Multiple sequence alignment - TraesCS3D01G487300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G487300 chr3D 100.000 2790 0 0 1 2790 582827282 582824493 0.000000e+00 5153.0
1 TraesCS3D01G487300 chr3D 80.511 313 54 4 1007 1317 580587668 580587361 1.670000e-57 233.0
2 TraesCS3D01G487300 chr3D 87.417 151 17 2 2076 2224 582823086 582823236 3.690000e-39 172.0
3 TraesCS3D01G487300 chr3D 90.789 76 7 0 1 76 335220488 335220563 4.920000e-18 102.0
4 TraesCS3D01G487300 chr3B 93.201 1162 61 8 917 2075 778456056 778457202 0.000000e+00 1692.0
5 TraesCS3D01G487300 chr3B 93.793 290 12 5 575 862 778455771 778456056 5.520000e-117 431.0
6 TraesCS3D01G487300 chr3B 90.941 287 16 8 259 537 778455261 778455545 7.290000e-101 377.0
7 TraesCS3D01G487300 chr3B 83.388 307 45 3 1005 1308 779307845 779307542 2.120000e-71 279.0
8 TraesCS3D01G487300 chr3B 81.350 311 55 1 1007 1317 776121387 776121080 1.660000e-62 250.0
9 TraesCS3D01G487300 chr3B 78.816 321 63 3 1000 1319 778403903 778404219 7.830000e-51 211.0
10 TraesCS3D01G487300 chr3B 78.750 320 63 3 1000 1318 778392322 778392637 2.820000e-50 209.0
11 TraesCS3D01G487300 chr3B 97.333 75 2 0 1 75 778455194 778455268 8.110000e-26 128.0
12 TraesCS3D01G487300 chr3B 90.541 74 7 0 3 76 685258277 685258350 6.360000e-17 99.0
13 TraesCS3D01G487300 chr6A 89.819 717 46 5 2074 2788 383080235 383080926 0.000000e+00 894.0
14 TraesCS3D01G487300 chr6A 89.542 153 14 2 2074 2224 383084027 383083875 2.840000e-45 193.0
15 TraesCS3D01G487300 chr7D 88.276 725 63 17 2073 2788 469833590 469834301 0.000000e+00 848.0
16 TraesCS3D01G487300 chr7D 100.000 29 0 0 308 336 593685066 593685038 1.000000e-03 54.7
17 TraesCS3D01G487300 chr2D 86.689 601 57 17 2074 2665 548628866 548628280 0.000000e+00 645.0
18 TraesCS3D01G487300 chr2D 82.412 199 31 4 69 265 4194061 4194257 1.330000e-38 171.0
19 TraesCS3D01G487300 chr2D 83.889 180 25 4 80 258 534132753 534132929 4.780000e-38 169.0
20 TraesCS3D01G487300 chr2D 92.473 93 4 3 2698 2788 548628287 548628196 2.260000e-26 130.0
21 TraesCS3D01G487300 chr2D 81.000 100 18 1 249 348 645896676 645896774 8.290000e-11 78.7
22 TraesCS3D01G487300 chr1A 87.015 593 52 9 2209 2788 560177397 560176817 0.000000e+00 645.0
23 TraesCS3D01G487300 chr1A 93.478 46 3 0 76 121 586358163 586358118 4.990000e-08 69.4
24 TraesCS3D01G487300 chr1A 96.970 33 1 0 316 348 485004558 485004590 3.880000e-04 56.5
25 TraesCS3D01G487300 chr2A 85.849 424 42 12 2074 2485 16255880 16256297 4.270000e-118 435.0
26 TraesCS3D01G487300 chr2A 80.541 185 28 5 79 258 17956665 17956484 4.850000e-28 135.0
27 TraesCS3D01G487300 chr2A 92.958 71 4 1 6 76 595400361 595400430 4.920000e-18 102.0
28 TraesCS3D01G487300 chr2A 84.000 75 12 0 269 343 771620334 771620408 3.850000e-09 73.1
29 TraesCS3D01G487300 chr6D 84.463 354 40 12 2074 2419 318968455 318968801 4.450000e-88 335.0
30 TraesCS3D01G487300 chr6D 84.127 315 33 13 2073 2377 318969119 318968812 3.520000e-74 289.0
31 TraesCS3D01G487300 chr6D 84.259 108 16 1 240 347 440639602 440639496 1.370000e-18 104.0
32 TraesCS3D01G487300 chr6D 85.057 87 13 0 75 161 367322192 367322278 3.830000e-14 89.8
33 TraesCS3D01G487300 chr6B 89.655 203 19 2 2073 2274 558599178 558599379 9.920000e-65 257.0
34 TraesCS3D01G487300 chr6B 91.549 71 5 1 7 77 26006042 26005973 2.290000e-16 97.1
35 TraesCS3D01G487300 chr6B 89.706 68 6 1 7 74 26119594 26119660 4.950000e-13 86.1
36 TraesCS3D01G487300 chr3A 81.145 297 52 2 1007 1303 716106528 716106236 4.650000e-58 235.0
37 TraesCS3D01G487300 chr3A 79.937 319 61 2 1000 1318 716098203 716097888 6.010000e-57 231.0
38 TraesCS3D01G487300 chr3A 89.189 74 8 0 1 74 453313377 453313450 2.960000e-15 93.5
39 TraesCS3D01G487300 chr3A 79.208 101 13 3 250 349 453313435 453313528 2.320000e-06 63.9
40 TraesCS3D01G487300 chr4A 79.245 318 60 4 1001 1317 731391576 731391888 1.680000e-52 217.0
41 TraesCS3D01G487300 chr4A 90.566 53 3 2 113 165 672195218 672195268 4.990000e-08 69.4
42 TraesCS3D01G487300 chr4D 89.610 77 7 1 1 76 334111614 334111538 2.290000e-16 97.1
43 TraesCS3D01G487300 chr7A 85.897 78 10 1 1 77 161646953 161647030 6.400000e-12 82.4
44 TraesCS3D01G487300 chr1B 96.970 33 1 0 316 348 516953331 516953363 3.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G487300 chr3D 582824493 582827282 2789 True 5153.0 5153 100.000 1 2790 1 chr3D.!!$R2 2789
1 TraesCS3D01G487300 chr3B 778455194 778457202 2008 False 657.0 1692 93.817 1 2075 4 chr3B.!!$F4 2074
2 TraesCS3D01G487300 chr6A 383080235 383080926 691 False 894.0 894 89.819 2074 2788 1 chr6A.!!$F1 714
3 TraesCS3D01G487300 chr7D 469833590 469834301 711 False 848.0 848 88.276 2073 2788 1 chr7D.!!$F1 715
4 TraesCS3D01G487300 chr2D 548628196 548628866 670 True 387.5 645 89.581 2074 2788 2 chr2D.!!$R1 714
5 TraesCS3D01G487300 chr1A 560176817 560177397 580 True 645.0 645 87.015 2209 2788 1 chr1A.!!$R1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 1.001293 AGCGTTCTGAGCAATGTCTCA 59.999 47.619 7.06 7.06 40.50 3.27 F
567 576 1.089112 CAACAGCATGCCGATCAAGA 58.911 50.000 15.66 0.00 42.53 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 1555 1.219664 GCCGGCCATGTACACAGTA 59.780 57.895 18.11 0.00 0.00 2.74 R
2178 2380 0.387929 CCCTGTATGCGTACGTGGAT 59.612 55.000 22.13 9.21 33.36 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 9.952030 TGTTAGATGTCATATAACCAGTGAAAA 57.048 29.630 21.79 4.06 36.41 2.29
87 88 9.911788 AGATGTCATATAACCAGTGAAAAAGAT 57.088 29.630 0.00 0.00 0.00 2.40
90 91 9.109393 TGTCATATAACCAGTGAAAAAGATAGC 57.891 33.333 0.00 0.00 0.00 2.97
91 92 8.276325 GTCATATAACCAGTGAAAAAGATAGCG 58.724 37.037 0.00 0.00 0.00 4.26
92 93 3.831715 AACCAGTGAAAAAGATAGCGC 57.168 42.857 0.00 0.00 0.00 5.92
93 94 2.778299 ACCAGTGAAAAAGATAGCGCA 58.222 42.857 11.47 0.00 0.00 6.09
94 95 2.484264 ACCAGTGAAAAAGATAGCGCAC 59.516 45.455 11.47 0.00 0.00 5.34
95 96 2.744202 CCAGTGAAAAAGATAGCGCACT 59.256 45.455 11.47 2.60 37.09 4.40
96 97 3.932710 CCAGTGAAAAAGATAGCGCACTA 59.067 43.478 11.47 0.00 35.09 2.74
97 98 4.572389 CCAGTGAAAAAGATAGCGCACTAT 59.428 41.667 11.47 0.00 41.98 2.12
98 99 5.753438 CCAGTGAAAAAGATAGCGCACTATA 59.247 40.000 11.47 0.00 39.28 1.31
99 100 6.074088 CCAGTGAAAAAGATAGCGCACTATAG 60.074 42.308 11.47 0.00 39.28 1.31
100 101 5.463724 AGTGAAAAAGATAGCGCACTATAGC 59.536 40.000 11.47 0.00 39.28 2.97
112 113 2.847133 GCACTATAGCGTCGCTAATAGC 59.153 50.000 29.13 24.04 44.62 2.97
113 114 3.669824 GCACTATAGCGTCGCTAATAGCA 60.670 47.826 29.13 9.37 44.62 3.49
114 115 4.663166 CACTATAGCGTCGCTAATAGCAT 58.337 43.478 29.13 15.97 44.62 3.79
115 116 4.497251 CACTATAGCGTCGCTAATAGCATG 59.503 45.833 29.13 19.05 44.62 4.06
116 117 3.577649 ATAGCGTCGCTAATAGCATGT 57.422 42.857 29.13 8.87 44.62 3.21
117 118 2.225068 AGCGTCGCTAATAGCATGTT 57.775 45.000 20.25 1.00 42.58 2.71
118 119 3.364889 AGCGTCGCTAATAGCATGTTA 57.635 42.857 20.25 0.00 42.58 2.41
119 120 3.914312 AGCGTCGCTAATAGCATGTTAT 58.086 40.909 20.25 0.00 42.58 1.89
120 121 5.055642 AGCGTCGCTAATAGCATGTTATA 57.944 39.130 20.25 0.00 42.58 0.98
121 122 5.096169 AGCGTCGCTAATAGCATGTTATAG 58.904 41.667 20.25 2.93 42.58 1.31
122 123 4.259451 GCGTCGCTAATAGCATGTTATAGC 60.259 45.833 10.68 10.47 42.58 2.97
125 126 5.763444 CGCTAATAGCATGTTATAGCGTT 57.237 39.130 26.23 9.82 42.58 4.84
126 127 5.776081 CGCTAATAGCATGTTATAGCGTTC 58.224 41.667 26.23 8.45 42.58 3.95
127 128 5.573282 CGCTAATAGCATGTTATAGCGTTCT 59.427 40.000 26.23 8.26 42.58 3.01
128 129 6.453003 CGCTAATAGCATGTTATAGCGTTCTG 60.453 42.308 26.23 12.17 42.58 3.02
129 130 6.586463 GCTAATAGCATGTTATAGCGTTCTGA 59.414 38.462 7.49 0.00 41.89 3.27
130 131 7.201393 GCTAATAGCATGTTATAGCGTTCTGAG 60.201 40.741 7.49 0.00 41.89 3.35
131 132 3.126831 AGCATGTTATAGCGTTCTGAGC 58.873 45.455 0.00 0.00 35.48 4.26
132 133 2.866156 GCATGTTATAGCGTTCTGAGCA 59.134 45.455 0.00 0.00 37.01 4.26
133 134 3.309682 GCATGTTATAGCGTTCTGAGCAA 59.690 43.478 0.00 0.00 37.01 3.91
134 135 4.024556 GCATGTTATAGCGTTCTGAGCAAT 60.025 41.667 0.00 0.00 37.01 3.56
135 136 5.438117 CATGTTATAGCGTTCTGAGCAATG 58.562 41.667 0.00 0.00 37.01 2.82
136 137 4.503910 TGTTATAGCGTTCTGAGCAATGT 58.496 39.130 0.00 0.00 37.01 2.71
137 138 4.566759 TGTTATAGCGTTCTGAGCAATGTC 59.433 41.667 0.00 0.00 37.01 3.06
138 139 3.533606 ATAGCGTTCTGAGCAATGTCT 57.466 42.857 0.00 0.00 37.01 3.41
139 140 1.719600 AGCGTTCTGAGCAATGTCTC 58.280 50.000 0.00 0.00 37.01 3.36
140 141 1.001293 AGCGTTCTGAGCAATGTCTCA 59.999 47.619 7.06 7.06 40.50 3.27
141 142 1.127582 GCGTTCTGAGCAATGTCTCAC 59.872 52.381 3.84 0.00 38.11 3.51
142 143 2.681706 CGTTCTGAGCAATGTCTCACT 58.318 47.619 3.84 0.00 38.11 3.41
143 144 3.838120 CGTTCTGAGCAATGTCTCACTA 58.162 45.455 3.84 0.00 38.11 2.74
144 145 4.237724 CGTTCTGAGCAATGTCTCACTAA 58.762 43.478 3.84 0.69 38.11 2.24
145 146 4.686091 CGTTCTGAGCAATGTCTCACTAAA 59.314 41.667 3.84 0.00 38.11 1.85
146 147 5.349817 CGTTCTGAGCAATGTCTCACTAAAT 59.650 40.000 3.84 0.00 38.11 1.40
147 148 6.128445 CGTTCTGAGCAATGTCTCACTAAATT 60.128 38.462 3.84 0.00 38.11 1.82
148 149 7.063426 CGTTCTGAGCAATGTCTCACTAAATTA 59.937 37.037 3.84 0.00 38.11 1.40
149 150 8.721478 GTTCTGAGCAATGTCTCACTAAATTAA 58.279 33.333 3.84 0.00 38.11 1.40
150 151 9.453572 TTCTGAGCAATGTCTCACTAAATTAAT 57.546 29.630 3.84 0.00 38.11 1.40
151 152 9.102757 TCTGAGCAATGTCTCACTAAATTAATC 57.897 33.333 3.84 0.00 38.11 1.75
152 153 7.909267 TGAGCAATGTCTCACTAAATTAATCG 58.091 34.615 3.84 0.00 38.11 3.34
153 154 7.763985 TGAGCAATGTCTCACTAAATTAATCGA 59.236 33.333 3.84 0.00 38.11 3.59
154 155 8.668510 AGCAATGTCTCACTAAATTAATCGAT 57.331 30.769 0.00 0.00 0.00 3.59
155 156 8.554528 AGCAATGTCTCACTAAATTAATCGATG 58.445 33.333 0.00 0.00 0.00 3.84
156 157 8.338259 GCAATGTCTCACTAAATTAATCGATGT 58.662 33.333 0.00 0.00 0.00 3.06
160 161 9.863845 TGTCTCACTAAATTAATCGATGTACAA 57.136 29.630 0.00 0.00 0.00 2.41
167 168 9.580916 CTAAATTAATCGATGTACAATGTTCCG 57.419 33.333 0.00 0.00 0.00 4.30
168 169 3.944422 AATCGATGTACAATGTTCCGC 57.056 42.857 0.00 0.00 0.00 5.54
169 170 2.665649 TCGATGTACAATGTTCCGCT 57.334 45.000 0.00 0.00 0.00 5.52
170 171 3.786516 TCGATGTACAATGTTCCGCTA 57.213 42.857 0.00 0.00 0.00 4.26
171 172 4.112716 TCGATGTACAATGTTCCGCTAA 57.887 40.909 0.00 0.00 0.00 3.09
172 173 4.689071 TCGATGTACAATGTTCCGCTAAT 58.311 39.130 0.00 0.00 0.00 1.73
173 174 5.834169 TCGATGTACAATGTTCCGCTAATA 58.166 37.500 0.00 0.00 0.00 0.98
174 175 5.918576 TCGATGTACAATGTTCCGCTAATAG 59.081 40.000 0.00 0.00 0.00 1.73
175 176 5.388475 CGATGTACAATGTTCCGCTAATAGC 60.388 44.000 0.00 1.41 38.02 2.97
176 177 4.760878 TGTACAATGTTCCGCTAATAGCA 58.239 39.130 13.15 0.00 42.58 3.49
177 178 5.364778 TGTACAATGTTCCGCTAATAGCAT 58.635 37.500 13.15 0.00 42.58 3.79
178 179 4.818534 ACAATGTTCCGCTAATAGCATG 57.181 40.909 13.15 2.85 42.58 4.06
179 180 4.199310 ACAATGTTCCGCTAATAGCATGT 58.801 39.130 13.15 2.83 42.58 3.21
180 181 4.640201 ACAATGTTCCGCTAATAGCATGTT 59.360 37.500 13.15 0.00 42.58 2.71
181 182 5.820423 ACAATGTTCCGCTAATAGCATGTTA 59.180 36.000 13.15 0.00 42.58 2.41
182 183 6.486657 ACAATGTTCCGCTAATAGCATGTTAT 59.513 34.615 13.15 0.00 42.58 1.89
183 184 7.659799 ACAATGTTCCGCTAATAGCATGTTATA 59.340 33.333 13.15 0.00 42.58 0.98
184 185 7.834068 ATGTTCCGCTAATAGCATGTTATAG 57.166 36.000 13.15 2.93 42.58 1.31
185 186 6.755206 TGTTCCGCTAATAGCATGTTATAGT 58.245 36.000 13.15 0.00 42.58 2.12
186 187 6.645003 TGTTCCGCTAATAGCATGTTATAGTG 59.355 38.462 13.15 7.33 42.58 2.74
187 188 5.168569 TCCGCTAATAGCATGTTATAGTGC 58.831 41.667 13.15 6.84 42.58 4.40
188 189 4.031765 CCGCTAATAGCATGTTATAGTGCG 59.968 45.833 23.31 23.31 45.69 5.34
189 190 4.857037 CGCTAATAGCATGTTATAGTGCGA 59.143 41.667 24.68 0.00 45.69 5.10
190 191 5.516696 CGCTAATAGCATGTTATAGTGCGAT 59.483 40.000 24.68 5.74 45.69 4.58
191 192 6.691388 CGCTAATAGCATGTTATAGTGCGATA 59.309 38.462 24.68 6.40 45.69 2.92
192 193 7.379797 CGCTAATAGCATGTTATAGTGCGATAT 59.620 37.037 24.68 4.64 45.69 1.63
193 194 9.678941 GCTAATAGCATGTTATAGTGCGATATA 57.321 33.333 7.49 0.00 45.69 0.86
195 196 8.581057 AATAGCATGTTATAGTGCGATATAGC 57.419 34.615 2.17 0.16 45.69 2.97
196 197 5.965922 AGCATGTTATAGTGCGATATAGCA 58.034 37.500 6.39 6.39 45.69 3.49
211 212 7.485825 CGATATAGCACGCTAATAGCATATC 57.514 40.000 13.15 14.01 42.58 1.63
212 213 7.301789 CGATATAGCACGCTAATAGCATATCT 58.698 38.462 18.82 10.91 42.58 1.98
213 214 7.805542 CGATATAGCACGCTAATAGCATATCTT 59.194 37.037 18.82 3.71 42.58 2.40
216 217 8.864069 ATAGCACGCTAATAGCATATCTTAAG 57.136 34.615 13.15 0.00 42.58 1.85
217 218 6.925211 AGCACGCTAATAGCATATCTTAAGA 58.075 36.000 13.15 7.82 42.58 2.10
218 219 7.032580 AGCACGCTAATAGCATATCTTAAGAG 58.967 38.462 13.15 0.00 42.58 2.85
219 220 7.030165 GCACGCTAATAGCATATCTTAAGAGA 58.970 38.462 13.15 6.81 42.58 3.10
220 221 7.008810 GCACGCTAATAGCATATCTTAAGAGAC 59.991 40.741 13.15 0.44 42.58 3.36
221 222 8.023706 CACGCTAATAGCATATCTTAAGAGACA 58.976 37.037 13.15 0.00 42.58 3.41
222 223 8.024285 ACGCTAATAGCATATCTTAAGAGACAC 58.976 37.037 13.15 2.42 42.58 3.67
223 224 8.023706 CGCTAATAGCATATCTTAAGAGACACA 58.976 37.037 13.15 0.00 42.58 3.72
224 225 9.868277 GCTAATAGCATATCTTAAGAGACACAT 57.132 33.333 11.53 0.00 41.89 3.21
239 240 8.565896 AAGAGACACATTATTTTGTCATAGCA 57.434 30.769 6.66 0.00 43.94 3.49
240 241 8.743085 AGAGACACATTATTTTGTCATAGCAT 57.257 30.769 6.66 0.00 43.94 3.79
241 242 8.618677 AGAGACACATTATTTTGTCATAGCATG 58.381 33.333 6.66 0.00 43.94 4.06
242 243 7.198390 AGACACATTATTTTGTCATAGCATGC 58.802 34.615 10.51 10.51 43.94 4.06
243 244 7.067859 AGACACATTATTTTGTCATAGCATGCT 59.932 33.333 25.99 25.99 43.94 3.79
244 245 8.224389 ACACATTATTTTGTCATAGCATGCTA 57.776 30.769 28.72 28.72 0.00 3.49
245 246 8.853126 ACACATTATTTTGTCATAGCATGCTAT 58.147 29.630 30.43 30.43 39.60 2.97
246 247 9.687210 CACATTATTTTGTCATAGCATGCTATT 57.313 29.630 32.84 20.72 37.16 1.73
305 306 9.362151 ACCAAAATAAGAAGTTCCAGTTTGATA 57.638 29.630 20.78 0.00 0.00 2.15
306 307 9.626045 CCAAAATAAGAAGTTCCAGTTTGATAC 57.374 33.333 20.78 0.00 0.00 2.24
321 322 5.746721 AGTTTGATACGAAAAACAAAGTGGC 59.253 36.000 0.00 0.00 38.48 5.01
343 344 4.137543 CCTTGTATACAGAAATGGAGGGC 58.862 47.826 5.56 0.00 0.00 5.19
367 368 9.797556 GGCGTATTGTATCACATCAGTATTATA 57.202 33.333 0.00 0.00 0.00 0.98
428 431 6.746745 GGTTAACCGAGAAATAACCATTCA 57.253 37.500 9.34 0.00 45.09 2.57
434 437 8.608844 AACCGAGAAATAACCATTCATAGATC 57.391 34.615 0.00 0.00 0.00 2.75
439 442 9.645059 GAGAAATAACCATTCATAGATCGATGA 57.355 33.333 13.81 13.81 33.96 2.92
454 457 2.297315 TCGATGAATCATAGCCGCTCTT 59.703 45.455 0.00 0.00 0.00 2.85
460 463 5.182487 TGAATCATAGCCGCTCTTACAAAA 58.818 37.500 0.00 0.00 0.00 2.44
461 464 5.822519 TGAATCATAGCCGCTCTTACAAAAT 59.177 36.000 0.00 0.00 0.00 1.82
465 468 7.801716 TCATAGCCGCTCTTACAAAATTATT 57.198 32.000 0.00 0.00 0.00 1.40
513 518 8.742554 AAAAATCCATAGCTAACAAGAAAACG 57.257 30.769 0.00 0.00 0.00 3.60
516 525 7.681939 ATCCATAGCTAACAAGAAAACGAAA 57.318 32.000 0.00 0.00 0.00 3.46
517 526 7.681939 TCCATAGCTAACAAGAAAACGAAAT 57.318 32.000 0.00 0.00 0.00 2.17
520 529 9.834628 CCATAGCTAACAAGAAAACGAAATAAA 57.165 29.630 0.00 0.00 0.00 1.40
546 555 6.961360 ATCCACGATCTACTTTCTATGTCA 57.039 37.500 0.00 0.00 0.00 3.58
547 556 6.378710 TCCACGATCTACTTTCTATGTCAG 57.621 41.667 0.00 0.00 0.00 3.51
548 557 4.979197 CCACGATCTACTTTCTATGTCAGC 59.021 45.833 0.00 0.00 0.00 4.26
549 558 5.450550 CCACGATCTACTTTCTATGTCAGCA 60.451 44.000 0.00 0.00 0.00 4.41
550 559 6.036470 CACGATCTACTTTCTATGTCAGCAA 58.964 40.000 0.00 0.00 0.00 3.91
551 560 6.020281 CACGATCTACTTTCTATGTCAGCAAC 60.020 42.308 0.00 0.00 0.00 4.17
552 561 6.036470 CGATCTACTTTCTATGTCAGCAACA 58.964 40.000 0.00 0.00 43.51 3.33
553 562 6.198029 CGATCTACTTTCTATGTCAGCAACAG 59.802 42.308 0.00 0.00 42.37 3.16
554 563 5.171476 TCTACTTTCTATGTCAGCAACAGC 58.829 41.667 0.00 0.00 42.37 4.40
555 564 3.743521 ACTTTCTATGTCAGCAACAGCA 58.256 40.909 0.00 0.00 42.37 4.41
556 565 4.330250 ACTTTCTATGTCAGCAACAGCAT 58.670 39.130 0.00 0.00 42.37 3.79
557 566 4.155462 ACTTTCTATGTCAGCAACAGCATG 59.845 41.667 0.00 0.00 42.37 4.06
564 573 3.189921 GCAACAGCATGCCGATCA 58.810 55.556 15.66 0.00 42.53 2.92
567 576 1.089112 CAACAGCATGCCGATCAAGA 58.911 50.000 15.66 0.00 42.53 3.02
569 578 1.825090 ACAGCATGCCGATCAAGAAA 58.175 45.000 15.66 0.00 42.53 2.52
570 579 1.470098 ACAGCATGCCGATCAAGAAAC 59.530 47.619 15.66 0.00 42.53 2.78
573 582 2.821969 AGCATGCCGATCAAGAAACTTT 59.178 40.909 15.66 0.00 0.00 2.66
617 814 5.443693 CGCTTGGAAACGTACACAATAGTAC 60.444 44.000 0.00 0.00 40.68 2.73
621 818 7.213216 TGGAAACGTACACAATAGTACTACA 57.787 36.000 4.31 0.00 41.65 2.74
624 821 7.594758 GGAAACGTACACAATAGTACTACAACA 59.405 37.037 4.31 0.00 41.65 3.33
668 865 4.219033 CAAAGTCACCATCGTTTTGCTAC 58.781 43.478 0.00 0.00 0.00 3.58
686 883 9.653287 TTTTGCTACATTATATTATCTCCTCCG 57.347 33.333 0.00 0.00 0.00 4.63
771 968 3.487042 GCAGCTGCATCAATAACAGTGAG 60.487 47.826 33.36 0.00 41.59 3.51
792 989 3.139025 AGGATCACCCCGATTTCAATGAT 59.861 43.478 0.00 0.00 33.17 2.45
795 992 4.235079 TCACCCCGATTTCAATGATTCT 57.765 40.909 0.00 0.00 0.00 2.40
826 1023 8.722394 AGACACGAATCTTTTTAATCTTTCTCC 58.278 33.333 0.00 0.00 0.00 3.71
844 1043 7.875041 TCTTTCTCCTTTTGACTGATAAGACAG 59.125 37.037 0.00 0.00 42.78 3.51
845 1044 5.482908 TCTCCTTTTGACTGATAAGACAGC 58.517 41.667 0.00 0.00 41.06 4.40
871 1070 9.567848 CTGACTAAGCAAAACTAACAAAAAGAA 57.432 29.630 0.00 0.00 0.00 2.52
875 1074 9.636965 CTAAGCAAAACTAACAAAAAGAATTGC 57.363 29.630 0.00 0.00 38.32 3.56
876 1075 7.608308 AGCAAAACTAACAAAAAGAATTGCA 57.392 28.000 9.03 0.00 39.37 4.08
877 1076 8.212317 AGCAAAACTAACAAAAAGAATTGCAT 57.788 26.923 9.03 0.00 39.37 3.96
878 1077 8.124199 AGCAAAACTAACAAAAAGAATTGCATG 58.876 29.630 9.03 0.00 39.37 4.06
879 1078 7.909641 GCAAAACTAACAAAAAGAATTGCATGT 59.090 29.630 0.00 0.00 38.13 3.21
880 1079 9.771915 CAAAACTAACAAAAAGAATTGCATGTT 57.228 25.926 3.78 3.78 35.41 2.71
885 1084 7.713764 AACAAAAAGAATTGCATGTTAGTCC 57.286 32.000 0.00 0.00 33.52 3.85
886 1085 5.920273 ACAAAAAGAATTGCATGTTAGTCCG 59.080 36.000 0.00 0.00 33.52 4.79
887 1086 5.957842 AAAAGAATTGCATGTTAGTCCGA 57.042 34.783 0.00 0.00 0.00 4.55
888 1087 6.515272 AAAAGAATTGCATGTTAGTCCGAT 57.485 33.333 0.00 0.00 0.00 4.18
889 1088 5.741388 AAGAATTGCATGTTAGTCCGATC 57.259 39.130 0.00 0.00 0.00 3.69
890 1089 5.028549 AGAATTGCATGTTAGTCCGATCT 57.971 39.130 0.00 0.00 0.00 2.75
891 1090 5.431765 AGAATTGCATGTTAGTCCGATCTT 58.568 37.500 0.00 0.00 0.00 2.40
892 1091 5.882557 AGAATTGCATGTTAGTCCGATCTTT 59.117 36.000 0.00 0.00 0.00 2.52
893 1092 7.047891 AGAATTGCATGTTAGTCCGATCTTTA 58.952 34.615 0.00 0.00 0.00 1.85
894 1093 7.716998 AGAATTGCATGTTAGTCCGATCTTTAT 59.283 33.333 0.00 0.00 0.00 1.40
895 1094 7.807977 ATTGCATGTTAGTCCGATCTTTATT 57.192 32.000 0.00 0.00 0.00 1.40
896 1095 6.603237 TGCATGTTAGTCCGATCTTTATTG 57.397 37.500 0.00 0.00 0.00 1.90
897 1096 5.527214 TGCATGTTAGTCCGATCTTTATTGG 59.473 40.000 0.00 0.00 37.95 3.16
898 1097 5.758296 GCATGTTAGTCCGATCTTTATTGGA 59.242 40.000 0.00 0.00 42.55 3.53
899 1098 6.073548 GCATGTTAGTCCGATCTTTATTGGAG 60.074 42.308 0.00 0.00 44.94 3.86
900 1099 6.785337 TGTTAGTCCGATCTTTATTGGAGA 57.215 37.500 0.00 0.00 44.94 3.71
901 1100 7.361457 TGTTAGTCCGATCTTTATTGGAGAT 57.639 36.000 0.00 0.00 44.94 2.75
902 1101 7.434492 TGTTAGTCCGATCTTTATTGGAGATC 58.566 38.462 4.45 4.45 44.94 2.75
903 1102 7.069455 TGTTAGTCCGATCTTTATTGGAGATCA 59.931 37.037 12.87 0.00 44.94 2.92
904 1103 6.485830 AGTCCGATCTTTATTGGAGATCAA 57.514 37.500 12.87 0.29 44.94 2.57
905 1104 6.520272 AGTCCGATCTTTATTGGAGATCAAG 58.480 40.000 12.87 5.32 44.94 3.02
906 1105 6.325028 AGTCCGATCTTTATTGGAGATCAAGA 59.675 38.462 12.87 7.13 44.94 3.02
907 1106 6.644592 GTCCGATCTTTATTGGAGATCAAGAG 59.355 42.308 12.87 1.44 44.94 2.85
908 1107 5.931146 CCGATCTTTATTGGAGATCAAGAGG 59.069 44.000 12.87 4.03 46.30 3.69
909 1108 5.407995 CGATCTTTATTGGAGATCAAGAGGC 59.592 44.000 12.87 0.00 46.30 4.70
910 1109 5.698741 TCTTTATTGGAGATCAAGAGGCA 57.301 39.130 0.00 0.00 38.95 4.75
911 1110 6.257994 TCTTTATTGGAGATCAAGAGGCAT 57.742 37.500 0.00 0.00 38.95 4.40
912 1111 6.294473 TCTTTATTGGAGATCAAGAGGCATC 58.706 40.000 0.00 0.00 38.95 3.91
913 1112 5.635278 TTATTGGAGATCAAGAGGCATCA 57.365 39.130 0.00 0.00 38.95 3.07
914 1113 3.555527 TTGGAGATCAAGAGGCATCAG 57.444 47.619 0.00 0.00 0.00 2.90
915 1114 1.140452 TGGAGATCAAGAGGCATCAGC 59.860 52.381 0.00 0.00 41.10 4.26
939 1138 4.264532 ACCATTTGGATCAATCAGTTCCCT 60.265 41.667 3.01 0.00 35.58 4.20
942 1141 5.982890 TTTGGATCAATCAGTTCCCTTTC 57.017 39.130 0.00 0.00 35.58 2.62
946 1145 2.778299 TCAATCAGTTCCCTTTCACCG 58.222 47.619 0.00 0.00 0.00 4.94
955 1154 4.881850 AGTTCCCTTTCACCGCTATAAATG 59.118 41.667 0.00 0.00 0.00 2.32
967 1166 4.150627 CCGCTATAAATGTCGACATCCAAG 59.849 45.833 30.06 23.07 35.10 3.61
970 1169 5.926542 GCTATAAATGTCGACATCCAAGCTA 59.073 40.000 30.06 14.82 35.10 3.32
1122 1321 4.487714 TGAAGACCTCAACAACAAGAGT 57.512 40.909 0.00 0.00 0.00 3.24
1188 1387 4.838152 CTCCATGGTGACCGGCCG 62.838 72.222 21.04 21.04 0.00 6.13
1227 1426 2.554462 CCTCATCGTCGAGTATGTGGAT 59.446 50.000 17.28 0.00 38.46 3.41
1233 1432 1.683917 GTCGAGTATGTGGATGAGGCT 59.316 52.381 0.00 0.00 0.00 4.58
1317 1516 3.694072 CCCAATTCATCGAGCAAAAGGTA 59.306 43.478 0.00 0.00 0.00 3.08
1320 1519 5.066375 CCAATTCATCGAGCAAAAGGTATGA 59.934 40.000 0.00 0.00 0.00 2.15
1334 1533 7.540055 GCAAAAGGTATGATTCTTCTCAAGTTG 59.460 37.037 0.00 0.00 0.00 3.16
1344 1543 3.967326 TCTTCTCAAGTTGAAGTCCCTCA 59.033 43.478 7.06 0.00 41.04 3.86
1345 1544 4.408921 TCTTCTCAAGTTGAAGTCCCTCAA 59.591 41.667 7.06 0.00 41.04 3.02
1356 1555 8.166726 AGTTGAAGTCCCTCAATTTCTTTAGAT 58.833 33.333 0.00 0.00 37.63 1.98
1406 1605 2.034305 GGATCGACCTTGCGTATGTACT 59.966 50.000 0.00 0.00 35.41 2.73
1417 1616 1.583856 CGTATGTACTTGCAGTGCTCG 59.416 52.381 17.60 9.57 31.77 5.03
1442 1641 2.525124 TTCTGGATGGCGGTGTGGT 61.525 57.895 0.00 0.00 0.00 4.16
1507 1706 1.525535 GAATCTGGCGCTGCTGGAT 60.526 57.895 7.64 1.38 0.00 3.41
1604 1803 4.147449 TGCTGGGCGTGATCGAGG 62.147 66.667 0.00 0.00 39.71 4.63
1767 1966 1.746727 CGAATCAAGCTCGCCGTCAG 61.747 60.000 0.00 0.00 0.00 3.51
1814 2013 1.133025 CAGTTTGGGGCATCGATCAAC 59.867 52.381 0.00 0.00 0.00 3.18
1821 2020 0.376152 GGCATCGATCAACACAGCAG 59.624 55.000 0.00 0.00 0.00 4.24
1827 2026 1.959899 GATCAACACAGCAGGCGTCG 61.960 60.000 0.00 0.00 0.00 5.12
1832 2031 4.927782 ACAGCAGGCGTCGGCAAA 62.928 61.111 21.79 0.00 42.47 3.68
1845 2044 4.904154 GCGTCGGCAAAATATTCAGATTAC 59.096 41.667 0.00 0.00 39.62 1.89
1888 2087 6.632834 GTGATTTGTCTGTTATGTGTGTGTTC 59.367 38.462 0.00 0.00 0.00 3.18
1899 2098 0.321210 TGTGTGTTCCCTATGGTGCG 60.321 55.000 0.00 0.00 0.00 5.34
1900 2099 0.321298 GTGTGTTCCCTATGGTGCGT 60.321 55.000 0.00 0.00 0.00 5.24
1902 2101 1.834896 TGTGTTCCCTATGGTGCGTAT 59.165 47.619 0.00 0.00 0.00 3.06
1904 2103 3.181473 TGTGTTCCCTATGGTGCGTATAC 60.181 47.826 0.00 0.00 0.00 1.47
1905 2104 3.069158 GTGTTCCCTATGGTGCGTATACT 59.931 47.826 0.56 0.00 0.00 2.12
1907 2106 4.894705 TGTTCCCTATGGTGCGTATACTAA 59.105 41.667 0.56 0.00 0.00 2.24
1909 2108 6.127111 TGTTCCCTATGGTGCGTATACTAAAA 60.127 38.462 0.56 0.00 0.00 1.52
1910 2109 6.675413 TCCCTATGGTGCGTATACTAAAAT 57.325 37.500 0.56 0.00 0.00 1.82
1948 2147 8.810652 AGTATTTGTTGCAACGAAATTTATGT 57.189 26.923 30.79 17.59 36.00 2.29
1953 2152 7.706281 TGTTGCAACGAAATTTATGTCAAAT 57.294 28.000 23.79 0.00 0.00 2.32
1972 2171 9.491675 TGTCAAATTATAGTCAAAAGTACGGAA 57.508 29.630 0.00 0.00 0.00 4.30
1982 2181 7.882179 AGTCAAAAGTACGGAATTGCTAAAAT 58.118 30.769 0.00 0.00 0.00 1.82
1983 2182 7.807907 AGTCAAAAGTACGGAATTGCTAAAATG 59.192 33.333 0.00 0.00 0.00 2.32
1987 2186 2.879826 ACGGAATTGCTAAAATGCTGC 58.120 42.857 0.00 0.00 0.00 5.25
2004 2203 3.636300 TGCTGCCGCCTGAATATTTTAAT 59.364 39.130 0.00 0.00 34.43 1.40
2013 2212 9.919348 CCGCCTGAATATTTTAATTTTTCATTG 57.081 29.630 0.00 0.00 0.00 2.82
2113 2314 0.179045 AAGAAGGCACGCAGAACTGT 60.179 50.000 3.77 0.00 0.00 3.55
2132 2333 2.760650 TGTCGTGGAGCATAATCTCAGT 59.239 45.455 0.00 0.00 34.84 3.41
2166 2367 2.139917 CCAAACTGATCCGACGAACAA 58.860 47.619 0.00 0.00 0.00 2.83
2178 2380 1.133407 GACGAACAACAAAACAGCCCA 59.867 47.619 0.00 0.00 0.00 5.36
2201 2403 1.317431 ACGTACGCATACAGGGAGCA 61.317 55.000 16.72 0.00 0.00 4.26
2203 2405 0.174845 GTACGCATACAGGGAGCACA 59.825 55.000 0.00 0.00 0.00 4.57
2228 2431 4.245251 AGTCTCTCTTCCCTTCTACTCC 57.755 50.000 0.00 0.00 0.00 3.85
2243 2452 4.264253 TCTACTCCGTGAGTATTTCCGAA 58.736 43.478 12.32 0.00 43.08 4.30
2247 2456 4.181578 CTCCGTGAGTATTTCCGAACAAT 58.818 43.478 0.00 0.00 0.00 2.71
2249 2458 5.722263 TCCGTGAGTATTTCCGAACAATAA 58.278 37.500 0.00 0.00 0.00 1.40
2282 2491 6.149474 GCAGAAAGGAAAAACAGAGCATAGTA 59.851 38.462 0.00 0.00 0.00 1.82
2371 2617 0.030235 TGACTTGTCACCGTCTCGTG 59.970 55.000 0.00 0.00 34.93 4.35
2378 2624 3.063084 ACCGTCTCGTGGCTCTCC 61.063 66.667 0.00 0.00 0.00 3.71
2419 2665 1.212751 GACCACAAGCAAATCGCCC 59.787 57.895 0.00 0.00 44.04 6.13
2430 2676 1.201414 CAAATCGCCCGCCTAAAGTTT 59.799 47.619 0.00 0.00 0.00 2.66
2468 2714 4.396166 CCTGAAACACACACAAAGAGAACT 59.604 41.667 0.00 0.00 0.00 3.01
2507 2753 2.359900 CCACCTTGGCTGCTACTAAAG 58.640 52.381 0.00 0.00 0.00 1.85
2551 2797 7.666623 TCAACACACAGTCAGAGATACAATTA 58.333 34.615 0.00 0.00 0.00 1.40
2611 2857 0.109153 TGGAGCATGCAACTCACAGT 59.891 50.000 21.98 0.00 35.79 3.55
2638 2884 3.869246 CAGACGGATTACTACGCCATTTT 59.131 43.478 0.00 0.00 0.00 1.82
2668 2914 3.976306 GCCAAAATGCAAATGCTTGTTTC 59.024 39.130 6.97 0.00 42.66 2.78
2695 2941 9.007901 AGAGGATTTCTAAATTTCTGAACACAG 57.992 33.333 0.00 0.00 33.23 3.66
2701 2947 7.750229 TCTAAATTTCTGAACACAGCAATCT 57.250 32.000 0.00 0.00 29.32 2.40
2717 2963 2.364970 CAATCTTGGAGCCACACCAAAA 59.635 45.455 0.00 0.00 45.05 2.44
2727 2973 5.221441 GGAGCCACACCAAAAACTTCTTAAT 60.221 40.000 0.00 0.00 0.00 1.40
2788 3035 4.811024 TCGGCATCAATGTCTTCAATACTC 59.189 41.667 0.00 0.00 0.00 2.59
2789 3036 4.813161 CGGCATCAATGTCTTCAATACTCT 59.187 41.667 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.646240 GTGCATCCAATGACATACTTTTTGTT 59.354 34.615 0.00 0.00 0.00 2.83
18 19 5.725325 TCTTTCAAATGTGCATCCAATGA 57.275 34.783 0.00 0.00 0.00 2.57
74 75 2.744202 AGTGCGCTATCTTTTTCACTGG 59.256 45.455 9.73 0.00 34.00 4.00
75 76 5.725110 ATAGTGCGCTATCTTTTTCACTG 57.275 39.130 14.10 0.00 36.37 3.66
76 77 5.463724 GCTATAGTGCGCTATCTTTTTCACT 59.536 40.000 22.65 1.47 38.71 3.41
77 78 5.671074 GCTATAGTGCGCTATCTTTTTCAC 58.329 41.667 22.65 2.33 38.71 3.18
78 79 5.907197 GCTATAGTGCGCTATCTTTTTCA 57.093 39.130 22.65 3.45 38.71 2.69
91 92 2.847133 GCTATTAGCGACGCTATAGTGC 59.153 50.000 28.67 23.61 41.01 4.40
92 93 4.079665 TGCTATTAGCGACGCTATAGTG 57.920 45.455 28.67 19.03 46.26 2.74
93 94 4.156190 ACATGCTATTAGCGACGCTATAGT 59.844 41.667 28.67 19.42 46.26 2.12
94 95 4.663166 ACATGCTATTAGCGACGCTATAG 58.337 43.478 28.67 26.76 46.26 1.31
95 96 4.696899 ACATGCTATTAGCGACGCTATA 57.303 40.909 28.67 19.32 46.26 1.31
96 97 3.577649 ACATGCTATTAGCGACGCTAT 57.422 42.857 28.67 19.98 46.26 2.97
97 98 3.364889 AACATGCTATTAGCGACGCTA 57.635 42.857 25.04 25.04 46.26 4.26
98 99 2.225068 AACATGCTATTAGCGACGCT 57.775 45.000 27.45 27.45 46.26 5.07
99 100 4.259451 GCTATAACATGCTATTAGCGACGC 60.259 45.833 13.03 13.03 46.26 5.19
100 101 5.362987 GCTATAACATGCTATTAGCGACG 57.637 43.478 10.94 4.54 46.26 5.12
104 105 6.586463 TCAGAACGCTATAACATGCTATTAGC 59.414 38.462 8.80 8.80 42.82 3.09
105 106 7.201393 GCTCAGAACGCTATAACATGCTATTAG 60.201 40.741 0.00 0.00 0.00 1.73
106 107 6.586463 GCTCAGAACGCTATAACATGCTATTA 59.414 38.462 0.00 0.00 0.00 0.98
107 108 5.406780 GCTCAGAACGCTATAACATGCTATT 59.593 40.000 0.00 0.00 0.00 1.73
108 109 4.926238 GCTCAGAACGCTATAACATGCTAT 59.074 41.667 0.00 0.00 0.00 2.97
109 110 4.202111 TGCTCAGAACGCTATAACATGCTA 60.202 41.667 0.00 0.00 0.00 3.49
110 111 3.126831 GCTCAGAACGCTATAACATGCT 58.873 45.455 0.00 0.00 0.00 3.79
111 112 2.866156 TGCTCAGAACGCTATAACATGC 59.134 45.455 0.00 0.00 0.00 4.06
112 113 5.007039 ACATTGCTCAGAACGCTATAACATG 59.993 40.000 0.00 0.00 0.00 3.21
113 114 5.118990 ACATTGCTCAGAACGCTATAACAT 58.881 37.500 0.00 0.00 0.00 2.71
114 115 4.503910 ACATTGCTCAGAACGCTATAACA 58.496 39.130 0.00 0.00 0.00 2.41
115 116 4.806247 AGACATTGCTCAGAACGCTATAAC 59.194 41.667 0.00 0.00 0.00 1.89
116 117 5.011090 AGACATTGCTCAGAACGCTATAA 57.989 39.130 0.00 0.00 0.00 0.98
117 118 4.097892 TGAGACATTGCTCAGAACGCTATA 59.902 41.667 6.68 0.00 39.84 1.31
118 119 3.118992 TGAGACATTGCTCAGAACGCTAT 60.119 43.478 6.68 0.00 39.84 2.97
119 120 2.231235 TGAGACATTGCTCAGAACGCTA 59.769 45.455 6.68 0.00 39.84 4.26
120 121 1.001293 TGAGACATTGCTCAGAACGCT 59.999 47.619 6.68 0.00 39.84 5.07
121 122 1.127582 GTGAGACATTGCTCAGAACGC 59.872 52.381 9.95 0.00 44.92 4.84
122 123 2.681706 AGTGAGACATTGCTCAGAACG 58.318 47.619 9.95 0.00 44.92 3.95
123 124 6.734104 ATTTAGTGAGACATTGCTCAGAAC 57.266 37.500 9.95 1.95 44.92 3.01
124 125 8.846943 TTAATTTAGTGAGACATTGCTCAGAA 57.153 30.769 9.95 6.30 44.92 3.02
125 126 9.102757 GATTAATTTAGTGAGACATTGCTCAGA 57.897 33.333 9.95 1.72 44.92 3.27
126 127 8.060679 CGATTAATTTAGTGAGACATTGCTCAG 58.939 37.037 9.95 0.00 44.92 3.35
127 128 7.763985 TCGATTAATTTAGTGAGACATTGCTCA 59.236 33.333 6.68 6.68 42.31 4.26
128 129 8.131455 TCGATTAATTTAGTGAGACATTGCTC 57.869 34.615 0.00 0.00 35.46 4.26
129 130 8.554528 CATCGATTAATTTAGTGAGACATTGCT 58.445 33.333 0.00 0.00 0.00 3.91
130 131 8.338259 ACATCGATTAATTTAGTGAGACATTGC 58.662 33.333 0.00 0.00 0.00 3.56
134 135 9.863845 TTGTACATCGATTAATTTAGTGAGACA 57.136 29.630 0.00 0.00 0.00 3.41
141 142 9.580916 CGGAACATTGTACATCGATTAATTTAG 57.419 33.333 0.00 0.00 0.00 1.85
142 143 8.065407 GCGGAACATTGTACATCGATTAATTTA 58.935 33.333 0.00 0.00 0.00 1.40
143 144 6.910433 GCGGAACATTGTACATCGATTAATTT 59.090 34.615 0.00 0.00 0.00 1.82
144 145 6.260050 AGCGGAACATTGTACATCGATTAATT 59.740 34.615 0.00 0.00 0.00 1.40
145 146 5.758296 AGCGGAACATTGTACATCGATTAAT 59.242 36.000 0.00 0.00 0.00 1.40
146 147 5.113383 AGCGGAACATTGTACATCGATTAA 58.887 37.500 0.00 0.00 0.00 1.40
147 148 4.689071 AGCGGAACATTGTACATCGATTA 58.311 39.130 0.00 0.00 0.00 1.75
148 149 3.531538 AGCGGAACATTGTACATCGATT 58.468 40.909 0.00 0.00 0.00 3.34
149 150 3.179443 AGCGGAACATTGTACATCGAT 57.821 42.857 0.00 0.00 0.00 3.59
150 151 2.665649 AGCGGAACATTGTACATCGA 57.334 45.000 0.00 0.00 0.00 3.59
151 152 5.388475 GCTATTAGCGGAACATTGTACATCG 60.388 44.000 0.00 0.00 0.00 3.84
152 153 5.465390 TGCTATTAGCGGAACATTGTACATC 59.535 40.000 10.94 0.00 46.26 3.06
153 154 5.364778 TGCTATTAGCGGAACATTGTACAT 58.635 37.500 10.94 0.00 46.26 2.29
154 155 4.760878 TGCTATTAGCGGAACATTGTACA 58.239 39.130 10.94 0.00 46.26 2.90
155 156 5.236478 ACATGCTATTAGCGGAACATTGTAC 59.764 40.000 10.94 0.00 46.26 2.90
156 157 5.364778 ACATGCTATTAGCGGAACATTGTA 58.635 37.500 10.94 0.00 46.26 2.41
157 158 4.199310 ACATGCTATTAGCGGAACATTGT 58.801 39.130 10.94 3.70 46.26 2.71
158 159 4.818534 ACATGCTATTAGCGGAACATTG 57.181 40.909 10.94 3.18 46.26 2.82
159 160 7.878127 ACTATAACATGCTATTAGCGGAACATT 59.122 33.333 10.94 2.85 46.26 2.71
160 161 7.331934 CACTATAACATGCTATTAGCGGAACAT 59.668 37.037 10.94 4.62 46.26 2.71
161 162 6.645003 CACTATAACATGCTATTAGCGGAACA 59.355 38.462 10.94 0.00 46.26 3.18
162 163 6.401153 GCACTATAACATGCTATTAGCGGAAC 60.401 42.308 10.94 0.00 46.26 3.62
163 164 5.637810 GCACTATAACATGCTATTAGCGGAA 59.362 40.000 10.94 0.00 46.26 4.30
164 165 5.168569 GCACTATAACATGCTATTAGCGGA 58.831 41.667 10.94 0.00 46.26 5.54
165 166 4.031765 CGCACTATAACATGCTATTAGCGG 59.968 45.833 10.94 8.16 46.26 5.52
166 167 4.857037 TCGCACTATAACATGCTATTAGCG 59.143 41.667 16.61 16.61 46.26 4.26
167 168 6.893958 ATCGCACTATAACATGCTATTAGC 57.106 37.500 8.80 8.80 42.82 3.09
169 170 9.678941 GCTATATCGCACTATAACATGCTATTA 57.321 33.333 0.00 0.00 39.79 0.98
170 171 8.197439 TGCTATATCGCACTATAACATGCTATT 58.803 33.333 0.00 0.00 39.79 1.73
171 172 7.716612 TGCTATATCGCACTATAACATGCTAT 58.283 34.615 0.00 0.00 39.79 2.97
172 173 7.095695 TGCTATATCGCACTATAACATGCTA 57.904 36.000 0.00 0.00 39.79 3.49
173 174 5.965922 TGCTATATCGCACTATAACATGCT 58.034 37.500 0.00 0.00 39.79 3.79
186 187 3.435566 TGCTATTAGCGTGCTATATCGC 58.564 45.455 10.94 7.67 46.26 4.58
187 188 7.301789 AGATATGCTATTAGCGTGCTATATCG 58.698 38.462 18.61 0.00 46.26 2.92
190 191 9.952188 CTTAAGATATGCTATTAGCGTGCTATA 57.048 33.333 18.61 7.66 46.26 1.31
191 192 8.687242 TCTTAAGATATGCTATTAGCGTGCTAT 58.313 33.333 18.61 6.08 46.26 2.97
192 193 8.051901 TCTTAAGATATGCTATTAGCGTGCTA 57.948 34.615 18.61 0.00 46.26 3.49
193 194 6.925211 TCTTAAGATATGCTATTAGCGTGCT 58.075 36.000 18.61 13.02 46.26 4.40
194 195 7.008810 GTCTCTTAAGATATGCTATTAGCGTGC 59.991 40.741 18.61 11.25 41.27 5.34
195 196 8.023706 TGTCTCTTAAGATATGCTATTAGCGTG 58.976 37.037 18.61 2.44 41.27 5.34
196 197 8.024285 GTGTCTCTTAAGATATGCTATTAGCGT 58.976 37.037 14.53 14.53 43.91 5.07
197 198 8.023706 TGTGTCTCTTAAGATATGCTATTAGCG 58.976 37.037 5.44 0.00 37.74 4.26
198 199 9.868277 ATGTGTCTCTTAAGATATGCTATTAGC 57.132 33.333 5.44 8.80 36.32 3.09
213 214 9.665719 TGCTATGACAAAATAATGTGTCTCTTA 57.334 29.630 2.81 0.00 43.73 2.10
214 215 8.565896 TGCTATGACAAAATAATGTGTCTCTT 57.434 30.769 2.81 0.00 43.73 2.85
215 216 8.618677 CATGCTATGACAAAATAATGTGTCTCT 58.381 33.333 2.81 0.00 43.73 3.10
216 217 7.377928 GCATGCTATGACAAAATAATGTGTCTC 59.622 37.037 11.37 0.00 43.73 3.36
217 218 7.067859 AGCATGCTATGACAAAATAATGTGTCT 59.932 33.333 21.21 0.00 43.73 3.41
218 219 7.198390 AGCATGCTATGACAAAATAATGTGTC 58.802 34.615 21.21 0.00 43.66 3.67
219 220 7.104043 AGCATGCTATGACAAAATAATGTGT 57.896 32.000 21.21 0.00 32.57 3.72
220 221 9.687210 AATAGCATGCTATGACAAAATAATGTG 57.313 29.630 34.88 0.00 39.03 3.21
281 282 9.329913 CGTATCAAACTGGAACTTCTTATTTTG 57.670 33.333 0.00 0.00 0.00 2.44
305 306 2.232696 ACAAGGCCACTTTGTTTTTCGT 59.767 40.909 5.01 0.00 33.81 3.85
306 307 2.887337 ACAAGGCCACTTTGTTTTTCG 58.113 42.857 5.01 0.00 33.81 3.46
321 322 4.137543 GCCCTCCATTTCTGTATACAAGG 58.862 47.826 7.06 8.57 0.00 3.61
427 430 4.443725 GCGGCTATGATTCATCGATCTATG 59.556 45.833 1.55 0.77 0.00 2.23
428 431 4.340666 AGCGGCTATGATTCATCGATCTAT 59.659 41.667 0.00 0.00 0.00 1.98
434 437 2.360553 AGAGCGGCTATGATTCATCG 57.639 50.000 0.60 2.27 0.00 3.84
439 442 6.699575 AATTTTGTAAGAGCGGCTATGATT 57.300 33.333 0.60 0.00 0.00 2.57
520 529 8.258007 TGACATAGAAAGTAGATCGTGGATTTT 58.742 33.333 0.00 0.00 0.00 1.82
522 531 7.348080 TGACATAGAAAGTAGATCGTGGATT 57.652 36.000 0.00 0.00 0.00 3.01
537 546 2.421073 GCATGCTGTTGCTGACATAGAA 59.579 45.455 11.37 0.00 39.57 2.10
538 547 2.011947 GCATGCTGTTGCTGACATAGA 58.988 47.619 11.37 0.00 39.57 1.98
541 550 1.888018 GGCATGCTGTTGCTGACAT 59.112 52.632 18.92 0.00 42.38 3.06
542 551 3.357919 GGCATGCTGTTGCTGACA 58.642 55.556 18.92 0.00 42.38 3.58
546 555 0.961857 TTGATCGGCATGCTGTTGCT 60.962 50.000 25.42 9.55 42.38 3.91
547 556 0.524816 CTTGATCGGCATGCTGTTGC 60.525 55.000 25.42 15.83 42.01 4.17
548 557 1.089112 TCTTGATCGGCATGCTGTTG 58.911 50.000 25.42 12.20 0.00 3.33
549 558 1.825090 TTCTTGATCGGCATGCTGTT 58.175 45.000 25.42 17.96 0.00 3.16
550 559 1.470098 GTTTCTTGATCGGCATGCTGT 59.530 47.619 25.42 13.32 0.00 4.40
551 560 1.741706 AGTTTCTTGATCGGCATGCTG 59.258 47.619 21.02 21.02 0.00 4.41
552 561 2.119801 AGTTTCTTGATCGGCATGCT 57.880 45.000 18.92 0.00 0.00 3.79
553 562 2.919229 CAAAGTTTCTTGATCGGCATGC 59.081 45.455 9.90 9.90 0.00 4.06
554 563 4.083110 AGTCAAAGTTTCTTGATCGGCATG 60.083 41.667 0.00 0.00 37.63 4.06
555 564 4.074970 AGTCAAAGTTTCTTGATCGGCAT 58.925 39.130 0.00 0.00 37.63 4.40
556 565 3.476552 AGTCAAAGTTTCTTGATCGGCA 58.523 40.909 0.00 0.00 37.63 5.69
557 566 4.467735 GAAGTCAAAGTTTCTTGATCGGC 58.532 43.478 0.00 0.00 37.63 5.54
560 569 5.924475 TCCGAAGTCAAAGTTTCTTGATC 57.076 39.130 0.00 0.00 37.63 2.92
561 570 5.335191 GCATCCGAAGTCAAAGTTTCTTGAT 60.335 40.000 0.00 0.00 37.63 2.57
562 571 4.024048 GCATCCGAAGTCAAAGTTTCTTGA 60.024 41.667 0.00 0.00 32.89 3.02
563 572 4.222114 GCATCCGAAGTCAAAGTTTCTTG 58.778 43.478 0.00 0.00 0.00 3.02
564 573 3.253432 GGCATCCGAAGTCAAAGTTTCTT 59.747 43.478 0.00 0.00 0.00 2.52
567 576 2.582052 TGGCATCCGAAGTCAAAGTTT 58.418 42.857 0.00 0.00 0.00 2.66
569 578 2.489329 CAATGGCATCCGAAGTCAAAGT 59.511 45.455 0.00 0.00 0.00 2.66
570 579 2.733227 GCAATGGCATCCGAAGTCAAAG 60.733 50.000 0.00 0.00 40.72 2.77
573 582 0.035152 AGCAATGGCATCCGAAGTCA 60.035 50.000 0.00 0.00 44.61 3.41
617 814 8.334632 TGACATGCGTATCAATTAATGTTGTAG 58.665 33.333 0.00 0.00 0.00 2.74
621 818 8.026026 TGTTTGACATGCGTATCAATTAATGTT 58.974 29.630 0.00 0.00 34.87 2.71
624 821 8.978564 TTTGTTTGACATGCGTATCAATTAAT 57.021 26.923 0.00 0.00 34.87 1.40
635 832 2.223456 TGGTGACTTTGTTTGACATGCG 60.223 45.455 0.00 0.00 0.00 4.73
682 879 0.036010 AGTGGGCAGATCAAACGGAG 60.036 55.000 0.00 0.00 0.00 4.63
683 880 0.321564 CAGTGGGCAGATCAAACGGA 60.322 55.000 0.00 0.00 0.00 4.69
684 881 1.926511 GCAGTGGGCAGATCAAACGG 61.927 60.000 0.00 0.00 43.97 4.44
685 882 1.503542 GCAGTGGGCAGATCAAACG 59.496 57.895 0.00 0.00 43.97 3.60
711 908 9.720769 CCGATTTGGTTTACCTAGACAATATAT 57.279 33.333 0.00 0.00 36.82 0.86
736 933 1.072159 AGCTGCAGGTCAGACAACC 59.928 57.895 13.85 0.00 45.72 3.77
771 968 2.930950 TCATTGAAATCGGGGTGATCC 58.069 47.619 0.00 0.00 35.84 3.36
826 1023 5.931146 AGTCAGCTGTCTTATCAGTCAAAAG 59.069 40.000 14.67 0.00 37.70 2.27
845 1044 9.567848 TTCTTTTTGTTAGTTTTGCTTAGTCAG 57.432 29.630 0.00 0.00 0.00 3.51
861 1060 6.420604 CGGACTAACATGCAATTCTTTTTGTT 59.579 34.615 0.00 0.00 0.00 2.83
862 1061 5.920273 CGGACTAACATGCAATTCTTTTTGT 59.080 36.000 0.00 0.00 0.00 2.83
863 1062 6.148948 TCGGACTAACATGCAATTCTTTTTG 58.851 36.000 0.00 0.00 0.00 2.44
864 1063 6.325919 TCGGACTAACATGCAATTCTTTTT 57.674 33.333 0.00 0.00 0.00 1.94
865 1064 5.957842 TCGGACTAACATGCAATTCTTTT 57.042 34.783 0.00 0.00 0.00 2.27
866 1065 5.882557 AGATCGGACTAACATGCAATTCTTT 59.117 36.000 0.00 0.00 0.00 2.52
867 1066 5.431765 AGATCGGACTAACATGCAATTCTT 58.568 37.500 0.00 0.00 0.00 2.52
868 1067 5.028549 AGATCGGACTAACATGCAATTCT 57.971 39.130 0.00 0.00 0.00 2.40
869 1068 5.741388 AAGATCGGACTAACATGCAATTC 57.259 39.130 0.00 0.00 0.00 2.17
870 1069 7.807977 ATAAAGATCGGACTAACATGCAATT 57.192 32.000 0.00 0.00 0.00 2.32
871 1070 7.255242 CCAATAAAGATCGGACTAACATGCAAT 60.255 37.037 0.00 0.00 0.00 3.56
872 1071 6.038161 CCAATAAAGATCGGACTAACATGCAA 59.962 38.462 0.00 0.00 0.00 4.08
873 1072 5.527214 CCAATAAAGATCGGACTAACATGCA 59.473 40.000 0.00 0.00 0.00 3.96
874 1073 5.758296 TCCAATAAAGATCGGACTAACATGC 59.242 40.000 0.00 0.00 0.00 4.06
875 1074 7.210174 TCTCCAATAAAGATCGGACTAACATG 58.790 38.462 0.00 0.00 0.00 3.21
876 1075 7.361457 TCTCCAATAAAGATCGGACTAACAT 57.639 36.000 0.00 0.00 0.00 2.71
877 1076 6.785337 TCTCCAATAAAGATCGGACTAACA 57.215 37.500 0.00 0.00 0.00 2.41
878 1077 7.876896 GATCTCCAATAAAGATCGGACTAAC 57.123 40.000 0.00 0.00 39.69 2.34
886 1085 6.294473 TGCCTCTTGATCTCCAATAAAGATC 58.706 40.000 6.24 6.24 46.16 2.75
887 1086 6.257994 TGCCTCTTGATCTCCAATAAAGAT 57.742 37.500 0.00 0.00 36.19 2.40
888 1087 5.698741 TGCCTCTTGATCTCCAATAAAGA 57.301 39.130 0.00 0.00 33.68 2.52
889 1088 6.060136 TGATGCCTCTTGATCTCCAATAAAG 58.940 40.000 0.00 0.00 33.68 1.85
890 1089 6.005066 TGATGCCTCTTGATCTCCAATAAA 57.995 37.500 0.00 0.00 33.68 1.40
891 1090 5.618236 CTGATGCCTCTTGATCTCCAATAA 58.382 41.667 0.00 0.00 33.68 1.40
892 1091 4.504514 GCTGATGCCTCTTGATCTCCAATA 60.505 45.833 0.00 0.00 33.68 1.90
893 1092 3.748027 GCTGATGCCTCTTGATCTCCAAT 60.748 47.826 0.00 0.00 33.68 3.16
894 1093 2.421107 GCTGATGCCTCTTGATCTCCAA 60.421 50.000 0.00 0.00 0.00 3.53
895 1094 1.140452 GCTGATGCCTCTTGATCTCCA 59.860 52.381 0.00 0.00 0.00 3.86
896 1095 1.140452 TGCTGATGCCTCTTGATCTCC 59.860 52.381 0.00 0.00 38.71 3.71
897 1096 2.211806 GTGCTGATGCCTCTTGATCTC 58.788 52.381 0.00 0.00 38.71 2.75
898 1097 1.134159 GGTGCTGATGCCTCTTGATCT 60.134 52.381 0.00 0.00 38.71 2.75
899 1098 1.307097 GGTGCTGATGCCTCTTGATC 58.693 55.000 0.00 0.00 38.71 2.92
900 1099 0.622136 TGGTGCTGATGCCTCTTGAT 59.378 50.000 0.00 0.00 38.71 2.57
901 1100 0.622136 ATGGTGCTGATGCCTCTTGA 59.378 50.000 0.00 0.00 38.71 3.02
902 1101 1.471119 AATGGTGCTGATGCCTCTTG 58.529 50.000 0.00 0.00 38.71 3.02
903 1102 1.822990 CAAATGGTGCTGATGCCTCTT 59.177 47.619 0.00 0.00 38.71 2.85
904 1103 1.471119 CAAATGGTGCTGATGCCTCT 58.529 50.000 0.00 0.00 38.71 3.69
905 1104 0.458669 CCAAATGGTGCTGATGCCTC 59.541 55.000 0.00 0.00 38.71 4.70
906 1105 0.040058 TCCAAATGGTGCTGATGCCT 59.960 50.000 0.00 0.00 38.71 4.75
907 1106 1.068127 GATCCAAATGGTGCTGATGCC 59.932 52.381 0.00 0.00 38.71 4.40
908 1107 1.752498 TGATCCAAATGGTGCTGATGC 59.248 47.619 0.00 0.00 40.20 3.91
909 1108 4.098807 TGATTGATCCAAATGGTGCTGATG 59.901 41.667 0.00 0.00 36.34 3.07
910 1109 4.283337 TGATTGATCCAAATGGTGCTGAT 58.717 39.130 0.00 0.00 36.34 2.90
911 1110 3.697542 CTGATTGATCCAAATGGTGCTGA 59.302 43.478 0.00 0.00 36.34 4.26
912 1111 3.446161 ACTGATTGATCCAAATGGTGCTG 59.554 43.478 0.00 0.00 36.34 4.41
913 1112 3.705051 ACTGATTGATCCAAATGGTGCT 58.295 40.909 0.00 0.00 36.34 4.40
914 1113 4.427312 GAACTGATTGATCCAAATGGTGC 58.573 43.478 0.00 0.00 36.34 5.01
915 1114 4.142093 GGGAACTGATTGATCCAAATGGTG 60.142 45.833 0.00 0.00 39.15 4.17
939 1138 4.496360 TGTCGACATTTATAGCGGTGAAA 58.504 39.130 15.76 0.00 0.00 2.69
942 1141 3.428870 GGATGTCGACATTTATAGCGGTG 59.571 47.826 30.46 0.00 36.57 4.94
946 1145 4.752101 AGCTTGGATGTCGACATTTATAGC 59.248 41.667 30.46 29.53 36.57 2.97
955 1154 4.217754 CTAGACTAGCTTGGATGTCGAC 57.782 50.000 9.11 9.11 34.92 4.20
970 1169 1.538876 TTGCCAGGGGTGCTAGACT 60.539 57.895 0.00 0.00 0.00 3.24
982 1181 1.027357 ATTGCCGATAAGCTTGCCAG 58.973 50.000 9.86 0.00 0.00 4.85
983 1182 0.740149 CATTGCCGATAAGCTTGCCA 59.260 50.000 9.86 0.00 0.00 4.92
984 1183 0.031178 CCATTGCCGATAAGCTTGCC 59.969 55.000 9.86 0.00 0.00 4.52
1074 1273 1.815421 CTCGAATGGGACGCCCTTG 60.815 63.158 14.76 1.83 45.70 3.61
1188 1387 4.358810 AGGGACTCTAAGACGGCC 57.641 61.111 0.00 0.00 0.00 6.13
1317 1516 5.942826 GGGACTTCAACTTGAGAAGAATCAT 59.057 40.000 9.65 0.00 44.00 2.45
1320 1519 5.072329 TGAGGGACTTCAACTTGAGAAGAAT 59.928 40.000 9.65 0.00 44.00 2.40
1334 1533 9.103861 CAGTATCTAAAGAAATTGAGGGACTTC 57.896 37.037 0.00 0.00 41.55 3.01
1344 1543 8.893727 GCCATGTACACAGTATCTAAAGAAATT 58.106 33.333 0.00 0.00 0.00 1.82
1345 1544 7.499232 GGCCATGTACACAGTATCTAAAGAAAT 59.501 37.037 0.00 0.00 0.00 2.17
1356 1555 1.219664 GCCGGCCATGTACACAGTA 59.780 57.895 18.11 0.00 0.00 2.74
1417 1616 2.514824 GCCATCCAGAACGGCCTC 60.515 66.667 0.00 0.00 40.07 4.70
1460 1659 3.771160 CCTCACGAACCCCTCCCG 61.771 72.222 0.00 0.00 0.00 5.14
1540 1739 4.060038 AGGTACCCAACGGCGTCG 62.060 66.667 15.17 8.42 43.02 5.12
1821 2020 1.668751 TCTGAATATTTTGCCGACGCC 59.331 47.619 0.00 0.00 0.00 5.68
1827 2026 7.916552 ACAGTACGTAATCTGAATATTTTGCC 58.083 34.615 17.37 0.00 35.84 4.52
1856 2055 8.579006 ACACATAACAGACAAATCACAAATCAT 58.421 29.630 0.00 0.00 0.00 2.45
1857 2056 7.861872 CACACATAACAGACAAATCACAAATCA 59.138 33.333 0.00 0.00 0.00 2.57
1858 2057 7.862372 ACACACATAACAGACAAATCACAAATC 59.138 33.333 0.00 0.00 0.00 2.17
1859 2058 7.648908 CACACACATAACAGACAAATCACAAAT 59.351 33.333 0.00 0.00 0.00 2.32
1860 2059 6.971756 CACACACATAACAGACAAATCACAAA 59.028 34.615 0.00 0.00 0.00 2.83
1861 2060 6.094742 ACACACACATAACAGACAAATCACAA 59.905 34.615 0.00 0.00 0.00 3.33
1862 2061 5.588246 ACACACACATAACAGACAAATCACA 59.412 36.000 0.00 0.00 0.00 3.58
1863 2062 6.060028 ACACACACATAACAGACAAATCAC 57.940 37.500 0.00 0.00 0.00 3.06
1878 2077 1.544537 GCACCATAGGGAACACACACA 60.545 52.381 0.00 0.00 38.05 3.72
1888 2087 8.836268 TTTATTTTAGTATACGCACCATAGGG 57.164 34.615 0.00 0.00 41.29 3.53
1953 2152 9.656040 TTAGCAATTCCGTACTTTTGACTATAA 57.344 29.630 0.00 0.00 0.00 0.98
1957 2156 6.870971 TTTAGCAATTCCGTACTTTTGACT 57.129 33.333 0.00 0.00 0.00 3.41
1964 2163 4.438744 GCAGCATTTTAGCAATTCCGTACT 60.439 41.667 0.00 0.00 36.85 2.73
1965 2164 3.791353 GCAGCATTTTAGCAATTCCGTAC 59.209 43.478 0.00 0.00 36.85 3.67
1966 2165 3.181491 GGCAGCATTTTAGCAATTCCGTA 60.181 43.478 0.00 0.00 36.85 4.02
1967 2166 2.417243 GGCAGCATTTTAGCAATTCCGT 60.417 45.455 0.00 0.00 36.85 4.69
1968 2167 2.195922 GGCAGCATTTTAGCAATTCCG 58.804 47.619 0.00 0.00 36.85 4.30
1969 2168 2.195922 CGGCAGCATTTTAGCAATTCC 58.804 47.619 0.00 0.00 36.85 3.01
1970 2169 1.589779 GCGGCAGCATTTTAGCAATTC 59.410 47.619 3.18 0.00 44.35 2.17
1972 2171 3.350766 GCGGCAGCATTTTAGCAAT 57.649 47.368 3.18 0.00 44.35 3.56
1983 2182 3.708563 TTAAAATATTCAGGCGGCAGC 57.291 42.857 13.08 0.00 44.18 5.25
1987 2186 9.919348 CAATGAAAAATTAAAATATTCAGGCGG 57.081 29.630 8.75 0.00 33.91 6.13
2062 2262 2.809601 CGCGTCCCAGAACGAAGG 60.810 66.667 0.00 0.00 45.37 3.46
2113 2314 3.023832 TGACTGAGATTATGCTCCACGA 58.976 45.455 0.00 0.00 33.95 4.35
2132 2333 7.050377 GGATCAGTTTGGTGAGATAAGAATGA 58.950 38.462 0.00 0.00 0.00 2.57
2166 2367 0.467290 ACGTGGATGGGCTGTTTTGT 60.467 50.000 0.00 0.00 0.00 2.83
2178 2380 0.387929 CCCTGTATGCGTACGTGGAT 59.612 55.000 22.13 9.21 33.36 3.41
2201 2403 2.407340 AGGGAAGAGAGACTTGGTGT 57.593 50.000 0.00 0.00 39.13 4.16
2203 2405 3.268034 AGAAGGGAAGAGAGACTTGGT 57.732 47.619 0.00 0.00 39.13 3.67
2228 2431 6.091713 AGGTTTATTGTTCGGAAATACTCACG 59.908 38.462 0.00 0.00 0.00 4.35
2243 2452 3.502211 CCTTTCTGCGTCAGGTTTATTGT 59.498 43.478 6.95 0.00 31.51 2.71
2247 2456 3.478857 TTCCTTTCTGCGTCAGGTTTA 57.521 42.857 6.95 0.00 31.51 2.01
2249 2458 2.341846 TTTCCTTTCTGCGTCAGGTT 57.658 45.000 6.95 0.00 31.51 3.50
2305 2551 3.097728 GCAGTGTGTCGTCGGACG 61.098 66.667 23.73 23.73 46.49 4.79
2371 2617 2.045536 CCCTTGCTGTGGAGAGCC 60.046 66.667 0.00 0.00 38.28 4.70
2378 2624 1.035139 AGTTTTGCTCCCTTGCTGTG 58.965 50.000 0.00 0.00 0.00 3.66
2381 2627 1.322442 GTCAGTTTTGCTCCCTTGCT 58.678 50.000 0.00 0.00 0.00 3.91
2419 2665 3.495001 GCTCATAGGCTAAACTTTAGGCG 59.505 47.826 22.69 13.06 43.82 5.52
2430 2676 1.793414 TCAGGCTTGCTCATAGGCTA 58.207 50.000 0.00 0.00 45.62 3.93
2468 2714 4.139038 GTGGCTTTGTTTTGTACCTCCTA 58.861 43.478 0.00 0.00 0.00 2.94
2507 2753 7.148188 TGTGTTGATTAAAGAATGAGATGAGCC 60.148 37.037 0.00 0.00 0.00 4.70
2611 2857 2.159476 GCGTAGTAATCCGTCTGTGACA 60.159 50.000 0.00 0.00 32.09 3.58
2638 2884 3.287867 TTTGCATTTTGGCCTTTTGGA 57.712 38.095 3.32 0.00 44.07 3.53
2668 2914 8.786898 TGTGTTCAGAAATTTAGAAATCCTCTG 58.213 33.333 14.92 14.92 38.42 3.35
2695 2941 0.895100 TGGTGTGGCTCCAAGATTGC 60.895 55.000 0.00 0.00 31.50 3.56
2701 2947 1.859302 AGTTTTTGGTGTGGCTCCAA 58.141 45.000 5.56 5.56 42.29 3.53
2727 2973 7.509141 TCATGCAAAGATTTCAAGACAAGTA 57.491 32.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.