>input_sequence_68803
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------------------------------------------------------------------------------AT
GGCGGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCGTTCGTCCACCGCGCCGAGGTGGCCCTGCGCCTCAAGGGCG
TCCCATTCGAGCTCATCCTTGAAGACCTCAACAACAAGAGTGAGCTGCTGCTGAAGCACAACCCCATCCACAAGACGGTG
CCGGTGCTCCTCCATGGTGACCGGCCGGCCGTCTTAGAGTCCCTCCTCATCGTCGAGTATGTGGATGAGGCTTTCGACGG
CCCGCCGCTCCTCCCCGTCGACCCCTACGGGAGGGCCATGGCTCGCTTCTGGGCCCAATTCATCGAGCAAAAGGTATGAT
TCTTCTCAAGTTGAAGTCCCTCAATTTCTTTAGATACTGTGTACATGGCCGGCCATTCATGGCGGATCGACCTTGCGTAT
GTACTTGCAGTGCTCGAGGCCGTTCTGGATGGCGGTGTGGTTGGACGACGGGGAGGCGCGGGAGGGGTTCGTGAGGGACA
CCAAGGAGAATCTGGCGCTGCTGGATGCGCGGCTGCAGGGGAAGCGGTTCTTCGCCGGCGACGCCGTTGGGTACCTGGAC
CTGGCGGCCTGCGGGCTGGCGCACCTGCTGGGCGTGATCGAGGAGGTGGCCGGGGCGAGCATTGTTGGCGCGGGCGAGTT
CCCCGCACTGCGCCGGTGGGCGGAGGACTACACCTCCGACGCGACCGTCGCCGCGTGCCTACCGCGGAGGGAGCAGCTCG
CCGCACACTTCGCCGGGAAGAAGGACCGAATCAAGCTCGCCGTCAGCGCGATGGTGGGGCGGGCGTAG------------
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>chr3D_1_TraesCS3D01G487300
TATGCAACAAAAAGTATGTCATTGGATGCACATTTGAAAGAATTTTCCGATGATATATGTTAGATGTCATATAACCAGTG
AAAAAGATAGCGCACTATAGCGTCGCTAATAGCATGTTATAGCGTTCTGAGCAATGTCTCACTAAATTAATCGATGTACA
ATGTTCCGCTAATAGCATGTTATAGTGCGATATAGCACGCTAATAGCATATCTTAAGAGACACATTATTTTGTCATAGCA
TGCTATTTTTTTTCATTGCATATAACTCATATTTTTTTGACCAAAATAAGAAGTTCCAGTTTGATACGAAAAACAAAGTG
GCCTTGTATACAGAAATGGAGGGCGTATTGTATCACATCAGTATTATAACCTAGAAATAACCATTTCCAGCTGACTGCTG
TTAC--CGGTTAACCGAGAAATAACCATTCATAGATCGATGAATCATAGCCGCTCTTACAAAATTATTCATACTTCTATG
TCAGCAAAT--AAAAAATCCATAGCTAACAAGAAAACG----AAATAAAAAATCCACGATCTACTTTCTATGTCAGCAAC
AGCATGCCGATCAAGAAACTTT----------------------------------------------------------
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--------------------------------------------------GACTTCGGATGCCATTGCTCGCTTGGAAAC
GTACACAATAGTACTACAACATTAATTGATACGCATGTCAAACAAAGTCACCATCGTTTTGCTACATTATATTATCTCCT
CCGTTTGATCTGCCCACTGCATTCTAAATATATTGTCTAGGTAAACCAAATCGGTTGTCTGACCTGCAGCTGCATCAATA
ACAGTGAGGATCACCCCGATTTCAATGATTCTATTGAGACACGAATCTTTTTAATCTTTCTCCTTTTGACTG--ATAAGA
CAGCTGACTAAGCAAAACTAACAAAAAGAATTGCATGTTAGTCCGATCTTTATTGGAGATCAAGAGGCATCAGCACCATT
TGGATCAATCAGTTCCCTTTCACCGCTATAAATGTCGACATCCAAGCTAGTCTAGCACCCCTGGCAAGCTTATCGGCAAT
GGCGGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCGTTCGTCCACCGCGCCGAGGTGGCCCTGCGCCTCAAGGGCG
TCCCATTCGAGCTCATCCTTGAAGACCTCAACAACAAGAGTGAGCTGCTGCTGAAGCACAACCCCATCCACAAGACGGTG
CCGGTGCTCCTCCATGGTGACCGGCCGGCCGTCTTAGAGTCCCTCCTCATCGTCGAGTATGTGGATGAGGCTTTCGACGG
CCCGCCGCTCCTCCCCGTCGACCCCTACGGGAGGGCCATGGCTCGCTTCTGGGCCCAATTCATCGAGCAAAAGGTATGAT
TCTTCTCAAGTTGAAGTCCCTCAATTTCTTTAGATACTGTGTACATGGCCGGCCATTCATGGCGGATCGACCTTGCGTAT
GTACTTGCAGTGCTCGAGGCCGTTCTGGATGGCGGTGTGGTTGGACGACGGGGAGGCGCGGGAGGGGTTCGTGAGGGACA
CCAAGGAGAATCTGGCGCTGCTGGATGCGCGGCTGCAGGGGAAGCGGTTCTTCGCCGGCGACGCCGTTGGGTACCTGGAC
CTGGCGGCCTGCGGGCTGGCGCACCTGCTGGGCGTGATCGAGGAGGTGGCCGGGGCGAGCATTGTTGGCGCGGGCGAGTT
CCCCGCACTGCGCCGGTGGGCGGAGGACTACACCTCCGACGCGACCGTCGCCGCGTGCCTACCGCGGAGGGAGCAGCTCG
CCGCACACTTCGCCGGGAAGAAGGACCGAATCAAGCTCGCCGTCAGCGCGATGGTGGGGCGGGCGTAGTTGTCAGTTTGG
GGCATCGATCAACACAGCAGGCGTCGGCAAAATATTCAGATTACGTACTGTATTATGATTTGTGATTTGTCTGTTATGTG
TGTGTTCCCTATGGTGCGTATACTAAAATAAAATTCATATTAGTATTTGTTGCAACGAAATTTATGTCAAATTATAGTCA
AAAGTACGGAATTGCTAAAATGCTGCCGCCTGAATATTTTAATTTTTCATTGAATTA-TTTTGCAAATAGTTTCATTCAC
TTTATGGTTAGCAGTGTATGCCCTTCGTTCTGGGACGCGGCTCGTCTGCCGTGAAGAAGGCACG-CAGAACTGTCGTGGA
GCATAATCTCAGTCATTCTTATCTCACCAAACTGATCCGACGAACAACAAAACAGCCC-ATCCACGTACGCATACAGGGA
GCACACCAAGTCTCT-CTTCCCTTCTACTCCGTGAGTATTTCC------GAACAATAAACCTGACGCAGAAAGGAAAAAC
AGAGCATAGTAGAA------------------CGTCCGGCG-------------------ACGCCGCGGCCGTCCGACGA
CACACTGCCGCGGCCGTCGGCACTAAGCACTGCACGATGACTTGTCACCGTCTCGTGGCTCTCCACAGCAAGGGAGCAAA
ACTGACGACCACAAGCAAATCGCCCGCCTAAAGTTTAGCCTATGAGCAAGCCTGAAACACACACAAAGAGAACTAGGAGG
TACAAAACAAAGCCACCTTGGCTGCTACTAAAGGCTCATCTCATTCTTTAATCAACACACAGTCAGAGATACAATTATTA
ATCAAGAAATGTCAAAGTGTTGATGCAAATTTAGCACTGGAGCATGCAACTCACAGTGTCACAGACGGATTACTACGCCA
TTTTCCAAAAGGCCAAAATGCAAATGCTTGTTTCAGAGGATTTCTAAATTTCTGAACACAGCAATCTTGGAGCCACACCA
AAAACTTCTTAATACTT-GTCTTGAAATCTTTGCATGATCAAAAGATATATTCGGCATCAATGTCTTCAATACTCT
>chr3B_1
TATGCCACAAAAAGTATGCCATTGGATGCACATTTGAAAGAATTTTCCGATGATATATGTTAGATGTCATATAA------
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-------------------------CTCATATTTTTTTGACAAAAATAAGAAGTTCCAGTTTGATTTGAAAAACAAAGTG
GTCTTGTATACAGAAATGGAGGGAGTATTGTATCACATCAGTATTATGACCTAGAAATAACCATTTCCAGCTGACTGCTG
TCAGCGCGGTTAACCGAGAAATAACCATTTGTAGATTGATG-ATCATAGCCGCTCTCACAAAC-TATCCATACTTCTATG
TCAGCAAACAAAAAAAATCCATAGCTAACAAAAGAAAATTGAAATAAAGATATCCACGATCTACTACCTCCGTCCTGGTT
TATTGTCCCCCTTAGTATTTTGTGCCAAATTTTGACTATGAATTTCATTAACAAAATGTTAATGCATGTCACAAAAAATA
ATATCATTGAAAACTATATTTAAATATGAATCCAATGATACAAATTTTTATAACTTGCATTAAAATTTTATCAATTAAAT
CTATCGTCAAGTTTTGGCACAAACTATGAGAGGACCAATAAATCACGACGGACTTCGGATGCCATTGCTCGCTTGGAAAC
GTACACAATAGTATTACTACTTTAATTGATAGGCATGTCAAACAAAGTCACCATCGTTTTGCTAGATTATATTATCTCTC
---TTTGATCTGCCCACTGCATTCTAA-TATATTGTCTAGGTAAACCAAATCAGTTGTCTGACCTGCAGCTGCATCAATA
ACAGTGAAGATCACCCCGATTTCAATGAGTCGATTGAGACACGAATCTTTTTAATCTTTCTCATTTTGACTGATATAAGA
CACTTGACTAAGCAAAACT-------------------------------------------------------ACCATT
TGGATCAATCAGTTCCCATTTACCCCTATAAATATCGACATCCAAACTTGTCTAGCACCCTA-GCAAGCTTATCGGCAAT
GGCGGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCATTCGTCCACCGCGCCGAGGTGGCCCTGCGCCTGAAGGGCG
TCCCATTCGAGCTCATCCTTGAAGACCTCAACAACAAGAGCGAGCTGCTGCTGAAGCACAACCCCATCCACAAGACGGTG
CCGGTGCTCCTCCATGGTGACCGGCCAGCCGTCTTAGAGTCCCTCCTCATCGTCGAGTATGTGGACGAGGCCTTCGACGG
CCCGCCGCTCCTCCCCGCCGACCCCTACGAGAGGGCCATGGCTCGCTTCTGGGCCCAATTCATCGAGCAAAAGGTTTGGT
TCTTCTCAAGTTCAAGTCCCTCGTTTTCTTTAGACACTGTGTACATGGCCGGCCATTCATGGCGGATCGACCTTGCGTAT
GTACATGCAGTGCTCCAGGCCGTTCTGGATGGCGGTGTGGCTGGACGACGGGGAGGCGTGGGAGGGGTTCGTGAGGGACA
CCAAGGAGAATCTGGCGCTGCTGGAGGCGCGGCTGCAGGGGAAGCGGTTCTTCGCCGGAGACGCCGTTGGGTACCTGGAC
CTGGCGGCCTGCGGGCTGGCGCACCTGCTGGGCGTGATCGAGCAGGTGGCCGGGGCGAGCCTTGTGGGCGCCGGCGAGTT
CCCCGCGCTGCGCCGGTGGGCGGAGGACTACACCTCCGACGCGACCGTCGTCGCGTGCCTACCGCCGAGGGAGCAGCTCG
CCGCACACTTCGCCGGGAAGAAGGACCGAATCAAGCTCGCCGTCAACGCGATGGTGGGGCGGGCGTAGTTGTCAGTTTGG
GGCATCGATCAATACAGCAAGCGTCAGCAATATATTCAGATTATGTACTGTA----------TGATTTGTCTGTTACGTG
TGTGTTGCCTATGGTGCAAAAAAAATA--AAAATTCATATTAGTATTTGTTGTTACGAAATTTATGGCAAAGTATTGTCA
AAGTACGAAATTTGCTAAAACTCTGGCGCCTGAATATTTTAAGTTTTCATTCAATTTTTTTTGCGAATAGTTTCATTCAC
TCTATGGTTAGCAGTGTATGCGCTTTGTTTTGGG----------------------------------------------
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>chr7D_2073
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-------------------------------GGGACGCGGCTCGTCTGCCGTGAAGAAGGCACGGCAGAACTGCCGTGGA
GCATAATCTCAGCCATTCTTATCTCATCAAGCGCATCCAACGAACAGCAAAACAGCCCCGTCCACGTACGCACGCAGGGC
GCGCGCCAAGTCTCT-CTTCCCTTCTACTCTGTGAGTATTTCC------GAGCAACAGAGCTAACGCAGAAAGGAAAAAC
AAAGCATAGTCGCCGTCCGGCGACGCTGCGGCCGTCCGGCG-------------------ACGCCGTGGCTGTCCGACGA
CGCACTGCCGCCGCCGTCA-------------------GACTTGTCACCGTCTCGTCCCTCTCGACGGCAAGGGAGCAAA
ACTGACGACCTCAAGCAGAACGCCGGCCTAAAGTTCAGACTATGAGCAAGCCTGAAACACACACAAAGAGAACCAGGAAG
TACAAAACAAAGCCACCTTGGCTGCTACTAAACGATCATCTCATTCCTTAATCAACACACAGTCAGAGATACAATTTTCA
ATCAAGAAACGTCAAAGTGTTGATGCAAATTTAGCACTGGAGCA------TCACAGAGTCACAGACGGATTACTACGCCA
TGTCCCAAAAGGCCAAATTGCAAATGCTTGTTTTAGAGGATTTCTAAATTTCTAAACACACAAATCCTGGAGCCACACCA
AACACTTCTTAAAACTTCGTCTTAAAATCTTTGCATGATCAAAAGATATATTCGGCACCAATGTCTTCAATACT--
>chr6A_2074
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--------------------------------GGACGTGGCTCGTCTGCCGTGAAGAAGGCACGGCAGAATTGCCGTGGA
GCATAATCTCAGCCGTTCTTATCTCACCAAACTGATCGGACGAACAGCAAAACAGCCC-GTCCACGTACGCATACAGGAA
GCGCGCCAAGTCTCT-CTTCCCTTCTACTCTGCGAGTATTTCC------GAGCAACAGACCTGACGCAGAAAGGAAAAAC
AGAGCACAGTTGAA------------------CGTCCGGCG-------------------ACGCGGCGG-----------
-------------CCGTCGGCACTAAGCACTGCACGATGACTTGTCACCGTCTTGTCACTCTTAACGG-AAGGGAGCAAA
ACTGACGACCACAAGCAAATCGCCGGCCTACAGTTCAGAATATGAGCAAGCCTGAAACACACACAAAGAGAACCAGGAGG
TACAAAACAAAGCCACCTTGGCTGCTACTAAACGCTCATCTCATTCTTTAATCAACACACAGTCAGAGATACAACTTTTA
ATCAAGAAATGTCAAAGTGTTAATACAAATTTAGCACCGGAGCATGCAACTCACAGAGTCACAGACGGATTATTATGCCA
TTTCCCGAAAGGCCAAAATGCAAATGCTTGTTTTAGAGGATTTCTAAATTTCTGAACACACCAATCCTGGAGCCACACCA
AACACTTCTTAAAACTTCGTCTTGAAATCTTTGCATGATCAAAAGATATATTCGGCATCAATGTCTTCAATACT--
>chr2D_2074
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--------------------------------GGACGCGGCTCGTCTGCCGTGAAGAAGGCACGGCAGAACTGCCGTGGA
GCACAATCTCAGCCGTTATTATCTCATCAAGCGCATCCAACGAACAGCAAAACAGCCCCGTCCA--TACGCATGCAGGGC
GCGCGCCAAATCTCTCCTTCCTTTCTACTCTGTGAGTATTTCC------GAGCAACAGAGCTGACGCAGAAAGGAAAAAC
AGAGCATAGTCGAA------------------CGTCCGACGACACCACGGCCGTCCGGCAACGCCGTGGCTGTCCGACGA
CGCACTGCCGCCGCCGTCG-------------------GACTTGTCACCGTCTCGTCGCTCTCGACGGCAAGGGAGCAAA
ACTGACGACCTCAAGCAGAACGCCGGCCTAAAATTCAGCCTATGAGCAAGCCTGAAACACACACAAAGAGAACCAGGAAG
TACAAAACAAAGCCACCTTGGCTGCTACTAAACGCTCTTCTCATTCCTTAATCAACACACAGCCAGAGATACAATTTTCA
ATTAAGAAACGTCAAAGTGTTGATGCAAATTTAGCACTGGAGCA------TCACAGAGTCACAGACGGATTACTACGCCA
TGTCCCAAAAGGCCAAATTGCAAATGCTT----------------------------------------GAGCCACACCA
AACACTTCTTAAAACTTGGTCTTAAAATCTTTGCATGATCAAAAGATATATTCGGCACCAATGTCTTCAATACT--
>chr1A_2209
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---------GTCTCT-CTTCCCTTCTACTCTGTGAGTATTTCCATTTCCGAGCAACAGAGCTAACGCAGAAAGGAAAAAC
AGAGCATAGTCGAA------------------CGTCCGGCAACGCCGTGGCTGTCCGATGTTGCCGTGGCTGTCCGATGA
CGCACTGCCGCCGCCGTCG-------------------GACTTGTCACCGTCTCGTCGCTCTCGACGGCAAGGGAGCAAA
ACTGACGACCTCAAGCAGAACGCCGGCCTAAAGTTCAGACTATGAGCAAGCCTGAAACACACACAAAGAGAACCAGGAAG
TACAAAACAAAGCCACCTTGGCTGCTACTAAACGCTCATCTCATTCCTTAATCAACACATAGTCAGAGATACAATTTTCA
ATCAACAAACGTCAAAGTGTTGATGCAAATTTTGCACTGGAGCA------TCACAGAGTCACAGACGGATTACTACGCCG
TGTCCCAAAAGGCCAAATTGCAAATGCTTGTTTTAGAGGATTTCTAAATTTCTAAACACACAAATCCTGGAGCCACACCA
AACACTTCTTAAAACTTCGTCTTAAAATCTTTGCATGATCAAAAGATATATTCGGCATCAATGTCTTCAATACT--
>SNPs
-----S------------S-------------------------------------------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----------------------SS-------------
-S---------------------S-----------------------S--------------------------------
-S-S-------------------------SS-----S----S--------------S-----SS---S------------
--------S----------------------S-S--SS------SS--S-S--------------SS--SS---SSSSSS
SSSSSS--SSSSS--S-SS--S----------------------------------------------------------
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-------------S---S--S----------S--------------------------------S-------------SS
SSS------------------------S------------------------S---------------------------
-------S--------------------S--S------------------------------S-----------------
--SS---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
-----------------S--S---S--------S-----------S--S-----------SSS-----------------
---------------------------------------S--------------------------------S-------
----------------------------------------S---------------------------------------
--------------------------S--------------------------------------S-----S--------
-----------------S-----------S---------------------------------------------S--S-
------------S---------SS----------S---------------------------------------------
----S----------S------------------------S-----------------S---------------------
-------------------------S--------------------------------S---------------------
------------------------------------------S-----------------S----S-----S--------
------S-------------------------------------------S--------------S--------------
---------------------------------------------S----------------------------------
------------S------S-----S----S------------S--------SSSSSSSSSS--------------S---
------S----------SS-S-SS-S-SS-----------------------SS------------S----S---S----
--SSSSSSS-S---------SS---S----------------S--------S----S-------S---------------
-S-------------------S---S---S-------------------------------------------S------
------------S---------------------------------S------------S--------------------
--S-S-------------------------S--------------------S---S-S----------------------
----------S-----------------------------------------------------------S---------
-S---------S--------------------------------------------S------S--S-------------
------------------------S----------S-------------------------------------S------
--------------------------------S-------------------------------------------S---
--------------------------------------------------------S-----------------------
---S-----------------------------S--------------------------S-----S-------------
--S---------S-------------------------------------------------------------SS
>forward_141
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----------------------------------------AGCGTTCTGAGCAATGTCTCA-------------------
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>reverse_1555
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----------------------------------TACTGTGTACATGGCCGGC---------------------------
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>forward_576
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----------------------------------------------------------------------------CAAC
AGCATGCCGATCAAGA----------------------------------------------------------------
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>reverse_2380
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-----------------------------------------------------------ATCCACGTACGCATACAGGG-
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