>input_sequence_70901
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-------------------------------------------------------------------------ATGAAGA
GGGAGGGGTTCCAGCACGGCGCCGTCCGGGTCAACCGCAACAAGCTGCTGCGGGTCGCCGGCGGCACCAACGGCGACGCG
GCGGCCGCGGCGCTGGAGCTCGCCGGCGTCGCCTACGCCAGGGCGCCGTCCAAGCCGACCAACGCGTCCAGGGACACGGG
CCGGTGCCGGCGGCCCCGGTGCGCCGGCTGCCACGTGCACCCCGCCGCCAAGGCCCGGGACAAGGCCAAGGGCGCCCACA
AGCTGCGCGCCTCCGACGTCGCGCTCAACCACCGCCTCGTCTCCTGGCGCCTCGTCGACGGGGACCCCGCCGCCGCCGCC
GCCCGCACCGGCGGCGTGCCCGACTACAAGGGCGCCTCCGCGTCCGCCGTGCTCGCCTACCTCGCCGGCGGCAACAGCTG
GCACGCCGAGGACGAGGAGGAGGACGAT---------GACG---GCGCAGATCTTCAGGCCCCCCCAAGGGGGATCTCCG
ACCTGTACGACCTCATCGTCGGCCTCCAGGCCCGC---GCGGCCCCTGCGCCGGGCGGCCCAGAAGACGACGCCGATGGC
ACGGCAGCAGTAACACCCAGCGATGAAATCGAGGAGCACGATGCTGAAATCACTGA------CGACGCCGACGAGGAGGA
GGAGGACGACGACGGGTTCTGCGTGGTGCAGGGCATCACCATCGCGCTCGAGTTCTCCGACGGGGAGGAGGACTGGATCG
TGGTCTGA------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G524000
GCGTGCATGGAGTTTCAGTTTGTTACGTGACAGGATATGCTCAAGCATTTTGCCGCAAAAAAAAAAAAAGGATATGCTCA
AGCATCAGACTGGGAATTATCTGAACTGATGCATGTGTCCATGCAATATTTCCAACTCATTTCTGTTCCCTAAGAGTATG
AAACACGCAGTGAAGAATGCAGTGCATAGATTTGAGTTTTCCTTTTTTTTTAATAGGAGTACTTCTTAAGCATGAAATAT
GTTCTACTCCCTCAGTTTGGAATTTTCTTGTTAGGAATATAATAGTATTAGTATTTGGCTAATTAGGCGATTAGCAGATT
CTTTAGAATATTCTAACCGGTAGTTAGAATCCTGGCGTTGTCCAGACGCAGTAGATAGCGAACCATCGCCATGTTTTTTT
CAAACCAGCGTTGTGTCTTTCCGAAACGACGCGAACCTTGTAATCGGCATGTAAACACGACGGCTCGGGACATATAAGTA
CCTGCAGTCACTATCAATGAAATCAATCCTTTCACTTCAATCTTTCTTGTTTCTCTTCATTTCTCATCTATTTCCGTGAC
AAGTAATTGAGGGAGTCGGTGGCTTTGCTGCAAAACTGAAGACTGGCACAAGATCCGTGTACACGGCGTAGCACATTCCG
GGACGATACCGCATATGTGCGAATGT--------GCGATTACTTATCAATCCCGACCCCATTTGCCTCGTCTCCTTTCTT
CTTCTTATTAAAAGCCATTTTGGTTACGGATGGATATGAGAAGAAAAATTTAGAGCCTTGCGTGCCCACACCGCCCTT-G
ACCACACCCCACCACCAACCGCCCTCCCCTTGGCGATCCCCACACACTTGCCCAACCAACCACAC--TTGTCCCACGCCT
CTCCTCCTCCTCTCCTCTCGCCTTGTACGAGTCTC-----ACCTTGCTGCGTCCA-TCCACCCACCGACCATCC-----A
CCACTTCCCCCAAAGTCTCCTCCTTTC----TCCCTTCTCAGCCAAGCAACCAAGCGATC-------TCGCCGATGAAGA
GGGAGGGGTTCCAGCACGGCGCCGTCCGGGTCAACCGCAACAAGCTGCTGCGGGTCGCCGGCGGCACCAACGGCGACGCG
GCGGCCGCGGCGCTGGAGCTCGCCGGCGTCGCCTACGCCAGGGCGCCGTCCAAGCCGACCAACGCGTCCAGGGACACGGG
CCGGTGCCGGCGGCCCCGGTGCGCCGGCTGCCACGTGCACCCCGCCGCCAAGGCCCGGGACAAGGCCAAGGGCGCCCACA
AGCTGCGCGCCTCCGACGTCGCGCTCAACCACCGCCTCGTCTCCTGGCGCCTCGTCGACGGGGACCCCGCCGCCGCCGCC
GCCCGCACCGGCGGCGTGCCCGACTACAAGGGCGCCTCCGCGTCCGCCGTGCTCGCCTACCTCGCCGGCGGCAACAGCTG
GCACGCCGAGGACGAGGAGGAGGACGAT---------GACG---GCGCAGATCTTCAGGCCCCCCCAAGGGGGATCTCCG
ACCTGTACGACCTCATCGTCGGCCTCCAGGCCCGC---GCGGCCCCTGCGCCGGGCGGCCCAGAAGACGACGCCGATGGC
ACGGCAGCAGTAACACCCAGCGATGAAATCGAGGAGCACGATGCTGAAATCACTGA------CGACGCCGACGAGGAGGA
GGAGGACGACGACGGGTTCTGCGTGGTGCAGGGCATCACCATCGCGCTCGAGTTCTCCGACGGGGAGGAGGACTGGATCG
TGGTCTGATCTCATTC-----------AGTTTGCAAATAATAAGACGTGCAACAGAG----GTCAGCCGTCCGCATCCCT
CCGCCTCTGCTGCC---GCTGCGCAATTCCCTTCCATCCGCATCTGCTCTGTTCCTGTTAATTGATGATCGTGTCCC--T
GTGTGTATACTGCTCTGTT--GTCATGTTAATTGGTCGTGTCCCTGTGTATATATCTGGTGACTGTCTGTCTAATTTGTC
AAAAATTCATGGATTATCATGACCTGAATCTATCAATCATGTGTGAATAAAATTAATGAAGAAGTTATTCATTCCTCTTC
AGACCCTGTTTCTTTCTTTCTGATTTAC-GAATGGATGGATACACTTTATGAAT--------------------------
-------AAAATGTGTGGATGTGGATTCATCTGAATGCTTATTTCTTCAGACCATGACAAAATTAGTGTGTGGATGTGTC
TTTCTGGACGTGCACTTTTAATTGATTTCCTTCTTGATAGAGAGACTACATGATGATCTGAATGGCTGATCGGCTTTCGG
T-------TTGTGATGAAATCTGGTGAATTCAGTTCTTGATGTGGCCATGTTCTGTAGAGAATGCT---GGATGCAAGCC
GTGTGGTTAGAGCATCTCCAGCCCTTCCCTCAAATCTTTATAACAAGAGGCAAATTGTGTCCGGAATTTTTCTGTGAGCG
AC------------------------------------------------------------------------------
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-------------------------------------CCATTTGCCTTCACCATCCGATGTTAGTTTCAATGGTGGGTCG
TGATACCAAAGCAACAGTTTCGATGCGAATGTTCCGTCGGGTTTTGGGGACGTGTTC-TTGTTGGTCAGTATCGGTCATT
GGCTGTTTTACCTTGACACCTCTGGTGAACTGGTTGCTAGCTTCCAAGACTCATGTGCCTGTAAGCATCGGCTCAAACAA
ACTCTTGTTCCGCATGGTTTCTTCACGGCACCAGAATGTTGTGCTGTGGACGCTTGGCCATTCATCTGACG-TGTTGAGT
GAGGCGGT-GCTTCCTAACAGCCTAGTTTTC-GTATCCTCATGAGCTGCAATTTCTATGATCTCTTCCTTTAG
>chr3A_1
GCGTGCATGAAGTTTCAGTCTGTTACGTGACAGGATATGC-------------------------------------TCA
AGCATCAGAGTTGGAATTATCTGAACTGATGCATGTGTCCATGTAATATTTCCAACACATTTCTGTTCCCTAAGGTTACG
AAACACGCTGTGAAGAATGCACTGCATAGATTTTGGGACATGTGTGAGCGAAACAAGTAAGACAGAGTCATTAA------
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---------AAAAGCCATTTTCCTTAC------------------------------------------ACCGCCCTTAG
ACCACACCCCATCACCAACCGG-----CGTTGGCGATCCCCACACACTTGGCCAACCAACCACAC--TTGTCCCACG---
--------CCTCTCCTCTCGCCTTGTACCAGTCTCGTCTCACCTTGCCGCGCCCAATCCAACCACCGACCATCC-----A
CCACTTCCCCCAAAGTCTCCTCCTTTCATCCTCCCTTCTCAGCCAAGCAAACGCCAACCG--------CGCCGATGAAGA
GGGAGGGGTTCCAGCACGGCGCCGTCAGGGTCAACCGCAACAAGCTGCTGCGGGTCGCCGGCGGGACCGGCGGCGACGCG
GCGGCCGCGGCGCTCGACCTCGCCGGCGTCGCCTACGCCCGGGCGCCGTCCAAGCCGACCAACGCGTCCAGGGACACGGG
CCGGTGCCGCCGGCCCCGGTGCGCCGGCTGCCACGTGCACCCCGCCGCCAAGGCCCGGGACAAGGCCAAGGGCGCCCACA
AGCTGCGCGCCTCCGACGTCGCCCTCAACCACCGCCTCGTCTCCTGGCGCCTCGTCGACGGGGACGCCTCCGCCGCCGCC
GCCCGCACCGGCGGCGTCCCCGACTACAAGGGCGCCTCCGCGTCCGCCGTCCTCGCCTACCTCGCCGGCGGCAACAGCTG
GCACGCCGAGGACGAGGACGATGACGATGAGGACCAGGACG---GCGCCGATCTTCAGGCCCCCCCAAGGGGGATCTCTG
ACCTGTACGACCTCATCGTCGGCCTCCAGGCCGGCGCGGCGGCCCCTGCGCCGGGCGGCCCAGAAGACGACGCCGATGGC
ACGGCAGCAGTAACACCCAGCGATGAAATCGAGGAGCAGGATGCTGAAATCACTGA------CGATGTCGACGAGGAGG-
--------ACGACGGGTTCTGCATGGTGCACGGCATCACCATCGCGCTCGAGTTCTCCGGCGGGGAGGAGGACTGGATCG
TGGTCTGATCTCATTC-----------A-TTTGCAAATAATAAGACGTGCAACAGAG----GTCAGCCGTCCACATCCCT
CCGCCTCTGCTGCTGCCGCTGCGCAATTCCCTTCCATCCGCATCTGCTCTGTTCCTGTTAAT---TCATCGTGTCCCTGT
GTGTGTATACTGCTCTGTT--GC--TGTTAATTGGTCCTGTCCCTGTGTATATATCTGGTGACTGTCTGTCTAATTTGTC
AAAAATTCATGGATTATCATGACCTGAATTTACCAATCATGTGTGAATAAAATTAATGAAGAAGCGATTCATTCGTCTTC
AGACCCTGTTTCTTCCTCTCTGATTGACTGAATGGATGGATACTGG----------------------------------
-------------------TGTGGATTCTTCCCC--------------------------------------------TC
TTTCTAAATGCGCACTTTCAATTAATTTCCTTGTCAGT--AGAGACTATACCATGATCTGAATGGCTGATCGGCTTTCGG
T-------TTGTAATGAAATCTGGTAAATTCAGTTCTTGATGCAGCAATGTTTTATTGAGAATGAT---AGATGCAAGCA
TTGCGGTTAGAGCATCTCTAGCCATTACCTCAAATCTTTATAACAAGAAGCAAATTGTGTCTGTAATTTTTCTGTGAGAC
TAGCCATAATGGGAGTAACTTAACTAGTAACATCACACATTTCAATACAAGATTGCTTATGTGGCAGCTAATTAATGAGG
AGAGAGGGGTTTGTGGTAACTTAGCTAGTTACTGTAACATCACACATTTCAAGGCATAATGAGTCTATAACCTAATAAAT
AAACTCTTTCATGATACCACTCATATGTTACTACCCATTATGGAGGTAGTAATATAGACTAGTAACATCGACAAGTTACT
ACTCTATGTTACTCCCCACTGTGAGCAGTCTGAGCGACCATTTGCCTTCACCGGCCGACGTTAGTTTCGATGGTGGGTCG
TGATACCAAAGCAACAGTCTTGGTGCGACCGTTGATTCAGATATCGGGAATGTGTTCTTTGTTGGTTAGTATCCGTCATT
GGCTGTTTTACCTTGACACTTGTGGCGAACTGGTTGCTCGCTTCCAAGACTCCTGTGCCTGTAAGGATCGGCTCAAACAA
ACTCTTGTTCCGCATGATTTCTTCCCGGCACCAGAAGGTTGTGCTGTGGACGCTTCCCCATTCATCTGACG-TGTTGAGT
GAGGCGGTTGCTTCTTAACAGCCAGGTTTTT-GCATCCTCATGAGCTGC------------------------
>chrUn_569
GAGGGAGTAGT---------------------------------------------------------------------
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-------------------TGGCTTTGCCGCAAAACTGAAGACTGGCCCTAGATCCGTGTGCACTCCGTAGCACATTCCG
GGACGATACCGCGTATGTGCGAATGTGCGAATGTGCGATTACTTACTTATGTCGACCCCATCTGCCTCGTCTTTCTTCT-
-TTCTTATTAAAAGCCATTTTCGTTACGGATGGATATGAGAAGAAGAATTTAGAGCCTTGCGTGCCCACACCGCCCTT-G
ACCACACCCCACCACCAACCGG-----CCTTGGCGACTCCCACACACTTGCCCAACCAACCACACACTTGTCCCACG---
--------CCTCCCCTCTCCCCTTGTAGGAGTACC-----ACCCTGCCGC-----ATCCAACCACCGACCATCCACCATA
CCACTTCCCCCAAAGTCTCCTCCTTTC----TCCCTTC----CCAACCCAACGCCCACCCAAATCCATCGCCGATGAAGA
GGGAGGGCTTCCAGCACGGCGCCGTCCGGGTCAACCGCAACAAGCTGCTGCGGGTGGCCGCCGGCACCGGCGGCGACGCG
GCGGCCGCGGCGCTGGAGCTCGCCGGCGTGGCGTACGCCAGGGCGCCGTCCAAGCCGACCAACGCGTCCAGGGACACGGG
CCGGTGCCGCCGGCCCCGCTGCGCCGGCTGCCACGCGCACCCCGCCGCCAAGGCCCGGGACAAGGCCAAGGGCGCCCACA
AGCTGCGCGCCTCCGACGTCGCCCTCAACCACCGCCTCGTCTCCTGGCGCCTCGTCGACGGCGTTGGGAACGCTCCGGCT
G---GCACCGGCGGCGTGCCCGACTACAAGGGCGCCTCCGCCTCCGCCGTGCTCGCCTACCTCGCCGGCGGCAACAGCTG
GCACGCCGAGGACGAGGACGACGACGACGAGGACCAGGACGACGGCACCGACCTTCAGGCCCCCCCAAGGGGGATCTCCG
ACCTGTACGACCTCATCGCCGGCCTCCAGGCCAGCGCGG---CCCCTGCGCCGGACGGCCAAGAAGATGGCAACAACATA
T------CAGTAACACCCAGCGATGAAATCGAGGAGCAGGATGCCGAAATCACCGACGACGCCGACGCCGACGAGGAGGA
GGAGGACATG---GGGTTCTGCGTGGTGCAGGGCATCACCATCGCGCTCGAGTTCTCCGACGGGGAGGAGGACTGGATCG
TGGTCTGATCTCACCCGATCTCATTCAA-TTTGCAAATAATAAGACGTGCAACAGAGAGAGGTCAGCCGCCCGCATCCCC
CCGCCTCTGCTGCT---GCTGCGCAATTCCCTTCCATCCGCATCTGCTCT---CCTGTTAAT---TGATCGTGTCCC--T
GTGTGTATACTGCTCTGTTCTGC--TGTTAATTGGTCGTGTCCCTGTGTATATATCTGGTGACTGTCTGTCTAATTTGTC
AAAAATTCATGGATTATCATGACCTGAATTTATCAAACATGTGTGAATAAAATTAATGAAGAAGTGATTCGTTCTTCTTC
ACACCCTGTTTCTTTCTTTCTGATTGATTGAATGGATGGATACATTTTATGAATGATGTTTGAGGATGTGTAGATGCACT
TTCTGATAAAATGTGTGGATGTGGATTCATCTGAATGTTTGTTTCTTCGGACCATGATAAAATTAATGTGTTTATGTGTC
TTTCTAAATGTGCACTTTTCATTAGTTTTCTTCTGAAA--AGAGAATATGCGATGATCTGAATGGCTGACCGGCTTTCGG
TTTGTGAATTGTGATGAAATCTGGTGAATTCGCTTCTTGATATGGCAATGTCTTGTCGAGAATGCTAGTAGATGCAAGTC
ACGCGGTTAGAGCATCTCTAGCCCTTCCCTCAAATCTTTATAACAAGAGGCAAATTGTGTCTGCAATTTTTCTGTGAGCG
AC------------------------------------------------------------------------------
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-------------------------------------CCATTTGCCTTCACCTGCCAATGTTAGTTTCGATGGCGAGTCC
TGATACCAAAGCAACAGTTTCGATGCGAGTGTTGCTTCGGATGTAGGGGACGTGTTC-TTGTTGGTCAGTATCGGTCATT
GGCTGTTTTACCTTGACACCTCTGGCGAACTGGTTGCTAGCTTCCAAGACTCATGTGCCTGTAAGCATTGGCTCAAACAA
ACTCTTGTTCCGCATGGTTTCTTCACGGCACCAGAAGGTTGTGCTGTGGACGCTTCGCCATTCATCTGACGCTGTTGAGC
GAGGTGCT-GCTTCTTAACAGCCTAGTTTTTTGTATCCTCATGAGCTGCAATGTGTATGA-------------
>SNPs
-------------------S--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
---------S-S-------------------------------S------------S-----------------SS--S-
--------S------------S-----------SS-SSSSSS-S-SSSSSS--S-S-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---------S------------------S-S----------S---SS--------------
------------S--------------------------------SSS--SS---------S----------SSS----S
S--------------------S-----------------------S----------------------------------
---------------------SSSSSS--------------------------------------------------SSS
SSSSSSSS---------------------------------------S---S--------S-------------------
--------------------------------------------------S-SSS-SSS---------------------
--------------------------------------------------------------------SS----------
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---------S----------------------------------------------------------------------
----------------------S------------------------------------------S--S-----------
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------------------S--S--------------------------S-------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------S-----------------------------------------
-------S------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-------------S------------------------------------------------SSS---------------
----------------------SSS-------------------------------------------------------
-----------------------------S-----------------------------------S--------S-----
-------------------------S------------------S-----------------------------------
-------------------------------------S--S-------S--------S-------S-----SS-------
-----SS-S--------------S----------SS--SS--------S-S-----------------------------
----------------------------------------------S-----S---S------------S----------
S--S--------------S------------------------------------------S-S----------------
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----------------------------------------------------SS--------------S-----------
----------------------------S----S-S----S-S-S-----------------------------------
-------------------------S------------------------------------------------------
------------------------------------S------------------S------------------------
--------------S---------------S---------------------S-S-----SSSSSSSSSSSSS
>forward_466
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----------------------------------------------GCATGTAAACACGACGGCTC--------------
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>reverse_2845
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--------------------------------------------TGGGGACGTGTTCTTGTTGG----------------
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