Multiple sequence alignment - TraesCS3D01G519200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G519200 chr3D 100.000 5037 0 0 1 5037 602198160 602203196 0.000000e+00 9302
1 TraesCS3D01G519200 chr3D 85.065 154 19 4 1219 1370 484341042 484341193 2.430000e-33 154
2 TraesCS3D01G519200 chr3A 91.795 2913 131 48 786 3640 730940720 730937858 0.000000e+00 3956
3 TraesCS3D01G519200 chr3A 91.806 537 24 5 3766 4287 730937825 730937294 0.000000e+00 730
4 TraesCS3D01G519200 chr3A 84.036 332 41 7 5 329 730941556 730941230 4.900000e-80 309
5 TraesCS3D01G519200 chr3A 87.097 217 23 4 452 665 730940935 730940721 1.810000e-59 241
6 TraesCS3D01G519200 chr3A 90.000 120 12 0 666 785 708952470 708952351 6.750000e-34 156
7 TraesCS3D01G519200 chr3A 83.766 154 21 4 1219 1370 627270763 627270914 5.260000e-30 143
8 TraesCS3D01G519200 chr3B 88.397 2758 200 57 786 3489 809119027 809121718 0.000000e+00 3210
9 TraesCS3D01G519200 chr3B 89.716 1303 70 20 3773 5037 809122461 809123737 0.000000e+00 1605
10 TraesCS3D01G519200 chr3B 95.082 183 6 1 3513 3692 809122132 809122314 8.250000e-73 285
11 TraesCS3D01G519200 chr3B 84.416 154 20 4 1219 1370 647170991 647171142 1.130000e-31 148
12 TraesCS3D01G519200 chr3B 93.939 66 4 0 369 434 809118603 809118668 3.210000e-17 100
13 TraesCS3D01G519200 chr7B 90.909 121 11 0 666 786 476632538 476632418 4.030000e-36 163
14 TraesCS3D01G519200 chr7B 88.710 124 14 0 666 789 577804594 577804471 8.730000e-33 152
15 TraesCS3D01G519200 chr1A 90.083 121 12 0 666 786 63847457 63847577 1.880000e-34 158
16 TraesCS3D01G519200 chr1A 90.083 121 12 0 666 786 204838151 204838031 1.880000e-34 158
17 TraesCS3D01G519200 chr2B 90.000 120 12 0 666 785 492706900 492707019 6.750000e-34 156
18 TraesCS3D01G519200 chr7A 89.916 119 12 0 667 785 207295802 207295684 2.430000e-33 154
19 TraesCS3D01G519200 chr1B 88.372 129 13 2 657 785 323950021 323950147 2.430000e-33 154
20 TraesCS3D01G519200 chr6B 87.879 132 13 3 654 785 341547688 341547816 8.730000e-33 152
21 TraesCS3D01G519200 chr5D 83.333 144 20 4 1219 1360 79988184 79988325 4.090000e-26 130
22 TraesCS3D01G519200 chr6A 79.730 148 24 4 1219 1363 251475352 251475208 8.920000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G519200 chr3D 602198160 602203196 5036 False 9302 9302 100.0000 1 5037 1 chr3D.!!$F2 5036
1 TraesCS3D01G519200 chr3A 730937294 730941556 4262 True 1309 3956 88.6835 5 4287 4 chr3A.!!$R2 4282
2 TraesCS3D01G519200 chr3B 809118603 809123737 5134 False 1300 3210 91.7835 369 5037 4 chr3B.!!$F2 4668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 951 0.323360 TGCTATGTGGGCCTGTTTCC 60.323 55.000 4.53 0.0 0.00 3.13 F
752 980 0.388134 CACCTGTTAGTGGTCGGACG 60.388 60.000 1.43 0.0 35.28 4.79 F
2286 2610 0.107066 ATCCAGGTGAATGCGATGCA 60.107 50.000 0.00 0.0 44.86 3.96 F
2475 2800 1.079127 CCGGTTCAGTGGTAGCTGG 60.079 63.158 0.00 0.0 37.12 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2357 1.159713 TCATAAGAATGGGCGCGCAG 61.160 55.000 34.42 16.29 33.61 5.18 R
2350 2675 2.288666 TGTCAGGCAAAGTGTTGAGTC 58.711 47.619 0.00 0.00 36.83 3.36 R
3147 3503 0.104777 TGGCCTCTGCAGGATCCTAT 60.105 55.000 15.67 0.00 43.65 2.57 R
4465 5343 0.250295 TTGTCACAGTGTAGGCAGGC 60.250 55.000 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.806668 AATAATGGGGTTTGGTATCAAAGG 57.193 37.500 0.12 0.00 42.78 3.11
30 31 3.513515 GGGTTTGGTATCAAAGGCAATGA 59.486 43.478 0.12 0.00 42.78 2.57
39 40 3.443052 TCAAAGGCAATGAATCACCCAT 58.557 40.909 0.00 0.00 0.00 4.00
53 54 3.417101 TCACCCATCACACCACATAAAC 58.583 45.455 0.00 0.00 0.00 2.01
61 62 6.705381 CCATCACACCACATAAACAAAACATT 59.295 34.615 0.00 0.00 0.00 2.71
98 99 2.617532 GGGATATCTTGATGCTCCAGGC 60.618 54.545 2.05 0.00 42.22 4.85
117 118 6.045459 TCCAGGCACAAATACCATATATTCCT 59.955 38.462 0.00 0.00 0.00 3.36
123 124 9.035607 GCACAAATACCATATATTCCTATCTCG 57.964 37.037 0.00 0.00 0.00 4.04
131 132 7.286546 ACCATATATTCCTATCTCGACATCTGG 59.713 40.741 0.00 0.00 0.00 3.86
140 141 6.599638 CCTATCTCGACATCTGGTACATATGA 59.400 42.308 10.38 0.00 44.32 2.15
142 143 6.259550 TCTCGACATCTGGTACATATGATG 57.740 41.667 10.38 4.04 44.32 3.07
144 145 5.772521 TCGACATCTGGTACATATGATGTG 58.227 41.667 19.48 14.05 46.78 3.21
154 155 7.460910 TGGTACATATGATGTGAATAATGGCT 58.539 34.615 10.38 0.00 44.60 4.75
155 156 7.607607 TGGTACATATGATGTGAATAATGGCTC 59.392 37.037 10.38 0.00 44.60 4.70
170 171 9.455847 GAATAATGGCTCTTTGCTAATTAACAG 57.544 33.333 0.00 0.00 42.39 3.16
173 174 3.443681 GGCTCTTTGCTAATTAACAGCCA 59.556 43.478 10.44 0.00 43.98 4.75
176 177 5.106157 GCTCTTTGCTAATTAACAGCCAGAA 60.106 40.000 8.10 1.76 38.29 3.02
177 178 6.500684 TCTTTGCTAATTAACAGCCAGAAG 57.499 37.500 8.10 9.15 38.29 2.85
179 180 6.372659 TCTTTGCTAATTAACAGCCAGAAGAG 59.627 38.462 8.10 0.00 38.29 2.85
181 182 6.294361 TGCTAATTAACAGCCAGAAGAGTA 57.706 37.500 8.10 0.00 38.29 2.59
183 184 6.070767 TGCTAATTAACAGCCAGAAGAGTACT 60.071 38.462 0.00 0.00 38.29 2.73
185 186 7.435784 GCTAATTAACAGCCAGAAGAGTACTAC 59.564 40.741 0.00 0.00 32.68 2.73
186 187 6.852420 ATTAACAGCCAGAAGAGTACTACA 57.148 37.500 0.00 0.00 0.00 2.74
187 188 4.792521 AACAGCCAGAAGAGTACTACAG 57.207 45.455 0.00 0.00 0.00 2.74
188 189 2.494073 ACAGCCAGAAGAGTACTACAGC 59.506 50.000 0.00 0.00 0.00 4.40
210 211 3.373130 CGCATTGCATGATACCCTATCTG 59.627 47.826 9.69 0.00 36.17 2.90
211 212 4.330250 GCATTGCATGATACCCTATCTGT 58.670 43.478 3.15 0.00 36.17 3.41
254 262 8.757164 AAATAAAGCTTGAAAAATAAGACGGG 57.243 30.769 0.00 0.00 0.00 5.28
256 264 5.629079 AAGCTTGAAAAATAAGACGGGAG 57.371 39.130 0.00 0.00 0.00 4.30
309 317 1.931841 CTGAGATGCTCCATGTCAACG 59.068 52.381 6.52 0.00 42.17 4.10
316 324 2.499693 TGCTCCATGTCAACGATTCCTA 59.500 45.455 0.00 0.00 0.00 2.94
317 325 3.055458 TGCTCCATGTCAACGATTCCTAA 60.055 43.478 0.00 0.00 0.00 2.69
319 327 5.163353 TGCTCCATGTCAACGATTCCTAATA 60.163 40.000 0.00 0.00 0.00 0.98
320 328 5.758296 GCTCCATGTCAACGATTCCTAATAA 59.242 40.000 0.00 0.00 0.00 1.40
329 337 8.411683 GTCAACGATTCCTAATAACTTCCTCTA 58.588 37.037 0.00 0.00 0.00 2.43
342 350 8.865420 ATAACTTCCTCTATATAACTGAGCGA 57.135 34.615 0.00 0.00 0.00 4.93
343 351 6.563222 ACTTCCTCTATATAACTGAGCGAC 57.437 41.667 0.00 0.00 0.00 5.19
344 352 5.179742 ACTTCCTCTATATAACTGAGCGACG 59.820 44.000 0.00 0.00 0.00 5.12
346 354 5.303165 TCCTCTATATAACTGAGCGACGAA 58.697 41.667 0.00 0.00 0.00 3.85
363 371 4.124851 ACGAAGTCTCTCTCTCTCTCTC 57.875 50.000 0.00 0.00 29.74 3.20
364 372 3.769844 ACGAAGTCTCTCTCTCTCTCTCT 59.230 47.826 0.00 0.00 29.74 3.10
366 374 4.098654 CGAAGTCTCTCTCTCTCTCTCTCT 59.901 50.000 0.00 0.00 0.00 3.10
367 375 5.596845 GAAGTCTCTCTCTCTCTCTCTCTC 58.403 50.000 0.00 0.00 0.00 3.20
373 465 2.093181 TCTCTCTCTCTCTCTCAACCCG 60.093 54.545 0.00 0.00 0.00 5.28
451 543 5.694674 TTTCTTTCGTTTCATTGCACAAC 57.305 34.783 0.00 0.00 0.00 3.32
453 545 4.101942 TCTTTCGTTTCATTGCACAACAC 58.898 39.130 0.00 0.00 0.00 3.32
454 546 2.098215 TCGTTTCATTGCACAACACG 57.902 45.000 0.00 0.00 0.00 4.49
455 547 1.398739 TCGTTTCATTGCACAACACGT 59.601 42.857 0.00 0.00 0.00 4.49
457 549 2.213131 CGTTTCATTGCACAACACGTTC 59.787 45.455 0.00 0.00 0.00 3.95
458 550 3.175152 GTTTCATTGCACAACACGTTCA 58.825 40.909 0.00 0.00 0.00 3.18
459 551 3.706802 TTCATTGCACAACACGTTCAT 57.293 38.095 0.00 0.00 0.00 2.57
463 674 2.929531 TGCACAACACGTTCATTTGT 57.070 40.000 0.00 0.00 33.69 2.83
467 678 3.730662 GCACAACACGTTCATTTGTCAGT 60.731 43.478 0.00 0.00 30.98 3.41
493 704 2.291365 TGTCGCGCTGTATAGGAAGTA 58.709 47.619 5.56 0.00 0.00 2.24
502 713 5.527582 CGCTGTATAGGAAGTATTTTTGCCT 59.472 40.000 0.00 0.00 0.00 4.75
514 725 1.264295 TTTTGCCTGCCATATGTGCA 58.736 45.000 15.29 15.29 37.17 4.57
529 740 1.957177 TGTGCAGCCAAATTTCGGTTA 59.043 42.857 0.00 0.00 0.00 2.85
562 779 2.282674 TAGCACCCCGACGTCTGT 60.283 61.111 14.70 5.22 0.00 3.41
572 789 2.182825 CCGACGTCTGTATTCTTTCCG 58.817 52.381 14.70 0.00 0.00 4.30
590 813 7.651808 TCTTTCCGTAATAATACTTCTACCGG 58.348 38.462 0.00 0.00 0.00 5.28
606 829 2.477880 CGGCTTCGGCTTTGGTAAT 58.522 52.632 0.00 0.00 41.44 1.89
659 887 0.804989 GGATTGTGTTTGCTCCCGAG 59.195 55.000 0.00 0.00 0.00 4.63
665 893 1.223487 GTTTGCTCCCGAGGGCATA 59.777 57.895 2.58 0.00 38.30 3.14
666 894 0.815615 GTTTGCTCCCGAGGGCATAG 60.816 60.000 2.58 0.00 38.30 2.23
667 895 2.608970 TTTGCTCCCGAGGGCATAGC 62.609 60.000 12.02 12.02 38.30 2.97
668 896 4.671569 GCTCCCGAGGGCATAGCG 62.672 72.222 2.58 0.00 34.68 4.26
669 897 3.996124 CTCCCGAGGGCATAGCGG 61.996 72.222 2.58 0.00 44.42 5.52
672 900 4.671569 CCGAGGGCATAGCGGCTC 62.672 72.222 5.39 0.00 38.46 4.70
673 901 4.671569 CGAGGGCATAGCGGCTCC 62.672 72.222 5.39 0.83 40.90 4.70
674 902 4.321966 GAGGGCATAGCGGCTCCC 62.322 72.222 15.60 15.60 40.90 4.30
675 903 4.888325 AGGGCATAGCGGCTCCCT 62.888 66.667 19.26 19.26 43.98 4.20
676 904 3.878667 GGGCATAGCGGCTCCCTT 61.879 66.667 15.99 0.00 40.90 3.95
677 905 2.592861 GGCATAGCGGCTCCCTTG 60.593 66.667 5.39 1.68 37.17 3.61
678 906 2.505982 GCATAGCGGCTCCCTTGA 59.494 61.111 5.39 0.00 0.00 3.02
679 907 1.889573 GCATAGCGGCTCCCTTGAC 60.890 63.158 5.39 0.00 0.00 3.18
680 908 1.592669 CATAGCGGCTCCCTTGACG 60.593 63.158 5.39 0.00 42.16 4.35
681 909 2.058595 ATAGCGGCTCCCTTGACGT 61.059 57.895 5.39 0.00 41.16 4.34
682 910 0.754217 ATAGCGGCTCCCTTGACGTA 60.754 55.000 5.39 0.00 41.16 3.57
683 911 1.660560 TAGCGGCTCCCTTGACGTAC 61.661 60.000 5.39 0.00 41.16 3.67
684 912 2.202570 CGGCTCCCTTGACGTACG 60.203 66.667 15.01 15.01 33.11 3.67
685 913 2.183555 GGCTCCCTTGACGTACGG 59.816 66.667 21.06 0.79 0.00 4.02
686 914 2.508663 GCTCCCTTGACGTACGGC 60.509 66.667 21.06 18.72 0.00 5.68
687 915 3.003113 GCTCCCTTGACGTACGGCT 62.003 63.158 23.82 0.00 0.00 5.52
688 916 1.139095 CTCCCTTGACGTACGGCTC 59.861 63.158 23.82 10.86 0.00 4.70
689 917 2.183555 CCCTTGACGTACGGCTCC 59.816 66.667 23.82 7.43 0.00 4.70
690 918 2.348888 CCCTTGACGTACGGCTCCT 61.349 63.158 23.82 0.00 0.00 3.69
691 919 1.153823 CCTTGACGTACGGCTCCTG 60.154 63.158 23.82 9.25 0.00 3.86
692 920 1.805945 CTTGACGTACGGCTCCTGC 60.806 63.158 23.82 1.54 38.76 4.85
709 937 2.819595 CCGTTGTGGCGCTGCTAT 60.820 61.111 7.64 0.00 0.00 2.97
710 938 2.400798 CGTTGTGGCGCTGCTATG 59.599 61.111 7.64 0.00 0.00 2.23
711 939 2.390599 CGTTGTGGCGCTGCTATGT 61.391 57.895 7.64 0.00 0.00 2.29
712 940 1.135315 GTTGTGGCGCTGCTATGTG 59.865 57.895 7.64 0.00 0.00 3.21
713 941 2.039974 TTGTGGCGCTGCTATGTGG 61.040 57.895 7.64 0.00 0.00 4.17
714 942 3.204827 GTGGCGCTGCTATGTGGG 61.205 66.667 7.64 0.00 0.00 4.61
717 945 4.864334 GCGCTGCTATGTGGGCCT 62.864 66.667 4.53 0.00 36.35 5.19
718 946 2.898840 CGCTGCTATGTGGGCCTG 60.899 66.667 4.53 0.00 0.00 4.85
719 947 2.273449 GCTGCTATGTGGGCCTGT 59.727 61.111 4.53 0.00 0.00 4.00
720 948 1.379044 GCTGCTATGTGGGCCTGTT 60.379 57.895 4.53 0.00 0.00 3.16
721 949 0.967380 GCTGCTATGTGGGCCTGTTT 60.967 55.000 4.53 0.00 0.00 2.83
722 950 1.098050 CTGCTATGTGGGCCTGTTTC 58.902 55.000 4.53 0.00 0.00 2.78
723 951 0.323360 TGCTATGTGGGCCTGTTTCC 60.323 55.000 4.53 0.00 0.00 3.13
724 952 1.037579 GCTATGTGGGCCTGTTTCCC 61.038 60.000 4.53 0.00 44.17 3.97
731 959 0.824109 GGGCCTGTTTCCCAATAAGC 59.176 55.000 0.84 0.00 43.37 3.09
732 960 0.824109 GGCCTGTTTCCCAATAAGCC 59.176 55.000 0.00 0.00 0.00 4.35
733 961 0.824109 GCCTGTTTCCCAATAAGCCC 59.176 55.000 0.00 0.00 0.00 5.19
734 962 1.894978 GCCTGTTTCCCAATAAGCCCA 60.895 52.381 0.00 0.00 0.00 5.36
735 963 1.824852 CCTGTTTCCCAATAAGCCCAC 59.175 52.381 0.00 0.00 0.00 4.61
736 964 1.824852 CTGTTTCCCAATAAGCCCACC 59.175 52.381 0.00 0.00 0.00 4.61
737 965 1.431243 TGTTTCCCAATAAGCCCACCT 59.569 47.619 0.00 0.00 0.00 4.00
738 966 1.824852 GTTTCCCAATAAGCCCACCTG 59.175 52.381 0.00 0.00 0.00 4.00
739 967 1.080638 TTCCCAATAAGCCCACCTGT 58.919 50.000 0.00 0.00 0.00 4.00
740 968 1.080638 TCCCAATAAGCCCACCTGTT 58.919 50.000 0.00 0.00 0.00 3.16
741 969 2.280103 TCCCAATAAGCCCACCTGTTA 58.720 47.619 0.00 0.00 0.00 2.41
742 970 2.241176 TCCCAATAAGCCCACCTGTTAG 59.759 50.000 0.00 0.00 0.00 2.34
743 971 2.025321 CCCAATAAGCCCACCTGTTAGT 60.025 50.000 0.00 0.00 0.00 2.24
744 972 3.016736 CCAATAAGCCCACCTGTTAGTG 58.983 50.000 0.00 0.00 37.51 2.74
751 979 3.509388 CACCTGTTAGTGGTCGGAC 57.491 57.895 0.00 0.00 35.28 4.79
752 980 0.388134 CACCTGTTAGTGGTCGGACG 60.388 60.000 1.43 0.00 35.28 4.79
753 981 1.214589 CCTGTTAGTGGTCGGACGG 59.785 63.158 1.43 0.00 0.00 4.79
754 982 1.445582 CTGTTAGTGGTCGGACGGC 60.446 63.158 1.43 0.00 0.00 5.68
755 983 2.149803 CTGTTAGTGGTCGGACGGCA 62.150 60.000 1.43 0.00 0.00 5.69
756 984 1.735559 GTTAGTGGTCGGACGGCAC 60.736 63.158 8.84 8.84 0.00 5.01
757 985 2.934570 TTAGTGGTCGGACGGCACC 61.935 63.158 12.12 0.00 0.00 5.01
778 1006 2.107141 CCGAACGGCAGAGGATCC 59.893 66.667 2.48 2.48 33.66 3.36
779 1007 2.427245 CCGAACGGCAGAGGATCCT 61.427 63.158 16.13 16.13 33.66 3.24
780 1008 1.066587 CGAACGGCAGAGGATCCTC 59.933 63.158 31.27 31.27 43.03 3.71
781 1009 1.066587 GAACGGCAGAGGATCCTCG 59.933 63.158 31.51 26.20 46.90 4.63
782 1010 1.668101 GAACGGCAGAGGATCCTCGT 61.668 60.000 31.51 24.57 46.90 4.18
783 1011 1.668101 AACGGCAGAGGATCCTCGTC 61.668 60.000 31.51 25.76 46.90 4.20
784 1012 2.851071 CGGCAGAGGATCCTCGTCC 61.851 68.421 31.51 30.77 46.90 4.79
907 1143 2.083774 CGCATAAGCAAACCAGAGGAA 58.916 47.619 0.00 0.00 42.27 3.36
922 1164 9.599866 AAACCAGAGGAAAATAAAAACAAGAAG 57.400 29.630 0.00 0.00 0.00 2.85
930 1172 9.489393 GGAAAATAAAAACAAGAAGCAAAACAG 57.511 29.630 0.00 0.00 0.00 3.16
1175 1426 1.152839 CTCCTCCTCCTCGTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
1176 1427 1.619975 TCCTCCTCCTCGTCCTCCT 60.620 63.158 0.00 0.00 0.00 3.69
1181 1438 4.816984 TCCTCGTCCTCCTCGGCC 62.817 72.222 0.00 0.00 0.00 6.13
1586 1890 4.641989 TCCAAGATTAATGCTTTCCTCTGC 59.358 41.667 0.00 0.00 0.00 4.26
1625 1929 4.211374 CCCTGACGTTTTCTTCTTGTACTG 59.789 45.833 0.00 0.00 0.00 2.74
1669 1973 3.088194 GTGTTCACCACGTTAGTCTCA 57.912 47.619 0.00 0.00 33.61 3.27
1689 1993 6.431234 GTCTCACTCACATTGGTTATTCCTTT 59.569 38.462 0.00 0.00 37.07 3.11
1713 2017 1.338107 TCTCGCAGGTTCTTGAGGAA 58.662 50.000 0.00 0.00 0.00 3.36
1734 2038 4.722361 ATACCTGAAGAGTTTCGGAGAC 57.278 45.455 0.00 0.00 41.37 3.36
1803 2107 1.591619 GACGACGCCTTGGCTAAATAC 59.408 52.381 10.12 0.00 0.00 1.89
1853 2157 0.588252 TTTTCTGTCGCTGCTTGAGC 59.412 50.000 0.00 0.00 45.20 4.26
1873 2177 4.019858 AGCAAGTATGTAGCTCTCTGTCA 58.980 43.478 0.00 0.00 32.05 3.58
1880 2184 3.763057 TGTAGCTCTCTGTCAGGTTGTA 58.237 45.455 0.00 0.00 0.00 2.41
1886 2190 2.300152 TCTCTGTCAGGTTGTAGCCTTG 59.700 50.000 0.00 0.00 36.58 3.61
1887 2191 2.300152 CTCTGTCAGGTTGTAGCCTTGA 59.700 50.000 0.00 0.00 36.58 3.02
2034 2349 5.474532 ACTGACAGAAGCAAGCAAATCATAA 59.525 36.000 10.08 0.00 0.00 1.90
2042 2357 6.956299 AGCAAGCAAATCATAAACATTGTC 57.044 33.333 0.00 0.00 0.00 3.18
2163 2479 6.936900 TCACTGCTTGAATAAGTAGCTCTTTT 59.063 34.615 0.00 0.00 46.69 2.27
2180 2504 5.810074 GCTCTTTTGGTTGTAGCTTTTGAAA 59.190 36.000 0.00 0.00 0.00 2.69
2286 2610 0.107066 ATCCAGGTGAATGCGATGCA 60.107 50.000 0.00 0.00 44.86 3.96
2364 2689 4.829064 TGTTATGGACTCAACACTTTGC 57.171 40.909 0.00 0.00 32.17 3.68
2386 2711 7.744087 TGCCTGACATTCATAACCATTATAC 57.256 36.000 0.00 0.00 0.00 1.47
2391 2716 9.784531 CTGACATTCATAACCATTATACTTCCT 57.215 33.333 0.00 0.00 0.00 3.36
2418 2743 6.434596 TGTCCAAATTTGTTGTCTTATGACG 58.565 36.000 16.73 0.00 45.70 4.35
2420 2745 6.359617 GTCCAAATTTGTTGTCTTATGACGTG 59.640 38.462 16.73 0.00 45.70 4.49
2432 2757 2.961526 ATGACGTGATAGTGTCCCAC 57.038 50.000 0.00 0.00 34.18 4.61
2436 2761 1.968493 ACGTGATAGTGTCCCACTTGT 59.032 47.619 1.74 0.00 42.59 3.16
2443 2768 2.365582 AGTGTCCCACTTGTTGTTCAC 58.634 47.619 0.00 0.00 42.59 3.18
2449 2774 2.692557 CCCACTTGTTGTTCACATGGAA 59.307 45.455 0.00 0.00 35.30 3.53
2475 2800 1.079127 CCGGTTCAGTGGTAGCTGG 60.079 63.158 0.00 0.00 37.12 4.85
2478 2803 1.270625 CGGTTCAGTGGTAGCTGGAAA 60.271 52.381 0.00 0.00 37.12 3.13
2481 2806 3.191371 GGTTCAGTGGTAGCTGGAAATTG 59.809 47.826 0.00 0.00 37.12 2.32
2482 2807 3.071874 TCAGTGGTAGCTGGAAATTGG 57.928 47.619 0.00 0.00 37.12 3.16
2485 2810 2.912956 AGTGGTAGCTGGAAATTGGAGA 59.087 45.455 0.00 0.00 0.00 3.71
2486 2811 3.525199 AGTGGTAGCTGGAAATTGGAGAT 59.475 43.478 0.00 0.00 0.00 2.75
2487 2812 4.721776 AGTGGTAGCTGGAAATTGGAGATA 59.278 41.667 0.00 0.00 0.00 1.98
2488 2813 5.191722 AGTGGTAGCTGGAAATTGGAGATAA 59.808 40.000 0.00 0.00 0.00 1.75
2489 2814 6.064717 GTGGTAGCTGGAAATTGGAGATAAT 58.935 40.000 0.00 0.00 0.00 1.28
2490 2815 7.072454 AGTGGTAGCTGGAAATTGGAGATAATA 59.928 37.037 0.00 0.00 0.00 0.98
2531 2856 9.796180 TTTCTTGCTAGTTGGGTTATTTACTTA 57.204 29.630 0.00 0.00 0.00 2.24
2543 2868 9.073475 TGGGTTATTTACTTATGCACATATTCC 57.927 33.333 0.00 0.00 0.00 3.01
2551 2876 9.984190 TTACTTATGCACATATTCCGTGTATTA 57.016 29.630 0.00 0.00 39.83 0.98
2611 2937 2.289506 GGGTTGGTCAAGTCTGTCCTAC 60.290 54.545 0.00 0.00 36.36 3.18
2622 2948 5.678955 AGTCTGTCCTACAAAAGGGATAC 57.321 43.478 0.00 0.00 46.55 2.24
2674 3000 5.545658 AATGAATTGTGTGTGTCCGATAC 57.454 39.130 0.00 0.00 0.00 2.24
2694 3020 7.173907 CCGATACAGCATTATCTCTTCCAAATT 59.826 37.037 3.81 0.00 0.00 1.82
2716 3043 9.981460 AAATTTATAGTCAAATCTCACCCTTCT 57.019 29.630 0.00 0.00 0.00 2.85
2731 3058 2.158460 CCCTTCTGGTTGGTCTTTCCTT 60.158 50.000 0.00 0.00 37.07 3.36
2771 3098 2.627699 GGGGCTCATGTTCTCAACAAAA 59.372 45.455 0.00 0.00 45.86 2.44
2784 3111 9.515020 TGTTCTCAACAAAATTACTTGTCATTC 57.485 29.630 0.00 0.00 38.59 2.67
2794 3121 3.498774 ACTTGTCATTCTGGCTCTGTT 57.501 42.857 0.00 0.00 0.00 3.16
2842 3169 5.469373 TGTGCTTCGATTATTGACATGAC 57.531 39.130 0.00 0.00 0.00 3.06
3147 3503 5.906113 TTGCCTTCCGATTATTTTTGCTA 57.094 34.783 0.00 0.00 0.00 3.49
3166 3522 0.104777 ATAGGATCCTGCAGAGGCCA 60.105 55.000 25.28 0.36 39.57 5.36
3171 3527 0.112995 ATCCTGCAGAGGCCAACAAA 59.887 50.000 17.39 0.00 39.57 2.83
3255 3611 4.922206 TGTGAACCTAATTGCATTCCTCT 58.078 39.130 0.00 0.00 0.00 3.69
3367 3736 7.275183 AGACTGCATTATGTGTATCAGCTTTA 58.725 34.615 0.00 0.00 0.00 1.85
3381 3750 8.043113 TGTATCAGCTTTATGTTCAGTTCAGAT 58.957 33.333 0.00 0.00 0.00 2.90
3594 4357 0.666913 GCGAACGACTGGATAGCCTA 59.333 55.000 0.00 0.00 34.31 3.93
3640 4403 0.811616 CGCTTCACAGGTAGGGATGC 60.812 60.000 0.00 0.00 44.88 3.91
3642 4405 2.014068 GCTTCACAGGTAGGGATGCAC 61.014 57.143 0.00 0.00 46.88 4.57
3682 4448 6.163476 GGTCATCGTGGTATGCTAATTGATA 58.837 40.000 0.00 0.00 0.00 2.15
3692 4458 7.052873 GGTATGCTAATTGATAGATCCATGCT 58.947 38.462 0.00 0.00 33.04 3.79
3694 4460 9.775854 GTATGCTAATTGATAGATCCATGCTAT 57.224 33.333 0.00 0.00 33.04 2.97
3695 4461 8.678593 ATGCTAATTGATAGATCCATGCTATG 57.321 34.615 0.00 0.00 33.04 2.23
3696 4462 7.052248 TGCTAATTGATAGATCCATGCTATGG 58.948 38.462 8.41 8.41 41.93 2.74
3710 4476 4.286297 TGCTATGGATAGTGGTTATGGC 57.714 45.455 0.00 0.00 32.96 4.40
3711 4477 3.650461 TGCTATGGATAGTGGTTATGGCA 59.350 43.478 0.00 0.00 32.96 4.92
3712 4478 4.103943 TGCTATGGATAGTGGTTATGGCAA 59.896 41.667 0.00 0.00 32.96 4.52
3713 4479 4.697352 GCTATGGATAGTGGTTATGGCAAG 59.303 45.833 0.00 0.00 32.96 4.01
3714 4480 4.796110 ATGGATAGTGGTTATGGCAAGT 57.204 40.909 0.00 0.00 0.00 3.16
3715 4481 3.884895 TGGATAGTGGTTATGGCAAGTG 58.115 45.455 0.00 0.00 0.00 3.16
3716 4482 3.214328 GGATAGTGGTTATGGCAAGTGG 58.786 50.000 0.00 0.00 0.00 4.00
3717 4483 3.118038 GGATAGTGGTTATGGCAAGTGGA 60.118 47.826 0.00 0.00 0.00 4.02
3718 4484 2.200373 AGTGGTTATGGCAAGTGGAC 57.800 50.000 0.00 0.00 0.00 4.02
3719 4485 1.173913 GTGGTTATGGCAAGTGGACC 58.826 55.000 0.00 0.00 0.00 4.46
3720 4486 1.072266 TGGTTATGGCAAGTGGACCT 58.928 50.000 0.00 0.00 0.00 3.85
3726 4492 0.840617 TGGCAAGTGGACCTGTAACA 59.159 50.000 0.00 0.00 0.00 2.41
3730 4496 4.263727 TGGCAAGTGGACCTGTAACATTAT 60.264 41.667 0.00 0.00 0.00 1.28
3736 4502 2.583143 GACCTGTAACATTATGCCCCC 58.417 52.381 0.00 0.00 0.00 5.40
3737 4503 2.174854 GACCTGTAACATTATGCCCCCT 59.825 50.000 0.00 0.00 0.00 4.79
3738 4504 2.585432 ACCTGTAACATTATGCCCCCTT 59.415 45.455 0.00 0.00 0.00 3.95
3740 4506 4.030216 CCTGTAACATTATGCCCCCTTTT 58.970 43.478 0.00 0.00 0.00 2.27
3741 4507 5.205056 CCTGTAACATTATGCCCCCTTTTA 58.795 41.667 0.00 0.00 0.00 1.52
3742 4508 5.301805 CCTGTAACATTATGCCCCCTTTTAG 59.698 44.000 0.00 0.00 0.00 1.85
3743 4509 4.647399 TGTAACATTATGCCCCCTTTTAGC 59.353 41.667 0.00 0.00 0.00 3.09
3744 4510 3.688049 ACATTATGCCCCCTTTTAGCT 57.312 42.857 0.00 0.00 0.00 3.32
3746 4512 5.137412 ACATTATGCCCCCTTTTAGCTAA 57.863 39.130 0.86 0.86 0.00 3.09
3747 4513 5.715921 ACATTATGCCCCCTTTTAGCTAAT 58.284 37.500 7.08 0.00 0.00 1.73
3748 4514 5.539955 ACATTATGCCCCCTTTTAGCTAATG 59.460 40.000 7.08 3.66 35.75 1.90
3749 4515 1.775385 TGCCCCCTTTTAGCTAATGC 58.225 50.000 7.08 4.65 40.05 3.56
3762 4528 3.411415 GCTAATGCTGTGCCTTTGTAG 57.589 47.619 0.00 0.00 36.03 2.74
3763 4529 2.749621 GCTAATGCTGTGCCTTTGTAGT 59.250 45.455 0.00 0.00 36.03 2.73
3766 4532 2.566833 TGCTGTGCCTTTGTAGTCAT 57.433 45.000 0.00 0.00 0.00 3.06
3767 4533 2.153645 TGCTGTGCCTTTGTAGTCATG 58.846 47.619 0.00 0.00 0.00 3.07
3770 4536 3.610114 GCTGTGCCTTTGTAGTCATGTTG 60.610 47.826 0.00 0.00 0.00 3.33
3771 4537 3.550820 TGTGCCTTTGTAGTCATGTTGT 58.449 40.909 0.00 0.00 0.00 3.32
3783 4631 4.613944 AGTCATGTTGTTGCTGATTGTTG 58.386 39.130 0.00 0.00 0.00 3.33
3787 4635 0.392336 TTGTTGCTGATTGTTGCCCC 59.608 50.000 0.00 0.00 0.00 5.80
3791 4639 0.469705 TGCTGATTGTTGCCCCTTGT 60.470 50.000 0.00 0.00 0.00 3.16
3867 4727 9.422864 ACAATCCTGTAATAACCAAGCGGTAGT 62.423 40.741 0.00 0.00 38.28 2.73
3976 4839 0.655733 CACCACGTCAGTGTCCAAAC 59.344 55.000 7.02 0.00 46.56 2.93
4080 4943 0.166814 GCGTTCAAGCTACTTGCCAG 59.833 55.000 2.41 0.00 44.23 4.85
4149 5012 4.023450 CGTCTATAACTGAACGGATGGCTA 60.023 45.833 0.00 0.00 0.00 3.93
4161 5024 2.951642 CGGATGGCTAACACATTTCCAT 59.048 45.455 0.00 0.00 39.99 3.41
4243 5106 5.334957 GCACTAGGCAGATGAAATGATGATG 60.335 44.000 0.00 0.00 43.97 3.07
4244 5107 5.995897 CACTAGGCAGATGAAATGATGATGA 59.004 40.000 0.00 0.00 0.00 2.92
4245 5108 6.655425 CACTAGGCAGATGAAATGATGATGAT 59.345 38.462 0.00 0.00 0.00 2.45
4287 5150 4.750098 ACAGTCATTCAAAAGACAGGTACG 59.250 41.667 1.51 0.00 37.23 3.67
4289 5152 5.465390 CAGTCATTCAAAAGACAGGTACGAA 59.535 40.000 0.00 0.00 37.23 3.85
4360 5238 0.397941 CTCCAGGAGGACAGCAACAA 59.602 55.000 8.88 0.00 39.61 2.83
4390 5268 1.743321 GAGAGGACGGCCATCAGGAG 61.743 65.000 11.69 0.00 36.89 3.69
4456 5334 2.250939 CCACCTGCACGAAAAGCGA 61.251 57.895 0.00 0.00 44.57 4.93
4458 5336 2.170985 CCTGCACGAAAAGCGACG 59.829 61.111 0.00 0.00 44.57 5.12
4459 5337 2.170985 CTGCACGAAAAGCGACGG 59.829 61.111 0.00 0.00 44.57 4.79
4464 5342 1.066918 ACGAAAAGCGACGGTGAGT 59.933 52.632 0.00 0.00 44.57 3.41
4465 5343 1.213094 ACGAAAAGCGACGGTGAGTG 61.213 55.000 0.00 0.00 44.57 3.51
4466 5344 1.204312 GAAAAGCGACGGTGAGTGC 59.796 57.895 0.00 0.00 0.00 4.40
4467 5345 2.171489 GAAAAGCGACGGTGAGTGCC 62.171 60.000 0.00 0.00 0.00 5.01
4468 5346 2.660258 AAAAGCGACGGTGAGTGCCT 62.660 55.000 0.00 0.00 0.00 4.75
4498 5376 2.230892 GACAAATGTCACGTCGCCA 58.769 52.632 8.63 0.00 44.18 5.69
4499 5377 0.796312 GACAAATGTCACGTCGCCAT 59.204 50.000 8.63 0.00 44.18 4.40
4500 5378 0.796312 ACAAATGTCACGTCGCCATC 59.204 50.000 0.00 0.00 0.00 3.51
4501 5379 0.795698 CAAATGTCACGTCGCCATCA 59.204 50.000 0.00 0.00 0.00 3.07
4502 5380 0.796312 AAATGTCACGTCGCCATCAC 59.204 50.000 0.00 0.00 0.00 3.06
4504 5382 3.179265 GTCACGTCGCCATCACGG 61.179 66.667 0.00 0.00 41.73 4.94
4510 5388 1.289109 CGTCGCCATCACGGAAAAGT 61.289 55.000 0.00 0.00 36.56 2.66
4514 5392 0.313672 GCCATCACGGAAAAGTGCAA 59.686 50.000 0.00 0.00 41.61 4.08
4693 5578 2.463589 TTTTCGGCAGTGCTCCGGAT 62.464 55.000 16.11 0.00 46.43 4.18
4791 5676 4.728102 CCGCGTGTAGACCGGCAA 62.728 66.667 4.92 0.00 35.14 4.52
4902 5787 2.280797 CTGACGGTGGTGGTGGTG 60.281 66.667 0.00 0.00 0.00 4.17
4903 5788 4.555709 TGACGGTGGTGGTGGTGC 62.556 66.667 0.00 0.00 0.00 5.01
4957 5842 4.753662 TAGCCTCCGCGTCCAGGT 62.754 66.667 15.23 5.47 41.18 4.00
4985 5870 2.174349 GTTGCCGCTGCGAGAAAG 59.826 61.111 25.45 7.29 41.78 2.62
4988 5873 1.568612 TTGCCGCTGCGAGAAAGAAG 61.569 55.000 25.45 4.87 41.78 2.85
4989 5874 2.029844 GCCGCTGCGAGAAAGAAGT 61.030 57.895 25.45 0.00 0.00 3.01
4990 5875 1.569479 GCCGCTGCGAGAAAGAAGTT 61.569 55.000 25.45 0.00 0.00 2.66
4991 5876 1.710013 CCGCTGCGAGAAAGAAGTTA 58.290 50.000 25.45 0.00 0.00 2.24
4993 5878 3.444916 CCGCTGCGAGAAAGAAGTTATA 58.555 45.455 25.45 0.00 0.00 0.98
4994 5879 3.487574 CCGCTGCGAGAAAGAAGTTATAG 59.512 47.826 25.45 0.00 0.00 1.31
4995 5880 3.487574 CGCTGCGAGAAAGAAGTTATAGG 59.512 47.826 18.66 0.00 0.00 2.57
4996 5881 4.683832 GCTGCGAGAAAGAAGTTATAGGA 58.316 43.478 0.00 0.00 0.00 2.94
4998 5883 4.683832 TGCGAGAAAGAAGTTATAGGAGC 58.316 43.478 0.00 0.00 0.00 4.70
4999 5884 4.159693 TGCGAGAAAGAAGTTATAGGAGCA 59.840 41.667 0.00 0.00 0.00 4.26
5001 5886 4.742659 CGAGAAAGAAGTTATAGGAGCAGC 59.257 45.833 0.00 0.00 0.00 5.25
5002 5887 5.665459 GAGAAAGAAGTTATAGGAGCAGCA 58.335 41.667 0.00 0.00 0.00 4.41
5003 5888 5.669477 AGAAAGAAGTTATAGGAGCAGCAG 58.331 41.667 0.00 0.00 0.00 4.24
5004 5889 3.467374 AGAAGTTATAGGAGCAGCAGC 57.533 47.619 0.00 0.00 42.56 5.25
5026 5911 1.610038 CAGTCAGCCATTGTTGCTTCA 59.390 47.619 0.00 0.00 36.81 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.352651 GCCTTTGATACCAAACCCCATTATTT 60.353 38.462 0.00 0.00 37.36 1.40
1 2 5.130311 GCCTTTGATACCAAACCCCATTATT 59.870 40.000 0.00 0.00 37.36 1.40
2 3 4.653801 GCCTTTGATACCAAACCCCATTAT 59.346 41.667 0.00 0.00 37.36 1.28
3 4 4.027437 GCCTTTGATACCAAACCCCATTA 58.973 43.478 0.00 0.00 37.36 1.90
14 15 4.202151 GGGTGATTCATTGCCTTTGATACC 60.202 45.833 0.00 0.00 0.00 2.73
19 20 3.196039 TGATGGGTGATTCATTGCCTTTG 59.804 43.478 0.00 0.00 0.00 2.77
24 25 2.159198 GGTGTGATGGGTGATTCATTGC 60.159 50.000 0.00 0.00 0.00 3.56
30 31 2.905415 ATGTGGTGTGATGGGTGATT 57.095 45.000 0.00 0.00 0.00 2.57
39 40 8.226819 TCTAATGTTTTGTTTATGTGGTGTGA 57.773 30.769 0.00 0.00 0.00 3.58
70 71 5.595952 GGAGCATCAAGATATCCCTTTGTTT 59.404 40.000 0.00 0.00 36.25 2.83
117 118 7.611855 ACATCATATGTACCAGATGTCGAGATA 59.388 37.037 1.90 0.00 45.68 1.98
123 124 9.710900 TTATTCACATCATATGTACCAGATGTC 57.289 33.333 13.34 0.00 45.68 3.06
131 132 8.783833 AGAGCCATTATTCACATCATATGTAC 57.216 34.615 1.90 0.00 42.70 2.90
154 155 6.237901 TCTTCTGGCTGTTAATTAGCAAAGA 58.762 36.000 14.25 14.60 42.88 2.52
155 156 6.150140 ACTCTTCTGGCTGTTAATTAGCAAAG 59.850 38.462 14.25 13.17 42.88 2.77
170 171 1.799548 GCGCTGTAGTACTCTTCTGGC 60.800 57.143 0.00 0.00 0.00 4.85
173 174 3.775202 CAATGCGCTGTAGTACTCTTCT 58.225 45.455 9.73 0.00 0.00 2.85
176 177 1.204704 TGCAATGCGCTGTAGTACTCT 59.795 47.619 9.73 0.00 43.06 3.24
177 178 1.640428 TGCAATGCGCTGTAGTACTC 58.360 50.000 9.73 0.00 43.06 2.59
179 180 1.933181 TCATGCAATGCGCTGTAGTAC 59.067 47.619 9.73 0.00 46.21 2.73
181 182 1.671979 ATCATGCAATGCGCTGTAGT 58.328 45.000 9.73 0.00 46.21 2.73
183 184 1.872952 GGTATCATGCAATGCGCTGTA 59.127 47.619 9.73 0.00 46.21 2.74
185 186 0.039798 GGGTATCATGCAATGCGCTG 60.040 55.000 9.73 0.00 46.21 5.18
186 187 0.179009 AGGGTATCATGCAATGCGCT 60.179 50.000 9.73 0.00 46.21 5.92
187 188 1.522668 TAGGGTATCATGCAATGCGC 58.477 50.000 0.00 0.00 46.21 6.09
188 189 3.373130 CAGATAGGGTATCATGCAATGCG 59.627 47.826 0.00 0.00 46.21 4.73
231 239 7.610305 TCTCCCGTCTTATTTTTCAAGCTTTAT 59.390 33.333 0.00 0.00 0.00 1.40
268 276 0.708802 AGTCTCCCGTCTTCCCCTAA 59.291 55.000 0.00 0.00 0.00 2.69
269 277 0.258194 GAGTCTCCCGTCTTCCCCTA 59.742 60.000 0.00 0.00 0.00 3.53
270 278 1.000612 GAGTCTCCCGTCTTCCCCT 59.999 63.158 0.00 0.00 0.00 4.79
272 280 1.000612 AGGAGTCTCCCGTCTTCCC 59.999 63.158 15.72 0.00 37.19 3.97
274 282 1.099689 CTCAGGAGTCTCCCGTCTTC 58.900 60.000 15.72 0.00 37.19 2.87
275 283 0.699399 TCTCAGGAGTCTCCCGTCTT 59.301 55.000 15.72 0.00 37.19 3.01
279 287 0.754957 AGCATCTCAGGAGTCTCCCG 60.755 60.000 15.72 5.42 37.19 5.14
316 324 9.298250 TCGCTCAGTTATATAGAGGAAGTTATT 57.702 33.333 0.00 0.00 0.00 1.40
317 325 8.732531 GTCGCTCAGTTATATAGAGGAAGTTAT 58.267 37.037 0.00 0.00 0.00 1.89
319 327 6.293516 CGTCGCTCAGTTATATAGAGGAAGTT 60.294 42.308 0.00 0.00 0.00 2.66
320 328 5.179742 CGTCGCTCAGTTATATAGAGGAAGT 59.820 44.000 0.00 0.00 0.00 3.01
329 337 4.817464 AGAGACTTCGTCGCTCAGTTATAT 59.183 41.667 0.00 0.00 38.21 0.86
331 339 3.011119 AGAGACTTCGTCGCTCAGTTAT 58.989 45.455 0.00 0.00 38.21 1.89
333 341 1.240256 AGAGACTTCGTCGCTCAGTT 58.760 50.000 0.00 0.00 38.21 3.16
334 342 2.935505 AGAGACTTCGTCGCTCAGT 58.064 52.632 0.00 0.00 38.21 3.41
339 347 1.326548 GAGAGAGAGAGACTTCGTCGC 59.673 57.143 0.00 0.00 37.67 5.19
341 349 4.113354 GAGAGAGAGAGAGAGACTTCGTC 58.887 52.174 0.00 0.00 0.00 4.20
342 350 3.769844 AGAGAGAGAGAGAGAGACTTCGT 59.230 47.826 0.00 0.00 0.00 3.85
343 351 4.098654 AGAGAGAGAGAGAGAGAGACTTCG 59.901 50.000 0.00 0.00 0.00 3.79
344 352 5.127845 TGAGAGAGAGAGAGAGAGAGACTTC 59.872 48.000 0.00 0.00 0.00 3.01
346 354 4.614475 TGAGAGAGAGAGAGAGAGAGACT 58.386 47.826 0.00 0.00 0.00 3.24
348 356 4.162320 GGTTGAGAGAGAGAGAGAGAGAGA 59.838 50.000 0.00 0.00 0.00 3.10
349 357 4.446371 GGTTGAGAGAGAGAGAGAGAGAG 58.554 52.174 0.00 0.00 0.00 3.20
350 358 3.199946 GGGTTGAGAGAGAGAGAGAGAGA 59.800 52.174 0.00 0.00 0.00 3.10
351 359 3.545703 GGGTTGAGAGAGAGAGAGAGAG 58.454 54.545 0.00 0.00 0.00 3.20
352 360 2.093181 CGGGTTGAGAGAGAGAGAGAGA 60.093 54.545 0.00 0.00 0.00 3.10
354 362 1.631388 ACGGGTTGAGAGAGAGAGAGA 59.369 52.381 0.00 0.00 0.00 3.10
355 363 2.122783 ACGGGTTGAGAGAGAGAGAG 57.877 55.000 0.00 0.00 0.00 3.20
356 364 3.935818 ATACGGGTTGAGAGAGAGAGA 57.064 47.619 0.00 0.00 0.00 3.10
357 365 5.591067 ACTTTATACGGGTTGAGAGAGAGAG 59.409 44.000 0.00 0.00 0.00 3.20
359 367 5.838531 ACTTTATACGGGTTGAGAGAGAG 57.161 43.478 0.00 0.00 0.00 3.20
361 369 7.098074 AGTAACTTTATACGGGTTGAGAGAG 57.902 40.000 0.00 0.00 0.00 3.20
363 371 9.080915 GTTAAGTAACTTTATACGGGTTGAGAG 57.919 37.037 0.00 0.00 33.52 3.20
364 372 8.806146 AGTTAAGTAACTTTATACGGGTTGAGA 58.194 33.333 0.00 0.00 43.57 3.27
366 374 8.584157 TCAGTTAAGTAACTTTATACGGGTTGA 58.416 33.333 0.85 0.00 43.57 3.18
367 375 8.761575 TCAGTTAAGTAACTTTATACGGGTTG 57.238 34.615 0.85 0.00 43.57 3.77
403 495 8.659925 AAAAATCAATCAAAACATGTAGCACA 57.340 26.923 0.00 0.00 0.00 4.57
430 522 4.560819 GTGTTGTGCAATGAAACGAAAGAA 59.439 37.500 0.00 0.00 0.00 2.52
434 526 2.159503 ACGTGTTGTGCAATGAAACGAA 60.160 40.909 13.03 0.00 33.96 3.85
435 527 1.398739 ACGTGTTGTGCAATGAAACGA 59.601 42.857 13.03 0.00 33.96 3.85
436 528 1.821336 ACGTGTTGTGCAATGAAACG 58.179 45.000 6.44 6.44 35.78 3.60
438 530 3.494045 TGAACGTGTTGTGCAATGAAA 57.506 38.095 0.00 0.00 31.23 2.69
439 531 3.706802 ATGAACGTGTTGTGCAATGAA 57.293 38.095 0.00 0.00 40.39 2.57
440 532 3.706802 AATGAACGTGTTGTGCAATGA 57.293 38.095 0.00 0.00 40.39 2.57
442 534 3.779759 ACAAATGAACGTGTTGTGCAAT 58.220 36.364 6.43 0.00 40.39 3.56
443 535 3.175152 GACAAATGAACGTGTTGTGCAA 58.825 40.909 10.72 0.00 40.39 4.08
446 538 3.785521 CACTGACAAATGAACGTGTTGTG 59.214 43.478 10.72 4.04 35.67 3.33
448 540 3.362295 CCACTGACAAATGAACGTGTTG 58.638 45.455 0.00 0.00 0.00 3.33
451 543 1.334960 GCCCACTGACAAATGAACGTG 60.335 52.381 0.00 0.00 0.00 4.49
453 545 0.950836 TGCCCACTGACAAATGAACG 59.049 50.000 0.00 0.00 0.00 3.95
454 546 2.297033 ACATGCCCACTGACAAATGAAC 59.703 45.455 0.00 0.00 0.00 3.18
455 547 2.557924 GACATGCCCACTGACAAATGAA 59.442 45.455 0.00 0.00 0.00 2.57
457 549 1.135603 CGACATGCCCACTGACAAATG 60.136 52.381 0.00 0.00 0.00 2.32
458 550 1.167851 CGACATGCCCACTGACAAAT 58.832 50.000 0.00 0.00 0.00 2.32
459 551 1.514678 GCGACATGCCCACTGACAAA 61.515 55.000 0.00 0.00 37.76 2.83
467 678 2.022240 TATACAGCGCGACATGCCCA 62.022 55.000 12.10 0.00 42.08 5.36
482 693 5.592688 TGGCAGGCAAAAATACTTCCTATAC 59.407 40.000 0.00 0.00 0.00 1.47
493 704 2.236644 TGCACATATGGCAGGCAAAAAT 59.763 40.909 12.98 0.00 36.11 1.82
502 713 1.487300 ATTTGGCTGCACATATGGCA 58.513 45.000 15.29 15.29 39.32 4.92
514 725 4.251543 CCAAACTAACCGAAATTTGGCT 57.748 40.909 0.00 0.00 43.29 4.75
517 728 5.447624 AGGACCAAACTAACCGAAATTTG 57.552 39.130 0.00 0.00 32.89 2.32
529 740 1.205055 GCTAGGGCTAGGACCAAACT 58.795 55.000 0.00 0.00 29.21 2.66
572 789 6.924629 CGAAGCCGGTAGAAGTATTATTAC 57.075 41.667 1.90 0.00 0.00 1.89
590 813 3.782889 ATTCATTACCAAAGCCGAAGC 57.217 42.857 0.00 0.00 40.32 3.86
659 887 3.878667 AAGGGAGCCGCTATGCCC 61.879 66.667 7.44 7.44 41.00 5.36
665 893 2.678934 TACGTCAAGGGAGCCGCT 60.679 61.111 0.00 0.00 0.00 5.52
666 894 2.508663 GTACGTCAAGGGAGCCGC 60.509 66.667 0.00 0.00 0.00 6.53
667 895 2.202570 CGTACGTCAAGGGAGCCG 60.203 66.667 7.22 0.00 0.00 5.52
668 896 2.183555 CCGTACGTCAAGGGAGCC 59.816 66.667 15.21 0.00 0.00 4.70
669 897 2.508663 GCCGTACGTCAAGGGAGC 60.509 66.667 15.21 3.74 0.00 4.70
670 898 1.139095 GAGCCGTACGTCAAGGGAG 59.861 63.158 15.21 0.00 0.00 4.30
671 899 2.345760 GGAGCCGTACGTCAAGGGA 61.346 63.158 15.21 0.00 0.00 4.20
672 900 2.183555 GGAGCCGTACGTCAAGGG 59.816 66.667 15.21 0.00 0.00 3.95
673 901 1.153823 CAGGAGCCGTACGTCAAGG 60.154 63.158 15.21 0.00 0.00 3.61
674 902 1.805945 GCAGGAGCCGTACGTCAAG 60.806 63.158 15.21 0.00 33.58 3.02
675 903 2.260434 GCAGGAGCCGTACGTCAA 59.740 61.111 15.21 0.00 33.58 3.18
692 920 2.819595 ATAGCAGCGCCACAACGG 60.820 61.111 2.29 0.00 38.11 4.44
693 921 2.390599 ACATAGCAGCGCCACAACG 61.391 57.895 2.29 0.00 0.00 4.10
694 922 1.135315 CACATAGCAGCGCCACAAC 59.865 57.895 2.29 0.00 0.00 3.32
695 923 2.039974 CCACATAGCAGCGCCACAA 61.040 57.895 2.29 0.00 0.00 3.33
696 924 2.436469 CCACATAGCAGCGCCACA 60.436 61.111 2.29 0.00 0.00 4.17
697 925 3.204827 CCCACATAGCAGCGCCAC 61.205 66.667 2.29 0.00 0.00 5.01
700 928 4.864334 AGGCCCACATAGCAGCGC 62.864 66.667 0.00 0.00 0.00 5.92
701 929 2.898840 CAGGCCCACATAGCAGCG 60.899 66.667 0.00 0.00 0.00 5.18
702 930 0.967380 AAACAGGCCCACATAGCAGC 60.967 55.000 0.00 0.00 0.00 5.25
703 931 1.098050 GAAACAGGCCCACATAGCAG 58.902 55.000 0.00 0.00 0.00 4.24
704 932 0.323360 GGAAACAGGCCCACATAGCA 60.323 55.000 0.00 0.00 0.00 3.49
705 933 1.037579 GGGAAACAGGCCCACATAGC 61.038 60.000 0.00 0.00 45.31 2.97
706 934 3.191182 GGGAAACAGGCCCACATAG 57.809 57.895 0.00 0.00 45.31 2.23
712 940 0.824109 GCTTATTGGGAAACAGGCCC 59.176 55.000 0.00 0.00 46.22 5.80
713 941 0.824109 GGCTTATTGGGAAACAGGCC 59.176 55.000 0.00 0.00 0.00 5.19
714 942 0.824109 GGGCTTATTGGGAAACAGGC 59.176 55.000 0.00 0.00 0.00 4.85
715 943 1.824852 GTGGGCTTATTGGGAAACAGG 59.175 52.381 0.00 0.00 0.00 4.00
716 944 1.824852 GGTGGGCTTATTGGGAAACAG 59.175 52.381 0.00 0.00 0.00 3.16
717 945 1.431243 AGGTGGGCTTATTGGGAAACA 59.569 47.619 0.00 0.00 0.00 2.83
718 946 1.824852 CAGGTGGGCTTATTGGGAAAC 59.175 52.381 0.00 0.00 0.00 2.78
719 947 1.431243 ACAGGTGGGCTTATTGGGAAA 59.569 47.619 0.00 0.00 0.00 3.13
720 948 1.080638 ACAGGTGGGCTTATTGGGAA 58.919 50.000 0.00 0.00 0.00 3.97
721 949 1.080638 AACAGGTGGGCTTATTGGGA 58.919 50.000 0.00 0.00 0.00 4.37
722 950 2.025321 ACTAACAGGTGGGCTTATTGGG 60.025 50.000 0.00 0.00 0.00 4.12
723 951 3.016736 CACTAACAGGTGGGCTTATTGG 58.983 50.000 0.00 0.00 33.95 3.16
733 961 0.388134 CGTCCGACCACTAACAGGTG 60.388 60.000 0.00 0.00 40.09 4.00
734 962 1.530013 CCGTCCGACCACTAACAGGT 61.530 60.000 0.00 0.00 43.46 4.00
735 963 1.214589 CCGTCCGACCACTAACAGG 59.785 63.158 0.00 0.00 0.00 4.00
736 964 1.445582 GCCGTCCGACCACTAACAG 60.446 63.158 0.00 0.00 0.00 3.16
737 965 2.201708 TGCCGTCCGACCACTAACA 61.202 57.895 0.00 0.00 0.00 2.41
738 966 1.735559 GTGCCGTCCGACCACTAAC 60.736 63.158 0.00 0.00 0.00 2.34
739 967 2.652530 GTGCCGTCCGACCACTAA 59.347 61.111 0.00 0.00 0.00 2.24
740 968 3.376078 GGTGCCGTCCGACCACTA 61.376 66.667 7.57 0.00 31.97 2.74
761 989 2.107141 GGATCCTCTGCCGTTCGG 59.893 66.667 3.84 6.90 0.00 4.30
762 990 1.066587 GAGGATCCTCTGCCGTTCG 59.933 63.158 31.11 0.00 39.80 3.95
763 991 1.066587 CGAGGATCCTCTGCCGTTC 59.933 63.158 33.70 11.23 40.69 3.95
764 992 1.668101 GACGAGGATCCTCTGCCGTT 61.668 60.000 33.70 15.24 40.69 4.44
765 993 2.043852 ACGAGGATCCTCTGCCGT 60.044 61.111 33.70 25.82 40.69 5.68
766 994 2.725008 GACGAGGATCCTCTGCCG 59.275 66.667 33.70 25.21 40.69 5.69
767 995 2.851071 CGGACGAGGATCCTCTGCC 61.851 68.421 33.70 30.30 40.69 4.85
768 996 2.725008 CGGACGAGGATCCTCTGC 59.275 66.667 33.70 25.29 40.69 4.26
769 997 1.152943 TCCGGACGAGGATCCTCTG 60.153 63.158 33.70 28.14 40.69 3.35
770 998 3.332395 TCCGGACGAGGATCCTCT 58.668 61.111 33.70 22.77 40.69 3.69
784 1012 3.064207 CCACCATACATACCGAAATCCG 58.936 50.000 0.00 0.00 38.18 4.18
848 1083 7.720957 TGATCCATTGTGTTTATTATCCTCCTG 59.279 37.037 0.00 0.00 0.00 3.86
850 1085 7.502226 TGTGATCCATTGTGTTTATTATCCTCC 59.498 37.037 0.00 0.00 0.00 4.30
851 1086 8.345565 GTGTGATCCATTGTGTTTATTATCCTC 58.654 37.037 0.00 0.00 0.00 3.71
852 1087 7.833682 TGTGTGATCCATTGTGTTTATTATCCT 59.166 33.333 0.00 0.00 0.00 3.24
853 1088 7.915397 GTGTGTGATCCATTGTGTTTATTATCC 59.085 37.037 0.00 0.00 0.00 2.59
854 1089 8.458052 TGTGTGTGATCCATTGTGTTTATTATC 58.542 33.333 0.00 0.00 0.00 1.75
855 1090 8.243426 GTGTGTGTGATCCATTGTGTTTATTAT 58.757 33.333 0.00 0.00 0.00 1.28
856 1091 7.572168 CGTGTGTGTGATCCATTGTGTTTATTA 60.572 37.037 0.00 0.00 0.00 0.98
857 1092 6.446318 GTGTGTGTGATCCATTGTGTTTATT 58.554 36.000 0.00 0.00 0.00 1.40
858 1093 5.334802 CGTGTGTGTGATCCATTGTGTTTAT 60.335 40.000 0.00 0.00 0.00 1.40
859 1094 4.024472 CGTGTGTGTGATCCATTGTGTTTA 60.024 41.667 0.00 0.00 0.00 2.01
907 1143 8.882736 CCTCTGTTTTGCTTCTTGTTTTTATTT 58.117 29.630 0.00 0.00 0.00 1.40
922 1164 1.578206 GGCCGTCTCCTCTGTTTTGC 61.578 60.000 0.00 0.00 0.00 3.68
1025 1272 2.649531 AGGGACGACAAATCAAACCA 57.350 45.000 0.00 0.00 0.00 3.67
1086 1333 2.113986 GCGGGATGGGATGGGAAG 59.886 66.667 0.00 0.00 0.00 3.46
1195 1452 4.798344 CCTGCTGCTGCTCCCCAG 62.798 72.222 17.00 5.09 44.67 4.45
1445 1706 2.509336 CCTTGTACTCTGCGGGCG 60.509 66.667 0.00 0.00 0.00 6.13
1446 1707 1.741770 CACCTTGTACTCTGCGGGC 60.742 63.158 0.00 0.00 0.00 6.13
1447 1708 1.741770 GCACCTTGTACTCTGCGGG 60.742 63.158 0.00 0.00 0.00 6.13
1448 1709 0.391661 ATGCACCTTGTACTCTGCGG 60.392 55.000 0.00 0.00 31.96 5.69
1449 1710 1.129251 CAATGCACCTTGTACTCTGCG 59.871 52.381 0.00 0.00 31.96 5.18
1632 1936 5.911280 GTGAACACAACAATCAGATTCACTG 59.089 40.000 6.90 0.00 46.97 3.66
1633 1937 5.009010 GGTGAACACAACAATCAGATTCACT 59.991 40.000 12.42 0.00 42.49 3.41
1669 1973 5.640147 TCCAAAGGAATAACCAATGTGAGT 58.360 37.500 0.00 0.00 42.04 3.41
1689 1993 1.623311 TCAAGAACCTGCGAGAATCCA 59.377 47.619 0.00 0.00 0.00 3.41
1713 2017 4.345854 AGTCTCCGAAACTCTTCAGGTAT 58.654 43.478 0.00 0.00 31.31 2.73
1734 2038 2.549611 CTTCCGCTGTCCTCCACGAG 62.550 65.000 0.00 0.00 0.00 4.18
1803 2107 3.354948 TGATCAAATGAGTGGACCTGG 57.645 47.619 0.00 0.00 0.00 4.45
1853 2157 4.400884 ACCTGACAGAGAGCTACATACTTG 59.599 45.833 3.32 0.00 0.00 3.16
1865 2169 2.300152 CAAGGCTACAACCTGACAGAGA 59.700 50.000 3.32 0.00 39.93 3.10
1873 2177 4.373156 ACATCTTTCAAGGCTACAACCT 57.627 40.909 0.00 0.00 43.91 3.50
1880 2184 4.523943 TGTGCATTTACATCTTTCAAGGCT 59.476 37.500 0.00 0.00 0.00 4.58
2034 2349 3.737172 GGGCGCGCAGACAATGTT 61.737 61.111 34.42 0.00 0.00 2.71
2042 2357 1.159713 TCATAAGAATGGGCGCGCAG 61.160 55.000 34.42 16.29 33.61 5.18
2163 2479 7.221067 CGTTTACATTTTCAAAAGCTACAACCA 59.779 33.333 0.00 0.00 0.00 3.67
2180 2504 4.314961 TGACAGAGATGTGCGTTTACATT 58.685 39.130 4.13 0.00 41.15 2.71
2350 2675 2.288666 TGTCAGGCAAAGTGTTGAGTC 58.711 47.619 0.00 0.00 36.83 3.36
2354 2679 3.713858 TGAATGTCAGGCAAAGTGTTG 57.286 42.857 0.00 0.00 37.83 3.33
2364 2689 9.003658 GGAAGTATAATGGTTATGAATGTCAGG 57.996 37.037 0.00 0.00 0.00 3.86
2386 2711 4.342092 ACAACAAATTTGGACAGGAGGAAG 59.658 41.667 21.74 1.29 0.00 3.46
2391 2716 6.775142 TCATAAGACAACAAATTTGGACAGGA 59.225 34.615 21.74 4.71 0.00 3.86
2443 2768 4.820744 CCGGGGCCAGGTTCCATG 62.821 72.222 15.33 0.00 0.00 3.66
2462 2787 2.642311 TCCAATTTCCAGCTACCACTGA 59.358 45.455 0.00 0.00 40.25 3.41
2502 2827 7.597288 AAATAACCCAACTAGCAAGAAACTT 57.403 32.000 0.00 0.00 0.00 2.66
2531 2856 6.993079 TCTCTAATACACGGAATATGTGCAT 58.007 36.000 0.00 0.00 41.03 3.96
2542 2867 8.195436 TCAGGAAAACTTATCTCTAATACACGG 58.805 37.037 0.00 0.00 0.00 4.94
2543 2868 9.582431 TTCAGGAAAACTTATCTCTAATACACG 57.418 33.333 0.00 0.00 0.00 4.49
2551 2876 7.442656 TCGAAAGTTCAGGAAAACTTATCTCT 58.557 34.615 2.73 0.00 46.17 3.10
2611 2937 6.546484 AGTGGATATGATGGTATCCCTTTTG 58.454 40.000 9.73 0.00 46.33 2.44
2622 2948 8.640063 TCATTAATTGGAAGTGGATATGATGG 57.360 34.615 0.00 0.00 0.00 3.51
2649 2975 7.982354 TGTATCGGACACACACAATTCATTATA 59.018 33.333 0.00 0.00 31.20 0.98
2650 2976 6.821160 TGTATCGGACACACACAATTCATTAT 59.179 34.615 0.00 0.00 31.20 1.28
2651 2977 6.166982 TGTATCGGACACACACAATTCATTA 58.833 36.000 0.00 0.00 31.20 1.90
2652 2978 5.000591 TGTATCGGACACACACAATTCATT 58.999 37.500 0.00 0.00 31.20 2.57
2653 2979 4.574892 TGTATCGGACACACACAATTCAT 58.425 39.130 0.00 0.00 31.20 2.57
2654 2980 3.993736 CTGTATCGGACACACACAATTCA 59.006 43.478 0.00 0.00 33.31 2.57
2655 2981 3.181520 GCTGTATCGGACACACACAATTC 60.182 47.826 0.00 0.00 33.31 2.17
2656 2982 2.742053 GCTGTATCGGACACACACAATT 59.258 45.455 0.00 0.00 33.31 2.32
2657 2983 2.289382 TGCTGTATCGGACACACACAAT 60.289 45.455 0.00 0.00 33.31 2.71
2694 3020 6.889198 CCAGAAGGGTGAGATTTGACTATAA 58.111 40.000 0.00 0.00 0.00 0.98
2716 3043 2.787035 ACCCTAAAGGAAAGACCAACCA 59.213 45.455 0.00 0.00 42.04 3.67
2731 3058 2.578940 CCCCAATGGACAACTACCCTAA 59.421 50.000 0.00 0.00 35.39 2.69
2771 3098 5.171339 ACAGAGCCAGAATGACAAGTAAT 57.829 39.130 0.00 0.00 39.69 1.89
2784 3111 2.768253 TGTATGGACAACAGAGCCAG 57.232 50.000 0.00 0.00 34.74 4.85
2812 3139 6.738649 GTCAATAATCGAAGCACAAACTCTTC 59.261 38.462 0.00 0.00 36.31 2.87
2842 3169 6.724263 TGATTGTACAATTATTAGGCGCAAG 58.276 36.000 21.63 0.00 43.44 4.01
2912 3239 6.056884 AGTTGATTTTGGTTGCATGAACATT 58.943 32.000 0.00 0.00 36.12 2.71
3147 3503 0.104777 TGGCCTCTGCAGGATCCTAT 60.105 55.000 15.67 0.00 43.65 2.57
3166 3522 6.013898 TCTCTCTGGATCTTCATCAGTTTGTT 60.014 38.462 0.00 0.00 0.00 2.83
3171 3527 4.870636 AGTCTCTCTGGATCTTCATCAGT 58.129 43.478 0.00 0.00 0.00 3.41
3361 3730 5.352569 CCGAATCTGAACTGAACATAAAGCT 59.647 40.000 0.00 0.00 0.00 3.74
3367 3736 3.600388 GGACCGAATCTGAACTGAACAT 58.400 45.455 0.00 0.00 0.00 2.71
3507 3880 8.570096 CAAATTATGGATAAACAGATGTGCAG 57.430 34.615 0.00 0.00 0.00 4.41
3594 4357 6.260050 CGCTTAGATCAGAACTCTTCTCTACT 59.740 42.308 0.00 0.00 38.11 2.57
3665 4431 7.201679 GCATGGATCTATCAATTAGCATACCAC 60.202 40.741 0.00 0.00 0.00 4.16
3692 4458 5.456042 CCACTTGCCATAACCACTATCCATA 60.456 44.000 0.00 0.00 0.00 2.74
3694 4460 3.371487 CCACTTGCCATAACCACTATCCA 60.371 47.826 0.00 0.00 0.00 3.41
3695 4461 3.118038 TCCACTTGCCATAACCACTATCC 60.118 47.826 0.00 0.00 0.00 2.59
3696 4462 3.877508 GTCCACTTGCCATAACCACTATC 59.122 47.826 0.00 0.00 0.00 2.08
3698 4464 2.026636 GGTCCACTTGCCATAACCACTA 60.027 50.000 0.00 0.00 0.00 2.74
3699 4465 1.271926 GGTCCACTTGCCATAACCACT 60.272 52.381 0.00 0.00 0.00 4.00
3701 4467 1.072266 AGGTCCACTTGCCATAACCA 58.928 50.000 0.00 0.00 0.00 3.67
3702 4468 1.271926 ACAGGTCCACTTGCCATAACC 60.272 52.381 0.00 0.00 0.00 2.85
3703 4469 2.200373 ACAGGTCCACTTGCCATAAC 57.800 50.000 0.00 0.00 0.00 1.89
3704 4470 3.073209 TGTTACAGGTCCACTTGCCATAA 59.927 43.478 0.00 0.00 0.00 1.90
3707 4473 0.840617 TGTTACAGGTCCACTTGCCA 59.159 50.000 0.00 0.00 0.00 4.92
3708 4474 2.200373 ATGTTACAGGTCCACTTGCC 57.800 50.000 0.00 0.00 0.00 4.52
3709 4475 4.438744 GCATAATGTTACAGGTCCACTTGC 60.439 45.833 0.00 0.00 0.00 4.01
3710 4476 4.096382 GGCATAATGTTACAGGTCCACTTG 59.904 45.833 0.00 0.00 0.00 3.16
3711 4477 4.270008 GGCATAATGTTACAGGTCCACTT 58.730 43.478 0.00 0.00 0.00 3.16
3712 4478 3.371595 GGGCATAATGTTACAGGTCCACT 60.372 47.826 0.00 0.00 0.00 4.00
3713 4479 2.949644 GGGCATAATGTTACAGGTCCAC 59.050 50.000 0.00 0.00 0.00 4.02
3714 4480 2.092103 GGGGCATAATGTTACAGGTCCA 60.092 50.000 0.00 0.00 0.00 4.02
3715 4481 2.583143 GGGGCATAATGTTACAGGTCC 58.417 52.381 0.00 0.00 0.00 4.46
3716 4482 2.174854 AGGGGGCATAATGTTACAGGTC 59.825 50.000 0.00 0.00 0.00 3.85
3717 4483 2.214201 AGGGGGCATAATGTTACAGGT 58.786 47.619 0.00 0.00 0.00 4.00
3718 4484 3.312736 AAGGGGGCATAATGTTACAGG 57.687 47.619 0.00 0.00 0.00 4.00
3719 4485 5.221244 GCTAAAAGGGGGCATAATGTTACAG 60.221 44.000 0.00 0.00 0.00 2.74
3720 4486 4.647399 GCTAAAAGGGGGCATAATGTTACA 59.353 41.667 0.00 0.00 0.00 2.41
3726 4492 4.528206 GCATTAGCTAAAAGGGGGCATAAT 59.472 41.667 10.85 0.00 37.91 1.28
3730 4496 1.775385 GCATTAGCTAAAAGGGGGCA 58.225 50.000 10.85 0.00 37.91 5.36
3740 4506 8.474503 TGACTACAAAGGCACAGCATTAGCTA 62.475 42.308 0.00 0.00 42.67 3.32
3741 4507 7.774247 TGACTACAAAGGCACAGCATTAGCT 62.774 44.000 0.00 0.00 44.54 3.32
3742 4508 2.749621 ACTACAAAGGCACAGCATTAGC 59.250 45.455 0.00 0.00 42.56 3.09
3743 4509 4.002982 TGACTACAAAGGCACAGCATTAG 58.997 43.478 0.00 0.00 35.10 1.73
3744 4510 4.014569 TGACTACAAAGGCACAGCATTA 57.985 40.909 0.00 0.00 35.10 1.90
3746 4512 2.566833 TGACTACAAAGGCACAGCAT 57.433 45.000 0.00 0.00 35.10 3.79
3747 4513 2.153645 CATGACTACAAAGGCACAGCA 58.846 47.619 0.00 0.00 45.94 4.41
3748 4514 2.154462 ACATGACTACAAAGGCACAGC 58.846 47.619 0.00 0.00 45.94 4.40
3749 4515 3.565482 ACAACATGACTACAAAGGCACAG 59.435 43.478 0.00 0.00 45.94 3.66
3750 4516 3.550820 ACAACATGACTACAAAGGCACA 58.449 40.909 0.00 0.00 45.94 4.57
3754 4520 4.275689 TCAGCAACAACATGACTACAAAGG 59.724 41.667 0.00 0.00 0.00 3.11
3755 4521 5.422666 TCAGCAACAACATGACTACAAAG 57.577 39.130 0.00 0.00 0.00 2.77
3759 4525 5.362556 ACAATCAGCAACAACATGACTAC 57.637 39.130 0.00 0.00 0.00 2.73
3761 4527 4.613944 CAACAATCAGCAACAACATGACT 58.386 39.130 0.00 0.00 0.00 3.41
3762 4528 3.182972 GCAACAATCAGCAACAACATGAC 59.817 43.478 0.00 0.00 0.00 3.06
3763 4529 3.382855 GCAACAATCAGCAACAACATGA 58.617 40.909 0.00 0.00 0.00 3.07
3766 4532 1.202510 GGGCAACAATCAGCAACAACA 60.203 47.619 0.00 0.00 39.74 3.33
3767 4533 1.501169 GGGCAACAATCAGCAACAAC 58.499 50.000 0.00 0.00 39.74 3.32
3770 4536 0.681175 AAGGGGCAACAATCAGCAAC 59.319 50.000 0.00 0.00 39.74 4.17
3771 4537 0.680618 CAAGGGGCAACAATCAGCAA 59.319 50.000 0.00 0.00 39.74 3.91
3783 4631 0.255890 TCTGCATAGGAACAAGGGGC 59.744 55.000 0.00 0.00 0.00 5.80
3787 4635 6.108687 TGTAGAACATCTGCATAGGAACAAG 58.891 40.000 0.00 0.00 34.19 3.16
3791 4639 5.118990 GCTTGTAGAACATCTGCATAGGAA 58.881 41.667 0.00 0.00 38.83 3.36
3891 4751 0.311790 GTAGACACGTGTGGTTCCGA 59.688 55.000 28.82 4.30 34.19 4.55
3956 4819 1.092921 TTTGGACACTGACGTGGTGC 61.093 55.000 15.42 9.75 45.50 5.01
4182 5045 4.397103 TCCATTCAGAAATGTGCACTCATC 59.603 41.667 19.41 12.67 40.63 2.92
4243 5106 7.268586 ACTGTAAATATGAGTGAGTGTGGATC 58.731 38.462 0.00 0.00 0.00 3.36
4244 5107 7.093333 TGACTGTAAATATGAGTGAGTGTGGAT 60.093 37.037 0.00 0.00 0.00 3.41
4245 5108 6.210584 TGACTGTAAATATGAGTGAGTGTGGA 59.789 38.462 0.00 0.00 0.00 4.02
4287 5150 4.610680 GCCGTGTCAACTCTTACATGTTTC 60.611 45.833 2.30 0.00 31.93 2.78
4289 5152 2.806244 GCCGTGTCAACTCTTACATGTT 59.194 45.455 2.30 0.00 31.93 2.71
4360 5238 1.821061 CGTCCTCTCCACTGTTGCCT 61.821 60.000 0.00 0.00 0.00 4.75
4456 5334 2.603473 TAGGCAGGCACTCACCGT 60.603 61.111 0.00 0.00 36.85 4.83
4458 5336 1.376037 GTGTAGGCAGGCACTCACC 60.376 63.158 0.00 0.00 34.60 4.02
4459 5337 0.671781 CAGTGTAGGCAGGCACTCAC 60.672 60.000 0.00 2.57 43.27 3.51
4464 5342 1.371183 GTCACAGTGTAGGCAGGCA 59.629 57.895 0.00 0.00 0.00 4.75
4465 5343 0.250295 TTGTCACAGTGTAGGCAGGC 60.250 55.000 0.00 0.00 0.00 4.85
4466 5344 2.254546 TTTGTCACAGTGTAGGCAGG 57.745 50.000 0.00 0.00 0.00 4.85
4467 5345 3.141398 ACATTTGTCACAGTGTAGGCAG 58.859 45.455 0.00 0.00 0.00 4.85
4468 5346 3.138304 GACATTTGTCACAGTGTAGGCA 58.862 45.455 5.84 0.00 44.18 4.75
4497 5375 2.350772 GGTCTTGCACTTTTCCGTGATG 60.351 50.000 0.00 0.00 37.06 3.07
4498 5376 1.880027 GGTCTTGCACTTTTCCGTGAT 59.120 47.619 0.00 0.00 37.06 3.06
4499 5377 1.305201 GGTCTTGCACTTTTCCGTGA 58.695 50.000 0.00 0.00 37.06 4.35
4500 5378 0.041312 CGGTCTTGCACTTTTCCGTG 60.041 55.000 0.00 0.00 37.94 4.94
4501 5379 0.463116 ACGGTCTTGCACTTTTCCGT 60.463 50.000 12.57 12.57 44.87 4.69
4502 5380 0.661020 AACGGTCTTGCACTTTTCCG 59.339 50.000 11.55 11.55 42.94 4.30
4504 5382 1.477105 GCAACGGTCTTGCACTTTTC 58.523 50.000 4.50 0.00 44.34 2.29
4531 5409 4.729798 GTACGCACAAACCGCCGC 62.730 66.667 0.00 0.00 0.00 6.53
4543 5421 2.858158 GACAACGCCAAGGTACGC 59.142 61.111 0.00 0.00 0.00 4.42
4630 5512 4.740822 ATCGGCAGCAACCCCACC 62.741 66.667 0.00 0.00 0.00 4.61
4665 5547 4.371975 TGCCGAAAAAGGGAGACG 57.628 55.556 0.00 0.00 0.00 4.18
4669 5551 0.889186 GAGCACTGCCGAAAAAGGGA 60.889 55.000 0.00 0.00 0.00 4.20
4774 5659 4.728102 TTGCCGGTCTACACGCGG 62.728 66.667 12.47 1.27 38.62 6.46
4938 5823 4.208686 CTGGACGCGGAGGCTACC 62.209 72.222 12.47 2.60 36.88 3.18
4950 5835 2.266055 CTTCGCCTGGACCTGGAC 59.734 66.667 21.06 10.94 0.00 4.02
5004 5889 1.531423 AGCAACAATGGCTGACTGAG 58.469 50.000 0.00 0.00 40.80 3.35
5005 5890 1.881973 GAAGCAACAATGGCTGACTGA 59.118 47.619 0.00 0.00 41.66 3.41
5007 5892 1.985473 TGAAGCAACAATGGCTGACT 58.015 45.000 0.00 0.00 41.66 3.41
5008 5893 2.602878 CATGAAGCAACAATGGCTGAC 58.397 47.619 0.00 0.00 41.66 3.51
5019 5904 3.478226 CTCGCTCGCATGAAGCAA 58.522 55.556 17.47 1.92 46.13 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.