.333 0.00 0.00 34.02 2.62
513 514 9.465199 TCACTATCAATGAAATCAATCCTTTCA 57.535 29.630 1.41 1.41 44.28 2.69
514 515 9.512435 CACTATCAATGAAATCAATCCTTTCAC 57.488 33.333 0.96 0.00 43.31 3.18
515 516 9.471702 ACTATCAATGAAATCAATCCTTTCACT 57.528 29.630 0.96 0.00 43.31 3.41
518 519 8.180706 TCAATGAAATCAATCCTTTCACTTCA 57.819 30.769 0.96 0.00 43.31 3.02
519 520 8.640651 TCAATGAAATCAATCCTTTCACTTCAA 58.359 29.630 0.96 0.00 43.31 2.69
520 521 9.431887 CAATGAAATCAATCCTTTCACTTCAAT 57.568 29.630 0.96 0.00 43.31 2.57
521 522 9.649167 AATGAAATCAATCCTTTCACTTCAATC 57.351 29.630 0.96 0.00 43.31 2.67
522 523 8.413309 TGAAATCAATCCTTTCACTTCAATCT 57.587 30.769 0.00 0.00 37.61 2.40
523 524 8.863086 TGAAATCAATCCTTTCACTTCAATCTT 58.137 29.630 0.00 0.00 37.61 2.40
524 525 9.702494 GAAATCAATCCTTTCACTTCAATCTTT 57.298 29.630 0.00 0.00 33.70 2.52
525 526 9.702494 AAATCAATCCTTTCACTTCAATCTTTC 57.298 29.630 0.00 0.00 0.00 2.62
526 527 8.647256 ATCAATCCTTTCACTTCAATCTTTCT 57.353 30.769 0.00 0.00 0.00 2.52
527 528 8.469309 TCAATCCTTTCACTTCAATCTTTCTT 57.531 30.769 0.00 0.00 0.00 2.52
528 529 8.355169 TCAATCCTTTCACTTCAATCTTTCTTG 58.645 33.333 0.00 0.00 0.00 3.02
529 530 7.830099 ATCCTTTCACTTCAATCTTTCTTGT 57.170 32.000 0.00 0.00 0.00 3.16
530 531 7.645058 TCCTTTCACTTCAATCTTTCTTGTT 57.355 32.000 0.00 0.00 0.00 2.83
531 532 8.066612 TCCTTTCACTTCAATCTTTCTTGTTT 57.933 30.769 0.00 0.00 0.00 2.83
532 533 8.190784 TCCTTTCACTTCAATCTTTCTTGTTTC 58.809 33.333 0.00 0.00 0.00 2.78
533 534 8.193438 CCTTTCACTTCAATCTTTCTTGTTTCT 58.807 33.333 0.00 0.00 0.00 2.52
534 535 9.230932 CTTTCACTTCAATCTTTCTTGTTTCTC 57.769 33.333 0.00 0.00 0.00 2.87
535 536 8.511604 TTCACTTCAATCTTTCTTGTTTCTCT 57.488 30.769 0.00 0.00 0.00 3.10
536 537 8.511604 TCACTTCAATCTTTCTTGTTTCTCTT 57.488 30.769 0.00 0.00 0.00 2.85
537 538 8.616076 TCACTTCAATCTTTCTTGTTTCTCTTC 58.384 33.333 0.00 0.00 0.00 2.87
538 539 8.400947 CACTTCAATCTTTCTTGTTTCTCTTCA 58.599 33.333 0.00 0.00 0.00 3.02
539 540 9.129532 ACTTCAATCTTTCTTGTTTCTCTTCAT 57.870 29.630 0.00 0.00 0.00 2.57
540 541 9.962783 CTTCAATCTTTCTTGTTTCTCTTCATT 57.037 29.630 0.00 0.00 0.00 2.57
542 543 9.956720 TCAATCTTTCTTGTTTCTCTTCATTTC 57.043 29.630 0.00 0.00 0.00 2.17
543 544 9.962783 CAATCTTTCTTGTTTCTCTTCATTTCT 57.037 29.630 0.00 0.00 0.00 2.52
545 546 8.737168 TCTTTCTTGTTTCTCTTCATTTCTCA 57.263 30.769 0.00 0.00 0.00 3.27
546 547 9.347240 TCTTTCTTGTTTCTCTTCATTTCTCAT 57.653 29.630 0.00 0.00 0.00 2.90
547 548 9.609950 CTTTCTTGTTTCTCTTCATTTCTCATC 57.390 33.333 0.00 0.00 0.00 2.92
548 549 8.915057 TTCTTGTTTCTCTTCATTTCTCATCT 57.085 30.769 0.00 0.00 0.00 2.90
555 556 8.654230 TTCTCTTCATTTCTCATCTATTTCCG 57.346 34.615 0.00 0.00 0.00 4.30
556 557 7.786030 TCTCTTCATTTCTCATCTATTTCCGT 58.214 34.615 0.00 0.00 0.00 4.69
557 558 7.708322 TCTCTTCATTTCTCATCTATTTCCGTG 59.292 37.037 0.00 0.00 0.00 4.94
558 559 7.555965 TCTTCATTTCTCATCTATTTCCGTGA 58.444 34.615 0.00 0.00 0.00 4.35
559 560 7.492669 TCTTCATTTCTCATCTATTTCCGTGAC 59.507 37.037 0.00 0.00 0.00 3.67
560 561 6.639563 TCATTTCTCATCTATTTCCGTGACA 58.360 36.000 0.00 0.00 0.00 3.58
561 562 7.102993 TCATTTCTCATCTATTTCCGTGACAA 58.897 34.615 0.00 0.00 0.00 3.18
562 563 6.968131 TTTCTCATCTATTTCCGTGACAAG 57.032 37.500 0.00 0.00 0.00 3.16
563 564 5.661056 TCTCATCTATTTCCGTGACAAGT 57.339 39.130 0.00 0.00 0.00 3.16
564 565 6.769134 TCTCATCTATTTCCGTGACAAGTA 57.231 37.500 0.00 0.00 0.00 2.24
565 566 7.165460 TCTCATCTATTTCCGTGACAAGTAA 57.835 36.000 0.00 0.00 0.00 2.24
566 567 7.782049 TCTCATCTATTTCCGTGACAAGTAAT 58.218 34.615 0.00 0.00 0.00 1.89
567 568 8.258007 TCTCATCTATTTCCGTGACAAGTAATT 58.742 33.333 0.00 0.00 0.00 1.40
568 569 8.196802 TCATCTATTTCCGTGACAAGTAATTG 57.803 34.615 0.45 0.45 0.00 2.32
569 570 8.038351 TCATCTATTTCCGTGACAAGTAATTGA 58.962 33.333 10.35 0.00 0.00 2.57
570 571 7.827819 TCTATTTCCGTGACAAGTAATTGAG 57.172 36.000 10.35 0.00 0.00 3.02
571 572 5.880054 ATTTCCGTGACAAGTAATTGAGG 57.120 39.130 10.35 7.40 0.00 3.86
572 573 3.328382 TCCGTGACAAGTAATTGAGGG 57.672 47.619 10.35 3.61 0.00 4.30
573 574 2.901192 TCCGTGACAAGTAATTGAGGGA 59.099 45.455 10.35 5.97 0.00 4.20
574 575 3.056107 TCCGTGACAAGTAATTGAGGGAG 60.056 47.826 10.35 0.00 0.00 4.30
575 576 3.306780 CCGTGACAAGTAATTGAGGGAGT 60.307 47.826 10.35 0.00 0.00 3.85
576 577 3.927142 CGTGACAAGTAATTGAGGGAGTC 59.073 47.826 10.35 0.00 0.00 3.36
577 578 3.927142 GTGACAAGTAATTGAGGGAGTCG 59.073 47.826 10.35 0.00 0.00 4.18
578 579 3.056107 TGACAAGTAATTGAGGGAGTCGG 60.056 47.826 10.35 0.00 0.00 4.79
588 589 2.032681 GGAGTCGGTGGCTTTGCT 59.967 61.111 0.00 0.00 0.00 3.91
607 608 1.677576 CTGCAAAACTGAAGACTGGCA 59.322 47.619 0.00 0.00 0.00 4.92
609 610 1.405105 GCAAAACTGAAGACTGGCACA 59.595 47.619 0.00 0.00 0.00 4.57
620 621 0.973632 ACTGGCACAAGATCCGTGTA 59.026 50.000 12.93 4.15 38.70 2.90
677 686 3.868661 TGTGCGAATGTGCGATTACTTAT 59.131 39.130 0.00 0.00 37.81 1.73
678 687 4.026062 TGTGCGAATGTGCGATTACTTATC 60.026 41.667 0.00 0.00 37.81 1.75
679 688 4.026062 GTGCGAATGTGCGATTACTTATCA 60.026 41.667 0.00 0.00 37.81 2.15
682 691 5.785599 GCGAATGTGCGATTACTTATCAATC 59.214 40.000 0.00 0.00 32.45 2.67
683 692 6.299604 CGAATGTGCGATTACTTATCAATCC 58.700 40.000 0.00 0.00 32.45 3.01
693 702 2.783510 ACTTATCAATCCCGACCCCATT 59.216 45.455 0.00 0.00 0.00 3.16
704 713 0.744771 GACCCCATTTGCCTCGTCTC 60.745 60.000 0.00 0.00 0.00 3.36
705 714 1.452108 CCCCATTTGCCTCGTCTCC 60.452 63.158 0.00 0.00 0.00 3.71
706 715 1.604378 CCCATTTGCCTCGTCTCCT 59.396 57.895 0.00 0.00 0.00 3.69
711 720 2.930826 TTTGCCTCGTCTCCTTTCTT 57.069 45.000 0.00 0.00 0.00 2.52
712 721 2.457366 TTGCCTCGTCTCCTTTCTTC 57.543 50.000 0.00 0.00 0.00 2.87
757 766 6.099125 TGGTTACGGATGGATATGAGAAGAAA 59.901 38.462 0.00 0.00 0.00 2.52
866 878 1.822186 AACCACACTTGTCCCACGC 60.822 57.895 0.00 0.00 0.00 5.34
867 879 2.978010 CCACACTTGTCCCACGCC 60.978 66.667 0.00 0.00 0.00 5.68
868 880 2.111043 CACACTTGTCCCACGCCT 59.889 61.111 0.00 0.00 0.00 5.52
869 881 1.961277 CACACTTGTCCCACGCCTC 60.961 63.158 0.00 0.00 0.00 4.70
870 882 2.140792 ACACTTGTCCCACGCCTCT 61.141 57.895 0.00 0.00 0.00 3.69
871 883 1.374758 CACTTGTCCCACGCCTCTC 60.375 63.158 0.00 0.00 0.00 3.20
872 884 2.266055 CTTGTCCCACGCCTCTCC 59.734 66.667 0.00 0.00 0.00 3.71
873 885 2.203788 TTGTCCCACGCCTCTCCT 60.204 61.111 0.00 0.00 0.00 3.69
874 886 2.232298 CTTGTCCCACGCCTCTCCTC 62.232 65.000 0.00 0.00 0.00 3.71
875 887 3.462678 GTCCCACGCCTCTCCTCC 61.463 72.222 0.00 0.00 0.00 4.30
876 888 3.673597 TCCCACGCCTCTCCTCCT 61.674 66.667 0.00 0.00 0.00 3.69
911 928 1.617322 TGTACGAGTCTCACCTTGCT 58.383 50.000 0.00 0.00 0.00 3.91
915 932 1.005630 GAGTCTCACCTTGCTGCGT 60.006 57.895 0.00 0.00 0.00 5.24
923 941 2.401766 CCTTGCTGCGTCCATCCAC 61.402 63.158 0.00 0.00 0.00 4.02
984 1011 0.250901 TCCCTTCTCAGCCAAGCAAC 60.251 55.000 0.00 0.00 0.00 4.17
986 1013 0.538057 CCTTCTCAGCCAAGCAACCA 60.538 55.000 0.00 0.00 0.00 3.67
987 1014 1.321474 CTTCTCAGCCAAGCAACCAA 58.679 50.000 0.00 0.00 0.00 3.67
988 1015 1.268899 CTTCTCAGCCAAGCAACCAAG 59.731 52.381 0.00 0.00 0.00 3.61
990 1017 2.049802 CAGCCAAGCAACCAAGCG 60.050 61.111 0.00 0.00 40.15 4.68
991 1018 2.203337 AGCCAAGCAACCAAGCGA 60.203 55.556 0.00 0.00 40.15 4.93
992 1019 1.604593 AGCCAAGCAACCAAGCGAT 60.605 52.632 0.00 0.00 40.15 4.58
1425 1459 4.180946 CACGCCGAGGACGAGGAG 62.181 72.222 11.61 0.00 42.66 3.69
1428 1462 3.213402 GCCGAGGACGAGGAGGAG 61.213 72.222 0.00 0.00 42.66 3.69
1633 1688 1.820481 GACGAGGAGGAGGAGGACG 60.820 68.421 0.00 0.00 0.00 4.79
1723 1789 3.790152 TCGTGGTCTGATCTCATTCAG 57.210 47.619 0.00 0.00 43.70 3.02
1830 1903 4.397417 GCATCTGCTCTGTTCCTGTTAATT 59.603 41.667 0.00 0.00 38.21 1.40
1831 1904 5.675575 GCATCTGCTCTGTTCCTGTTAATTG 60.676 44.000 0.00 0.00 38.21 2.32
1832 1905 5.227569 TCTGCTCTGTTCCTGTTAATTGA 57.772 39.130 0.00 0.00 0.00 2.57
1866 1943 4.560128 CTGTGTGTATACTGCTCTGTTGT 58.440 43.478 4.17 0.00 0.00 3.32
1867 1944 4.556233 TGTGTGTATACTGCTCTGTTGTC 58.444 43.478 4.17 0.00 0.00 3.18
1868 1945 4.038642 TGTGTGTATACTGCTCTGTTGTCA 59.961 41.667 4.17 0.00 0.00 3.58
2029 2106 6.836007 AGACCCTGTTTCTTTCTTTCTGATTT 59.164 34.615 0.00 0.00 0.00 2.17
2098 2209 8.627403 GGATTCATCTGAATGCTTATTTCTTCA 58.373 33.333 14.84 0.00 45.59 3.02
2107 2218 6.690194 ATGCTTATTTCTTCAGACCATGAC 57.310 37.500 0.00 0.00 37.77 3.06
2121 2232 6.017192 TCAGACCATGACAAAATTAGTGTGTG 60.017 38.462 0.00 0.19 31.12 3.82
2122 2233 5.241506 AGACCATGACAAAATTAGTGTGTGG 59.758 40.000 15.13 15.13 37.38 4.17
2135 2246 3.470709 AGTGTGTGGATGTGTCTTTCTG 58.529 45.455 0.00 0.00 0.00 3.02
2136 2247 2.549754 GTGTGTGGATGTGTCTTTCTGG 59.450 50.000 0.00 0.00 0.00 3.86
2138 2249 2.808543 GTGTGGATGTGTCTTTCTGGAC 59.191 50.000 0.00 0.00 36.81 4.02
2153 2264 4.481930 TCTGGACGTGCACTTTTAATTG 57.518 40.909 16.19 0.00 0.00 2.32
2164 2275 7.382218 CGTGCACTTTTAATTGATTTCCTTCTT 59.618 33.333 16.19 0.00 0.00 2.52
2165 2276 8.490355 GTGCACTTTTAATTGATTTCCTTCTTG 58.510 33.333 10.32 0.00 0.00 3.02
2178 2289 8.908903 TGATTTCCTTCTTGATAGAGAGACTAC 58.091 37.037 0.00 0.00 33.62 2.73
2180 2291 8.830915 TTTCCTTCTTGATAGAGAGACTACAT 57.169 34.615 0.00 0.00 33.62 2.29
2249 2367 3.507233 TGAATTCAGTTCTTGATGTGGCC 59.493 43.478 3.38 0.00 37.72 5.36
2255 2373 2.821969 AGTTCTTGATGTGGCCATGTTC 59.178 45.455 9.72 7.18 0.00 3.18
2259 2377 3.008923 TCTTGATGTGGCCATGTTCTGTA 59.991 43.478 9.72 0.00 0.00 2.74
2269 2390 3.311871 GCCATGTTCTGTAGAGAATGCTG 59.688 47.826 5.51 4.27 40.40 4.41
2341 2462 3.733443 AACAAGAGGCAAATTGTGTCC 57.267 42.857 3.28 0.00 39.50 4.02
2343 2464 1.068333 CAAGAGGCAAATTGTGTCCGG 60.068 52.381 0.00 0.00 29.16 5.14
2377 2773 0.893270 CGACCCATTTGCCTTCACCA 60.893 55.000 0.00 0.00 0.00 4.17
2378 2774 1.560505 GACCCATTTGCCTTCACCAT 58.439 50.000 0.00 0.00 0.00 3.55
2393 2789 4.545208 TCACCATCCGATGTTAGTTTCA 57.455 40.909 7.60 0.00 0.00 2.69
2433 2829 1.225855 AGCAACAGTTTCGATGCGAA 58.774 45.000 0.00 0.00 44.28 4.70
2438 2834 3.455619 ACAGTTTCGATGCGAATGTTC 57.544 42.857 2.92 0.00 45.28 3.18
2440 2836 1.393539 AGTTTCGATGCGAATGTTCCG 59.606 47.619 2.92 0.00 45.28 4.30
2445 2841 1.762222 GATGCGAATGTTCCGTCGGG 61.762 60.000 12.29 0.00 37.73 5.14
2447 2843 2.030958 GCGAATGTTCCGTCGGGTT 61.031 57.895 12.29 1.67 37.73 4.11
2449 2845 0.869730 CGAATGTTCCGTCGGGTTTT 59.130 50.000 12.29 0.37 33.62 2.43
2509 2906 3.201266 TGTTTTACCTTGACACCTCTGGT 59.799 43.478 0.00 0.00 35.62 4.00
2600 2997 1.880027 GTTTCTTCACGGCACCAGAAT 59.120 47.619 0.00 0.00 0.00 2.40
2619 3016 1.009675 GTTGTGCTGTGGACGCTTG 60.010 57.895 0.00 0.00 0.00 4.01
2656 3055 2.435059 GAGTGAGGCGGTGCTTCC 60.435 66.667 0.00 0.00 33.61 3.46
2672 3071 4.154375 GTGCTTCCTAACAGCCTAGTTTTC 59.846 45.833 0.00 0.00 36.33 2.29
2693 3093 3.136763 CGTATCCTCATGAGCTGCAATT 58.863 45.455 17.76 0.00 0.00 2.32
2695 3095 4.319333 CGTATCCTCATGAGCTGCAATTTC 60.319 45.833 17.76 0.00 0.00 2.17
2701 3101 5.473846 CCTCATGAGCTGCAATTTCTATGAT 59.526 40.000 17.76 0.00 0.00 2.45
2702 3102 6.348622 CCTCATGAGCTGCAATTTCTATGATC 60.349 42.308 17.76 0.00 0.00 2.92
2703 3103 6.296803 TCATGAGCTGCAATTTCTATGATCT 58.703 36.000 1.02 0.00 0.00 2.75
2704 3104 6.427242 TCATGAGCTGCAATTTCTATGATCTC 59.573 38.462 1.02 0.00 0.00 2.75
2705 3105 5.926663 TGAGCTGCAATTTCTATGATCTCT 58.073 37.500 1.02 0.00 0.00 3.10
2706 3106 6.354938 TGAGCTGCAATTTCTATGATCTCTT 58.645 36.000 1.02 0.00 0.00 2.85
2707 3107 6.482641 TGAGCTGCAATTTCTATGATCTCTTC 59.517 38.462 1.02 0.00 0.00 2.87
2708 3108 5.764192 AGCTGCAATTTCTATGATCTCTTCC 59.236 40.000 1.02 0.00 0.00 3.46
2709 3109 5.764192 GCTGCAATTTCTATGATCTCTTCCT 59.236 40.000 0.00 0.00 0.00 3.36
2710 3110 6.262720 GCTGCAATTTCTATGATCTCTTCCTT 59.737 38.462 0.00 0.00 0.00 3.36
2711 3111 7.201803 GCTGCAATTTCTATGATCTCTTCCTTT 60.202 37.037 0.00 0.00 0.00 3.11
2712 3112 9.334947 CTGCAATTTCTATGATCTCTTCCTTTA 57.665 33.333 0.00 0.00 0.00 1.85
2713 3113 9.334947 TGCAATTTCTATGATCTCTTCCTTTAG 57.665 33.333 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.081917 TGAGCATATCCTGTCACGTAACAA 60.082 41.667 0.00 0.00 0.00 2.83
40 41 1.945387 TTTTGCGGCAAAATGCTTGA 58.055 40.000 30.89 12.40 44.28 3.02
41 42 2.752144 TTTTTGCGGCAAAATGCTTG 57.248 40.000 33.65 0.00 44.28 4.01
75 76 0.251354 TCCCAGTCTGATGCTTGAGC 59.749 55.000 0.00 0.00 42.50 4.26
76 77 2.775911 TTCCCAGTCTGATGCTTGAG 57.224 50.000 0.00 0.00 0.00 3.02
89 90 5.128205 TGCATCAGTTCAGATAATTCCCAG 58.872 41.667 0.00 0.00 0.00 4.45
91 92 5.533903 ACATGCATCAGTTCAGATAATTCCC 59.466 40.000 0.00 0.00 0.00 3.97
123 124 7.761249 GGGAACAGAAATGAGTTGGAAATATTG 59.239 37.037 0.00 0.00 0.00 1.90
136 137 7.733773 TCATACTCTTAGGGAACAGAAATGA 57.266 36.000 0.00 0.00 0.00 2.57
154 155 3.990092 TCTTCACTGCGTGTTTCATACT 58.010 40.909 8.22 0.00 34.79 2.12
155 156 4.725556 TTCTTCACTGCGTGTTTCATAC 57.274 40.909 8.22 0.00 34.79 2.39
158 159 2.286950 GCATTCTTCACTGCGTGTTTCA 60.287 45.455 8.22 0.00 34.79 2.69
181 182 8.593492 AAAAAGGAAAACTCAAATCTATGCAC 57.407 30.769 0.00 0.00 0.00 4.57
215 216 9.331282 ACATATTTCATGCTTAAGAAGTACTCC 57.669 33.333 6.67 0.00 0.00 3.85
223 224 9.547753 GGAGTAGAACATATTTCATGCTTAAGA 57.452 33.333 6.67 0.00 0.00 2.10
224 225 8.778358 GGGAGTAGAACATATTTCATGCTTAAG 58.222 37.037 0.00 0.00 0.00 1.85
225 226 8.494433 AGGGAGTAGAACATATTTCATGCTTAA 58.506 33.333 0.00 0.00 0.00 1.85
226 227 8.034313 AGGGAGTAGAACATATTTCATGCTTA 57.966 34.615 0.00 0.00 0.00 3.09
227 228 6.904626 AGGGAGTAGAACATATTTCATGCTT 58.095 36.000 0.00 0.00 0.00 3.91
228 229 6.100279 TGAGGGAGTAGAACATATTTCATGCT 59.900 38.462 0.00 0.00 0.00 3.79
229 230 6.291377 TGAGGGAGTAGAACATATTTCATGC 58.709 40.000 0.00 0.00 0.00 4.06
230 231 7.504403 ACTGAGGGAGTAGAACATATTTCATG 58.496 38.462 0.00 0.00 30.86 3.07
231 232 7.682787 ACTGAGGGAGTAGAACATATTTCAT 57.317 36.000 0.00 0.00 30.86 2.57
232 233 7.496346 AACTGAGGGAGTAGAACATATTTCA 57.504 36.000 0.00 0.00 33.09 2.69
233 234 7.281100 CCAAACTGAGGGAGTAGAACATATTTC 59.719 40.741 0.00 0.00 33.09 2.17
234 235 7.037586 TCCAAACTGAGGGAGTAGAACATATTT 60.038 37.037 0.00 0.00 33.09 1.40
235 236 6.443849 TCCAAACTGAGGGAGTAGAACATATT 59.556 38.462 0.00 0.00 33.09 1.28
236 237 5.964477 TCCAAACTGAGGGAGTAGAACATAT 59.036 40.000 0.00 0.00 33.09 1.78
237 238 5.338632 TCCAAACTGAGGGAGTAGAACATA 58.661 41.667 0.00 0.00 33.09 2.29
238 239 4.168101 TCCAAACTGAGGGAGTAGAACAT 58.832 43.478 0.00 0.00 33.09 2.71
239 240 3.583228 TCCAAACTGAGGGAGTAGAACA 58.417 45.455 0.00 0.00 33.09 3.18
240 241 4.618920 TTCCAAACTGAGGGAGTAGAAC 57.381 45.455 0.00 0.00 33.09 3.01
241 242 5.843019 AATTCCAAACTGAGGGAGTAGAA 57.157 39.130 0.00 0.00 33.09 2.10
242 243 5.843019 AAATTCCAAACTGAGGGAGTAGA 57.157 39.130 0.00 0.00 33.09 2.59
243 244 6.241645 AGAAAATTCCAAACTGAGGGAGTAG 58.758 40.000 0.00 0.00 33.09 2.57
244 245 6.200878 AGAAAATTCCAAACTGAGGGAGTA 57.799 37.500 0.00 0.00 33.09 2.59
245 246 5.066913 AGAAAATTCCAAACTGAGGGAGT 57.933 39.130 0.00 0.00 35.94 3.85
246 247 5.302823 ACAAGAAAATTCCAAACTGAGGGAG 59.697 40.000 0.00 0.00 34.02 4.30
247 248 5.208121 ACAAGAAAATTCCAAACTGAGGGA 58.792 37.500 0.00 0.00 0.00 4.20
248 249 5.535753 ACAAGAAAATTCCAAACTGAGGG 57.464 39.130 0.00 0.00 0.00 4.30
249 250 7.014230 TCCTAACAAGAAAATTCCAAACTGAGG 59.986 37.037 0.00 0.00 0.00 3.86
250 251 7.940850 TCCTAACAAGAAAATTCCAAACTGAG 58.059 34.615 0.00 0.00 0.00 3.35
251 252 7.889873 TCCTAACAAGAAAATTCCAAACTGA 57.110 32.000 0.00 0.00 0.00 3.41
282 283 9.865321 CGCCTAATTAGCCAAATACTAATACTA 57.135 33.333 6.99 0.00 38.96 1.82
283 284 8.591072 TCGCCTAATTAGCCAAATACTAATACT 58.409 33.333 6.99 0.00 38.96 2.12
284 285 8.767478 TCGCCTAATTAGCCAAATACTAATAC 57.233 34.615 6.99 0.00 38.96 1.89
285 286 9.953565 AATCGCCTAATTAGCCAAATACTAATA 57.046 29.630 6.99 0.00 38.96 0.98
286 287 8.863872 AATCGCCTAATTAGCCAAATACTAAT 57.136 30.769 6.99 0.00 41.08 1.73
287 288 9.431887 CTAATCGCCTAATTAGCCAAATACTAA 57.568 33.333 6.99 0.00 33.68 2.24
288 289 8.997621 CTAATCGCCTAATTAGCCAAATACTA 57.002 34.615 6.99 0.00 33.68 1.82
289 290 7.907214 CTAATCGCCTAATTAGCCAAATACT 57.093 36.000 6.99 0.00 33.68 2.12
298 299 7.897575 AAGAATCTGCTAATCGCCTAATTAG 57.102 36.000 5.43 5.43 40.63 1.73
299 300 9.424319 CTAAAGAATCTGCTAATCGCCTAATTA 57.576 33.333 0.00 0.00 38.05 1.40
300 301 8.150945 TCTAAAGAATCTGCTAATCGCCTAATT 58.849 33.333 0.00 0.00 38.05 1.40
301 302 7.671302 TCTAAAGAATCTGCTAATCGCCTAAT 58.329 34.615 0.00 0.00 38.05 1.73
302 303 7.050970 TCTAAAGAATCTGCTAATCGCCTAA 57.949 36.000 0.00 0.00 38.05 2.69
303 304 6.650427 TCTAAAGAATCTGCTAATCGCCTA 57.350 37.500 0.00 0.00 38.05 3.93
304 305 5.537300 TCTAAAGAATCTGCTAATCGCCT 57.463 39.130 0.00 0.00 38.05 5.52
305 306 6.793492 ATTCTAAAGAATCTGCTAATCGCC 57.207 37.500 0.00 0.00 40.49 5.54
306 307 9.965748 GAATATTCTAAAGAATCTGCTAATCGC 57.034 33.333 8.45 0.00 43.17 4.58
333 334 3.385755 GCCAGGATTCTAACTACCGGTTA 59.614 47.826 15.04 0.00 39.17 2.85
334 335 2.169978 GCCAGGATTCTAACTACCGGTT 59.830 50.000 15.04 0.00 41.54 4.44
335 336 1.761198 GCCAGGATTCTAACTACCGGT 59.239 52.381 13.98 13.98 0.00 5.28
336 337 1.269621 CGCCAGGATTCTAACTACCGG 60.270 57.143 0.00 0.00 0.00 5.28
337 338 1.407979 ACGCCAGGATTCTAACTACCG 59.592 52.381 0.00 0.00 0.00 4.02
338 339 3.195661 CAACGCCAGGATTCTAACTACC 58.804 50.000 0.00 0.00 0.00 3.18
339 340 3.858247 ACAACGCCAGGATTCTAACTAC 58.142 45.455 0.00 0.00 0.00 2.73
340 341 3.118884 GGACAACGCCAGGATTCTAACTA 60.119 47.826 0.00 0.00 0.00 2.24
341 342 2.354805 GGACAACGCCAGGATTCTAACT 60.355 50.000 0.00 0.00 0.00 2.24
342 343 2.007608 GGACAACGCCAGGATTCTAAC 58.992 52.381 0.00 0.00 0.00 2.34
343 344 1.626321 TGGACAACGCCAGGATTCTAA 59.374 47.619 0.00 0.00 33.10 2.10
344 345 1.271856 TGGACAACGCCAGGATTCTA 58.728 50.000 0.00 0.00 33.10 2.10
345 346 2.066340 TGGACAACGCCAGGATTCT 58.934 52.632 0.00 0.00 33.10 2.40
346 347 4.713946 TGGACAACGCCAGGATTC 57.286 55.556 0.00 0.00 33.10 2.52
355 356 0.240145 TCTACTGCGTCTGGACAACG 59.760 55.000 1.63 0.00 42.87 4.10
356 357 2.656560 ATCTACTGCGTCTGGACAAC 57.343 50.000 1.63 0.00 0.00 3.32
357 358 2.099263 GCTATCTACTGCGTCTGGACAA 59.901 50.000 1.63 0.00 0.00 3.18
358 359 1.676529 GCTATCTACTGCGTCTGGACA 59.323 52.381 1.63 0.00 0.00 4.02
359 360 1.334239 CGCTATCTACTGCGTCTGGAC 60.334 57.143 0.00 0.00 46.09 4.02
360 361 0.945099 CGCTATCTACTGCGTCTGGA 59.055 55.000 0.00 0.00 46.09 3.86
361 362 3.463574 CGCTATCTACTGCGTCTGG 57.536 57.895 0.00 0.00 46.09 3.86
367 368 2.320367 CGATGGTTCGCTATCTACTGC 58.680 52.381 0.00 0.00 38.75 4.40
395 396 3.057174 AGACACAACGCTGGTTTGAAAAA 60.057 39.130 0.00 0.00 32.98 1.94
396 397 2.490115 AGACACAACGCTGGTTTGAAAA 59.510 40.909 0.00 0.00 32.98 2.29
397 398 2.088423 AGACACAACGCTGGTTTGAAA 58.912 42.857 0.00 0.00 32.98 2.69
398 399 1.745232 AGACACAACGCTGGTTTGAA 58.255 45.000 0.00 0.00 32.98 2.69
399 400 1.745232 AAGACACAACGCTGGTTTGA 58.255 45.000 0.00 0.00 32.98 2.69
400 401 2.450160 GAAAGACACAACGCTGGTTTG 58.550 47.619 0.00 0.00 32.98 2.93
401 402 1.404035 GGAAAGACACAACGCTGGTTT 59.596 47.619 0.00 0.00 32.98 3.27
402 403 1.021968 GGAAAGACACAACGCTGGTT 58.978 50.000 0.00 0.00 36.63 3.67
403 404 1.157870 CGGAAAGACACAACGCTGGT 61.158 55.000 0.00 0.00 0.00 4.00
404 405 0.878523 TCGGAAAGACACAACGCTGG 60.879 55.000 0.00 0.00 0.00 4.85
405 406 0.934496 TTCGGAAAGACACAACGCTG 59.066 50.000 0.00 0.00 0.00 5.18
406 407 1.329599 GTTTCGGAAAGACACAACGCT 59.670 47.619 2.85 0.00 30.23 5.07
407 408 1.738432 GTTTCGGAAAGACACAACGC 58.262 50.000 2.85 0.00 30.23 4.84
408 409 1.589320 TCGTTTCGGAAAGACACAACG 59.411 47.619 2.85 3.08 40.19 4.10
409 410 2.595881 CGTCGTTTCGGAAAGACACAAC 60.596 50.000 20.33 0.00 42.19 3.32
410 411 1.589320 CGTCGTTTCGGAAAGACACAA 59.411 47.619 20.33 0.00 42.19 3.33
411 412 1.202203 CGTCGTTTCGGAAAGACACA 58.798 50.000 20.33 0.00 42.19 3.72
412 413 0.111398 GCGTCGTTTCGGAAAGACAC 60.111 55.000 20.33 8.83 42.19 3.67
413 414 1.542272 CGCGTCGTTTCGGAAAGACA 61.542 55.000 20.33 3.93 42.19 3.41
414 415 1.127225 CGCGTCGTTTCGGAAAGAC 59.873 57.895 12.02 12.02 39.78 3.01
415 416 0.594540 TTCGCGTCGTTTCGGAAAGA 60.595 50.000 5.77 1.41 0.00 2.52
416 417 0.448379 GTTCGCGTCGTTTCGGAAAG 60.448 55.000 5.77 0.00 0.00 2.62
417 418 1.559336 GTTCGCGTCGTTTCGGAAA 59.441 52.632 5.77 0.00 0.00 3.13
418 419 2.302230 GGTTCGCGTCGTTTCGGAA 61.302 57.895 5.77 0.00 0.00 4.30
419 420 2.682256 AAGGTTCGCGTCGTTTCGGA 62.682 55.000 5.77 0.00 0.00 4.55
420 421 2.305127 AAGGTTCGCGTCGTTTCGG 61.305 57.895 5.77 0.00 0.00 4.30
421 422 1.154908 CAAGGTTCGCGTCGTTTCG 60.155 57.895 5.77 0.00 0.00 3.46
422 423 1.130955 TACAAGGTTCGCGTCGTTTC 58.869 50.000 5.77 0.00 0.00 2.78
423 424 1.569708 TTACAAGGTTCGCGTCGTTT 58.430 45.000 5.77 0.00 0.00 3.60
424 425 1.723003 GATTACAAGGTTCGCGTCGTT 59.277 47.619 5.77 6.10 0.00 3.85
425 426 1.343506 GATTACAAGGTTCGCGTCGT 58.656 50.000 5.77 0.00 0.00 4.34
426 427 0.293723 CGATTACAAGGTTCGCGTCG 59.706 55.000 5.77 0.00 0.00 5.12
427 428 0.643820 CCGATTACAAGGTTCGCGTC 59.356 55.000 5.77 0.09 0.00 5.19
428 429 1.356527 GCCGATTACAAGGTTCGCGT 61.357 55.000 5.77 0.00 0.00 6.01
429 430 1.347221 GCCGATTACAAGGTTCGCG 59.653 57.895 0.00 0.00 0.00 5.87
430 431 1.014352 ATGCCGATTACAAGGTTCGC 58.986 50.000 0.00 0.00 0.00 4.70
431 432 2.006888 ACATGCCGATTACAAGGTTCG 58.993 47.619 0.00 0.00 0.00 3.95
432 433 5.106475 TGTTTACATGCCGATTACAAGGTTC 60.106 40.000 0.00 0.00 0.00 3.62
433 434 4.762765 TGTTTACATGCCGATTACAAGGTT 59.237 37.500 0.00 0.00 0.00 3.50
434 435 4.155280 GTGTTTACATGCCGATTACAAGGT 59.845 41.667 0.00 0.00 0.00 3.50
435 436 4.658071 GTGTTTACATGCCGATTACAAGG 58.342 43.478 0.00 0.00 0.00 3.61
436 437 4.092237 TCGTGTTTACATGCCGATTACAAG 59.908 41.667 0.00 0.00 33.05 3.16
437 438 3.995048 TCGTGTTTACATGCCGATTACAA 59.005 39.130 0.00 0.00 33.05 2.41
438 439 3.368539 GTCGTGTTTACATGCCGATTACA 59.631 43.478 0.00 0.00 33.05 2.41
439 440 3.540744 CGTCGTGTTTACATGCCGATTAC 60.541 47.826 0.00 0.00 36.47 1.89
440 441 2.599527 CGTCGTGTTTACATGCCGATTA 59.400 45.455 0.00 0.00 36.47 1.75
441 442 1.392168 CGTCGTGTTTACATGCCGATT 59.608 47.619 0.00 0.00 36.47 3.34
442 443 0.996462 CGTCGTGTTTACATGCCGAT 59.004 50.000 0.00 0.00 36.47 4.18
443 444 1.009903 CCGTCGTGTTTACATGCCGA 61.010 55.000 7.05 0.00 36.47 5.54
444 445 1.418367 CCGTCGTGTTTACATGCCG 59.582 57.895 0.00 0.00 34.45 5.69
445 446 1.133869 GCCGTCGTGTTTACATGCC 59.866 57.895 0.00 0.00 33.05 4.40
446 447 0.094730 GAGCCGTCGTGTTTACATGC 59.905 55.000 0.00 0.00 33.05 4.06
447 448 0.365523 CGAGCCGTCGTGTTTACATG 59.634 55.000 0.00 0.00 41.57 3.21
448 449 0.734942 CCGAGCCGTCGTGTTTACAT 60.735 55.000 0.00 0.00 45.30 2.29
449 450 1.372004 CCGAGCCGTCGTGTTTACA 60.372 57.895 0.00 0.00 45.30 2.41
450 451 2.090524 CCCGAGCCGTCGTGTTTAC 61.091 63.158 0.00 0.00 45.30 2.01
451 452 2.259204 CCCGAGCCGTCGTGTTTA 59.741 61.111 0.00 0.00 45.30 2.01
452 453 3.608662 TCCCGAGCCGTCGTGTTT 61.609 61.111 0.00 0.00 45.30 2.83
453 454 4.353437 GTCCCGAGCCGTCGTGTT 62.353 66.667 0.00 0.00 45.30 3.32
455 456 2.071844 ATATGTCCCGAGCCGTCGTG 62.072 60.000 0.00 0.00 45.30 4.35
456 457 0.535780 TATATGTCCCGAGCCGTCGT 60.536 55.000 0.00 0.00 45.30 4.34
457 458 0.594602 TTATATGTCCCGAGCCGTCG 59.405 55.000 0.00 0.00 46.39 5.12
458 459 1.612463 ACTTATATGTCCCGAGCCGTC 59.388 52.381 0.00 0.00 0.00 4.79
459 460 1.700955 ACTTATATGTCCCGAGCCGT 58.299 50.000 0.00 0.00 0.00 5.68
460 461 2.094854 GGTACTTATATGTCCCGAGCCG 60.095 54.545 0.00 0.00 0.00 5.52
461 462 3.056749 CAGGTACTTATATGTCCCGAGCC 60.057 52.174 0.00 0.00 34.60 4.70
462 463 3.614390 GCAGGTACTTATATGTCCCGAGC 60.614 52.174 0.00 0.80 34.60 5.03
463 464 3.572682 TGCAGGTACTTATATGTCCCGAG 59.427 47.826 0.00 0.00 34.60 4.63
464 465 3.568443 TGCAGGTACTTATATGTCCCGA 58.432 45.455 0.00 0.00 34.60 5.14
465 466 3.321111 ACTGCAGGTACTTATATGTCCCG 59.679 47.826 19.93 0.00 34.60 5.14
466 467 4.344102 TGACTGCAGGTACTTATATGTCCC 59.656 45.833 19.93 0.00 34.60 4.46
467 468 5.069251 AGTGACTGCAGGTACTTATATGTCC 59.931 44.000 19.93 0.00 34.60 4.02
468 469 6.150396 AGTGACTGCAGGTACTTATATGTC 57.850 41.667 19.93 2.95 34.60 3.06
469 470 7.505923 TGATAGTGACTGCAGGTACTTATATGT 59.494 37.037 24.18 6.88 34.60 2.29
470 471 7.886338 TGATAGTGACTGCAGGTACTTATATG 58.114 38.462 24.18 0.00 34.60 1.78
471 472 8.478775 TTGATAGTGACTGCAGGTACTTATAT 57.521 34.615 24.18 14.94 34.60 0.86
472 473 7.891498 TTGATAGTGACTGCAGGTACTTATA 57.109 36.000 24.18 11.58 34.60 0.98
473 474 6.791867 TTGATAGTGACTGCAGGTACTTAT 57.208 37.500 24.18 16.71 34.60 1.73
474 475 6.379988 TCATTGATAGTGACTGCAGGTACTTA 59.620 38.462 24.18 13.79 34.60 2.24
475 476 5.187772 TCATTGATAGTGACTGCAGGTACTT 59.812 40.000 24.18 14.83 34.60 2.24
476 477 4.711846 TCATTGATAGTGACTGCAGGTACT 59.288 41.667 23.05 23.05 43.88 2.73
477 478 5.011090 TCATTGATAGTGACTGCAGGTAC 57.989 43.478 19.93 15.93 0.00 3.34
478 479 5.675684 TTCATTGATAGTGACTGCAGGTA 57.324 39.130 19.93 3.01 0.00 3.08
479 480 4.558226 TTCATTGATAGTGACTGCAGGT 57.442 40.909 19.93 3.31 0.00 4.00
480 481 5.587443 TGATTTCATTGATAGTGACTGCAGG 59.413 40.000 19.93 0.00 0.00 4.85
481 482 6.673154 TGATTTCATTGATAGTGACTGCAG 57.327 37.500 13.48 13.48 0.00 4.41
482 483 7.201758 GGATTGATTTCATTGATAGTGACTGCA 60.202 37.037 0.00 0.00 0.00 4.41
483 484 7.013083 AGGATTGATTTCATTGATAGTGACTGC 59.987 37.037 0.00 0.00 0.00 4.40
484 485 8.447924 AGGATTGATTTCATTGATAGTGACTG 57.552 34.615 0.00 0.00 0.00 3.51
485 486 9.471702 AAAGGATTGATTTCATTGATAGTGACT 57.528 29.630 0.00 0.00 0.00 3.41
486 487 9.727627 GAAAGGATTGATTTCATTGATAGTGAC 57.272 33.333 0.00 0.00 36.79 3.67
487 488 9.465199 TGAAAGGATTGATTTCATTGATAGTGA 57.535 29.630 0.00 0.00 40.72 3.41
488 489 9.512435 GTGAAAGGATTGATTTCATTGATAGTG 57.488 33.333 4.60 0.00 45.54 2.74
489 490 9.471702 AGTGAAAGGATTGATTTCATTGATAGT 57.528 29.630 4.60 0.00 45.54 2.12
492 493 8.809066 TGAAGTGAAAGGATTGATTTCATTGAT 58.191 29.630 4.60 0.00 45.54 2.57
493 494 8.180706 TGAAGTGAAAGGATTGATTTCATTGA 57.819 30.769 4.60 0.00 45.54 2.57
494 495 8.821147 TTGAAGTGAAAGGATTGATTTCATTG 57.179 30.769 4.60 0.00 45.54 2.82
495 496 9.649167 GATTGAAGTGAAAGGATTGATTTCATT 57.351 29.630 4.60 0.00 45.54 2.57
496 497 9.032624 AGATTGAAGTGAAAGGATTGATTTCAT 57.967 29.630 4.60 0.00 45.54 2.57
497 498 8.413309 AGATTGAAGTGAAAGGATTGATTTCA 57.587 30.769 0.00 0.00 42.73 2.69
498 499 9.702494 AAAGATTGAAGTGAAAGGATTGATTTC 57.298 29.630 0.00 0.00 37.21 2.17
499 500 9.702494 GAAAGATTGAAGTGAAAGGATTGATTT 57.298 29.630 0.00 0.00 0.00 2.17
500 501 9.086758 AGAAAGATTGAAGTGAAAGGATTGATT 57.913 29.630 0.00 0.00 0.00 2.57
501 502 8.647256 AGAAAGATTGAAGTGAAAGGATTGAT 57.353 30.769 0.00 0.00 0.00 2.57
502 503 8.355169 CAAGAAAGATTGAAGTGAAAGGATTGA 58.645 33.333 0.00 0.00 31.55 2.57
503 504 8.139989 ACAAGAAAGATTGAAGTGAAAGGATTG 58.860 33.333 0.00 0.00 34.20 2.67
504 505 8.242729 ACAAGAAAGATTGAAGTGAAAGGATT 57.757 30.769 0.00 0.00 34.20 3.01
505 506 7.830099 ACAAGAAAGATTGAAGTGAAAGGAT 57.170 32.000 0.00 0.00 34.20 3.24
506 507 7.645058 AACAAGAAAGATTGAAGTGAAAGGA 57.355 32.000 0.00 0.00 34.20 3.36
507 508 8.193438 AGAAACAAGAAAGATTGAAGTGAAAGG 58.807 33.333 0.00 0.00 34.20 3.11
508 509 9.230932 GAGAAACAAGAAAGATTGAAGTGAAAG 57.769 33.333 0.00 0.00 34.20 2.62
509 510 8.960591 AGAGAAACAAGAAAGATTGAAGTGAAA 58.039 29.630 0.00 0.00 34.20 2.69
510 511 8.511604 AGAGAAACAAGAAAGATTGAAGTGAA 57.488 30.769 0.00 0.00 34.20 3.18
511 512 8.511604 AAGAGAAACAAGAAAGATTGAAGTGA 57.488 30.769 0.00 0.00 34.20 3.41
512 513 8.400947 TGAAGAGAAACAAGAAAGATTGAAGTG 58.599 33.333 0.00 0.00 34.20 3.16
513 514 8.511604 TGAAGAGAAACAAGAAAGATTGAAGT 57.488 30.769 0.00 0.00 34.20 3.01
514 515 9.962783 AATGAAGAGAAACAAGAAAGATTGAAG 57.037 29.630 0.00 0.00 34.20 3.02
516 517 9.956720 GAAATGAAGAGAAACAAGAAAGATTGA 57.043 29.630 0.00 0.00 34.20 2.57
517 518 9.962783 AGAAATGAAGAGAAACAAGAAAGATTG 57.037 29.630 0.00 0.00 36.22 2.67
519 520 9.347240 TGAGAAATGAAGAGAAACAAGAAAGAT 57.653 29.630 0.00 0.00 0.00 2.40
520 521 8.737168 TGAGAAATGAAGAGAAACAAGAAAGA 57.263 30.769 0.00 0.00 0.00 2.52
521 522 9.609950 GATGAGAAATGAAGAGAAACAAGAAAG 57.390 33.333 0.00 0.00 0.00 2.62
522 523 9.347240 AGATGAGAAATGAAGAGAAACAAGAAA 57.653 29.630 0.00 0.00 0.00 2.52
523 524 8.915057 AGATGAGAAATGAAGAGAAACAAGAA 57.085 30.769 0.00 0.00 0.00 2.52
529 530 9.102757 CGGAAATAGATGAGAAATGAAGAGAAA 57.897 33.333 0.00 0.00 0.00 2.52
530 531 8.260818 ACGGAAATAGATGAGAAATGAAGAGAA 58.739 33.333 0.00 0.00 0.00 2.87
531 532 7.708322 CACGGAAATAGATGAGAAATGAAGAGA 59.292 37.037 0.00 0.00 0.00 3.10
532 533 7.708322 TCACGGAAATAGATGAGAAATGAAGAG 59.292 37.037 0.00 0.00 0.00 2.85
533 534 7.492669 GTCACGGAAATAGATGAGAAATGAAGA 59.507 37.037 0.00 0.00 0.00 2.87
534 535 7.278646 TGTCACGGAAATAGATGAGAAATGAAG 59.721 37.037 0.00 0.00 0.00 3.02
535 536 7.102993 TGTCACGGAAATAGATGAGAAATGAA 58.897 34.615 0.00 0.00 0.00 2.57
536 537 6.639563 TGTCACGGAAATAGATGAGAAATGA 58.360 36.000 0.00 0.00 0.00 2.57
537 538 6.908870 TGTCACGGAAATAGATGAGAAATG 57.091 37.500 0.00 0.00 0.00 2.32
538 539 7.106239 ACTTGTCACGGAAATAGATGAGAAAT 58.894 34.615 0.00 0.00 0.00 2.17
539 540 6.464222 ACTTGTCACGGAAATAGATGAGAAA 58.536 36.000 0.00 0.00 0.00 2.52
540 541 6.037786 ACTTGTCACGGAAATAGATGAGAA 57.962 37.500 0.00 0.00 0.00 2.87
541 542 5.661056 ACTTGTCACGGAAATAGATGAGA 57.339 39.130 0.00 0.00 0.00 3.27
542 543 8.331022 CAATTACTTGTCACGGAAATAGATGAG 58.669 37.037 0.00 0.00 0.00 2.90
543 544 8.038351 TCAATTACTTGTCACGGAAATAGATGA 58.962 33.333 0.00 0.00 33.87 2.92
544 545 8.196802 TCAATTACTTGTCACGGAAATAGATG 57.803 34.615 0.00 0.00 33.87 2.90
545 546 7.495934 CCTCAATTACTTGTCACGGAAATAGAT 59.504 37.037 0.00 0.00 33.87 1.98
546 547 6.816640 CCTCAATTACTTGTCACGGAAATAGA 59.183 38.462 0.00 0.00 33.87 1.98
547 548 6.037172 CCCTCAATTACTTGTCACGGAAATAG 59.963 42.308 0.00 0.00 33.87 1.73
548 549 5.878116 CCCTCAATTACTTGTCACGGAAATA 59.122 40.000 0.00 0.00 33.87 1.40
549 550 4.700213 CCCTCAATTACTTGTCACGGAAAT 59.300 41.667 0.00 0.00 33.87 2.17
550 551 4.069304 CCCTCAATTACTTGTCACGGAAA 58.931 43.478 0.00 0.00 33.87 3.13
551 552 3.325425 TCCCTCAATTACTTGTCACGGAA 59.675 43.478 0.00 0.00 33.87 4.30
552 553 2.901192 TCCCTCAATTACTTGTCACGGA 59.099 45.455 0.00 0.00 33.87 4.69
553 554 3.262420 CTCCCTCAATTACTTGTCACGG 58.738 50.000 0.00 0.00 33.87 4.94
554 555 3.926616 ACTCCCTCAATTACTTGTCACG 58.073 45.455 0.00 0.00 33.87 4.35
555 556 3.927142 CGACTCCCTCAATTACTTGTCAC 59.073 47.826 0.00 0.00 33.87 3.67
556 557 3.056107 CCGACTCCCTCAATTACTTGTCA 60.056 47.826 0.00 0.00 33.87 3.58
557 558 3.056035 ACCGACTCCCTCAATTACTTGTC 60.056 47.826 0.00 0.00 33.87 3.18
558 559 2.904434 ACCGACTCCCTCAATTACTTGT 59.096 45.455 0.00 0.00 33.87 3.16
559 560 3.262420 CACCGACTCCCTCAATTACTTG 58.738 50.000 0.00 0.00 0.00 3.16
560 561 2.236395 CCACCGACTCCCTCAATTACTT 59.764 50.000 0.00 0.00 0.00 2.24
561 562 1.831736 CCACCGACTCCCTCAATTACT 59.168 52.381 0.00 0.00 0.00 2.24
562 563 1.742750 GCCACCGACTCCCTCAATTAC 60.743 57.143 0.00 0.00 0.00 1.89
563 564 0.539986 GCCACCGACTCCCTCAATTA 59.460 55.000 0.00 0.00 0.00 1.40
564 565 1.201429 AGCCACCGACTCCCTCAATT 61.201 55.000 0.00 0.00 0.00 2.32
565 566 1.201429 AAGCCACCGACTCCCTCAAT 61.201 55.000 0.00 0.00 0.00 2.57
566 567 1.415672 AAAGCCACCGACTCCCTCAA 61.416 55.000 0.00 0.00 0.00 3.02
567 568 1.841556 AAAGCCACCGACTCCCTCA 60.842 57.895 0.00 0.00 0.00 3.86
568 569 1.376037 CAAAGCCACCGACTCCCTC 60.376 63.158 0.00 0.00 0.00 4.30
569 570 2.750350 CAAAGCCACCGACTCCCT 59.250 61.111 0.00 0.00 0.00 4.20
570 571 3.056328 GCAAAGCCACCGACTCCC 61.056 66.667 0.00 0.00 0.00 4.30
571 572 2.032681 AGCAAAGCCACCGACTCC 59.967 61.111 0.00 0.00 0.00 3.85
572 573 2.970974 GCAGCAAAGCCACCGACTC 61.971 63.158 0.00 0.00 0.00 3.36
573 574 2.980233 GCAGCAAAGCCACCGACT 60.980 61.111 0.00 0.00 0.00 4.18
574 575 2.348605 TTTGCAGCAAAGCCACCGAC 62.349 55.000 16.93 0.00 0.00 4.79
575 576 1.670949 TTTTGCAGCAAAGCCACCGA 61.671 50.000 19.74 1.41 34.72 4.69
576 577 1.227205 TTTTGCAGCAAAGCCACCG 60.227 52.632 19.74 0.00 34.72 4.94
577 578 0.179076 AGTTTTGCAGCAAAGCCACC 60.179 50.000 25.99 11.62 35.66 4.61
578 579 0.932399 CAGTTTTGCAGCAAAGCCAC 59.068 50.000 25.99 18.84 35.66 5.01
588 589 1.405105 GTGCCAGTCTTCAGTTTTGCA 59.595 47.619 0.00 0.00 0.00 4.08
620 621 1.740296 GGAATGTGCTACGCCGTGT 60.740 57.895 0.00 0.00 0.00 4.49
624 625 2.895372 CCCGGAATGTGCTACGCC 60.895 66.667 0.73 0.00 0.00 5.68
625 626 2.171725 GTCCCGGAATGTGCTACGC 61.172 63.158 0.73 0.00 0.00 4.42
652 653 4.058124 AGTAATCGCACATTCGCACATAT 58.942 39.130 0.00 0.00 0.00 1.78
677 686 0.682855 GCAAATGGGGTCGGGATTGA 60.683 55.000 0.00 0.00 0.00 2.57
678 687 1.675720 GGCAAATGGGGTCGGGATTG 61.676 60.000 0.00 0.00 0.00 2.67
679 688 1.381191 GGCAAATGGGGTCGGGATT 60.381 57.895 0.00 0.00 0.00 3.01
682 691 2.440247 GAGGCAAATGGGGTCGGG 60.440 66.667 0.00 0.00 0.00 5.14
683 692 2.824041 CGAGGCAAATGGGGTCGG 60.824 66.667 0.00 0.00 0.00 4.79
693 702 1.971357 AGAAGAAAGGAGACGAGGCAA 59.029 47.619 0.00 0.00 0.00 4.52
733 742 5.723672 TCTTCTCATATCCATCCGTAACC 57.276 43.478 0.00 0.00 0.00 2.85
757 766 1.202348 GGCACGCAAGGCTCTAAATTT 59.798 47.619 0.00 0.00 46.39 1.82
812 822 3.878667 GGATCGCCAAGGGGAGGG 61.879 72.222 11.64 0.00 40.35 4.30
813 823 3.878667 GGGATCGCCAAGGGGAGG 61.879 72.222 11.64 0.00 40.35 4.30
814 824 3.878667 GGGGATCGCCAAGGGGAG 61.879 72.222 23.21 0.00 40.35 4.30
815 825 4.750695 TGGGGATCGCCAAGGGGA 62.751 66.667 27.91 8.39 41.24 4.81
816 826 4.506255 GTGGGGATCGCCAAGGGG 62.506 72.222 31.10 0.00 35.15 4.79
817 827 3.727258 TGTGGGGATCGCCAAGGG 61.727 66.667 31.10 0.00 35.15 3.95
866 878 0.478507 GAGGAGAGGAGGAGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
867 879 1.421646 GAGAGGAGAGGAGGAGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
868 880 1.518367 GAGAGGAGAGGAGGAGGAGA 58.482 60.000 0.00 0.00 0.00 3.71
869 881 0.108585 CGAGAGGAGAGGAGGAGGAG 59.891 65.000 0.00 0.00 0.00 3.69
870 882 1.990160 GCGAGAGGAGAGGAGGAGGA 61.990 65.000 0.00 0.00 0.00 3.71
871 883 1.528309 GCGAGAGGAGAGGAGGAGG 60.528 68.421 0.00 0.00 0.00 4.30
872 884 1.528309 GGCGAGAGGAGAGGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
873 885 1.576368 AAGGCGAGAGGAGAGGAGGA 61.576 60.000 0.00 0.00 0.00 3.71
874 886 1.076339 AAGGCGAGAGGAGAGGAGG 60.076 63.158 0.00 0.00 0.00 4.30
875 887 0.682855 ACAAGGCGAGAGGAGAGGAG 60.683 60.000 0.00 0.00 0.00 3.69
876 888 0.624254 TACAAGGCGAGAGGAGAGGA 59.376 55.000 0.00 0.00 0.00 3.71
911 928 4.028490 GGTGGGTGGATGGACGCA 62.028 66.667 0.00 0.00 36.52 5.24
915 932 3.006728 GGTCGGTGGGTGGATGGA 61.007 66.667 0.00 0.00 0.00 3.41
923 941 3.326578 TGGTGGATGGTCGGTGGG 61.327 66.667 0.00 0.00 0.00 4.61
990 1017 0.038709 CCCTCTTCATCGGCGAGATC 60.039 60.000 17.22 0.00 37.52 2.75
991 1018 0.468214 TCCCTCTTCATCGGCGAGAT 60.468 55.000 17.22 0.00 41.01 2.75
992 1019 1.076995 TCCCTCTTCATCGGCGAGA 60.077 57.895 17.22 10.29 0.00 4.04
1269 1303 4.681978 ACGAGGCGGTGGTTGAGC 62.682 66.667 0.00 0.00 0.00 4.26
1428 1462 3.774959 ATCTGCGCCGTCATCGTCC 62.775 63.158 4.18 0.00 35.01 4.79
1590 1639 2.028523 GTCGTCAGTGATTTCAGCATCG 59.971 50.000 0.00 0.00 0.00 3.84
1633 1688 3.103911 CACGCAGAACCCGTCGTC 61.104 66.667 0.00 0.00 36.69 4.20
1723 1789 6.683090 TTGCACGTCTTATTATTTGCAAAC 57.317 33.333 15.41 0.00 44.61 2.93
1830 1903 1.066929 CACACAGGGACACGATCATCA 60.067 52.381 0.00 0.00 0.00 3.07
1831 1904 1.066858 ACACACAGGGACACGATCATC 60.067 52.381 0.00 0.00 0.00 2.92
1832 1905 0.976641 ACACACAGGGACACGATCAT 59.023 50.000 0.00 0.00 0.00 2.45
1866 1943 3.008594 AGGGACACGACCAATTAACATGA 59.991 43.478 0.00 0.00 0.00 3.07
1867 1944 3.126858 CAGGGACACGACCAATTAACATG 59.873 47.826 0.00 0.00 0.00 3.21
1868 1945 3.244770 ACAGGGACACGACCAATTAACAT 60.245 43.478 0.00 0.00 0.00 2.71
1989 2066 5.032846 ACAGGGTCTGAAGAGGAATGAATA 58.967 41.667 1.59 0.00 35.18 1.75
1998 2075 4.967036 AGAAAGAAACAGGGTCTGAAGAG 58.033 43.478 1.59 0.00 35.18 2.85
2029 2106 7.958088 TCATAAAGTGTATCCATCCATTCGTA 58.042 34.615 0.00 0.00 0.00 3.43
2047 2125 9.304731 CCACATCCACACATTTTATTCATAAAG 57.695 33.333 0.00 0.00 34.13 1.85
2087 2198 9.918630 AATTTTGTCATGGTCTGAAGAAATAAG 57.081 29.630 0.00 0.00 35.07 1.73
2090 2201 9.082313 ACTAATTTTGTCATGGTCTGAAGAAAT 57.918 29.630 0.00 0.00 35.07 2.17
2098 2209 5.241506 CCACACACTAATTTTGTCATGGTCT 59.758 40.000 0.00 0.00 30.36 3.85
2107 2218 6.317789 AGACACATCCACACACTAATTTTG 57.682 37.500 0.00 0.00 0.00 2.44
2115 2226 2.549754 CCAGAAAGACACATCCACACAC 59.450 50.000 0.00 0.00 0.00 3.82
2121 2232 2.069273 CACGTCCAGAAAGACACATCC 58.931 52.381 0.00 0.00 36.52 3.51
2122 2233 1.461127 GCACGTCCAGAAAGACACATC 59.539 52.381 0.00 0.00 36.52 3.06
2135 2246 5.344933 GGAAATCAATTAAAAGTGCACGTCC 59.655 40.000 12.01 0.00 0.00 4.79
2136 2247 6.149633 AGGAAATCAATTAAAAGTGCACGTC 58.850 36.000 12.01 0.00 0.00 4.34
2138 2249 6.863126 AGAAGGAAATCAATTAAAAGTGCACG 59.137 34.615 12.01 0.00 0.00 5.34
2153 2264 8.908903 TGTAGTCTCTCTATCAAGAAGGAAATC 58.091 37.037 0.00 0.00 0.00 2.17
2164 2275 8.381636 TCAGATCATCATGTAGTCTCTCTATCA 58.618 37.037 0.00 0.00 0.00 2.15
2165 2276 8.791327 TCAGATCATCATGTAGTCTCTCTATC 57.209 38.462 0.00 0.00 0.00 2.08
2168 2279 7.039574 CCATTCAGATCATCATGTAGTCTCTCT 60.040 40.741 0.00 0.00 0.00 3.10
2169 2280 7.092079 CCATTCAGATCATCATGTAGTCTCTC 58.908 42.308 0.00 0.00 0.00 3.20
2178 2289 4.093556 CGATCAGCCATTCAGATCATCATG 59.906 45.833 0.00 0.00 37.51 3.07
2180 2291 3.556423 CCGATCAGCCATTCAGATCATCA 60.556 47.826 0.00 0.00 37.51 3.07
2249 2367 4.763073 TCCAGCATTCTCTACAGAACATG 58.237 43.478 0.00 0.00 41.64 3.21
2269 2390 0.958382 TAACCACACGGCTTGCATCC 60.958 55.000 0.00 0.00 34.57 3.51
2280 2401 2.898705 CTGGAGATGCTCTAACCACAC 58.101 52.381 0.00 0.00 0.00 3.82
2283 2404 0.833287 GGCTGGAGATGCTCTAACCA 59.167 55.000 0.00 0.00 0.00 3.67
2298 2419 2.521547 AAGATTTGAGGGAAGGGCTG 57.478 50.000 0.00 0.00 0.00 4.85
2341 2462 2.412847 GGTCGCTCACAGAAAAATTCCG 60.413 50.000 0.00 0.00 0.00 4.30
2343 2464 2.552315 TGGGTCGCTCACAGAAAAATTC 59.448 45.455 0.00 0.00 0.00 2.17
2377 2773 4.640201 CCACCATTGAAACTAACATCGGAT 59.360 41.667 0.00 0.00 0.00 4.18
2378 2774 4.006989 CCACCATTGAAACTAACATCGGA 58.993 43.478 0.00 0.00 0.00 4.55
2393 2789 1.281419 TGGTATCACGACCCACCATT 58.719 50.000 0.00 0.00 38.89 3.16
2433 2829 0.891904 CCCAAAACCCGACGGAACAT 60.892 55.000 17.49 0.00 0.00 2.71
2438 2834 2.670592 GTCCCCAAAACCCGACGG 60.671 66.667 6.99 6.99 0.00 4.79
2440 2836 2.111669 ACGTCCCCAAAACCCGAC 59.888 61.111 0.00 0.00 0.00 4.79
2445 2841 1.746787 ACAAGAACACGTCCCCAAAAC 59.253 47.619 0.00 0.00 0.00 2.43
2447 2843 1.746220 CAACAAGAACACGTCCCCAAA 59.254 47.619 0.00 0.00 0.00 3.28
2449 2845 0.464735 CCAACAAGAACACGTCCCCA 60.465 55.000 0.00 0.00 0.00 4.96
2509 2906 1.419762 TGGAAGCTAGCAACCAGTTCA 59.580 47.619 22.86 6.09 0.00 3.18
2600 2997 1.451207 AAGCGTCCACAGCACAACA 60.451 52.632 0.00 0.00 37.01 3.33
2619 3016 1.131126 CAACACGTCAGATGAATGGCC 59.869 52.381 0.00 0.00 0.00 5.36
2656 3055 5.903810 AGGATACGAAAACTAGGCTGTTAG 58.096 41.667 0.00 0.00 46.39 2.34
2672 3071 2.229675 TTGCAGCTCATGAGGATACG 57.770 50.000 23.89 0.00 46.39 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.