Multiple sequence alignment - TraesCS3D01G486000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G486000 chr3D 100.000 2960 0 0 1 2960 582135205 582132246 0.000000e+00 5467.0
1 TraesCS3D01G486000 chr3D 78.105 475 45 29 2502 2944 582028907 582029354 2.280000e-61 246.0
2 TraesCS3D01G486000 chr3B 92.526 950 59 10 1130 2073 779362552 779363495 0.000000e+00 1351.0
3 TraesCS3D01G486000 chr3B 95.680 625 19 3 2343 2960 779363526 779364149 0.000000e+00 998.0
4 TraesCS3D01G486000 chr3B 86.343 432 29 14 484 906 779361816 779362226 7.530000e-121 444.0
5 TraesCS3D01G486000 chr3B 81.509 411 38 17 2549 2940 779365340 779365731 1.330000e-78 303.0
6 TraesCS3D01G486000 chr3B 90.506 158 8 3 910 1067 779362402 779362552 5.000000e-48 202.0
7 TraesCS3D01G486000 chr3B 88.889 153 13 4 2500 2650 779535253 779535103 5.040000e-43 185.0
8 TraesCS3D01G486000 chr4A 77.444 1432 225 56 1054 2472 709898872 709897526 0.000000e+00 765.0
9 TraesCS3D01G486000 chr7D 80.447 1028 143 39 1054 2060 25404316 25403326 0.000000e+00 732.0
10 TraesCS3D01G486000 chr7A 79.171 1037 154 37 1054 2073 26421057 26420066 0.000000e+00 662.0
11 TraesCS3D01G486000 chr3A 78.663 389 51 16 2545 2920 707589125 707588756 2.290000e-56 230.0
12 TraesCS3D01G486000 chr1A 79.618 157 30 2 298 453 538407364 538407209 8.670000e-21 111.0
13 TraesCS3D01G486000 chr6B 82.692 104 14 3 135 236 518530918 518531019 4.060000e-14 89.8
14 TraesCS3D01G486000 chr2D 92.727 55 3 1 371 425 488369368 488369315 8.800000e-11 78.7
15 TraesCS3D01G486000 chr2D 90.909 55 4 1 371 425 488477655 488477602 4.090000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G486000 chr3D 582132246 582135205 2959 True 5467.0 5467 100.0000 1 2960 1 chr3D.!!$R1 2959
1 TraesCS3D01G486000 chr3B 779361816 779365731 3915 False 659.6 1351 89.3128 484 2960 5 chr3B.!!$F1 2476
2 TraesCS3D01G486000 chr4A 709897526 709898872 1346 True 765.0 765 77.4440 1054 2472 1 chr4A.!!$R1 1418
3 TraesCS3D01G486000 chr7D 25403326 25404316 990 True 732.0 732 80.4470 1054 2060 1 chr7D.!!$R1 1006
4 TraesCS3D01G486000 chr7A 26420066 26421057 991 True 662.0 662 79.1710 1054 2073 1 chr7A.!!$R1 1019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.179092 AGCTAACGCGTAACATCCCC 60.179 55.0 14.46 0.0 42.32 4.81 F
1459 1679 0.250338 AGGAAGTTTGACGGTGAGGC 60.250 55.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1997 0.239347 GCACAGAGTTGCGCAAATCT 59.761 50.0 38.81 38.81 45.32 2.40 R
2644 4339 0.036306 ACCGTGGACCATCAAAGGAC 59.964 55.0 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.766970 CTGGCGAGATGGTGGATC 57.233 61.111 0.00 0.00 0.00 3.36
18 19 2.131405 CTGGCGAGATGGTGGATCT 58.869 57.895 0.00 0.00 44.78 2.75
19 20 0.467384 CTGGCGAGATGGTGGATCTT 59.533 55.000 0.00 0.00 41.91 2.40
20 21 0.911769 TGGCGAGATGGTGGATCTTT 59.088 50.000 0.00 0.00 41.91 2.52
21 22 2.103094 CTGGCGAGATGGTGGATCTTTA 59.897 50.000 0.00 0.00 41.91 1.85
22 23 2.503765 TGGCGAGATGGTGGATCTTTAA 59.496 45.455 0.00 0.00 41.91 1.52
23 24 3.054728 TGGCGAGATGGTGGATCTTTAAA 60.055 43.478 0.00 0.00 41.91 1.52
24 25 3.945285 GGCGAGATGGTGGATCTTTAAAA 59.055 43.478 0.00 0.00 41.91 1.52
25 26 4.035675 GGCGAGATGGTGGATCTTTAAAAG 59.964 45.833 0.00 0.00 41.91 2.27
26 27 4.876107 GCGAGATGGTGGATCTTTAAAAGA 59.124 41.667 0.00 0.00 41.91 2.52
41 42 7.916552 TCTTTAAAAGATCCATTAGCTAACGC 58.083 34.615 8.70 0.00 31.20 4.84
42 43 4.795970 AAAAGATCCATTAGCTAACGCG 57.204 40.909 8.70 3.53 42.32 6.01
43 44 3.454371 AAGATCCATTAGCTAACGCGT 57.546 42.857 5.58 5.58 42.32 6.01
44 45 4.579454 AAGATCCATTAGCTAACGCGTA 57.421 40.909 14.46 0.00 42.32 4.42
45 46 4.579454 AGATCCATTAGCTAACGCGTAA 57.421 40.909 14.46 2.13 42.32 3.18
46 47 4.296690 AGATCCATTAGCTAACGCGTAAC 58.703 43.478 14.46 4.85 42.32 2.50
47 48 3.507103 TCCATTAGCTAACGCGTAACA 57.493 42.857 14.46 0.00 42.32 2.41
48 49 4.049546 TCCATTAGCTAACGCGTAACAT 57.950 40.909 14.46 0.00 42.32 2.71
49 50 4.046462 TCCATTAGCTAACGCGTAACATC 58.954 43.478 14.46 0.00 42.32 3.06
50 51 3.183775 CCATTAGCTAACGCGTAACATCC 59.816 47.826 14.46 0.00 42.32 3.51
51 52 2.497107 TAGCTAACGCGTAACATCCC 57.503 50.000 14.46 0.00 42.32 3.85
52 53 0.179092 AGCTAACGCGTAACATCCCC 60.179 55.000 14.46 0.00 42.32 4.81
53 54 0.460635 GCTAACGCGTAACATCCCCA 60.461 55.000 14.46 0.00 0.00 4.96
54 55 1.808891 GCTAACGCGTAACATCCCCAT 60.809 52.381 14.46 0.00 0.00 4.00
55 56 2.546373 GCTAACGCGTAACATCCCCATA 60.546 50.000 14.46 0.00 0.00 2.74
56 57 2.695127 AACGCGTAACATCCCCATAA 57.305 45.000 14.46 0.00 0.00 1.90
57 58 2.695127 ACGCGTAACATCCCCATAAA 57.305 45.000 11.67 0.00 0.00 1.40
58 59 3.202829 ACGCGTAACATCCCCATAAAT 57.797 42.857 11.67 0.00 0.00 1.40
59 60 4.339872 ACGCGTAACATCCCCATAAATA 57.660 40.909 11.67 0.00 0.00 1.40
60 61 4.706035 ACGCGTAACATCCCCATAAATAA 58.294 39.130 11.67 0.00 0.00 1.40
61 62 5.124645 ACGCGTAACATCCCCATAAATAAA 58.875 37.500 11.67 0.00 0.00 1.40
62 63 5.007921 ACGCGTAACATCCCCATAAATAAAC 59.992 40.000 11.67 0.00 0.00 2.01
63 64 5.445845 GCGTAACATCCCCATAAATAAACG 58.554 41.667 0.00 0.00 0.00 3.60
64 65 5.561339 GCGTAACATCCCCATAAATAAACGG 60.561 44.000 0.00 0.00 0.00 4.44
65 66 5.528320 CGTAACATCCCCATAAATAAACGGT 59.472 40.000 0.00 0.00 0.00 4.83
66 67 5.845391 AACATCCCCATAAATAAACGGTG 57.155 39.130 0.00 0.00 0.00 4.94
67 68 4.862371 ACATCCCCATAAATAAACGGTGT 58.138 39.130 0.00 0.00 0.00 4.16
68 69 4.642885 ACATCCCCATAAATAAACGGTGTG 59.357 41.667 0.00 0.00 0.00 3.82
69 70 3.622630 TCCCCATAAATAAACGGTGTGG 58.377 45.455 0.00 0.00 0.00 4.17
70 71 3.010361 TCCCCATAAATAAACGGTGTGGT 59.990 43.478 0.00 0.00 0.00 4.16
71 72 3.764972 CCCCATAAATAAACGGTGTGGTT 59.235 43.478 0.00 0.00 0.00 3.67
72 73 4.948621 CCCCATAAATAAACGGTGTGGTTA 59.051 41.667 0.00 0.00 0.00 2.85
73 74 5.066764 CCCCATAAATAAACGGTGTGGTTAG 59.933 44.000 0.00 0.00 0.00 2.34
74 75 5.648960 CCCATAAATAAACGGTGTGGTTAGT 59.351 40.000 0.00 0.00 0.00 2.24
75 76 6.183360 CCCATAAATAAACGGTGTGGTTAGTC 60.183 42.308 0.00 0.00 0.00 2.59
76 77 6.596497 CCATAAATAAACGGTGTGGTTAGTCT 59.404 38.462 0.00 0.00 0.00 3.24
77 78 7.765360 CCATAAATAAACGGTGTGGTTAGTCTA 59.235 37.037 0.00 0.00 0.00 2.59
78 79 9.153721 CATAAATAAACGGTGTGGTTAGTCTAA 57.846 33.333 0.00 0.00 0.00 2.10
79 80 9.723601 ATAAATAAACGGTGTGGTTAGTCTAAA 57.276 29.630 0.00 0.00 0.00 1.85
80 81 8.449251 AAATAAACGGTGTGGTTAGTCTAAAA 57.551 30.769 0.00 0.00 0.00 1.52
81 82 8.625786 AATAAACGGTGTGGTTAGTCTAAAAT 57.374 30.769 0.00 0.00 0.00 1.82
82 83 9.723601 AATAAACGGTGTGGTTAGTCTAAAATA 57.276 29.630 0.00 0.00 0.00 1.40
83 84 9.723601 ATAAACGGTGTGGTTAGTCTAAAATAA 57.276 29.630 0.00 0.00 0.00 1.40
84 85 8.449251 AAACGGTGTGGTTAGTCTAAAATAAA 57.551 30.769 0.00 0.00 0.00 1.40
85 86 8.449251 AACGGTGTGGTTAGTCTAAAATAAAA 57.551 30.769 0.00 0.00 0.00 1.52
86 87 7.864686 ACGGTGTGGTTAGTCTAAAATAAAAC 58.135 34.615 0.00 0.00 0.00 2.43
87 88 7.498570 ACGGTGTGGTTAGTCTAAAATAAAACA 59.501 33.333 0.00 0.00 0.00 2.83
88 89 8.508875 CGGTGTGGTTAGTCTAAAATAAAACAT 58.491 33.333 0.00 0.00 0.00 2.71
108 109 6.382919 ACATAGGTATGTTGTTTACAGGGT 57.617 37.500 0.00 0.00 43.99 4.34
109 110 6.786122 ACATAGGTATGTTGTTTACAGGGTT 58.214 36.000 0.00 0.00 43.99 4.11
110 111 7.235804 ACATAGGTATGTTGTTTACAGGGTTT 58.764 34.615 0.00 0.00 43.99 3.27
111 112 7.175990 ACATAGGTATGTTGTTTACAGGGTTTG 59.824 37.037 0.00 0.00 43.99 2.93
112 113 5.451354 AGGTATGTTGTTTACAGGGTTTGT 58.549 37.500 0.00 0.00 40.83 2.83
113 114 6.603224 AGGTATGTTGTTTACAGGGTTTGTA 58.397 36.000 0.00 0.00 40.83 2.41
114 115 6.713450 AGGTATGTTGTTTACAGGGTTTGTAG 59.287 38.462 0.00 0.00 42.92 2.74
115 116 6.072342 GGTATGTTGTTTACAGGGTTTGTAGG 60.072 42.308 0.00 0.00 42.92 3.18
116 117 3.633065 TGTTGTTTACAGGGTTTGTAGGC 59.367 43.478 0.00 0.00 42.92 3.93
117 118 3.579534 TGTTTACAGGGTTTGTAGGCA 57.420 42.857 0.00 0.00 42.92 4.75
118 119 3.215975 TGTTTACAGGGTTTGTAGGCAC 58.784 45.455 0.00 0.00 42.92 5.01
119 120 3.215975 GTTTACAGGGTTTGTAGGCACA 58.784 45.455 0.00 0.00 42.92 4.57
120 121 2.554370 TACAGGGTTTGTAGGCACAC 57.446 50.000 0.00 0.00 41.29 3.82
121 122 0.843984 ACAGGGTTTGTAGGCACACT 59.156 50.000 0.00 0.00 38.56 3.55
122 123 1.238439 CAGGGTTTGTAGGCACACTG 58.762 55.000 0.00 0.00 33.30 3.66
123 124 0.843984 AGGGTTTGTAGGCACACTGT 59.156 50.000 0.00 0.00 33.30 3.55
124 125 1.214424 AGGGTTTGTAGGCACACTGTT 59.786 47.619 0.00 0.00 33.30 3.16
125 126 2.440253 AGGGTTTGTAGGCACACTGTTA 59.560 45.455 0.00 0.00 33.30 2.41
126 127 3.117813 AGGGTTTGTAGGCACACTGTTAA 60.118 43.478 0.00 0.00 33.30 2.01
127 128 3.633065 GGGTTTGTAGGCACACTGTTAAA 59.367 43.478 0.00 0.00 33.30 1.52
128 129 4.261447 GGGTTTGTAGGCACACTGTTAAAG 60.261 45.833 0.00 0.00 33.30 1.85
129 130 4.337274 GGTTTGTAGGCACACTGTTAAAGT 59.663 41.667 0.00 0.00 40.93 2.66
130 131 5.163591 GGTTTGTAGGCACACTGTTAAAGTT 60.164 40.000 0.00 0.00 36.83 2.66
131 132 5.493133 TTGTAGGCACACTGTTAAAGTTG 57.507 39.130 0.00 0.00 36.83 3.16
132 133 4.519213 TGTAGGCACACTGTTAAAGTTGT 58.481 39.130 0.00 0.00 36.83 3.32
133 134 5.672503 TGTAGGCACACTGTTAAAGTTGTA 58.327 37.500 0.00 0.00 36.83 2.41
134 135 6.114089 TGTAGGCACACTGTTAAAGTTGTAA 58.886 36.000 0.00 0.00 36.83 2.41
135 136 6.598457 TGTAGGCACACTGTTAAAGTTGTAAA 59.402 34.615 0.00 0.00 36.83 2.01
136 137 6.518208 AGGCACACTGTTAAAGTTGTAAAA 57.482 33.333 0.00 0.00 36.83 1.52
137 138 6.926313 AGGCACACTGTTAAAGTTGTAAAAA 58.074 32.000 0.00 0.00 36.83 1.94
138 139 7.552459 AGGCACACTGTTAAAGTTGTAAAAAT 58.448 30.769 0.00 0.00 36.83 1.82
139 140 8.688151 AGGCACACTGTTAAAGTTGTAAAAATA 58.312 29.630 0.00 0.00 36.83 1.40
140 141 8.748582 GGCACACTGTTAAAGTTGTAAAAATAC 58.251 33.333 0.00 0.00 36.83 1.89
141 142 9.511144 GCACACTGTTAAAGTTGTAAAAATACT 57.489 29.630 0.00 0.00 36.83 2.12
208 209 9.566432 AAAACATCTAGATACATCCATTTCTCC 57.434 33.333 4.54 0.00 0.00 3.71
209 210 6.929625 ACATCTAGATACATCCATTTCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
210 211 6.495181 ACATCTAGATACATCCATTTCTCCGT 59.505 38.462 4.54 0.00 0.00 4.69
211 212 6.576662 TCTAGATACATCCATTTCTCCGTC 57.423 41.667 0.00 0.00 0.00 4.79
212 213 6.068670 TCTAGATACATCCATTTCTCCGTCA 58.931 40.000 0.00 0.00 0.00 4.35
213 214 5.614324 AGATACATCCATTTCTCCGTCAA 57.386 39.130 0.00 0.00 0.00 3.18
214 215 5.360591 AGATACATCCATTTCTCCGTCAAC 58.639 41.667 0.00 0.00 0.00 3.18
215 216 3.703001 ACATCCATTTCTCCGTCAACT 57.297 42.857 0.00 0.00 0.00 3.16
216 217 4.819105 ACATCCATTTCTCCGTCAACTA 57.181 40.909 0.00 0.00 0.00 2.24
217 218 5.359194 ACATCCATTTCTCCGTCAACTAT 57.641 39.130 0.00 0.00 0.00 2.12
218 219 5.745227 ACATCCATTTCTCCGTCAACTATT 58.255 37.500 0.00 0.00 0.00 1.73
219 220 6.180472 ACATCCATTTCTCCGTCAACTATTT 58.820 36.000 0.00 0.00 0.00 1.40
220 221 6.316390 ACATCCATTTCTCCGTCAACTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
221 222 5.183228 TCCATTTCTCCGTCAACTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
222 223 4.034048 CCATTTCTCCGTCAACTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
223 224 2.953466 TCTCCGTCAACTATTTCCGG 57.047 50.000 0.00 0.00 39.98 5.14
224 225 2.173519 TCTCCGTCAACTATTTCCGGT 58.826 47.619 0.00 0.00 39.62 5.28
225 226 2.165030 TCTCCGTCAACTATTTCCGGTC 59.835 50.000 0.00 0.00 39.62 4.79
226 227 1.135315 TCCGTCAACTATTTCCGGTCG 60.135 52.381 0.00 0.00 39.62 4.79
227 228 1.274596 CGTCAACTATTTCCGGTCGG 58.725 55.000 0.00 2.52 0.00 4.79
228 229 1.135315 CGTCAACTATTTCCGGTCGGA 60.135 52.381 8.14 8.14 43.52 4.55
229 230 2.537401 GTCAACTATTTCCGGTCGGAG 58.463 52.381 12.07 3.76 46.06 4.63
230 231 2.165030 GTCAACTATTTCCGGTCGGAGA 59.835 50.000 12.07 8.61 46.06 3.71
231 232 2.426024 TCAACTATTTCCGGTCGGAGAG 59.574 50.000 12.07 12.67 46.06 3.20
232 233 2.426024 CAACTATTTCCGGTCGGAGAGA 59.574 50.000 12.07 4.75 46.06 3.10
233 234 2.299521 ACTATTTCCGGTCGGAGAGAG 58.700 52.381 18.70 18.70 46.06 3.20
234 235 2.299521 CTATTTCCGGTCGGAGAGAGT 58.700 52.381 14.01 0.89 46.06 3.24
235 236 2.431954 ATTTCCGGTCGGAGAGAGTA 57.568 50.000 12.07 0.00 46.06 2.59
236 237 1.457346 TTTCCGGTCGGAGAGAGTAC 58.543 55.000 12.07 0.00 46.06 2.73
237 238 0.325933 TTCCGGTCGGAGAGAGTACA 59.674 55.000 12.07 0.00 46.06 2.90
238 239 0.325933 TCCGGTCGGAGAGAGTACAA 59.674 55.000 8.14 0.00 39.76 2.41
239 240 1.171308 CCGGTCGGAGAGAGTACAAA 58.829 55.000 2.83 0.00 36.95 2.83
240 241 1.542915 CCGGTCGGAGAGAGTACAAAA 59.457 52.381 2.83 0.00 36.95 2.44
241 242 2.165845 CCGGTCGGAGAGAGTACAAAAT 59.834 50.000 2.83 0.00 36.95 1.82
242 243 3.379372 CCGGTCGGAGAGAGTACAAAATA 59.621 47.826 2.83 0.00 36.95 1.40
243 244 4.349501 CGGTCGGAGAGAGTACAAAATAC 58.650 47.826 0.00 0.00 36.95 1.89
244 245 4.680702 GGTCGGAGAGAGTACAAAATACC 58.319 47.826 0.00 0.00 36.95 2.73
245 246 4.159135 GGTCGGAGAGAGTACAAAATACCA 59.841 45.833 0.00 0.00 36.95 3.25
246 247 5.337009 GGTCGGAGAGAGTACAAAATACCAA 60.337 44.000 0.00 0.00 36.95 3.67
247 248 6.161381 GTCGGAGAGAGTACAAAATACCAAA 58.839 40.000 0.00 0.00 36.95 3.28
248 249 6.090493 GTCGGAGAGAGTACAAAATACCAAAC 59.910 42.308 0.00 0.00 36.95 2.93
249 250 5.061808 CGGAGAGAGTACAAAATACCAAACG 59.938 44.000 0.00 0.00 0.00 3.60
250 251 5.350640 GGAGAGAGTACAAAATACCAAACGG 59.649 44.000 0.00 0.00 0.00 4.44
251 252 6.105397 AGAGAGTACAAAATACCAAACGGA 57.895 37.500 0.00 0.00 0.00 4.69
252 253 6.527423 AGAGAGTACAAAATACCAAACGGAA 58.473 36.000 0.00 0.00 0.00 4.30
253 254 6.993902 AGAGAGTACAAAATACCAAACGGAAA 59.006 34.615 0.00 0.00 0.00 3.13
254 255 7.499895 AGAGAGTACAAAATACCAAACGGAAAA 59.500 33.333 0.00 0.00 0.00 2.29
255 256 7.998580 AGAGTACAAAATACCAAACGGAAAAA 58.001 30.769 0.00 0.00 0.00 1.94
256 257 8.132995 AGAGTACAAAATACCAAACGGAAAAAG 58.867 33.333 0.00 0.00 0.00 2.27
257 258 7.204604 AGTACAAAATACCAAACGGAAAAAGG 58.795 34.615 0.00 0.00 0.00 3.11
258 259 6.223351 ACAAAATACCAAACGGAAAAAGGA 57.777 33.333 0.00 0.00 0.00 3.36
259 260 6.822442 ACAAAATACCAAACGGAAAAAGGAT 58.178 32.000 0.00 0.00 0.00 3.24
260 261 7.276658 ACAAAATACCAAACGGAAAAAGGATT 58.723 30.769 0.00 0.00 0.00 3.01
261 262 8.422566 ACAAAATACCAAACGGAAAAAGGATTA 58.577 29.630 0.00 0.00 0.00 1.75
262 263 9.430623 CAAAATACCAAACGGAAAAAGGATTAT 57.569 29.630 0.00 0.00 0.00 1.28
268 269 9.031537 ACCAAACGGAAAAAGGATTATATTTCT 57.968 29.630 0.00 0.00 33.42 2.52
269 270 9.869757 CCAAACGGAAAAAGGATTATATTTCTT 57.130 29.630 0.00 0.00 33.42 2.52
289 290 9.869757 ATTTCTTTTGTTATTATACAAGGGCAC 57.130 29.630 0.00 0.00 39.06 5.01
290 291 8.644374 TTCTTTTGTTATTATACAAGGGCACT 57.356 30.769 0.00 0.00 39.06 4.40
291 292 8.644374 TCTTTTGTTATTATACAAGGGCACTT 57.356 30.769 0.00 0.00 39.06 3.16
292 293 9.084533 TCTTTTGTTATTATACAAGGGCACTTT 57.915 29.630 0.00 0.00 39.06 2.66
293 294 9.705290 CTTTTGTTATTATACAAGGGCACTTTT 57.295 29.630 0.00 0.00 39.06 2.27
320 321 9.729281 TTCAAAATTTAGACTTATAACCTCGGT 57.271 29.630 0.00 0.00 0.00 4.69
321 322 9.374838 TCAAAATTTAGACTTATAACCTCGGTC 57.625 33.333 0.00 0.00 0.00 4.79
322 323 9.158233 CAAAATTTAGACTTATAACCTCGGTCA 57.842 33.333 0.00 0.00 0.00 4.02
323 324 9.729281 AAAATTTAGACTTATAACCTCGGTCAA 57.271 29.630 0.00 0.00 0.00 3.18
324 325 9.729281 AAATTTAGACTTATAACCTCGGTCAAA 57.271 29.630 0.00 4.40 0.00 2.69
325 326 9.729281 AATTTAGACTTATAACCTCGGTCAAAA 57.271 29.630 5.04 0.00 0.00 2.44
326 327 9.729281 ATTTAGACTTATAACCTCGGTCAAAAA 57.271 29.630 5.04 5.33 0.00 1.94
386 387 9.269453 TGACAAATTATTTGAAATGTGCATTCA 57.731 25.926 22.53 9.69 43.26 2.57
391 392 9.562583 AATTATTTGAAATGTGCATTCAATTGC 57.437 25.926 13.26 1.23 43.07 3.56
404 405 7.728580 GCATTCAATTGCATAATTTTTGTGG 57.271 32.000 0.00 0.00 42.31 4.17
405 406 6.251801 GCATTCAATTGCATAATTTTTGTGGC 59.748 34.615 0.00 0.00 42.31 5.01
406 407 6.872628 TTCAATTGCATAATTTTTGTGGCA 57.127 29.167 0.00 0.00 34.34 4.92
407 408 7.450124 TTCAATTGCATAATTTTTGTGGCAT 57.550 28.000 0.00 0.00 34.34 4.40
408 409 8.557592 TTCAATTGCATAATTTTTGTGGCATA 57.442 26.923 0.00 0.00 34.34 3.14
409 410 8.734218 TCAATTGCATAATTTTTGTGGCATAT 57.266 26.923 0.00 0.00 34.34 1.78
410 411 9.828039 TCAATTGCATAATTTTTGTGGCATATA 57.172 25.926 0.00 0.00 34.34 0.86
413 414 9.835389 ATTGCATAATTTTTGTGGCATATAACT 57.165 25.926 0.00 0.00 0.00 2.24
414 415 8.870160 TGCATAATTTTTGTGGCATATAACTC 57.130 30.769 0.00 0.00 0.00 3.01
415 416 8.473219 TGCATAATTTTTGTGGCATATAACTCA 58.527 29.630 0.00 0.00 0.00 3.41
416 417 9.480053 GCATAATTTTTGTGGCATATAACTCAT 57.520 29.630 0.00 0.00 0.00 2.90
495 496 8.242739 AGAAAGTATAGAACGAGGAAGTACAAC 58.757 37.037 0.00 0.00 0.00 3.32
511 513 1.546923 ACAACATCCGTATCCGTGACA 59.453 47.619 0.00 0.00 0.00 3.58
539 541 3.059188 ACATCCGATTCGTGTTTGTGTTC 60.059 43.478 5.20 0.00 0.00 3.18
541 543 1.259507 CCGATTCGTGTTTGTGTTCGT 59.740 47.619 5.20 0.00 0.00 3.85
543 545 2.217847 CGATTCGTGTTTGTGTTCGTCT 59.782 45.455 0.00 0.00 0.00 4.18
544 546 3.658342 CGATTCGTGTTTGTGTTCGTCTC 60.658 47.826 0.00 0.00 0.00 3.36
545 547 2.572191 TCGTGTTTGTGTTCGTCTCT 57.428 45.000 0.00 0.00 0.00 3.10
546 548 2.456989 TCGTGTTTGTGTTCGTCTCTC 58.543 47.619 0.00 0.00 0.00 3.20
547 549 2.098607 TCGTGTTTGTGTTCGTCTCTCT 59.901 45.455 0.00 0.00 0.00 3.10
548 550 2.858344 CGTGTTTGTGTTCGTCTCTCTT 59.142 45.455 0.00 0.00 0.00 2.85
598 602 2.294512 GGAAAAGAACACCAGCCTTCTG 59.705 50.000 0.00 0.00 40.02 3.02
802 811 2.494918 CCGTCAGGTAAGGCTCCG 59.505 66.667 0.00 0.00 0.00 4.63
838 847 1.066858 CCGTCTTCCTCTTGCTTGCTA 60.067 52.381 0.00 0.00 0.00 3.49
839 848 2.612972 CCGTCTTCCTCTTGCTTGCTAA 60.613 50.000 0.00 0.00 0.00 3.09
855 864 3.733344 TAATCCCGCTGCACGAGCC 62.733 63.158 1.39 0.00 46.01 4.70
873 882 1.057822 CGTGCGACTTCATCAAGCG 59.942 57.895 0.00 0.00 34.33 4.68
875 884 1.374631 TGCGACTTCATCAAGCGCT 60.375 52.632 2.64 2.64 46.44 5.92
907 916 3.260100 GGATGGATGGGGGCGGAT 61.260 66.667 0.00 0.00 0.00 4.18
918 1099 1.975680 GGGGGCGGATGAACTTATAGA 59.024 52.381 0.00 0.00 0.00 1.98
928 1109 8.612619 GCGGATGAACTTATAGAGAAAATCAAA 58.387 33.333 0.00 0.00 0.00 2.69
984 1165 2.361757 TGCTCCATGTTTGTTTCAGGTG 59.638 45.455 0.00 0.00 0.00 4.00
987 1168 2.100584 TCCATGTTTGTTTCAGGTGCAC 59.899 45.455 8.80 8.80 0.00 4.57
988 1169 2.118683 CATGTTTGTTTCAGGTGCACG 58.881 47.619 11.45 0.00 0.00 5.34
1021 1202 4.101448 AGGCACCACCATCGAGGC 62.101 66.667 0.00 0.00 43.14 4.70
1035 1216 1.123928 CGAGGCAGGAAGGAACCTAT 58.876 55.000 0.00 0.00 38.32 2.57
1038 1219 1.566231 AGGCAGGAAGGAACCTATTGG 59.434 52.381 0.00 0.00 38.32 3.16
1039 1220 1.393603 GCAGGAAGGAACCTATTGGC 58.606 55.000 0.00 0.00 38.32 4.52
1040 1221 1.340991 GCAGGAAGGAACCTATTGGCA 60.341 52.381 0.00 0.00 38.32 4.92
1041 1222 2.687914 GCAGGAAGGAACCTATTGGCAT 60.688 50.000 0.00 0.00 38.32 4.40
1042 1223 3.635591 CAGGAAGGAACCTATTGGCATT 58.364 45.455 0.00 0.00 38.32 3.56
1043 1224 3.382546 CAGGAAGGAACCTATTGGCATTG 59.617 47.826 0.00 0.00 38.32 2.82
1044 1225 2.695147 GGAAGGAACCTATTGGCATTGG 59.305 50.000 0.00 0.00 36.63 3.16
1070 1251 0.615850 ACTGCCCTAGCCTTGTTCTC 59.384 55.000 0.00 0.00 38.69 2.87
1076 1257 3.798202 CCCTAGCCTTGTTCTCATGTAC 58.202 50.000 0.00 0.00 0.00 2.90
1077 1258 3.197766 CCCTAGCCTTGTTCTCATGTACA 59.802 47.826 0.00 0.00 0.00 2.90
1085 1266 5.812642 CCTTGTTCTCATGTACAGTATCACC 59.187 44.000 0.33 0.00 0.00 4.02
1101 1286 6.150976 CAGTATCACCAGATTTTGCAACCTTA 59.849 38.462 0.00 0.00 35.67 2.69
1103 1288 5.389859 TCACCAGATTTTGCAACCTTATG 57.610 39.130 0.00 0.00 0.00 1.90
1104 1289 4.832266 TCACCAGATTTTGCAACCTTATGT 59.168 37.500 0.00 0.00 0.00 2.29
1105 1290 5.048083 TCACCAGATTTTGCAACCTTATGTC 60.048 40.000 0.00 0.00 0.00 3.06
1126 1334 2.033299 CGTCTGTCTTTTGTTGCCATGT 59.967 45.455 0.00 0.00 0.00 3.21
1127 1335 3.249799 CGTCTGTCTTTTGTTGCCATGTA 59.750 43.478 0.00 0.00 0.00 2.29
1128 1336 4.537015 GTCTGTCTTTTGTTGCCATGTAC 58.463 43.478 0.00 0.00 0.00 2.90
1129 1337 4.275936 GTCTGTCTTTTGTTGCCATGTACT 59.724 41.667 0.00 0.00 0.00 2.73
1130 1338 5.468746 GTCTGTCTTTTGTTGCCATGTACTA 59.531 40.000 0.00 0.00 0.00 1.82
1131 1339 6.149474 GTCTGTCTTTTGTTGCCATGTACTAT 59.851 38.462 0.00 0.00 0.00 2.12
1200 1410 7.428826 AGGCTCTGTTTGAACTTCAAAATTAG 58.571 34.615 16.79 14.72 46.53 1.73
1227 1437 3.808466 TCCATGACATCACAGCTAGTC 57.192 47.619 0.00 0.00 0.00 2.59
1234 1444 2.763448 ACATCACAGCTAGTCTTCTCCC 59.237 50.000 0.00 0.00 0.00 4.30
1240 1450 1.677637 GCTAGTCTTCTCCCCCACCG 61.678 65.000 0.00 0.00 0.00 4.94
1337 1547 2.484264 GACATGGTTCCAGCTTACACAC 59.516 50.000 0.00 0.00 0.00 3.82
1433 1652 4.604843 TCATGAATCATGAGTTTGCGTC 57.395 40.909 20.85 0.00 44.60 5.19
1441 1660 4.044426 TCATGAGTTTGCGTCGATATCAG 58.956 43.478 3.12 0.00 0.00 2.90
1455 1675 3.551890 CGATATCAGGAAGTTTGACGGTG 59.448 47.826 3.12 0.00 0.00 4.94
1459 1679 0.250338 AGGAAGTTTGACGGTGAGGC 60.250 55.000 0.00 0.00 0.00 4.70
1460 1680 0.250338 GGAAGTTTGACGGTGAGGCT 60.250 55.000 0.00 0.00 0.00 4.58
1464 1684 1.149148 GTTTGACGGTGAGGCTCTTC 58.851 55.000 16.72 8.74 0.00 2.87
1473 1696 2.614229 GGTGAGGCTCTTCTGGTTTCTC 60.614 54.545 16.72 0.00 0.00 2.87
1500 1723 1.068121 GGGCTACAGGGAAGGCATAT 58.932 55.000 0.00 0.00 41.11 1.78
1617 1841 7.573968 ATTACTAGGTGAATTGGATTTCTGC 57.426 36.000 0.00 0.00 0.00 4.26
1626 1850 2.219080 TGGATTTCTGCTCATGCCAA 57.781 45.000 0.00 0.00 38.71 4.52
1643 1867 7.592938 TCATGCCAACTACAGTTTTCTTTATG 58.407 34.615 0.00 0.00 35.83 1.90
1668 1892 9.931698 TGGACTTCCTCTTATATACTGTTCTTA 57.068 33.333 0.00 0.00 36.82 2.10
1713 1937 1.915141 AAAGCAGTGCATTGGCTAGT 58.085 45.000 19.20 0.24 41.91 2.57
1714 1938 1.457346 AAGCAGTGCATTGGCTAGTC 58.543 50.000 19.20 0.00 41.91 2.59
1718 1942 2.012673 CAGTGCATTGGCTAGTCTTCC 58.987 52.381 0.32 0.00 41.91 3.46
1719 1943 1.009829 GTGCATTGGCTAGTCTTCCG 58.990 55.000 0.00 0.00 41.91 4.30
1722 1946 1.202698 GCATTGGCTAGTCTTCCGGAT 60.203 52.381 4.15 0.00 36.96 4.18
1746 1970 8.848474 ATAGTCTAAAAGAAAAGTTGCTGCTA 57.152 30.769 0.00 0.00 0.00 3.49
1749 1973 7.041712 AGTCTAAAAGAAAAGTTGCTGCTAGAC 60.042 37.037 0.00 5.32 33.55 2.59
1773 1997 3.955471 CCAGCATAGAGGGAAACTTGAA 58.045 45.455 0.00 0.00 0.00 2.69
1801 2025 3.374745 CGCAACTCTGTGCAAGAAATTT 58.625 40.909 0.00 0.00 45.19 1.82
1816 2040 1.542492 AATTTCACCAGAGGCTGCAG 58.458 50.000 10.11 10.11 0.00 4.41
1827 2051 2.482374 GCTGCAGTGCGGATGTTC 59.518 61.111 28.23 5.40 37.02 3.18
1872 2096 0.460987 CTCCGCTAGTGGAAAGCAGG 60.461 60.000 24.81 9.32 40.08 4.85
1879 2103 2.071778 AGTGGAAAGCAGGCTTCAAA 57.928 45.000 7.03 0.00 34.84 2.69
1881 2105 1.039856 TGGAAAGCAGGCTTCAAACC 58.960 50.000 7.03 9.16 34.84 3.27
1933 3610 3.426695 CGAATGCCCAGATGTTCAAGTTC 60.427 47.826 0.00 0.00 0.00 3.01
1952 3629 2.755650 TCCTGAAGAGTTGAAACGAGC 58.244 47.619 0.00 0.00 0.00 5.03
1973 3650 3.600388 CTCCATAAGCAAGGTCGAAAGT 58.400 45.455 0.00 0.00 0.00 2.66
1974 3651 3.334691 TCCATAAGCAAGGTCGAAAGTG 58.665 45.455 0.00 0.00 0.00 3.16
1975 3652 3.007506 TCCATAAGCAAGGTCGAAAGTGA 59.992 43.478 0.00 0.00 0.00 3.41
1978 3655 3.971032 AAGCAAGGTCGAAAGTGAAAG 57.029 42.857 0.00 0.00 0.00 2.62
2004 3681 3.540314 TTGCAAGCACCACTGATTTTT 57.460 38.095 0.00 0.00 0.00 1.94
2029 3706 9.702253 TTTATCTCTGGTAGAATCACTTAGACT 57.298 33.333 0.00 0.00 37.89 3.24
2034 3712 6.948886 TCTGGTAGAATCACTTAGACTGAGTT 59.051 38.462 0.00 0.00 0.00 3.01
2048 3726 3.932089 GACTGAGTTCTTCTGAAGGATGC 59.068 47.826 16.83 5.81 32.15 3.91
2077 3755 6.816640 TGTAAACACTGTGATACTAAGGATGC 59.183 38.462 15.86 0.00 0.00 3.91
2078 3756 5.420725 AACACTGTGATACTAAGGATGCA 57.579 39.130 15.86 0.00 0.00 3.96
2079 3757 5.016051 ACACTGTGATACTAAGGATGCAG 57.984 43.478 15.86 0.00 0.00 4.41
2081 3759 5.656859 ACACTGTGATACTAAGGATGCAGTA 59.343 40.000 15.86 0.00 34.67 2.74
2082 3760 6.183360 ACACTGTGATACTAAGGATGCAGTAG 60.183 42.308 15.86 0.00 34.67 2.57
2083 3761 6.039829 CACTGTGATACTAAGGATGCAGTAGA 59.960 42.308 0.32 0.00 34.67 2.59
2085 3763 7.040062 ACTGTGATACTAAGGATGCAGTAGATC 60.040 40.741 0.00 0.00 34.67 2.75
2089 3767 7.452813 TGATACTAAGGATGCAGTAGATCATGT 59.547 37.037 0.00 0.00 31.10 3.21
2092 3770 2.064762 GGATGCAGTAGATCATGTCGC 58.935 52.381 0.00 0.00 0.00 5.19
2094 3772 0.104855 TGCAGTAGATCATGTCGCCC 59.895 55.000 0.00 0.00 0.00 6.13
2095 3773 0.104855 GCAGTAGATCATGTCGCCCA 59.895 55.000 0.00 0.00 0.00 5.36
2096 3774 1.270518 GCAGTAGATCATGTCGCCCAT 60.271 52.381 0.00 0.00 0.00 4.00
2097 3775 2.808202 GCAGTAGATCATGTCGCCCATT 60.808 50.000 0.00 0.00 0.00 3.16
2100 3778 5.056480 CAGTAGATCATGTCGCCCATTTTA 58.944 41.667 0.00 0.00 0.00 1.52
2102 3780 2.872245 AGATCATGTCGCCCATTTTACG 59.128 45.455 0.00 0.00 0.00 3.18
2103 3781 0.730265 TCATGTCGCCCATTTTACGC 59.270 50.000 0.00 0.00 0.00 4.42
2105 3783 1.937223 CATGTCGCCCATTTTACGCTA 59.063 47.619 0.00 0.00 0.00 4.26
2106 3784 2.319136 TGTCGCCCATTTTACGCTAT 57.681 45.000 0.00 0.00 0.00 2.97
2107 3785 1.937223 TGTCGCCCATTTTACGCTATG 59.063 47.619 0.00 0.00 0.00 2.23
2124 3804 6.170506 ACGCTATGAAACTCCTGTAAATTCA 58.829 36.000 0.00 0.00 34.80 2.57
2173 3853 5.581126 TTCTTTGTGACTGTTGCATCTTT 57.419 34.783 0.00 0.00 0.00 2.52
2179 3859 4.035558 TGTGACTGTTGCATCTTTCTGTTC 59.964 41.667 0.00 0.00 0.00 3.18
2187 3867 5.695851 TGCATCTTTCTGTTCTTCCTTTC 57.304 39.130 0.00 0.00 0.00 2.62
2191 3871 5.124036 TCTTTCTGTTCTTCCTTTCCCAA 57.876 39.130 0.00 0.00 0.00 4.12
2192 3872 4.887655 TCTTTCTGTTCTTCCTTTCCCAAC 59.112 41.667 0.00 0.00 0.00 3.77
2193 3873 3.223674 TCTGTTCTTCCTTTCCCAACC 57.776 47.619 0.00 0.00 0.00 3.77
2194 3874 1.880027 CTGTTCTTCCTTTCCCAACCG 59.120 52.381 0.00 0.00 0.00 4.44
2195 3875 1.213430 TGTTCTTCCTTTCCCAACCGT 59.787 47.619 0.00 0.00 0.00 4.83
2211 3891 2.522185 ACCGTTGCTCTGGTCTACTTA 58.478 47.619 0.00 0.00 31.16 2.24
2213 3893 3.251571 CCGTTGCTCTGGTCTACTTAAC 58.748 50.000 0.00 0.00 0.00 2.01
2218 3898 3.260884 TGCTCTGGTCTACTTAACCCTTG 59.739 47.826 0.00 0.00 35.84 3.61
2219 3899 3.369576 GCTCTGGTCTACTTAACCCTTGG 60.370 52.174 0.00 0.00 35.84 3.61
2220 3900 2.570302 TCTGGTCTACTTAACCCTTGGC 59.430 50.000 0.00 0.00 35.84 4.52
2221 3901 2.304761 CTGGTCTACTTAACCCTTGGCA 59.695 50.000 0.00 0.00 35.84 4.92
2222 3902 2.916934 TGGTCTACTTAACCCTTGGCAT 59.083 45.455 0.00 0.00 35.84 4.40
2223 3903 3.054655 TGGTCTACTTAACCCTTGGCATC 60.055 47.826 0.00 0.00 35.84 3.91
2225 3905 4.192317 GTCTACTTAACCCTTGGCATCTG 58.808 47.826 0.00 0.00 0.00 2.90
2226 3906 1.839424 ACTTAACCCTTGGCATCTGC 58.161 50.000 0.00 0.00 41.14 4.26
2227 3907 1.075374 ACTTAACCCTTGGCATCTGCA 59.925 47.619 4.33 0.00 44.36 4.41
2228 3908 2.170166 CTTAACCCTTGGCATCTGCAA 58.830 47.619 4.33 0.00 44.36 4.08
2230 3910 1.648116 AACCCTTGGCATCTGCAATT 58.352 45.000 4.33 0.00 44.36 2.32
2232 3912 0.461339 CCCTTGGCATCTGCAATTGC 60.461 55.000 23.69 23.69 44.36 3.56
2233 3913 0.535335 CCTTGGCATCTGCAATTGCT 59.465 50.000 29.37 8.45 44.36 3.91
2234 3914 1.752498 CCTTGGCATCTGCAATTGCTA 59.248 47.619 29.37 18.52 44.36 3.49
2236 3916 3.181469 CCTTGGCATCTGCAATTGCTAAT 60.181 43.478 29.37 19.49 44.36 1.73
2237 3917 3.446310 TGGCATCTGCAATTGCTAATG 57.554 42.857 29.37 28.14 44.36 1.90
2238 3918 3.025262 TGGCATCTGCAATTGCTAATGA 58.975 40.909 31.93 23.80 44.36 2.57
2240 3920 4.049186 GGCATCTGCAATTGCTAATGAAG 58.951 43.478 31.93 21.61 44.36 3.02
2241 3921 4.441079 GGCATCTGCAATTGCTAATGAAGT 60.441 41.667 31.93 12.85 44.36 3.01
2251 3931 8.137437 GCAATTGCTAATGAAGTGTATTGGTAT 58.863 33.333 23.21 0.00 38.21 2.73
2255 3935 9.461312 TTGCTAATGAAGTGTATTGGTATTCTT 57.539 29.630 0.00 0.00 0.00 2.52
2261 3952 9.685276 ATGAAGTGTATTGGTATTCTTCATTGA 57.315 29.630 10.94 0.00 44.64 2.57
2262 3953 9.685276 TGAAGTGTATTGGTATTCTTCATTGAT 57.315 29.630 0.00 0.00 37.13 2.57
2296 3987 9.747898 TGGGAAAGTATGAATAATTGTTACACT 57.252 29.630 0.00 0.00 0.00 3.55
2322 4013 5.512753 CACTCAGTGCAGATATCACTAGT 57.487 43.478 5.32 0.00 42.38 2.57
2327 4018 8.140628 ACTCAGTGCAGATATCACTAGTTATTG 58.859 37.037 5.32 0.00 42.38 1.90
2371 4062 6.404734 GGTTCTGATAATTTCTGGCATTTCGT 60.405 38.462 0.00 0.00 0.00 3.85
2384 4075 6.597672 TCTGGCATTTCGTAATACTGACAATT 59.402 34.615 0.00 0.00 0.00 2.32
2385 4076 7.766738 TCTGGCATTTCGTAATACTGACAATTA 59.233 33.333 0.00 0.00 0.00 1.40
2386 4077 8.445275 TGGCATTTCGTAATACTGACAATTAT 57.555 30.769 0.00 0.00 0.00 1.28
2388 4079 7.323656 GGCATTTCGTAATACTGACAATTATGC 59.676 37.037 0.00 0.00 0.00 3.14
2389 4080 8.070171 GCATTTCGTAATACTGACAATTATGCT 58.930 33.333 0.00 0.00 0.00 3.79
2449 4140 5.295292 ACTGCATATTTGATGAAACCTCTCG 59.705 40.000 0.00 0.00 0.00 4.04
2450 4141 5.185454 TGCATATTTGATGAAACCTCTCGT 58.815 37.500 0.00 0.00 0.00 4.18
2454 4145 4.600692 TTTGATGAAACCTCTCGTCTCA 57.399 40.909 0.00 0.00 33.28 3.27
2472 4164 9.907576 CTCGTCTCATTGTTTTTCATATCTAAC 57.092 33.333 0.00 0.00 0.00 2.34
2494 4187 7.440523 AACGAGCATTTATCAACTTTTCTCT 57.559 32.000 0.00 0.00 0.00 3.10
2498 4191 9.185192 CGAGCATTTATCAACTTTTCTCTTTTT 57.815 29.630 0.00 0.00 0.00 1.94
2509 4202 8.589629 CAACTTTTCTCTTTTTCATGTTCTGTG 58.410 33.333 0.00 0.00 0.00 3.66
2514 4207 5.008019 TCTCTTTTTCATGTTCTGTGCAGAC 59.992 40.000 0.79 0.00 37.14 3.51
2527 4220 3.743521 TGTGCAGACAGAAAATGCTAGT 58.256 40.909 0.00 0.00 40.62 2.57
2528 4221 4.136796 TGTGCAGACAGAAAATGCTAGTT 58.863 39.130 0.00 0.00 40.62 2.24
2529 4222 4.580167 TGTGCAGACAGAAAATGCTAGTTT 59.420 37.500 0.00 0.00 40.62 2.66
2530 4223 4.913924 GTGCAGACAGAAAATGCTAGTTTG 59.086 41.667 0.00 0.00 40.62 2.93
2531 4224 3.916776 GCAGACAGAAAATGCTAGTTTGC 59.083 43.478 0.00 0.00 37.00 3.68
2532 4225 6.947562 TGCAGACAGAAAATGCTAGTTTGCA 61.948 40.000 5.18 5.18 44.54 4.08
2539 4232 2.470156 TGCTAGTTTGCATCGGCTG 58.530 52.632 0.00 0.00 41.91 4.85
2540 4233 1.026182 TGCTAGTTTGCATCGGCTGG 61.026 55.000 0.00 0.00 41.91 4.85
2541 4234 1.723870 CTAGTTTGCATCGGCTGGC 59.276 57.895 0.00 0.00 41.91 4.85
2542 4235 0.745845 CTAGTTTGCATCGGCTGGCT 60.746 55.000 0.00 0.00 41.91 4.75
2543 4236 0.322456 TAGTTTGCATCGGCTGGCTT 60.322 50.000 0.00 0.00 41.91 4.35
2544 4237 1.153958 GTTTGCATCGGCTGGCTTC 60.154 57.895 0.00 0.00 41.91 3.86
2545 4238 1.603171 TTTGCATCGGCTGGCTTCA 60.603 52.632 0.00 0.00 41.91 3.02
2546 4239 1.588824 TTTGCATCGGCTGGCTTCAG 61.589 55.000 0.00 0.00 41.91 3.02
2557 4250 0.599558 TGGCTTCAGCAAATGCACTC 59.400 50.000 8.28 0.00 45.16 3.51
2562 4255 3.367025 GCTTCAGCAAATGCACTCAAATC 59.633 43.478 8.28 0.00 45.16 2.17
2571 4264 1.881973 TGCACTCAAATCTGCTCAACC 59.118 47.619 0.00 0.00 34.29 3.77
2588 4281 3.313874 CGAAGGGCCTGATCCACT 58.686 61.111 6.92 0.00 0.00 4.00
2593 4288 0.030297 AGGGCCTGATCCACTCTCAT 60.030 55.000 4.50 0.00 0.00 2.90
2600 4295 3.387374 CCTGATCCACTCTCATAGTTGCT 59.613 47.826 0.00 0.00 35.76 3.91
2604 4299 5.835280 TGATCCACTCTCATAGTTGCTATGA 59.165 40.000 15.43 15.43 46.98 2.15
2621 4316 4.752101 GCTATGACCTACTGCTGTTAATGG 59.248 45.833 0.09 2.78 0.00 3.16
2624 4319 3.780294 TGACCTACTGCTGTTAATGGGAT 59.220 43.478 0.09 0.00 0.00 3.85
2627 4322 4.018415 ACCTACTGCTGTTAATGGGATGTT 60.018 41.667 0.09 0.00 0.00 2.71
2644 4339 5.335426 GGGATGTTAACTGCATGCTGATATG 60.335 44.000 28.74 10.01 35.45 1.78
2656 4351 4.508551 TGCTGATATGTCCTTTGATGGT 57.491 40.909 0.00 0.00 0.00 3.55
2660 4355 4.780815 TGATATGTCCTTTGATGGTCCAC 58.219 43.478 0.00 0.00 0.00 4.02
2662 4357 0.036164 TGTCCTTTGATGGTCCACGG 59.964 55.000 0.00 0.00 0.00 4.94
2668 4363 3.055675 CCTTTGATGGTCCACGGTAGTTA 60.056 47.826 0.00 0.00 0.00 2.24
2687 4382 1.538047 ATTGGACTGCACACCATGTC 58.462 50.000 7.77 0.90 36.02 3.06
2688 4383 0.182299 TTGGACTGCACACCATGTCA 59.818 50.000 7.77 0.00 36.02 3.58
2705 4400 5.413833 CCATGTCAGTAAATTGTCTGCTTCT 59.586 40.000 5.57 0.00 0.00 2.85
2711 4406 8.940952 GTCAGTAAATTGTCTGCTTCTATTTCT 58.059 33.333 5.57 0.00 0.00 2.52
2719 4414 6.166279 TGTCTGCTTCTATTTCTGTTACAGG 58.834 40.000 12.79 0.00 31.51 4.00
2736 4432 0.856982 AGGGGTTGGTGTGATTGGAA 59.143 50.000 0.00 0.00 0.00 3.53
2740 4436 2.231235 GGGTTGGTGTGATTGGAACATC 59.769 50.000 0.00 0.00 39.30 3.06
2742 4438 3.573967 GGTTGGTGTGATTGGAACATCTT 59.426 43.478 0.00 0.00 39.30 2.40
2743 4439 4.549458 GTTGGTGTGATTGGAACATCTTG 58.451 43.478 0.00 0.00 39.30 3.02
2744 4440 3.156293 TGGTGTGATTGGAACATCTTGG 58.844 45.455 0.00 0.00 39.30 3.61
2745 4441 3.157087 GGTGTGATTGGAACATCTTGGT 58.843 45.455 0.00 0.00 39.30 3.67
2746 4442 3.573967 GGTGTGATTGGAACATCTTGGTT 59.426 43.478 0.00 0.00 39.30 3.67
2748 4444 5.453198 GGTGTGATTGGAACATCTTGGTTTT 60.453 40.000 0.00 0.00 39.30 2.43
2749 4445 5.463061 GTGTGATTGGAACATCTTGGTTTTG 59.537 40.000 0.00 0.00 39.30 2.44
2750 4446 5.362143 TGTGATTGGAACATCTTGGTTTTGA 59.638 36.000 0.00 0.00 39.30 2.69
2751 4447 6.127225 TGTGATTGGAACATCTTGGTTTTGAA 60.127 34.615 0.00 0.00 39.30 2.69
2752 4448 6.930722 GTGATTGGAACATCTTGGTTTTGAAT 59.069 34.615 0.00 0.00 39.30 2.57
2753 4449 6.930164 TGATTGGAACATCTTGGTTTTGAATG 59.070 34.615 0.00 0.00 39.30 2.67
2754 4450 5.867903 TGGAACATCTTGGTTTTGAATGT 57.132 34.783 0.00 0.00 0.00 2.71
2755 4451 6.232581 TGGAACATCTTGGTTTTGAATGTT 57.767 33.333 0.00 0.00 34.03 2.71
2756 4452 7.353414 TGGAACATCTTGGTTTTGAATGTTA 57.647 32.000 0.00 0.00 31.85 2.41
2757 4453 7.786030 TGGAACATCTTGGTTTTGAATGTTAA 58.214 30.769 0.00 0.00 31.85 2.01
2758 4454 8.428063 TGGAACATCTTGGTTTTGAATGTTAAT 58.572 29.630 0.00 0.00 31.85 1.40
2759 4455 8.711457 GGAACATCTTGGTTTTGAATGTTAATG 58.289 33.333 0.00 0.00 31.85 1.90
2762 4458 5.226396 TCTTGGTTTTGAATGTTAATGCCG 58.774 37.500 0.00 0.00 0.00 5.69
2765 4461 4.279671 TGGTTTTGAATGTTAATGCCGTCT 59.720 37.500 0.00 0.00 0.00 4.18
2766 4462 5.473846 TGGTTTTGAATGTTAATGCCGTCTA 59.526 36.000 0.00 0.00 0.00 2.59
2767 4463 6.151985 TGGTTTTGAATGTTAATGCCGTCTAT 59.848 34.615 0.00 0.00 0.00 1.98
2768 4464 7.033185 GGTTTTGAATGTTAATGCCGTCTATT 58.967 34.615 0.00 0.00 0.00 1.73
2769 4465 7.220108 GGTTTTGAATGTTAATGCCGTCTATTC 59.780 37.037 0.00 0.00 0.00 1.75
2770 4466 6.993786 TTGAATGTTAATGCCGTCTATTCA 57.006 33.333 0.00 0.00 32.94 2.57
2771 4467 7.566760 TTGAATGTTAATGCCGTCTATTCAT 57.433 32.000 0.00 0.00 34.31 2.57
2772 4468 6.958255 TGAATGTTAATGCCGTCTATTCATG 58.042 36.000 0.00 0.00 30.67 3.07
2773 4469 5.947228 ATGTTAATGCCGTCTATTCATGG 57.053 39.130 0.00 0.00 0.00 3.66
2774 4470 4.776349 TGTTAATGCCGTCTATTCATGGT 58.224 39.130 0.00 0.00 0.00 3.55
2775 4471 4.574421 TGTTAATGCCGTCTATTCATGGTG 59.426 41.667 0.00 0.00 0.00 4.17
2776 4472 3.558931 AATGCCGTCTATTCATGGTGA 57.441 42.857 0.00 0.00 0.00 4.02
2777 4473 3.777106 ATGCCGTCTATTCATGGTGAT 57.223 42.857 0.00 0.00 0.00 3.06
2778 4474 2.837498 TGCCGTCTATTCATGGTGATG 58.163 47.619 0.00 0.00 0.00 3.07
2779 4475 1.532868 GCCGTCTATTCATGGTGATGC 59.467 52.381 0.00 0.00 0.00 3.91
2780 4476 2.837498 CCGTCTATTCATGGTGATGCA 58.163 47.619 0.00 0.00 0.00 3.96
2781 4477 3.405831 CCGTCTATTCATGGTGATGCAT 58.594 45.455 0.00 0.00 0.00 3.96
2782 4478 3.187842 CCGTCTATTCATGGTGATGCATG 59.812 47.826 2.46 0.00 0.00 4.06
2811 4507 3.228188 TGGTGAGAGCATCAAACCTTT 57.772 42.857 0.00 0.00 41.76 3.11
2815 4511 4.702131 GGTGAGAGCATCAAACCTTTGTAT 59.298 41.667 0.00 0.00 40.43 2.29
2824 4520 3.003897 TCAAACCTTTGTATCCGTTGTGC 59.996 43.478 0.00 0.00 39.18 4.57
2842 4538 2.094234 GTGCCTTGTGACTGTTGGTTTT 60.094 45.455 0.00 0.00 0.00 2.43
2843 4539 2.094286 TGCCTTGTGACTGTTGGTTTTG 60.094 45.455 0.00 0.00 0.00 2.44
2890 4602 3.882444 CTTGATCCATCTGCCTTCTTCA 58.118 45.455 0.00 0.00 0.00 3.02
2892 4604 2.573009 TGATCCATCTGCCTTCTTCACA 59.427 45.455 0.00 0.00 0.00 3.58
2915 4627 2.993937 TCCGTTTGGAGTGTTTCTTGT 58.006 42.857 0.00 0.00 40.17 3.16
2920 4632 4.557301 CGTTTGGAGTGTTTCTTGTTGTTC 59.443 41.667 0.00 0.00 0.00 3.18
2940 4652 7.716799 TGTTCCTATTCAGTGCCATTTATTT 57.283 32.000 0.00 0.00 0.00 1.40
2941 4653 7.771183 TGTTCCTATTCAGTGCCATTTATTTC 58.229 34.615 0.00 0.00 0.00 2.17
2942 4654 6.618287 TCCTATTCAGTGCCATTTATTTCG 57.382 37.500 0.00 0.00 0.00 3.46
2943 4655 6.119536 TCCTATTCAGTGCCATTTATTTCGT 58.880 36.000 0.00 0.00 0.00 3.85
2944 4656 6.601613 TCCTATTCAGTGCCATTTATTTCGTT 59.398 34.615 0.00 0.00 0.00 3.85
2945 4657 7.122055 TCCTATTCAGTGCCATTTATTTCGTTT 59.878 33.333 0.00 0.00 0.00 3.60
2946 4658 7.432252 CCTATTCAGTGCCATTTATTTCGTTTC 59.568 37.037 0.00 0.00 0.00 2.78
2947 4659 5.697473 TCAGTGCCATTTATTTCGTTTCA 57.303 34.783 0.00 0.00 0.00 2.69
2948 4660 6.266168 TCAGTGCCATTTATTTCGTTTCAT 57.734 33.333 0.00 0.00 0.00 2.57
2949 4661 6.092092 TCAGTGCCATTTATTTCGTTTCATG 58.908 36.000 0.00 0.00 0.00 3.07
2950 4662 5.863397 CAGTGCCATTTATTTCGTTTCATGT 59.137 36.000 0.00 0.00 0.00 3.21
2951 4663 5.863397 AGTGCCATTTATTTCGTTTCATGTG 59.137 36.000 0.00 0.00 0.00 3.21
2952 4664 5.062058 GTGCCATTTATTTCGTTTCATGTGG 59.938 40.000 0.00 0.00 0.00 4.17
2953 4665 4.566360 GCCATTTATTTCGTTTCATGTGGG 59.434 41.667 0.00 0.00 0.00 4.61
2954 4666 5.623368 GCCATTTATTTCGTTTCATGTGGGA 60.623 40.000 0.00 0.00 0.00 4.37
2955 4667 5.804979 CCATTTATTTCGTTTCATGTGGGAC 59.195 40.000 0.00 0.00 0.00 4.46
2956 4668 6.350110 CCATTTATTTCGTTTCATGTGGGACT 60.350 38.462 0.00 0.00 0.00 3.85
2957 4669 7.148154 CCATTTATTTCGTTTCATGTGGGACTA 60.148 37.037 0.00 0.00 0.00 2.59
2958 4670 7.931578 TTTATTTCGTTTCATGTGGGACTAT 57.068 32.000 0.00 0.00 0.00 2.12
2959 4671 7.931578 TTATTTCGTTTCATGTGGGACTATT 57.068 32.000 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.467384 AAGATCCACCATCTCGCCAG 59.533 55.000 0.00 0.00 41.47 4.85
1 2 0.911769 AAAGATCCACCATCTCGCCA 59.088 50.000 0.00 0.00 41.47 5.69
2 3 2.910688 TAAAGATCCACCATCTCGCC 57.089 50.000 0.00 0.00 41.47 5.54
3 4 4.876107 TCTTTTAAAGATCCACCATCTCGC 59.124 41.667 2.94 0.00 41.47 5.03
15 16 8.560374 GCGTTAGCTAATGGATCTTTTAAAGAT 58.440 33.333 23.78 18.79 44.80 2.40
16 17 7.254319 CGCGTTAGCTAATGGATCTTTTAAAGA 60.254 37.037 23.78 9.99 40.92 2.52
17 18 6.846283 CGCGTTAGCTAATGGATCTTTTAAAG 59.154 38.462 23.78 0.00 42.32 1.85
18 19 6.314400 ACGCGTTAGCTAATGGATCTTTTAAA 59.686 34.615 23.78 0.00 42.32 1.52
19 20 5.813672 ACGCGTTAGCTAATGGATCTTTTAA 59.186 36.000 23.78 0.00 42.32 1.52
20 21 5.353938 ACGCGTTAGCTAATGGATCTTTTA 58.646 37.500 23.78 0.00 42.32 1.52
21 22 4.189231 ACGCGTTAGCTAATGGATCTTTT 58.811 39.130 23.78 0.00 42.32 2.27
22 23 3.793559 ACGCGTTAGCTAATGGATCTTT 58.206 40.909 23.78 0.00 42.32 2.52
23 24 3.454371 ACGCGTTAGCTAATGGATCTT 57.546 42.857 23.78 2.16 42.32 2.40
24 25 4.202080 TGTTACGCGTTAGCTAATGGATCT 60.202 41.667 20.78 4.97 42.32 2.75
25 26 4.046462 TGTTACGCGTTAGCTAATGGATC 58.954 43.478 20.78 9.19 42.32 3.36
26 27 4.049546 TGTTACGCGTTAGCTAATGGAT 57.950 40.909 20.78 7.88 42.32 3.41
27 28 3.507103 TGTTACGCGTTAGCTAATGGA 57.493 42.857 20.78 6.06 42.32 3.41
28 29 3.183775 GGATGTTACGCGTTAGCTAATGG 59.816 47.826 20.78 16.75 42.32 3.16
29 30 3.183775 GGGATGTTACGCGTTAGCTAATG 59.816 47.826 20.78 19.51 42.32 1.90
30 31 3.387397 GGGATGTTACGCGTTAGCTAAT 58.613 45.455 20.78 2.93 42.32 1.73
31 32 2.481795 GGGGATGTTACGCGTTAGCTAA 60.482 50.000 20.78 0.96 42.32 3.09
32 33 1.067516 GGGGATGTTACGCGTTAGCTA 59.932 52.381 20.78 0.00 42.32 3.32
33 34 0.179092 GGGGATGTTACGCGTTAGCT 60.179 55.000 20.78 0.00 42.32 3.32
34 35 0.460635 TGGGGATGTTACGCGTTAGC 60.461 55.000 20.78 7.36 40.74 3.09
35 36 2.234300 ATGGGGATGTTACGCGTTAG 57.766 50.000 20.78 0.00 0.00 2.34
36 37 3.815856 TTATGGGGATGTTACGCGTTA 57.184 42.857 20.78 5.00 0.00 3.18
37 38 2.695127 TTATGGGGATGTTACGCGTT 57.305 45.000 20.78 0.00 0.00 4.84
38 39 2.695127 TTTATGGGGATGTTACGCGT 57.305 45.000 19.17 19.17 0.00 6.01
39 40 5.445845 GTTTATTTATGGGGATGTTACGCG 58.554 41.667 3.53 3.53 0.00 6.01
40 41 5.445845 CGTTTATTTATGGGGATGTTACGC 58.554 41.667 0.00 0.00 0.00 4.42
41 42 5.528320 ACCGTTTATTTATGGGGATGTTACG 59.472 40.000 0.00 0.00 0.00 3.18
42 43 6.319405 ACACCGTTTATTTATGGGGATGTTAC 59.681 38.462 0.00 0.00 31.70 2.50
43 44 6.319152 CACACCGTTTATTTATGGGGATGTTA 59.681 38.462 0.00 0.00 31.70 2.41
44 45 5.126384 CACACCGTTTATTTATGGGGATGTT 59.874 40.000 0.00 0.00 31.70 2.71
45 46 4.642885 CACACCGTTTATTTATGGGGATGT 59.357 41.667 0.00 0.00 31.70 3.06
46 47 4.037446 CCACACCGTTTATTTATGGGGATG 59.963 45.833 0.00 0.00 35.76 3.51
47 48 4.211920 CCACACCGTTTATTTATGGGGAT 58.788 43.478 0.00 0.00 35.76 3.85
48 49 3.010361 ACCACACCGTTTATTTATGGGGA 59.990 43.478 0.00 0.00 35.76 4.81
49 50 3.358118 ACCACACCGTTTATTTATGGGG 58.642 45.455 0.00 0.00 39.90 4.96
50 51 5.648960 ACTAACCACACCGTTTATTTATGGG 59.351 40.000 0.00 0.00 0.00 4.00
51 52 6.596497 AGACTAACCACACCGTTTATTTATGG 59.404 38.462 0.00 0.00 0.00 2.74
52 53 7.605410 AGACTAACCACACCGTTTATTTATG 57.395 36.000 0.00 0.00 0.00 1.90
53 54 9.723601 TTTAGACTAACCACACCGTTTATTTAT 57.276 29.630 0.00 0.00 0.00 1.40
54 55 9.553064 TTTTAGACTAACCACACCGTTTATTTA 57.447 29.630 0.00 0.00 0.00 1.40
55 56 8.449251 TTTTAGACTAACCACACCGTTTATTT 57.551 30.769 0.00 0.00 0.00 1.40
56 57 8.625786 ATTTTAGACTAACCACACCGTTTATT 57.374 30.769 0.00 0.00 0.00 1.40
57 58 9.723601 TTATTTTAGACTAACCACACCGTTTAT 57.276 29.630 0.00 0.00 0.00 1.40
58 59 9.553064 TTTATTTTAGACTAACCACACCGTTTA 57.447 29.630 0.00 0.00 0.00 2.01
59 60 8.449251 TTTATTTTAGACTAACCACACCGTTT 57.551 30.769 0.00 0.00 0.00 3.60
60 61 8.344831 GTTTTATTTTAGACTAACCACACCGTT 58.655 33.333 0.00 0.00 0.00 4.44
61 62 7.498570 TGTTTTATTTTAGACTAACCACACCGT 59.501 33.333 0.00 0.00 0.00 4.83
62 63 7.863666 TGTTTTATTTTAGACTAACCACACCG 58.136 34.615 0.00 0.00 0.00 4.94
86 87 7.175990 ACAAACCCTGTAAACAACATACCTATG 59.824 37.037 0.00 0.00 37.50 2.23
87 88 7.235804 ACAAACCCTGTAAACAACATACCTAT 58.764 34.615 0.00 0.00 37.50 2.57
88 89 6.603224 ACAAACCCTGTAAACAACATACCTA 58.397 36.000 0.00 0.00 37.50 3.08
89 90 5.451354 ACAAACCCTGTAAACAACATACCT 58.549 37.500 0.00 0.00 37.50 3.08
90 91 5.777850 ACAAACCCTGTAAACAACATACC 57.222 39.130 0.00 0.00 37.50 2.73
91 92 6.569035 GCCTACAAACCCTGTAAACAACATAC 60.569 42.308 0.00 0.00 40.06 2.39
92 93 5.474189 GCCTACAAACCCTGTAAACAACATA 59.526 40.000 0.00 0.00 40.06 2.29
93 94 4.279922 GCCTACAAACCCTGTAAACAACAT 59.720 41.667 0.00 0.00 40.06 2.71
94 95 3.633065 GCCTACAAACCCTGTAAACAACA 59.367 43.478 0.00 0.00 40.06 3.33
95 96 3.633065 TGCCTACAAACCCTGTAAACAAC 59.367 43.478 0.00 0.00 40.06 3.32
96 97 3.633065 GTGCCTACAAACCCTGTAAACAA 59.367 43.478 0.00 0.00 40.06 2.83
97 98 3.215975 GTGCCTACAAACCCTGTAAACA 58.784 45.455 0.00 0.00 40.06 2.83
98 99 3.004002 GTGTGCCTACAAACCCTGTAAAC 59.996 47.826 0.00 0.00 40.06 2.01
99 100 3.117813 AGTGTGCCTACAAACCCTGTAAA 60.118 43.478 0.00 0.00 40.06 2.01
100 101 2.440253 AGTGTGCCTACAAACCCTGTAA 59.560 45.455 0.00 0.00 40.06 2.41
101 102 2.051692 AGTGTGCCTACAAACCCTGTA 58.948 47.619 0.00 0.00 39.64 2.74
102 103 0.843984 AGTGTGCCTACAAACCCTGT 59.156 50.000 0.00 0.00 42.47 4.00
103 104 1.238439 CAGTGTGCCTACAAACCCTG 58.762 55.000 0.00 0.00 38.82 4.45
104 105 0.843984 ACAGTGTGCCTACAAACCCT 59.156 50.000 0.00 0.00 38.82 4.34
105 106 1.687563 AACAGTGTGCCTACAAACCC 58.312 50.000 0.00 0.00 38.82 4.11
106 107 4.337274 ACTTTAACAGTGTGCCTACAAACC 59.663 41.667 0.00 0.00 38.82 3.27
107 108 5.494632 ACTTTAACAGTGTGCCTACAAAC 57.505 39.130 0.00 0.00 38.82 2.93
108 109 5.416326 ACAACTTTAACAGTGTGCCTACAAA 59.584 36.000 0.00 0.00 38.82 2.83
109 110 4.944930 ACAACTTTAACAGTGTGCCTACAA 59.055 37.500 0.00 0.00 38.82 2.41
110 111 4.519213 ACAACTTTAACAGTGTGCCTACA 58.481 39.130 0.00 0.00 35.12 2.74
111 112 6.607735 TTACAACTTTAACAGTGTGCCTAC 57.392 37.500 0.00 0.00 35.12 3.18
112 113 7.627298 TTTTACAACTTTAACAGTGTGCCTA 57.373 32.000 0.00 0.00 35.12 3.93
113 114 6.518208 TTTTACAACTTTAACAGTGTGCCT 57.482 33.333 0.00 0.00 35.12 4.75
114 115 7.764695 ATTTTTACAACTTTAACAGTGTGCC 57.235 32.000 0.00 0.00 35.12 5.01
115 116 9.511144 AGTATTTTTACAACTTTAACAGTGTGC 57.489 29.630 0.00 0.00 35.12 4.57
182 183 9.566432 GGAGAAATGGATGTATCTAGATGTTTT 57.434 33.333 15.79 4.70 0.00 2.43
183 184 7.875041 CGGAGAAATGGATGTATCTAGATGTTT 59.125 37.037 15.79 5.09 0.00 2.83
184 185 7.015682 ACGGAGAAATGGATGTATCTAGATGTT 59.984 37.037 15.79 0.00 0.00 2.71
185 186 6.495181 ACGGAGAAATGGATGTATCTAGATGT 59.505 38.462 15.79 1.25 0.00 3.06
186 187 6.929625 ACGGAGAAATGGATGTATCTAGATG 58.070 40.000 15.79 0.00 0.00 2.90
187 188 6.721668 TGACGGAGAAATGGATGTATCTAGAT 59.278 38.462 10.73 10.73 0.00 1.98
188 189 6.068670 TGACGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
189 190 6.332735 TGACGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
190 191 6.323996 AGTTGACGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
191 192 5.129485 AGTTGACGGAGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
192 193 5.360591 AGTTGACGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
193 194 5.359194 AGTTGACGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
194 195 4.819105 AGTTGACGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
195 196 3.703001 AGTTGACGGAGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
196 197 6.238484 GGAAATAGTTGACGGAGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
197 198 5.823045 GGAAATAGTTGACGGAGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
198 199 5.183228 GGAAATAGTTGACGGAGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
199 200 4.034048 CGGAAATAGTTGACGGAGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
200 201 5.143916 CGGAAATAGTTGACGGAGAAATG 57.856 43.478 0.00 0.00 0.00 2.32
208 209 1.135315 TCCGACCGGAAATAGTTGACG 60.135 52.381 9.46 0.00 42.05 4.35
209 210 2.165030 TCTCCGACCGGAAATAGTTGAC 59.835 50.000 9.46 0.00 44.66 3.18
210 211 2.426024 CTCTCCGACCGGAAATAGTTGA 59.574 50.000 9.46 3.74 44.66 3.18
211 212 2.426024 TCTCTCCGACCGGAAATAGTTG 59.574 50.000 9.46 0.00 44.66 3.16
212 213 2.688958 CTCTCTCCGACCGGAAATAGTT 59.311 50.000 9.46 0.00 44.66 2.24
213 214 2.299521 CTCTCTCCGACCGGAAATAGT 58.700 52.381 9.46 0.00 44.66 2.12
214 215 2.299521 ACTCTCTCCGACCGGAAATAG 58.700 52.381 9.46 11.18 44.66 1.73
215 216 2.431954 ACTCTCTCCGACCGGAAATA 57.568 50.000 9.46 0.77 44.66 1.40
216 217 2.022934 GTACTCTCTCCGACCGGAAAT 58.977 52.381 9.46 0.00 44.66 2.17
217 218 1.271543 TGTACTCTCTCCGACCGGAAA 60.272 52.381 9.46 0.00 44.66 3.13
218 219 0.325933 TGTACTCTCTCCGACCGGAA 59.674 55.000 9.46 3.39 44.66 4.30
219 220 0.325933 TTGTACTCTCTCCGACCGGA 59.674 55.000 9.46 10.97 42.90 5.14
220 221 1.171308 TTTGTACTCTCTCCGACCGG 58.829 55.000 0.00 0.00 0.00 5.28
221 222 3.505464 ATTTTGTACTCTCTCCGACCG 57.495 47.619 0.00 0.00 0.00 4.79
222 223 4.159135 TGGTATTTTGTACTCTCTCCGACC 59.841 45.833 0.00 0.00 0.00 4.79
223 224 5.320549 TGGTATTTTGTACTCTCTCCGAC 57.679 43.478 0.00 0.00 0.00 4.79
224 225 5.988310 TTGGTATTTTGTACTCTCTCCGA 57.012 39.130 0.00 0.00 0.00 4.55
225 226 5.061808 CGTTTGGTATTTTGTACTCTCTCCG 59.938 44.000 0.00 0.00 0.00 4.63
226 227 5.350640 CCGTTTGGTATTTTGTACTCTCTCC 59.649 44.000 0.00 0.00 0.00 3.71
227 228 6.161381 TCCGTTTGGTATTTTGTACTCTCTC 58.839 40.000 0.00 0.00 36.30 3.20
228 229 6.105397 TCCGTTTGGTATTTTGTACTCTCT 57.895 37.500 0.00 0.00 36.30 3.10
229 230 6.790285 TTCCGTTTGGTATTTTGTACTCTC 57.210 37.500 0.00 0.00 36.30 3.20
230 231 7.571080 TTTTCCGTTTGGTATTTTGTACTCT 57.429 32.000 0.00 0.00 36.30 3.24
231 232 7.380333 CCTTTTTCCGTTTGGTATTTTGTACTC 59.620 37.037 0.00 0.00 36.30 2.59
232 233 7.068470 TCCTTTTTCCGTTTGGTATTTTGTACT 59.932 33.333 0.00 0.00 36.30 2.73
233 234 7.201835 TCCTTTTTCCGTTTGGTATTTTGTAC 58.798 34.615 0.00 0.00 36.30 2.90
234 235 7.344095 TCCTTTTTCCGTTTGGTATTTTGTA 57.656 32.000 0.00 0.00 36.30 2.41
235 236 6.223351 TCCTTTTTCCGTTTGGTATTTTGT 57.777 33.333 0.00 0.00 36.30 2.83
236 237 7.722795 AATCCTTTTTCCGTTTGGTATTTTG 57.277 32.000 0.00 0.00 36.30 2.44
242 243 9.031537 AGAAATATAATCCTTTTTCCGTTTGGT 57.968 29.630 0.00 0.00 36.30 3.67
243 244 9.869757 AAGAAATATAATCCTTTTTCCGTTTGG 57.130 29.630 0.00 0.00 0.00 3.28
263 264 9.869757 GTGCCCTTGTATAATAACAAAAGAAAT 57.130 29.630 0.00 0.00 38.81 2.17
264 265 9.084533 AGTGCCCTTGTATAATAACAAAAGAAA 57.915 29.630 0.00 0.00 38.81 2.52
265 266 8.644374 AGTGCCCTTGTATAATAACAAAAGAA 57.356 30.769 0.00 0.00 38.81 2.52
266 267 8.644374 AAGTGCCCTTGTATAATAACAAAAGA 57.356 30.769 0.00 0.00 38.81 2.52
267 268 9.705290 AAAAGTGCCCTTGTATAATAACAAAAG 57.295 29.630 0.00 0.00 38.81 2.27
294 295 9.729281 ACCGAGGTTATAAGTCTAAATTTTGAA 57.271 29.630 3.84 0.00 0.00 2.69
295 296 9.374838 GACCGAGGTTATAAGTCTAAATTTTGA 57.625 33.333 0.00 0.00 0.00 2.69
296 297 9.158233 TGACCGAGGTTATAAGTCTAAATTTTG 57.842 33.333 0.00 0.00 0.00 2.44
297 298 9.729281 TTGACCGAGGTTATAAGTCTAAATTTT 57.271 29.630 0.00 0.00 0.00 1.82
298 299 9.729281 TTTGACCGAGGTTATAAGTCTAAATTT 57.271 29.630 0.00 0.00 0.00 1.82
299 300 9.729281 TTTTGACCGAGGTTATAAGTCTAAATT 57.271 29.630 0.00 0.00 30.84 1.82
300 301 9.729281 TTTTTGACCGAGGTTATAAGTCTAAAT 57.271 29.630 10.11 0.00 34.09 1.40
360 361 9.269453 TGAATGCACATTTCAAATAATTTGTCA 57.731 25.926 0.00 0.00 41.36 3.58
365 366 9.562583 GCAATTGAATGCACATTTCAAATAATT 57.437 25.926 15.77 5.39 45.70 1.40
380 381 6.251801 GCCACAAAAATTATGCAATTGAATGC 59.748 34.615 10.34 0.00 46.58 3.56
381 382 7.306213 TGCCACAAAAATTATGCAATTGAATG 58.694 30.769 10.34 0.00 34.53 2.67
382 383 7.450124 TGCCACAAAAATTATGCAATTGAAT 57.550 28.000 10.34 6.94 34.53 2.57
383 384 6.872628 TGCCACAAAAATTATGCAATTGAA 57.127 29.167 10.34 0.00 34.53 2.69
384 385 8.734218 ATATGCCACAAAAATTATGCAATTGA 57.266 26.923 10.34 0.00 34.53 2.57
387 388 9.835389 AGTTATATGCCACAAAAATTATGCAAT 57.165 25.926 0.00 0.00 31.81 3.56
388 389 9.311916 GAGTTATATGCCACAAAAATTATGCAA 57.688 29.630 0.00 0.00 31.81 4.08
389 390 8.473219 TGAGTTATATGCCACAAAAATTATGCA 58.527 29.630 0.00 0.00 0.00 3.96
390 391 8.870160 TGAGTTATATGCCACAAAAATTATGC 57.130 30.769 0.00 0.00 0.00 3.14
467 468 8.800332 TGTACTTCCTCGTTCTATACTTTCTTT 58.200 33.333 0.00 0.00 0.00 2.52
468 469 8.345724 TGTACTTCCTCGTTCTATACTTTCTT 57.654 34.615 0.00 0.00 0.00 2.52
469 470 7.934855 TGTACTTCCTCGTTCTATACTTTCT 57.065 36.000 0.00 0.00 0.00 2.52
470 471 8.025445 TGTTGTACTTCCTCGTTCTATACTTTC 58.975 37.037 0.00 0.00 0.00 2.62
471 472 7.889469 TGTTGTACTTCCTCGTTCTATACTTT 58.111 34.615 0.00 0.00 0.00 2.66
472 473 7.458409 TGTTGTACTTCCTCGTTCTATACTT 57.542 36.000 0.00 0.00 0.00 2.24
473 474 7.201803 GGATGTTGTACTTCCTCGTTCTATACT 60.202 40.741 0.00 0.00 38.85 2.12
474 475 6.916932 GGATGTTGTACTTCCTCGTTCTATAC 59.083 42.308 0.00 0.00 38.85 1.47
475 476 6.238566 CGGATGTTGTACTTCCTCGTTCTATA 60.239 42.308 9.28 0.00 39.51 1.31
476 477 5.450137 CGGATGTTGTACTTCCTCGTTCTAT 60.450 44.000 9.28 0.00 39.51 1.98
477 478 4.142534 CGGATGTTGTACTTCCTCGTTCTA 60.143 45.833 9.28 0.00 39.51 2.10
478 479 3.367087 CGGATGTTGTACTTCCTCGTTCT 60.367 47.826 9.28 0.00 39.51 3.01
479 480 2.921754 CGGATGTTGTACTTCCTCGTTC 59.078 50.000 9.28 0.00 39.51 3.95
480 481 2.298163 ACGGATGTTGTACTTCCTCGTT 59.702 45.455 9.28 0.00 39.51 3.85
481 482 1.891150 ACGGATGTTGTACTTCCTCGT 59.109 47.619 9.28 0.00 39.51 4.18
482 483 2.649331 ACGGATGTTGTACTTCCTCG 57.351 50.000 9.28 0.00 39.51 4.63
511 513 6.580791 CACAAACACGAATCGGATGTTTATTT 59.419 34.615 19.12 8.26 43.02 1.40
539 541 5.793675 TCGTATAGTTTCGAAAGAGAGACG 58.206 41.667 19.63 19.63 43.69 4.18
587 591 2.526873 ACGGGACAGAAGGCTGGT 60.527 61.111 0.00 0.00 46.60 4.00
588 592 2.266055 GACGGGACAGAAGGCTGG 59.734 66.667 0.00 0.00 46.60 4.85
637 641 2.102553 GCTACACGAGGAGGCGAC 59.897 66.667 0.00 0.00 34.83 5.19
638 642 3.138798 GGCTACACGAGGAGGCGA 61.139 66.667 2.23 0.00 34.83 5.54
687 696 4.593864 GAGATCCGCGGGCAGGAC 62.594 72.222 27.83 10.38 41.10 3.85
712 721 3.862991 GGGCTCTACGGGGAAGGC 61.863 72.222 0.00 0.00 0.00 4.35
766 775 3.257561 CGGCGGATTGAGTGCTCG 61.258 66.667 0.00 0.00 0.00 5.03
788 797 0.683504 GAGGACGGAGCCTTACCTGA 60.684 60.000 0.00 0.00 38.73 3.86
855 864 1.057822 CGCTTGATGAAGTCGCACG 59.942 57.895 0.00 0.00 0.00 5.34
860 869 1.933247 AGCTAGCGCTTGATGAAGTC 58.067 50.000 23.12 6.06 46.47 3.01
884 893 1.151450 CCCCCATCCATCCCGAAAG 59.849 63.158 0.00 0.00 0.00 2.62
892 901 2.084300 TTCATCCGCCCCCATCCAT 61.084 57.895 0.00 0.00 0.00 3.41
918 1099 5.105392 TGACAGGCAACAACTTTGATTTTCT 60.105 36.000 0.00 0.00 41.41 2.52
984 1165 0.165944 CCATCGAGAAACCAACGTGC 59.834 55.000 0.00 0.00 0.00 5.34
987 1168 1.359848 CCTCCATCGAGAAACCAACG 58.640 55.000 0.00 0.00 38.52 4.10
988 1169 1.087501 GCCTCCATCGAGAAACCAAC 58.912 55.000 0.00 0.00 38.52 3.77
1014 1195 0.618968 AGGTTCCTTCCTGCCTCGAT 60.619 55.000 0.00 0.00 36.35 3.59
1021 1202 2.806945 TGCCAATAGGTTCCTTCCTG 57.193 50.000 0.00 0.00 38.41 3.86
1035 1216 1.184431 CAGTACCATGCCAATGCCAA 58.816 50.000 0.00 0.00 36.33 4.52
1044 1225 1.227973 GGCTAGGGCAGTACCATGC 60.228 63.158 0.00 0.00 45.74 4.06
1070 1251 6.093909 TGCAAAATCTGGTGATACTGTACATG 59.906 38.462 0.00 0.00 31.70 3.21
1076 1257 4.460382 AGGTTGCAAAATCTGGTGATACTG 59.540 41.667 0.00 0.00 31.70 2.74
1077 1258 4.666512 AGGTTGCAAAATCTGGTGATACT 58.333 39.130 0.00 0.00 31.70 2.12
1085 1266 5.046910 ACGACATAAGGTTGCAAAATCTG 57.953 39.130 0.00 0.00 33.88 2.90
1101 1286 2.290641 GGCAACAAAAGACAGACGACAT 59.709 45.455 0.00 0.00 0.00 3.06
1103 1288 2.384899 GGCAACAAAAGACAGACGAC 57.615 50.000 0.00 0.00 0.00 4.34
1161 1369 7.446931 TCAAACAGAGCCTACATTGTTTCATTA 59.553 33.333 0.00 0.00 40.62 1.90
1162 1370 6.265196 TCAAACAGAGCCTACATTGTTTCATT 59.735 34.615 0.00 0.00 40.62 2.57
1163 1371 5.769662 TCAAACAGAGCCTACATTGTTTCAT 59.230 36.000 0.00 0.00 40.62 2.57
1164 1372 5.129634 TCAAACAGAGCCTACATTGTTTCA 58.870 37.500 0.00 0.00 40.62 2.69
1165 1373 5.689383 TCAAACAGAGCCTACATTGTTTC 57.311 39.130 0.00 0.00 40.62 2.78
1200 1410 3.003068 GCTGTGATGTCATGGAATGCTAC 59.997 47.826 0.00 0.00 46.21 3.58
1227 1437 0.462047 CGAAATCGGTGGGGGAGAAG 60.462 60.000 0.00 0.00 35.37 2.85
1234 1444 1.299541 CCTGAATCGAAATCGGTGGG 58.700 55.000 2.63 0.00 40.29 4.61
1240 1450 3.378112 TCACCATTGCCTGAATCGAAATC 59.622 43.478 0.00 0.00 0.00 2.17
1283 1493 3.118261 TGAATAATCACACCAGGAGGAGC 60.118 47.826 0.00 0.00 38.69 4.70
1337 1547 1.601419 CTGCAAGTGGGCCCATTCTG 61.601 60.000 31.45 24.90 0.00 3.02
1433 1652 3.551890 CACCGTCAAACTTCCTGATATCG 59.448 47.826 0.00 0.00 0.00 2.92
1441 1660 0.250338 AGCCTCACCGTCAAACTTCC 60.250 55.000 0.00 0.00 0.00 3.46
1455 1675 2.301583 ACAGAGAAACCAGAAGAGCCTC 59.698 50.000 0.00 0.00 0.00 4.70
1459 1679 5.395103 CCCATCTACAGAGAAACCAGAAGAG 60.395 48.000 0.00 0.00 34.61 2.85
1460 1680 4.467795 CCCATCTACAGAGAAACCAGAAGA 59.532 45.833 0.00 0.00 34.61 2.87
1464 1684 2.503356 AGCCCATCTACAGAGAAACCAG 59.497 50.000 0.00 0.00 34.61 4.00
1487 1710 1.271054 CCTTCGGATATGCCTTCCCTG 60.271 57.143 0.00 0.00 0.00 4.45
1543 1767 3.741860 GCGCAGATTGCCTATGCT 58.258 55.556 0.30 0.00 41.12 3.79
1617 1841 5.695851 AAGAAAACTGTAGTTGGCATGAG 57.304 39.130 0.00 0.00 38.44 2.90
1626 1850 7.746703 AGGAAGTCCATAAAGAAAACTGTAGT 58.253 34.615 0.00 0.00 38.89 2.73
1713 1937 7.904205 ACTTTTCTTTTAGACTATCCGGAAGA 58.096 34.615 9.01 0.00 0.00 2.87
1714 1938 8.443937 CAACTTTTCTTTTAGACTATCCGGAAG 58.556 37.037 9.01 10.22 0.00 3.46
1718 1942 7.237173 CAGCAACTTTTCTTTTAGACTATCCG 58.763 38.462 0.00 0.00 0.00 4.18
1719 1943 7.024171 GCAGCAACTTTTCTTTTAGACTATCC 58.976 38.462 0.00 0.00 0.00 2.59
1722 1946 8.148351 TCTAGCAGCAACTTTTCTTTTAGACTA 58.852 33.333 0.00 0.00 0.00 2.59
1746 1970 2.136878 CCCTCTATGCTGGGCGTCT 61.137 63.158 0.00 0.00 36.61 4.18
1749 1973 0.815615 GTTTCCCTCTATGCTGGGCG 60.816 60.000 0.00 0.00 43.04 6.13
1757 1981 5.355350 CGCAAATCTTCAAGTTTCCCTCTAT 59.645 40.000 0.00 0.00 0.00 1.98
1773 1997 0.239347 GCACAGAGTTGCGCAAATCT 59.761 50.000 38.81 38.81 45.32 2.40
1793 2017 2.560105 GCAGCCTCTGGTGAAATTTCTT 59.440 45.455 18.64 0.00 42.66 2.52
1801 2025 2.745698 CACTGCAGCCTCTGGTGA 59.254 61.111 15.27 0.00 42.66 4.02
1827 2051 9.107177 GCATTATCCTGAATAATACTCTCATGG 57.893 37.037 0.00 0.00 38.28 3.66
1872 2096 5.727434 AGATCATTTGGAATGGTTTGAAGC 58.273 37.500 0.00 0.00 0.00 3.86
1879 2103 4.401519 CAGCAGAAGATCATTTGGAATGGT 59.598 41.667 0.00 0.00 0.00 3.55
1881 2105 5.578005 ACAGCAGAAGATCATTTGGAATG 57.422 39.130 0.00 0.00 0.00 2.67
1933 3610 2.734079 GAGCTCGTTTCAACTCTTCAGG 59.266 50.000 0.00 0.00 0.00 3.86
1952 3629 3.372206 CACTTTCGACCTTGCTTATGGAG 59.628 47.826 0.00 0.00 0.00 3.86
1968 3645 5.291614 TGCTTGCAATTTCACTTTCACTTTC 59.708 36.000 0.00 0.00 0.00 2.62
1969 3646 5.063817 GTGCTTGCAATTTCACTTTCACTTT 59.936 36.000 15.21 0.00 0.00 2.66
1970 3647 4.567959 GTGCTTGCAATTTCACTTTCACTT 59.432 37.500 15.21 0.00 0.00 3.16
1971 3648 4.114794 GTGCTTGCAATTTCACTTTCACT 58.885 39.130 15.21 0.00 0.00 3.41
1972 3649 3.245990 GGTGCTTGCAATTTCACTTTCAC 59.754 43.478 19.28 9.10 0.00 3.18
1973 3650 3.118847 TGGTGCTTGCAATTTCACTTTCA 60.119 39.130 19.28 10.82 0.00 2.69
1974 3651 3.245990 GTGGTGCTTGCAATTTCACTTTC 59.754 43.478 19.28 9.09 0.00 2.62
1975 3652 3.118665 AGTGGTGCTTGCAATTTCACTTT 60.119 39.130 19.28 8.35 30.95 2.66
1978 3655 2.129607 CAGTGGTGCTTGCAATTTCAC 58.870 47.619 14.52 14.52 0.00 3.18
2004 3681 9.126151 CAGTCTAAGTGATTCTACCAGAGATAA 57.874 37.037 0.00 0.00 32.88 1.75
2005 3682 8.495260 TCAGTCTAAGTGATTCTACCAGAGATA 58.505 37.037 0.00 0.00 32.88 1.98
2007 3684 6.722328 TCAGTCTAAGTGATTCTACCAGAGA 58.278 40.000 0.00 0.00 0.00 3.10
2008 3685 6.601613 ACTCAGTCTAAGTGATTCTACCAGAG 59.398 42.308 0.00 0.00 0.00 3.35
2029 3706 3.326006 ACTGCATCCTTCAGAAGAACTCA 59.674 43.478 12.14 3.82 35.61 3.41
2034 3712 3.777106 ACAACTGCATCCTTCAGAAGA 57.223 42.857 12.14 0.00 35.61 2.87
2048 3726 7.870954 TCCTTAGTATCACAGTGTTTACAACTG 59.129 37.037 13.13 2.13 37.50 3.16
2075 3753 0.104855 GGGCGACATGATCTACTGCA 59.895 55.000 0.00 0.00 0.00 4.41
2077 3755 2.827800 ATGGGCGACATGATCTACTG 57.172 50.000 0.00 0.00 38.70 2.74
2078 3756 3.845781 AAATGGGCGACATGATCTACT 57.154 42.857 0.00 0.00 40.44 2.57
2079 3757 4.084537 CGTAAAATGGGCGACATGATCTAC 60.085 45.833 0.00 0.00 40.44 2.59
2081 3759 2.872245 CGTAAAATGGGCGACATGATCT 59.128 45.455 0.00 0.00 40.44 2.75
2082 3760 2.602217 GCGTAAAATGGGCGACATGATC 60.602 50.000 0.00 0.00 40.44 2.92
2083 3761 1.333619 GCGTAAAATGGGCGACATGAT 59.666 47.619 0.00 0.00 40.44 2.45
2085 3763 0.732571 AGCGTAAAATGGGCGACATG 59.267 50.000 0.00 0.00 40.44 3.21
2089 3767 2.605837 TCATAGCGTAAAATGGGCGA 57.394 45.000 0.00 0.00 0.00 5.54
2092 3770 4.881850 AGGAGTTTCATAGCGTAAAATGGG 59.118 41.667 0.00 0.00 0.00 4.00
2094 3772 6.422776 ACAGGAGTTTCATAGCGTAAAATG 57.577 37.500 0.00 0.00 0.00 2.32
2095 3773 8.556213 TTTACAGGAGTTTCATAGCGTAAAAT 57.444 30.769 0.00 0.00 0.00 1.82
2096 3774 7.966246 TTTACAGGAGTTTCATAGCGTAAAA 57.034 32.000 0.00 0.00 0.00 1.52
2097 3775 8.556213 AATTTACAGGAGTTTCATAGCGTAAA 57.444 30.769 0.00 0.00 33.56 2.01
2100 3778 6.092259 GTGAATTTACAGGAGTTTCATAGCGT 59.908 38.462 0.00 0.00 28.18 5.07
2102 3780 7.377766 TGTGAATTTACAGGAGTTTCATAGC 57.622 36.000 0.00 0.00 28.18 2.97
2106 3784 9.513906 TCATAATGTGAATTTACAGGAGTTTCA 57.486 29.630 9.11 0.00 32.78 2.69
2149 3829 5.779529 AGATGCAACAGTCACAAAGAAAT 57.220 34.783 0.00 0.00 0.00 2.17
2156 3836 3.544684 ACAGAAAGATGCAACAGTCACA 58.455 40.909 0.00 0.00 0.00 3.58
2157 3837 4.274459 AGAACAGAAAGATGCAACAGTCAC 59.726 41.667 0.00 0.00 0.00 3.67
2161 3841 4.518211 AGGAAGAACAGAAAGATGCAACAG 59.482 41.667 0.00 0.00 0.00 3.16
2163 3843 5.444663 AAGGAAGAACAGAAAGATGCAAC 57.555 39.130 0.00 0.00 0.00 4.17
2173 3853 2.486548 CGGTTGGGAAAGGAAGAACAGA 60.487 50.000 0.00 0.00 0.00 3.41
2179 3859 0.313987 GCAACGGTTGGGAAAGGAAG 59.686 55.000 21.37 0.00 0.00 3.46
2187 3867 1.966451 GACCAGAGCAACGGTTGGG 60.966 63.158 21.37 15.75 34.99 4.12
2191 3871 1.339097 AAGTAGACCAGAGCAACGGT 58.661 50.000 0.00 0.00 38.56 4.83
2192 3872 3.251571 GTTAAGTAGACCAGAGCAACGG 58.748 50.000 0.00 0.00 0.00 4.44
2193 3873 3.251571 GGTTAAGTAGACCAGAGCAACG 58.748 50.000 0.00 0.00 37.14 4.10
2194 3874 3.261137 AGGGTTAAGTAGACCAGAGCAAC 59.739 47.826 0.00 0.00 38.98 4.17
2195 3875 3.517612 AGGGTTAAGTAGACCAGAGCAA 58.482 45.455 0.00 0.00 38.98 3.91
2211 3891 1.276989 CAATTGCAGATGCCAAGGGTT 59.723 47.619 1.72 0.00 41.18 4.11
2213 3893 0.461339 GCAATTGCAGATGCCAAGGG 60.461 55.000 25.36 0.00 41.18 3.95
2218 3898 3.720949 TCATTAGCAATTGCAGATGCC 57.279 42.857 30.89 0.87 43.57 4.40
2219 3899 4.503007 CACTTCATTAGCAATTGCAGATGC 59.497 41.667 30.89 15.69 45.16 3.91
2220 3900 5.647589 ACACTTCATTAGCAATTGCAGATG 58.352 37.500 30.89 28.61 45.16 2.90
2221 3901 5.909621 ACACTTCATTAGCAATTGCAGAT 57.090 34.783 30.89 20.45 45.16 2.90
2222 3902 7.252708 CAATACACTTCATTAGCAATTGCAGA 58.747 34.615 30.89 19.14 45.16 4.26
2223 3903 6.474427 CCAATACACTTCATTAGCAATTGCAG 59.526 38.462 30.89 20.14 45.16 4.41
2225 3905 6.332630 ACCAATACACTTCATTAGCAATTGC 58.667 36.000 23.05 23.05 42.49 3.56
2228 3908 9.632638 AGAATACCAATACACTTCATTAGCAAT 57.367 29.630 0.00 0.00 0.00 3.56
2230 3910 9.109393 GAAGAATACCAATACACTTCATTAGCA 57.891 33.333 0.00 0.00 35.38 3.49
2236 3916 9.685276 ATCAATGAAGAATACCAATACACTTCA 57.315 29.630 0.00 0.00 44.43 3.02
2279 3970 7.607607 TGAGTGCTGAGTGTAACAATTATTCAT 59.392 33.333 0.00 0.00 41.43 2.57
2282 3973 6.936900 ACTGAGTGCTGAGTGTAACAATTATT 59.063 34.615 0.00 0.00 41.43 1.40
2300 3991 5.512753 ACTAGTGATATCTGCACTGAGTG 57.487 43.478 8.52 8.52 45.52 3.51
2341 4032 8.854614 ATGCCAGAAATTATCAGAACCTATAC 57.145 34.615 0.00 0.00 0.00 1.47
2346 4037 5.973565 CGAAATGCCAGAAATTATCAGAACC 59.026 40.000 0.00 0.00 0.00 3.62
2350 4041 9.599322 GTATTACGAAATGCCAGAAATTATCAG 57.401 33.333 0.00 0.00 0.00 2.90
2354 4045 8.609176 GTCAGTATTACGAAATGCCAGAAATTA 58.391 33.333 0.00 0.00 0.00 1.40
2356 4047 6.597672 TGTCAGTATTACGAAATGCCAGAAAT 59.402 34.615 0.00 0.00 0.00 2.17
2357 4048 5.935206 TGTCAGTATTACGAAATGCCAGAAA 59.065 36.000 0.00 0.00 0.00 2.52
2422 4113 8.162878 AGAGGTTTCATCAAATATGCAGTATG 57.837 34.615 0.00 0.00 40.87 2.39
2423 4114 7.172190 CGAGAGGTTTCATCAAATATGCAGTAT 59.828 37.037 0.00 0.00 0.00 2.12
2424 4115 6.479990 CGAGAGGTTTCATCAAATATGCAGTA 59.520 38.462 0.00 0.00 0.00 2.74
2425 4116 5.295292 CGAGAGGTTTCATCAAATATGCAGT 59.705 40.000 0.00 0.00 0.00 4.40
2426 4117 5.295292 ACGAGAGGTTTCATCAAATATGCAG 59.705 40.000 0.00 0.00 0.00 4.41
2427 4118 5.185454 ACGAGAGGTTTCATCAAATATGCA 58.815 37.500 0.00 0.00 0.00 3.96
2428 4119 5.525378 AGACGAGAGGTTTCATCAAATATGC 59.475 40.000 0.00 0.00 0.00 3.14
2449 4140 9.907576 CTCGTTAGATATGAAAAACAATGAGAC 57.092 33.333 0.00 0.00 32.02 3.36
2450 4141 8.604035 GCTCGTTAGATATGAAAAACAATGAGA 58.396 33.333 0.00 0.00 32.02 3.27
2472 4164 8.733857 AAAAGAGAAAAGTTGATAAATGCTCG 57.266 30.769 0.00 0.00 0.00 5.03
2482 4174 8.522830 ACAGAACATGAAAAAGAGAAAAGTTGA 58.477 29.630 0.00 0.00 0.00 3.18
2484 4176 7.276438 GCACAGAACATGAAAAAGAGAAAAGTT 59.724 33.333 0.00 0.00 0.00 2.66
2486 4178 6.753279 TGCACAGAACATGAAAAAGAGAAAAG 59.247 34.615 0.00 0.00 0.00 2.27
2491 4184 5.210715 GTCTGCACAGAACATGAAAAAGAG 58.789 41.667 0.00 0.00 39.48 2.85
2494 4187 4.979943 TGTCTGCACAGAACATGAAAAA 57.020 36.364 0.00 0.00 39.48 1.94
2509 4202 3.916776 GCAAACTAGCATTTTCTGTCTGC 59.083 43.478 0.00 0.00 36.15 4.26
2522 4215 1.723870 CCAGCCGATGCAAACTAGC 59.276 57.895 0.00 0.00 41.13 3.42
2523 4216 0.745845 AGCCAGCCGATGCAAACTAG 60.746 55.000 0.00 0.00 41.13 2.57
2524 4217 0.322456 AAGCCAGCCGATGCAAACTA 60.322 50.000 0.00 0.00 41.13 2.24
2525 4218 1.589716 GAAGCCAGCCGATGCAAACT 61.590 55.000 0.00 0.00 41.13 2.66
2526 4219 1.153958 GAAGCCAGCCGATGCAAAC 60.154 57.895 0.00 0.00 41.13 2.93
2527 4220 1.588824 CTGAAGCCAGCCGATGCAAA 61.589 55.000 0.00 0.00 41.13 3.68
2528 4221 2.033911 TGAAGCCAGCCGATGCAA 59.966 55.556 0.00 0.00 41.13 4.08
2529 4222 2.437180 CTGAAGCCAGCCGATGCA 60.437 61.111 0.00 0.00 41.13 3.96
2537 4230 0.601558 AGTGCATTTGCTGAAGCCAG 59.398 50.000 3.94 0.00 43.22 4.85
2538 4231 0.599558 GAGTGCATTTGCTGAAGCCA 59.400 50.000 3.94 0.00 42.66 4.75
2539 4232 0.599558 TGAGTGCATTTGCTGAAGCC 59.400 50.000 3.94 0.00 42.66 4.35
2540 4233 2.427232 TTGAGTGCATTTGCTGAAGC 57.573 45.000 3.94 0.00 42.66 3.86
2541 4234 4.621460 CAGATTTGAGTGCATTTGCTGAAG 59.379 41.667 3.94 0.00 42.66 3.02
2542 4235 4.552355 CAGATTTGAGTGCATTTGCTGAA 58.448 39.130 3.94 0.00 42.66 3.02
2543 4236 3.613193 GCAGATTTGAGTGCATTTGCTGA 60.613 43.478 3.94 0.00 42.66 4.26
2544 4237 2.666508 GCAGATTTGAGTGCATTTGCTG 59.333 45.455 3.94 0.00 42.66 4.41
2545 4238 2.561419 AGCAGATTTGAGTGCATTTGCT 59.439 40.909 3.94 0.00 42.47 3.91
2546 4239 2.921754 GAGCAGATTTGAGTGCATTTGC 59.078 45.455 0.00 0.00 42.47 3.68
2547 4240 4.168922 TGAGCAGATTTGAGTGCATTTG 57.831 40.909 0.00 0.00 42.47 2.32
2557 4250 1.470098 CCCTTCGGTTGAGCAGATTTG 59.530 52.381 0.00 0.00 0.00 2.32
2562 4255 2.747855 GGCCCTTCGGTTGAGCAG 60.748 66.667 0.00 0.00 0.00 4.24
2571 4264 1.144936 GAGTGGATCAGGCCCTTCG 59.855 63.158 0.00 0.00 0.00 3.79
2577 4270 3.726607 CAACTATGAGAGTGGATCAGGC 58.273 50.000 0.00 0.00 38.87 4.85
2580 4273 5.835280 TCATAGCAACTATGAGAGTGGATCA 59.165 40.000 12.19 0.00 45.13 2.92
2581 4274 6.338214 TCATAGCAACTATGAGAGTGGATC 57.662 41.667 12.19 0.00 45.13 3.36
2593 4288 4.023980 ACAGCAGTAGGTCATAGCAACTA 58.976 43.478 0.00 0.00 0.00 2.24
2600 4295 4.966168 TCCCATTAACAGCAGTAGGTCATA 59.034 41.667 0.00 0.00 0.00 2.15
2604 4299 3.523564 ACATCCCATTAACAGCAGTAGGT 59.476 43.478 0.00 0.00 0.00 3.08
2621 4316 5.240183 ACATATCAGCATGCAGTTAACATCC 59.760 40.000 21.98 0.00 34.76 3.51
2624 4319 4.576053 GGACATATCAGCATGCAGTTAACA 59.424 41.667 21.98 0.00 34.76 2.41
2627 4322 4.694760 AGGACATATCAGCATGCAGTTA 57.305 40.909 21.98 11.86 34.76 2.24
2644 4339 0.036306 ACCGTGGACCATCAAAGGAC 59.964 55.000 0.00 0.00 0.00 3.85
2656 4351 2.093869 GCAGTCCAATAACTACCGTGGA 60.094 50.000 0.00 0.00 37.83 4.02
2660 4355 2.671396 GTGTGCAGTCCAATAACTACCG 59.329 50.000 0.00 0.00 0.00 4.02
2662 4357 3.670625 TGGTGTGCAGTCCAATAACTAC 58.329 45.455 7.25 0.00 0.00 2.73
2668 4363 1.202915 TGACATGGTGTGCAGTCCAAT 60.203 47.619 12.82 5.64 37.27 3.16
2687 4382 8.725148 ACAGAAATAGAAGCAGACAATTTACTG 58.275 33.333 0.00 0.00 37.22 2.74
2688 4383 8.854614 ACAGAAATAGAAGCAGACAATTTACT 57.145 30.769 0.00 0.00 0.00 2.24
2705 4400 4.105057 ACACCAACCCCTGTAACAGAAATA 59.895 41.667 0.00 0.00 32.44 1.40
2711 4406 1.214217 TCACACCAACCCCTGTAACA 58.786 50.000 0.00 0.00 0.00 2.41
2719 4414 1.698506 TGTTCCAATCACACCAACCC 58.301 50.000 0.00 0.00 0.00 4.11
2736 4432 6.650390 GGCATTAACATTCAAAACCAAGATGT 59.350 34.615 0.00 0.00 0.00 3.06
2740 4436 4.987912 ACGGCATTAACATTCAAAACCAAG 59.012 37.500 0.00 0.00 0.00 3.61
2742 4438 4.279671 AGACGGCATTAACATTCAAAACCA 59.720 37.500 0.00 0.00 0.00 3.67
2743 4439 4.805219 AGACGGCATTAACATTCAAAACC 58.195 39.130 0.00 0.00 0.00 3.27
2744 4440 7.753132 TGAATAGACGGCATTAACATTCAAAAC 59.247 33.333 0.00 0.00 30.33 2.43
2745 4441 7.821652 TGAATAGACGGCATTAACATTCAAAA 58.178 30.769 0.00 0.00 30.33 2.44
2746 4442 7.384439 TGAATAGACGGCATTAACATTCAAA 57.616 32.000 0.00 0.00 30.33 2.69
2748 4444 6.017192 CCATGAATAGACGGCATTAACATTCA 60.017 38.462 0.00 0.00 35.92 2.57
2749 4445 6.017109 ACCATGAATAGACGGCATTAACATTC 60.017 38.462 0.00 0.00 0.00 2.67
2750 4446 5.827797 ACCATGAATAGACGGCATTAACATT 59.172 36.000 0.00 0.00 0.00 2.71
2751 4447 5.239306 CACCATGAATAGACGGCATTAACAT 59.761 40.000 0.00 0.00 0.00 2.71
2752 4448 4.574421 CACCATGAATAGACGGCATTAACA 59.426 41.667 0.00 0.00 0.00 2.41
2753 4449 4.814234 TCACCATGAATAGACGGCATTAAC 59.186 41.667 0.00 0.00 0.00 2.01
2754 4450 5.029807 TCACCATGAATAGACGGCATTAA 57.970 39.130 0.00 0.00 0.00 1.40
2755 4451 4.681074 TCACCATGAATAGACGGCATTA 57.319 40.909 0.00 0.00 0.00 1.90
2756 4452 3.558931 TCACCATGAATAGACGGCATT 57.441 42.857 0.00 0.00 0.00 3.56
2757 4453 3.405831 CATCACCATGAATAGACGGCAT 58.594 45.455 0.00 0.00 30.57 4.40
2758 4454 2.837498 CATCACCATGAATAGACGGCA 58.163 47.619 0.00 0.00 30.57 5.69
2759 4455 1.532868 GCATCACCATGAATAGACGGC 59.467 52.381 0.00 0.00 30.57 5.68
2762 4458 3.819337 AGCATGCATCACCATGAATAGAC 59.181 43.478 21.98 0.00 44.12 2.59
2765 4461 4.208746 TGAAGCATGCATCACCATGAATA 58.791 39.130 20.99 0.00 44.12 1.75
2766 4462 3.028130 TGAAGCATGCATCACCATGAAT 58.972 40.909 20.99 0.00 44.12 2.57
2767 4463 2.425668 CTGAAGCATGCATCACCATGAA 59.574 45.455 20.99 0.00 44.12 2.57
2768 4464 2.021457 CTGAAGCATGCATCACCATGA 58.979 47.619 20.99 0.00 44.12 3.07
2769 4465 1.067060 CCTGAAGCATGCATCACCATG 59.933 52.381 20.99 11.54 44.18 3.66
2770 4466 1.341679 ACCTGAAGCATGCATCACCAT 60.342 47.619 20.99 7.19 0.00 3.55
2771 4467 0.038599 ACCTGAAGCATGCATCACCA 59.961 50.000 20.99 9.03 0.00 4.17
2772 4468 1.135199 CAACCTGAAGCATGCATCACC 60.135 52.381 20.99 4.86 0.00 4.02
2773 4469 1.135199 CCAACCTGAAGCATGCATCAC 60.135 52.381 20.99 8.73 0.00 3.06
2774 4470 1.179152 CCAACCTGAAGCATGCATCA 58.821 50.000 23.03 23.03 0.00 3.07
2775 4471 1.135199 CACCAACCTGAAGCATGCATC 60.135 52.381 21.98 18.73 0.00 3.91
2776 4472 0.892755 CACCAACCTGAAGCATGCAT 59.107 50.000 21.98 8.13 0.00 3.96
2777 4473 0.178995 TCACCAACCTGAAGCATGCA 60.179 50.000 21.98 0.00 0.00 3.96
2778 4474 0.524862 CTCACCAACCTGAAGCATGC 59.475 55.000 10.51 10.51 0.00 4.06
2779 4475 2.082231 CTCTCACCAACCTGAAGCATG 58.918 52.381 0.00 0.00 0.00 4.06
2780 4476 1.612726 GCTCTCACCAACCTGAAGCAT 60.613 52.381 0.00 0.00 30.74 3.79
2781 4477 0.250467 GCTCTCACCAACCTGAAGCA 60.250 55.000 0.00 0.00 30.74 3.91
2782 4478 0.250467 TGCTCTCACCAACCTGAAGC 60.250 55.000 0.00 0.00 0.00 3.86
2811 4507 1.070914 TCACAAGGCACAACGGATACA 59.929 47.619 0.00 0.00 0.00 2.29
2815 4511 0.813610 CAGTCACAAGGCACAACGGA 60.814 55.000 0.00 0.00 0.00 4.69
2824 4520 3.443681 ACTCAAAACCAACAGTCACAAGG 59.556 43.478 0.00 0.00 0.00 3.61
2842 4538 9.059260 CATGAATCACCATGAATATAACACTCA 57.941 33.333 0.00 0.00 44.98 3.41
2843 4539 8.019669 GCATGAATCACCATGAATATAACACTC 58.980 37.037 7.94 0.00 44.98 3.51
2890 4602 4.906618 AGAAACACTCCAAACGGATATGT 58.093 39.130 0.00 0.00 34.68 2.29
2892 4604 5.313712 ACAAGAAACACTCCAAACGGATAT 58.686 37.500 0.00 0.00 30.13 1.63
2906 4618 6.459573 GCACTGAATAGGAACAACAAGAAACA 60.460 38.462 0.00 0.00 0.00 2.83
2915 4627 7.716799 AATAAATGGCACTGAATAGGAACAA 57.283 32.000 0.00 0.00 0.00 2.83
2920 4632 6.377327 ACGAAATAAATGGCACTGAATAGG 57.623 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.