>input_sequence_24819
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----------------------------------------------ACCGGCAGCGGCGTGCCGGCGACGGTGGTTTGAT
TTGTCGTCCCTTCCCTCGCCAACTAGCCGGCCCCCGGACCCGGCATCCCCCCCTTCCCATCCCATCCCGCCCCGC----C
CCGATGAAGATCACGGCGCTGCTGGTGCTCCGGTCCCCGGGGGACGCCTCCTCCTCCTCGTCCTCCT------CGGCCGG
AGGGGGCGGCGCTGGGGAGCAGCAGCAGGCGGCGGTGCTGGCGAACGCGTCGGACGTGACCCGCTTCGGCTTCTTCCAGC
GGCCGGCCGCGCGCGAGTTCATCGTCTTCGTCGCCCGCACCGTCGCGCTCCGCACCCGCGCCGGCACCCGCCAGACCGTC
CAGCACCAAGGTGACCGCCACCCCTCTCCGCCGCTCGAATCTGGCCTGAATCTGTTCTGAATCTGATCTGACGCCCTCCG
CCTGGCCTCCCCTGCCCCTG----CCGCCCGCAGAGTACAAGGTGCATTGCTACAACCAGGGCGGCCTCTGCGCCGTCGC
CTTCACCGACGACCACTACCCCGTCCGGAGCGCCTTCTCCCTCCTCGGCAAGGTGCCGCCGCCT----------------
---------------------------CCAAGATTAATGCTTTCCTCTGCGATCAGTCGATTCCCCCCTGACGTTTTCTT
CTTGTACTGAAAAAACAGTGAATCTGATTGTTGTGTTCACCACGTTAGTCTCACTCACATTGGTTATTCCTTTGGATTCT
CGCAGGTTCTTGAGGAATACCTGAAGAGTTTCGGAGACTCGTGGAGGACAGCGGAAGACAAGGCCACCCAGCATTGGCAA
TATCTCGACGACGCCTTGGCTAAATACCAGGTCCACTCATTTGATCATCTCCAATGTTTTTCTGTCGCTGCTTGAGCAAG
TATGTAGCTCTCTGTCAGGTTGTAGCCTTGAAAGATGTAAATGCACATCTCTG-------GGCAGGTGCCTTGGAAATCT
GAGTTTGTAACAATTTCCTATTTGGTC----GTGGATAGTGACGATAGCAGGCTCTGCATCTAGGCACCCTGAAGAATAT
TGCAACTGACAGAAGCAAGCAAATCATAAACATTGTCTGCGCGCCCATTCTTATGATCTTCACATTCAGAATCATTATAC
TTCCAGTCCAGATTTGTTCAAATGCCATTTGACCATCTCT-AATGTTTCTCTATCACTGCTTGAATAAGTAGCTCTTTTG
GTTGTAGCTTTTG--------AAAATGTAAACGCACATCTCTGTCAGCTGACTGAGTTCCTTGGAATTCTTAGTTCATAA
TCTCCAATTTTGACGATAGTAGCTTCTTGCATCCAGGTGAATGCGATGCATAAACATAATGCAACTTAT-AGAGCAAGCA
AATCATATAAATTATTTGCACACCCATTGTTATGGACTCAACACTTTGCCTGACATTCATAACCATTATACTTCCTCCTG
TCCAAATTTGTTGTCTTATGACGTGATAGTGTCCCACTTGTTGTTCACATGGAACCTGGCCCCGGTTCAGTGGTAGCTGG
AAATTGGAGATAATAATAATAATAATAAGTTTCTTGCTAGTTGGGTTATTTACTTATGCACATATTCCGTGTATTAGAGA
TAAGTTTTCCTGAACTTTCGAGATTGTCTCTTATGGGTTGGTCAAGTCTGTCC-TACAAAAGGGATACCATCATATCCAC
TTCCAATTAATGAATATAATGAATTGTGTGTGTCCGATACAGCATTATCTCTTCCAAATTT-ATAGTCAAATCTCACCCT
TCTGGTTGGTCTTTCCTTTAGGGTAGTTGTCCATTGGGGGCTCATGTTCTCAACAAAATTACTTGTCATTCTGGCTCTGT
TGTCCATACATGTAGTATGAAGAGTTTGTGCTTCGATTATTGACATGACTTGCGCCTAATAATTGTACAATCATCTCTCT
AACATCAGTGCCAATAAGCACTACCAATAAACAATCATAATGTTCATGCAACCAAAATCAACTTGCC---AAAAGCCTAA
AACATCATCTATTTTAAACTGTAGCCAGTAGCTTTGTCCATGGAGTGGGTTCAGACAAGATCCATGCATAGTTTTT----
--------GCCTCTT------------GTTTTCTGGGTATTTCTGCAAATTTAAAATACCTACCTCAAGCATGGTTTTAC
TGCTTAGACGATGCTTGTTTTGTCAGT-AATTGATCTGTTTGCCTTCCGATTATTTTT-GCTATAGGATCCTGCAGAGGC
CAACAAACTGATGAAGATCCAGAGAGACTTAGATGAAACCAAGATTATTCTTGTAAGTATGCTATCCCTGTGAACCTAAT
TGCATTCCTCTTTTAACTTATTGCCTATGTTCTGAATATATTGTTTATGGATGTGCGCGAATGGTTATATTGTTCAGTTG
TGTTCACTGTTCAGCAAAGACTGCATTATGTGTA-------------TCAGCTTTATGTTCAGTTCAGATTCGGTCCCGT
TGCACCATGAGTGAGCA--TGCG--CATATAGATCGTACATAATTAACAAGCTAGGTGTATTGCCGGAATTTGATTTATG
TGAACAGTTGGACACAAGTACCTATGTCTGTTCTTTTTTCTGCA------------------------------------
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----------------------------------CATCTGTTTATCCATAATTTGGGTGATTGCAGCACAAGACCATCGA
CAGCGTGCTGCAAAGGGGCGAACGACTGGATAGCCTAGTAGAGAAGAGTTCTGATCTAAGCGTCGCTTCACAGGTAGGGA
TGCAC---TTTTTTTTCTCATTGGGTCATCGTGGTATGCTAATTGATAGATCCATGCTATGGATAGTGGTTATGGCAAGT
GGACCTGTAACATTATGCCCCCTTTTAGCTAATGCTGTGCCTTTGTAGTCATGTTGT-----------------------
-----------------------------------------------------------TGCTGATTGTTGCCCCTTGTT
CCTATGCAGATGTTCTACAAGCAGGCCAAGAAAACCAACTCCTGCTGCACAATCCTGTAATAACCAAGC-----------
-GGTAGTGGCGTCGAGCTCGATCACTAGTATCGGAACCACACGTGTCTACATCCATTTTCTCTGCTATGATCCTGAGACG
TAGTA---ACTGTCATAAGCACCACGTCAGTGTCCAAACAGTGTATTGAACAACTAGTTGTCATGTGTGATTCTCTGTAA
ATAATGCATAAGTTTGGTC-------------------------------------------------------------
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-
>chr3D_1_TraesCS3D01G519200
AAATAATGGGGTTTGGTATCAAAGGCAATGAATCACCCATCACACCACATAAACAAAACATTAGAGAATAAAACAAAGGG
ATATCTTGATGCTCCAGGCACAAATACCATATATTCCTATCTCGACATCTGGTACATATGATGTGAATAATGGCTCTTTG
CTAATTAACAGCCAGAAGAGTACTACAGCGCATTGCATGATACCCTATCTGTTACTATGTAAAGTCTCT-------AAAT
AAAGCTTGAAAAATAAGACGGGAGACTCCTTTTTTTTAGGGGAAGACGGGAGACTCCTGAGATGCTCCATGTCAACGATT
CCTAATAACTTCCTCTATATAACTGAGCGACGAAGTCTCTCTCTCTCTCTCTCTC-------------------------
-----------------------------------------------------------AACCCGTATAAAGTTACTTAA
CTGAGCCCTATATATGTGCTACATGTTTTGATTGATTTTTTTTCTTTCGTTTCATTGCACAACACGTTCAT---------
--------------------------------------------------------------------------------
------------------------------TTGTCAGTGGGCATGTCGCGCTGTATAGGAAGTATTTTTGCCTGCCATAT
GTGCAGCCAAATTTCGGTTAGTTTGGTC------CTAGCCCTAGCACCCCGACGTCTGTATTCTTTCCGTAATAA-----
-TACTTCTACCGGCTTCGGCTTTGGTAATGAATAAATCCATAATTT---TTT--CAAATCTGTATCAGGATTGTGTTTGC
TCCCGAGGGCATAGCGGCTCCCTTGACGTACGGCTCCTGCCGTTGTGGCGCTGCTATGTGGGCCTGTTTCCCAATAAGCC
CACCTGTTAGTGGTCGGACGGCACCCTGCCGAACGGCAGAGGATCCTCGTCCGGATTTCGGTA--TGTATGGTGGATCCA
AGTTCCTTAAGAACAAAGGCAAAT-----AAATAAATAAATACAGGAGGATAATAAACACAATGGATCACACACACGGCA
TCGCATAAGCAAA-CCAGAGGAAAAT------AAAAACAAGAAGCAAAACAGAGGAGACGGCCCACGTCGACTCCT----
CCTCCCCCCAAATCGCATCGCAT-CGCATTCGCCGACGCGACACGCACCGGCAGCGGCGTGCCGGCGACGGTGGTTTGAT
TTGTCGTCCCTTCCCTCGCCAACTAGCCGGCCCCCGGACCCGGCATCCCCCCCTTCCCATCCCATCCCGCCCCGC----C
CCGATGAAGATCACGGCGCTGCTGGTGCTCCGGTCCCCGGGGGACGCCTCCTCCTCCTCGTCCTCCT------CGGCCGG
AGGGGGCGGCGCTGGGGAGCAGCAGCAGGCGGCGGTGCTGGCGAACGCGTCGGACGTGACCCGCTTCGGCTTCTTCCAGC
GGCCGGCCGCGCGCGAGTTCATCGTCTTCGTCGCCCGCACCGTCGCGCTCCGCACCCGCGCCGGCACCCGCCAGACCGTC
CAGCACCAAGGTGACCGCCACCCCTCTCCGCCGCTCGAATCTGGCCTGAATCTGTTCTGAATCTGATCTGACGCCCTCCG
CCTGGCCTCCCCTGCCCCTG----CCGCCCGCAGAGTACAAGGTGCATTGCTACAACCAGGGCGGCCTCTGCGCCGTCGC
CTTCACCGACGACCACTACCCCGTCCGGAGCGCCTTCTCCCTCCTCGGCAAGGTGCCGCCGCCT----------------
---------------------------CCAAGATTAATGCTTTCCTCTGCGATCAGTCGATTCCCCCCTGACGTTTTCTT
CTTGTACTGAAAAAACAGTGAATCTGATTGTTGTGTTCACCACGTTAGTCTCACTCACATTGGTTATTCCTTTGGATTCT
CGCAGGTTCTTGAGGAATACCTGAAGAGTTTCGGAGACTCGTGGAGGACAGCGGAAGACAAGGCCACCCAGCATTGGCAA
TATCTCGACGACGCCTTGGCTAAATACCAGGTCCACTCATTTGATCATCTCCAATGTTTTTCTGTCGCTGCTTGAGCAAG
TATGTAGCTCTCTGTCAGGTTGTAGCCTTGAAAGATGTAAATGCACATCTCTG-------GGCAGGTGCCTTGGAAATCT
GAGTTTGTAACAATTTCCTATTTGGTC----GTGGATAGTGACGATAGCAGGCTCTGCATCTAGGCACCCTGAAGAATAT
TGCAACTGACAGAAGCAAGCAAATCATAAACATTGTCTGCGCGCCCATTCTTATGATCTTCACATTCAGAATCATTATAC
TTCCAGTCCAGATTTGTTCAAATGCCATTTGACCATCTCT-AATGTTTCTCTATCACTGCTTGAATAAGTAGCTCTTTTG
GTTGTAGCTTTTG--------AAAATGTAAACGCACATCTCTGTCAGCTGACTGAGTTCCTTGGAATTCTTAGTTCATAA
TCTCCAATTTTGACGATAGTAGCTTCTTGCATCCAGGTGAATGCGATGCATAAACATAATGCAACTTAT-AGAGCAAGCA
AATCATATAAATTATTTGCACACCCATTGTTATGGACTCAACACTTTGCCTGACATTCATAACCATTATACTTCCTCCTG
TCCAAATTTGTTGTCTTATGACGTGATAGTGTCCCACTTGTTGTTCACATGGAACCTGGCCCCGGTTCAGTGGTAGCTGG
AAATTGGAGATAATAATAATAATAATAAGTTTCTTGCTAGTTGGGTTATTTACTTATGCACATATTCCGTGTATTAGAGA
TAAGTTTTCCTGAACTTTCGAGATTGTCTCTTATGGGTTGGTCAAGTCTGTCC-TACAAAAGGGATACCATCATATCCAC
TTCCAATTAATGAATATAATGAATTGTGTGTGTCCGATACAGCATTATCTCTTCCAAATTT-ATAGTCAAATCTCACCCT
TCTGGTTGGTCTTTCCTTTAGGGTAGTTGTCCATTGGGGGCTCATGTTCTCAACAAAATTACTTGTCATTCTGGCTCTGT
TGTCCATACATGTAGTATGAAGAGTTTGTGCTTCGATTATTGACATGACTTGCGCCTAATAATTGTACAATCATCTCTCT
AACATCAGTGCCAATAAGCACTACCAATAAACAATCATAATGTTCATGCAACCAAAATCAACTTGCC---AAAAGCCTAA
AACATCATCTATTTTAAACTGTAGCCAGTAGCTTTGTCCATGGAGTGGGTTCAGACAAGATCCATGCATAGTTTTT----
--------GCCTCTT------------GTTTTCTGGGTATTTCTGCAAATTTAAAATACCTACCTCAAGCATGGTTTTAC
TGCTTAGACGATGCTTGTTTTGTCAGT-AATTGATCTGTTTGCCTTCCGATTATTTTT-GCTATAGGATCCTGCAGAGGC
CAACAAACTGATGAAGATCCAGAGAGACTTAGATGAAACCAAGATTATTCTTGTAAGTATGCTATCCCTGTGAACCTAAT
TGCATTCCTCTTTTAACTTATTGCCTATGTTCTGAATATATTGTTTATGGATGTGCGCGAATGGTTATATTGTTCAGTTG
TGTTCACTGTTCAGCAAAGACTGCATTATGTGTA-------------TCAGCTTTATGTTCAGTTCAGATTCGGTCCCGT
TGCACCATGAGTGAGCA--TGCG--CATATAGATCGTACATAATTAACAAGCTAGGTGTATTGCCGGAATTTGATTTATG
TGAACAGTTGGACACAAGTACCTATGTCTGTTCTTTTTTCTGCA------------------------------------
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----------------------------------CATCTGTTTATCCATAATTTGGGTGATTGCAGCACAAGACCATCGA
CAGCGTGCTGCAAAGGGGCGAACGACTGGATAGCCTAGTAGAGAAGAGTTCTGATCTAAGCGTCGCTTCACAGGTAGGGA
TGCAC---TTTTTTTTCTCATTGGGTCATCGTGGTATGCTAATTGATAGATCCATGCTATGGATAGTGGTTATGGCAAGT
GGACCTGTAACATTATGCCCCCTTTTAGCTAATGCTGTGCCTTTGTAGTCATGTTGT-----------------------
-----------------------------------------------------------TGCTGATTGTTGCCCCTTGTT
CCTATGCAGATGTTCTACAAGCAGGCCAAGAAAACCAACTCCTGCTGCACAATCCTGTAATAACCAAGC-----------
-GGTAGTGGCGTCGAGCTCGATCACTAGTATCGGAACCACACGTGTCTACATCCATTTTCTCTGCTATGATCCTGAGACG
TAGTA---ACTGTCATAAGCACCACGTCAGTGTCCAAACAGTGTATTGAACAACTAGTTGTCATGTGTGATTCTCTGTAA
ATAATGCATAAGTTTGGTCAGGTTGTGAGTTGCGTTTGCTGCTGCGTTCAAGCTACTTGCCAGTGCCATTTCTTAGAGAC
ATGGACTAACTCCCTAGTAGCATTTTCTCGTCTATAACTGAACGGATGGCTAACACATTTCCATAGAAAAAAGAGCAGAG
GACAGATGAGTGCACATTTCTGAATGGATCCCAAAGTTTTTGCACTAGGCAGATGAAATGATGATGATCCACACTCACTC
ATATTTACAGTCATTCAAAAGACAGGTACGAA---------------ACATGTAAGAGTTGACACGGCGGCAAAGCGAAG
GACAATGATTTCAGCTAGCTCCAGGAGGACAGCAACAAGGCAACAGTGGAGAGGACGGCCATCAGGAGGCCAATCATGGC
GCCCCCGGCGCGGACTGGCTCGGCGGCACGCCCGGCCACCTGCACGAAAAGCGACGGTGAGTGCCTGCCTACACTGTGAC
AAATGTCACGTCGCCATCACGGAAAAGTGCAAGACCGTTGCCGGGCCGGCGGCGGTTTGTG----CGTACCTTGGCGTTG
TCGTCGGCGCGGGTCGTGTCCGGGAGCGGGCGCACGGTGGCGGTGTCGGTGACGCCGGTGGGCAGCGGCACGGTGGGGTT
GCTGCCGATGAACGGGTACCCCTCGCCGTCT---CCCTTTTTCGGCAGTGCTCCGGATGGGCCGCTCGCAGAGACGCCCA
CCGTCGGCTCCAGCGGGAACCCGAAGTGCGGCGTGGTGGTCGCCTGCGGCTCCGGGGCCCGCGTGTAGACCGGCAACGGC
GGGCGAGACGATGGCAGGCCGTCGGCCCCTGCGGTCGGCGACGGCGACGGAGCGTGGTGCGGCGATGCCGGAGCAGGCGA
GTGCCCGTGCTGACGGTGGTGGTGGTGCGGGCGCGGGGACGCTGCAGGTGCAGGGCCGTGGCGGTAGCCTCCGCGTCCAG
GTCCAGGCGAAGGTTGCCGCTGCGAGAAAGAAGTTATAGGAGCAGCAGCTCAGTCAGCCATTGTTGCTTCATGCGAGCGA
G
>chr3A_5
----AATGGGGTTTAGTATGAAAGTCAATGGATCACCCACCACACCACATAAATAAAACATGAGAGAATAGAACAAAGGG
ATTTCTTGATGCTCCAGGAACAAATACCATATATTCCCATCTCAACATCTGATACATATGCTCTAAATAATTGCCTTTTG
CTAATTAACATCCGGAGTATTGCAAT---GCATTGCACGATACCCTATCTTGTACTATGTAAAAGTCCTTAAAACAAACT
AAAGCTTGAAAAACAAGATGGCAAACTCCTTTTTTAGGGTG--AGATGGGAGACTCCTGAGATGCTCCATGTCAACCATT
CCTCCTTCCTTCCTCTCTTTCCCCCAACCGAAATGCACAACATCATATTTGCCGATGCGGCATGCGCCGACCACGGCATG
GTGGTGGTAGTGCTTTGGTTCTTTCCCCACTATCCAATTGCCAAGTTCCAAGTTTGCATAACCCATATAAAATTACTTAA
CTTAACCCTAGATACGTCCTACTTGTTTTGATTTATTGCAC-------------------------------ACAGATGC
CCGCCATTGCAAT-CTTATAACTTTCGCCATGATTAAATCATGAACAGAATTCCAGTGCTAACGTTGGGGTGATGACACA
GGACACGGGACCCTTCATCCAGCACGTTCATTGCCAGCGGGCATGTCGCGCTATGTAGGAAGTGTTTT-GCCCGCTATAT
GTGCGGCGAAATTTCAGTTCGTTTGGTC------CTAGCCCTAGCACCCCGACGTCCGAATTCTTTCCATAATAATG---
---CTTCTACCGACTTCGACTTTGGTAACGAATATATCCAAAAATAAAATTT--CAAATCTGTATCAGGATTGTGTTTGC
TCCCGAAGGCAT--------------------------------------------------------------------
----------------------------------------------------GGATTTCGGTATGTGTATGGTGGATCCA
AGTTCCTTAAGAACAAAGGCAAAT-----AAATAAATAAATAAATA--------AAACACAATGGATCACACACACGGCA
TCGCATAAGCAAAACCAGAGGAGAAT------AAAAACAAGAAATAAAACACGGGAGACGGCCCACGTCGGCGGTCCCTC
CCTCCCCCCAAATCGCATCGCATTCGCATTCGCCGACGCGGCACGCACCGGCAGCGGCGTGCCGGCGACGGCGGTTTGAT
TTCTTGTCCCTTCCCTCGCCAAGTAGCCGCCCCCCGGACCCGGCATCCCCCC-TTCCCCTCGCATTCCGTCCCGCCCAAC
CCGATGAAGATCACGGCGCTGCTGGTGCTCCGGAGCCCCGGGGACGCCTCCTCCTCGTCATCCTCGGTGACGGCGGTAGG
AGGGGCTGGCGGCGGGGAGCCGCAGCAGGCGGCGGTGCTGGCGAACGCGTCGGACGTGACCCGCTTCGGCTTCTTCCAGC
GGCCCGCCGCGCGCGAGTTCATCGTCTTCGTCGCCCGCACCGTCGCGCTCCGCACCCGCGCCGGCACCCGCCAGACCGTC
CAGCACCAAGGTGACCACC-CCCCTCTCCGTCGCTCGAATCTGGCCTGAATCTGTTGCGAATCTGATCTGACGCCCTCCG
CCA-----CCCCTGCCCCCG----CT----GCAGAGTACAAGGTGCATTGCTACAACCAGGGCGGCCTCTGCGCCGTCGC
CTTCACCGACGACCACTACCCCGTCCGGGGCGCCTTCTCCCTCCTCGGCAAGGTGCCGCCGCCT----------------
---------------------------CCAAGATTAATGCTTTCCTCTGTTATCAGTCGATTCCCCCCTGACGCTTTCTT
CTTGTACTAAAAAAAGGGTGAATCTGATTGTTGTGTTCACCGCGTTAGTCTCGCTCACATTGGTTATTTCTTCGGATTCT
CGCAGGTTCTTGAGGAGTACCTGAAGAGTTTCGGAGAGTCGTGGAGGACAGCGGAAGACAAGGCCACCCAGCATTGGCAA
TATCTTGATGACGCCTTGGCTAAATATCAGGTCCACTCATTTGATCATCTCCAATGTATTTCTGTCGCTGCTTGAGTAAG
TATATAGCGTTCTGTCGGGTTCTGGCCTTCCAAGATGTAAATGCACATCTCTGTTAGCTAGGTAGGTGCCTTGGAATTCT
GAGTTTGTAACAATTTCCTATTTGGTC----GTGGATAGTGACGATAGCAGGCTCTGCATCTAGGCACCCTGAAGAATAT
TGCAACTGACAGAAGCAAGCAAATCATATACATTGTTTGCGCGCCCATTCTTATGATCTTCACATTCAGAATCATTATAC
TTACAGTCCAGATTTGTTCAAATGCCATTTGACCATCTCT-AATGTTTCTCTATCACTGCTTGAATAAGTAGCTCTTTCG
GTTGTAGCTTTTG--------AAGATGTAAATGCACATCTCTGTCAGCTGACTGAGTTCCTTGAAATTCTTAGTTCATAA
TCTCCAATTTTGTCGACAGTAGCTTCTTGCATCTAGGTGAATGCGATGCTTAAACATAATGCACCTTATAAGAGCAAGCA
AATCATATAAATTATTTGCACACCCATTGTTATGAACTTAACACTTTGACTGACATTCATAACCATTATATTTCCCCCTG
TCCAAATTTGTTGTCTTATGACTTAATAGTGTCTCATTTGCTGTTCATATGGAGTCTGGCCCCGGTGCAGTGGTAGCTAA
AAGTTATAG------ATAATAATAATCAGTTTCTTGCTAGTTGGGTTATTTACTTCTGCACATATTTTGTGTATTGGAGA
TAAGTTTTCCTGAACTTCCGAGATTGTCTCTTATGGGTTGGTCAAGTCTGTCCCTAGAAAAGGGATAACATCATATCCAC
TTACAATTAATGAA---------TTGTGTGTGTCCGAT----------CTCTTCCAAATAT-ATAGTCAAATCTCACCCT
TCCGGTTGGTCTTTCCTGTAGGGTAGTTGTCCATTGGGGGCTCATCTTCTCAACAAA-TTACTTGTCATTTTGGCTCTGT
AGTCCATACATGTAGTATAAAGAGTTTGTGCTTCAATTATTGACATGAGTTGCGCCTAATAATTGTACAATCACCTCTCT
AACATCAGTGCCAATAAGCACTG-CAATAAACAATCATCATGTCCATGCAACCAAAATCAACTTGCCAAAAAAAGCCTGA
AACATCATCTATTTTAAACTGTAGC---TAGCTTTGTCCATGGAGTGGGTTCAGACAGGATCCATGTATAGTTTTTGCAT
CTTTTTTGGCCTCTT------------GTTTTCTGGGTATTTCTGCAAATTTAAAATACCTACCTCAAGCATGGTGTTAC
TGCTTAGACGATGCTTGTTTTGTCAGT-AATTGATCTGTTTGCCTTCCGATTATTTTT-GCTGTAGGATCCTGCAGAGGC
CGACAAGCTGATGAAGATCCAGAGAGACTTAGATGAAACCAAGATTATTCTTGTAAGTATGATATCCCTGTGAACCTAAT
TGCATTCCTCCTTTAACTTATTGCCTATGTTCTGAATATATTGTTTATGGATGTGCGCGAATGGTTATATTGTTCAGTTG
TGTTCACTGTTCAGCAAAGACTGCATTATGTGTACTCCCTGGTAGTATCTGCTTTGTGTTCAGTTCAGACTCGGTCCCGG
CGCACCATGAGTGAGCATGTGCG--CATATAGATCATACATAATTAACAAGCTAGGTGTATTGCCGGAATTTGATTTATG
TGAACAGTTGGACACAAGTACCTATGTCTGTTCTTTTTTTTGCA------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------CATCTGTTTATCCATAATTTGGGTGATTGCAGCACAAGACCATCGA
CAGTGTGCTGCAAAGAGGCGAACGGCTGGATAGCCTGGTAGAGAAGAGTTCTGATCTAAGCGTCGCTTCACAGGTAGGGT
TGTATGTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GATCGACTGGTTAGTTTATGATGATGATGTTGTGCTGATTTTTCCCCTTTGCT
CCTATGCAGATGTTCTACAAGCAGGCCAAGAAAACCAACTCCTGCTGCACAATCCTGTAATAACCAAGCTCAGCTCCCTA
GGGTAGCGGCGTCGAACTCGATCACTAGTACCGGAACCACACGTGTCTACATCCATTTTCTCTGCTATGATCCTGAGACG
TAGTAGTAACTGTCATAAACACCACGTCAGTGTCCAAAAAGTGTATTGAATAACTCGTTGTCATGTGTGATTCTCTGTAA
ATAATGCATAAGTTTGGTCAGGTTGTGAGTTGCGTTT-CTGCTGCGTTCAAGCTACTTGCCACTGCCATTTCTTAGAGAC
TTAAACTAACTCCCTAGTGGTATTTTCTCGTCTACAACTGAACTGATGGCTCACACATTTCCAGAGAAAAAAGAACAGAG
GACAAATGAGTGCACATTTCTGAATGGATCCCAAAGTTTTTGCACTAGGCAGATGAAATGATGAC---CCACACTCACTC
ATATTTACAGTCATTCAAAAGACAGGTAC---------------------------------------------------
--------------------------------------------------------------------------------
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-
>chr3B_369
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------AACCCATATAAAGTTACTTAA
CTGAGCCCTATATGCGTGCTACATGTTTTGATTGATTTTTTGTCTACAGAAACCATGAAGAAAAATATATCAACAGGTGC
CCGCCATTGCAACCCTGATAACTTCTGCCATGATTAAATCATCAAAAGAGTTCCAGTGCAAACGTTGGGGCGAGAACACG
GGGACATATGACCCACCACCCTTGTTC---------GCGGGCATGTCGCGCTATATAGGAAATGCTTTTGCCCACCATAT
GCACGGCAAAATTTCGGTTTGTTTGGTCCTGGGCCTAGCACTAGCACCCCGACGTCTGAATTCTTTCCATAATACTAGTA
GTACTTCTACCGACTTCGGCTTTGGTAACGAATAAATCTATTAACTTTTCTTTCCAAATCTTTATCAGGATTGTGTTTGC
TCCCGAAGGCAT--------------------------------------------------------------------
----------------------------------------------------GGATTTCGGTATGTGTATGGTGGATCCA
AGTTCCTGAAGAACAAAGGCAACAACAAAAAATAAATAAATAAACA--------ATGCATCGCATA--------------
------AACCAAA-CCAGAGGAGAATAAAAATAAAAACAAGAAACAAAACACGGGAGACGGCCCACGTCGACGGTCCCTC
---CCCCCCAAATCGCATCGCATTCGC------CGACGCGGCACGCACCGGCACCGGCGTGCCGGCGACGGCGGTTTGAT
CTGTCGTCCCTTCCTTCGCCAACTAGCCGGCCTCCGGACCCTCGCA--------TCCCATCTCGCCCCGCGCCGC----C
CCGATGAAGATCACGGCGCTGCTGGTGCTCCGGTCCCCGGGGGACGCCTCCTCCTCGTCGTCCTCGA------CGGCGGG
AGGGGGCGGCGGCGGTGAGCTGCAGCAGGCAGCGGTGCTGGCGAACGCGTCGGACGTGACCCGCTTCGGCTTCTTCCAGC
GGCCGGCCGCGCGCGAGTTCATCGTCTTCGTCGCCCGCACCGTCGCGCTCCGCACCCGCGCCGGCACCCGCCAGACCGTC
CAGCACCAAGGTGACCACC-CCCCTCTCCGCCACTCGAATCTGG-----------TCTGAATCTGGTCTGACGCCCTCCG
CCT-----CCCCTGCCCCTGCCGCCT----GCAGAGTACAAGGTGCATTGCTACAACCAGGGCGGCCTCTGCGCCGTCGC
CTTCACCGACGACCACTACCCCGTCCGGAGCGCCTTCTCCCTCCTCAGCAAGGTGCCGCCGCCCCACCTGCAAATCTCCA
ACGCGCTCCTCGCCTGCCCATCTGTTCCCAAAATGACTGCTTTTCCCATTGTTTGCCTGTAGTAATACTA----------
--------------------AATCTCATTGTCGTGTCCACGACGTTGGTCTCGCTCACATAGGTCATTCCTTCGGAGTCT
CGCAGGTTCTTGAGGAGTACCTGAGGAGTTTCGGAGAGTCGTGGAGGACAGCGGAAGACAAGGCCGCCCAGCATTGGCAA
TATCTCGACGACTCCTTGACTAAATATCAGGTCCACTCATTTGATCATCTCCAATGTTTTTCTGTCGCTGCCTGAGTAAG
TACGTAGCGCTCTGTCGGGTTGTGGCTTTCGAAGATGTAAATGCACATCTGTC--AGCTGGGCAGGCGCCTTGGAATTCT
GAGTTCATAACCATTAATTTCTTATTTGGCTGTGGATAGTGACGATAGCAGGCTCTGCATCTAGGCACCCTGAAATATAT
TGCAACTGACAGAAGCAAGAAAATCATATACATTGTTTGCACGCCAATTCTTATGAATTTCACATTCAGAATCATTACAC
TTCCAGTCCAGATTTGTTCGAATGCAATTTGACCATCTCTAAATGTTTCTCTATCACTGCTTGAATAAGTAGCTCTTTCG
GTTGTTGCTTTTGAGTATGTAAAGTTGTAAACGCACATCTCTGTCAGCTGAATGAGTTTCTTGGAATTCTTAGTTCATAA
TCTCCAATTTTGACGATAGTTGCTTCTTGCATCTAGGTGAATGTGATGCTTAAACATAATGCAACTTAT-AGAGCAAGCA
AATCATATAAATTATCTGCA-ACCCATTGTTATGAACTTAACACTTTGACTGACATTCATAGCCATTATATTTCCCCCTG
TCCAAATTTGTTGTCTTATGACTTAATAGTGTCCCATTTGCTGTTCGTATGGAGCCTGGCCCCGGTGCAGTGGTAGCTGA
AAGTTATAG------ATAATAATAATCAGTTTCTTGCTAGTTGGGTTATTTACTTCTGCACATATTTTGTGTATTGGAGA
TAAGTTTTCCTGAACTTCCGAGATTGTCTCTTATGGGTTGGTCAAGTCTGTCCCTAGAAAAGGGATAACATCATATCCAC
TTACAATTAATGAA---------TTGCGTGTGTCCGATAGAGCATTATCTCTTCCAGATATAATAGTCAAATCTCACCCG
TCCGGTTGGTCTTTCCTGTAGGGTAGTTGTCCATTGGGGGCTCATGTTCTCAACAAA-TTACTTGTCATTTTGGCTCTGT
AGTCCATACATGTAGTATAAAGAGTTTGTGCTTCGATTATTGACATGAGTTGTTCCTAATAATTATACAATCATCTCTCT
AACATCAGTGCCAATAAGCACTACCAATAAACAATCATCATGTTCATGCAACCAAAATGAACTTACC---AAAAGCCTAA
AACAACATCTGTTTTAAACTGTAGCCAGTAGCTTTGTCCATGGAGTGGGTTCAAACAAGATCCATGCATAGTTTTT----
--------GCCTCTTTTTTGGCCTCGTGTTTTCTGGGTATTTCTGCAAATTTAAAATACCTACCTCAAGCATGGTTTTAC
TGCTTAGACGAGCCTTGTTTTGTCAGTAAATTGATCTGTTTGCCTTCCGATTATTTTTTGCTGTAGGATCCTGCAGAGGC
CGACAAGCTGCTGAAGATCCAGAGAGACTTAGATGAAACCAAGATTATTCTTGTAAGTATGCTATCCCTGTGAACCTAAT
TGTATTCCTCCTTTAACTTATTGCCTATGTTCTGAATATATTGTTTATGGATGTGCGCGAATGCTTATATTGTTCAGTTG
TGTTCACTATTCAGCAAAGACTGCATTATGTATA-------------TCTGCTTTGTGTTCAGTTCAGACTCAGTGCCAT
TGCACCATGAGTAAGCA--TGTGCACATATACATGGTACATAATTAACAAGCTAGGCGTATTCATGGAATTCGATTTACA
TGGACAGTTGGACATAAGTACTCGCATAGGTTGGAATTTTTTTTATCAGGGCAGAAATTTTGAAGCCCTGCTCGTCCTGG
CTGTTTAAATCAACTTTTACCATATCAAATGTGTACCATGTAGATTTACTAGCTATTCTCACAGCACTTGCTTAAACAAA
CAATCCAAAGTTGAACCCATAGGAATTCATTTTTATTGCACGACAGTTTGGATAATGTCGCTGTGAACAATGAGTCCAGG
TGTTTTCTCTTTTTGTGCAAGAATCCGAACATTTCAGGATGTATGCTACTCCTTCCGTCCAAAAAAACTTCTCCCAAACT
TGTCTCTTAAATTGATGTATCTAGCACTAACTTGATGCTAGATACATTCATTTAAGGGACAAGCTTTTTCGGACGGACGG
AGTATTTATGTAGTTGGATGTTATGTTTCCCACCCATCTGTTTATCCATAATTTGGGTGATTGCAGCACAAGACCATCGA
CAGCGTGCTGCAAAGGGGCGAACGATTGGATAGCCTGGTAGAGAAGAGTTCTGATCTAAGCGTCGCTTCACAGGTAGGGA
TGTATGTTTTTTTTTTCTCATTGGGTCATCCTGGTATGCTAATTGATTGATCCATGCAAGCAAGCGAACCTA--------
------GTAACGTTAGGCCCCTAATACAACAGGCAGGAGAGTTTCTCCCCAGATTTATGTAGCACTGTACGTAGATTCAG
AAAGTTATGCTCATAGCCTCATGGGTCGATCAATTGGTTCACTTACGATGC--ATATCGTGCTGACTGTTTCCAGTTGCC
CATCTGCAGATGTTCTACAAGCAGGCCAAGAAAACCAACTCCTGCTGCACAATCCTGTAATAACCAAGCTCAGCTCCCTA
GGGTAGCGGCGTCGAGCTCGACCACCAGTACCGGAACCACACGTGTCTACATCCATTTTCTCTGCTATGATCCTGAGACG
T---AGTAACTGTCATAAACACCACGTCAGTGTCCAAAAAGTGTGTTGAACAACTAGTTCTCATGTGTGATTCTCTGTAA
ATAATGCATAAGTTTGGTCAGGTTGCGAGTTGCGTTTGCTGCTGCGTTCAAGCTGCTTGCCACTGCCATTTCTTAGAGAC
ATGGACTAACTCCCTAGTAGCATTTTCTCGTCTATAACTGAACGGATGGCTCACACATTTCCAAAACAAAAA-AGCAGAG
GACAAATGAGTGCACATTTCTGAATGGATCCCAAAGTTTTTGCACTAGGCGGATGAAATGATGAT---CCACACTCACTC
ATATTTACAGTCACTCAAAAGACAGGTACTACCACCGGTAGTACAACACATGTAAGAGTTGACACGGCGGCAAAGCGAAG
GACAATGATTTCAGCTAGCTCCAGGAGGACAGCAACAGGGCAACAGTGGAGAGGACGGCCATCAGGACGCCAATCATGGC
GGCCCCGGCTCGCACGGGCTCGGCGGCACGCCCGGCCACCTGCACGAAAAGCGGCCATGAGC----GCCTACACAGTGAC
AAATGTCACGTCGCATCACGGAAAAAGGGCAGGACCGTTGCCGGCCCGCCGGCGGTTTGTACGTACGTACCTTGGCGTTG
TCGTCGGCGCGGGTCGTGTCCGGGAGCGGGCGCACGGTGGCGGTGTCGGTGACGCCGGTGGGCAGCGGCACCGTGGGGTT
GCTGCCGATGAACGGGTACCCCTCGCTGCCGGCCCCCTTTTTCGGCAGTGCTCCGGACGGGCCGCCCGCGGTGACGCCCA
CCGTCGGCTCCAGCGGGAACCCGAAGTGCGGCGTGGTGGTCGCCTGCGGCTCCGGGGCGCGCGTGTAGACCGGGGCCGGC
GGGCGAGACGTTGGCAGGCCGTCTGACCCCGCGGT------CGGTGACGGAGCGTGGTGCGGCG---CCGGTGCCGGCGA
GACGCCGTGCTGACGGTGGTGGTGGT---GGCGCGGGGACGCCGCAGGTGCAGGGCCGTGGTAGTAGCCTCCGCCTCCAG
GGCCAGGCGAAGGTTGCCGCTGCGAGAAAAAAAAGTTTACGGAGGAGCAGC--TCAGCCATTGCTGCTTCCTGCGAGCGA
G
>SNPs
SSSS----------S----S----S-----S--------S-------------S-------S--------S---------
--S---------------S------------------S-----S-------S--------S-S-S------S--SS----
----------S--S--SS-S-S-S-SSSS--------S------------SS-----------SSSS-----------S-
-------------S----S--S-S-----------SSS-S-SS---S-----------------------------S---
---SS-SS--------S-S-SS-SS-S-SSSS-S-SSSSS-SSSS-S-S-SS-SS-------------------------
----------------------------------------------------------------S---------------
--------------S--------------------------S---SSS-SSS-SS--S-S--S-SSS-SSS---------
--------------------------------------------------------------------------------
---------------------------------S---S--------------S----------S--------S-------
----S--S-----------S--------------------------------------S---------S-----------
------------S---------------S--------------S------------------------------------
------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
------------------------------------------S-SSSSSSSSSS--------------------------
----------------------S--------------------S-------SS-------------------SSSS----
----------------------------------------S------------------------------S--------
----------------------------------------------------S--------S------------------
--------------------------------------------------------S--------SS----------S--
-----------SS-------S-----------------------------------------------------------
--------------------------------------------------------------------------------
----------------S--S------------------------------------------------------------
---SSSSS-----------------SSSSS--------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-----------------------S------
--------S------SS-----------------------------------S-------------------S-------
----------------S--------------------S------------------------------------------
--------------------------S-------------------------------------------------S---
--------S-------S------S-----SS---------------------------------------------S---
--------------------------------------------------------------------------------
----------------------------S-------S-------------------------------------------
------------------------------------------------------------------------------S-
-----------------------S--------------------------------------------------------
---------------------------------S---------------S------------------------------
----------------------------------S---S---------S---------------------S----S----
----------------------S-S-----------S---S------S-----S------------S------------S
--S--SS--SSSSSS-----------S----------------------------S----------SS-------S----
-----------------S--------------------------------------S----------S------------
--S-----------SSSSSSSSS----------------S-------------------S--------------------
--S--------------S---------------------------------------S------------S---------
S-----------------S-----------------------------S-------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-S----S-------------------------------------------------------------------------
----------S---------------------------------------------------------------------
-------------------------------------------------S-----S-------------S----------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--S-S-------------------------S----------------S---------S-SSS-SS-SSSS--SSSSSSSS
SSSSSS-----S---S-----SSS-SSSSS-SSSSS-S-SS---S-SSS--SS--SS-----------------------
----------------------------------------------------------------------S---S---S-
--------------------------------------------------------------------------------
------S-----------------------S-------------------------------------------------
------------------S-------------------S-----------------------------------------
--------------------------------------------------------------S-----------------
---------------------------------------------------S-----------S----------------
----S------------------------------------------------------------SSS------------
-----------------------------S-S------------------------------------------------
-------------------------------------S-----------------------------S------------
-S-------S--S--S-------------------------------------S-SS----SSSSS--------S-----
--------------SSSSSS-S-----S---S------------S---S-----------S-------------------
-----------------------------------------------------------------------S--------
--------------------------S-S-S--------------------------S-------S---S-S--------
----------------------------------------------------------S--------------SSS----
----------S------------S-S---S-----SSSSSS---S-------------------SSS----S--S-----
-SSS----------------------SSS-------------S------------------SS-----------S-----
-S---------------------------S--SSSS-SSSS-SS-SSSSS-SS----------S------S---------
-
>forward_951
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TGCTATGTGGGCCTGTTTCC---------
--------------------------------------------------------------------------------
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>reverse_2357
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------CTGCGCGCCCATTCTTATGA------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-
>forward_980
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CACCTGTTAGTGGTCGGACG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2675
--------------------------------------------------------------------------------
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----------------------------------GACTCAACACTTTGCCTGACA-------------------------
--------------------------------------------------------------------------------
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-
>forward_2610
--------------------------------------------------------------------------------
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------------------------------ATCCAGGTGAATGCGATGCA------------------------------
--------------------------------------------------------------------------------
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-
>reverse_3503
--------------------------------------------------------------------------------
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--------------------------------------------------------------ATAGGATCCTGCAGAGGC
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_2800
--------------------------------------------------------------------------------
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-------------------------------------------------------------CCGGTTCAGTGGTAGCTGG
--------------------------------------------------------------------------------
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>reverse_5343
--------------------------------------------------------------------------------
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--------------------------------------------------------------GCCTGCCTACACTGTGAC
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
