>input_sequence_64434
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------------------------------------------------------------ATGGAGGCACCACCATCGAG
GCAGGAAGGAACCTATTGGCATTGGCATGGTACTGCCCTAGCCTTGTTCTCATGTACAGTATCACCAGATTTTGCAACCT
----TATGTCGTCTGTCTTTTGTTGCCAT-----------------------GTACTATATATGTTAACTGGATACAGTT
TCTGCTTATAATGAAACAATGTAGGCTCTGTTTGAACTTC--AAAATTAGTAGCATTCCATGACATCACAGCTAGTCTTC
TCCCCCACCGATTTCGATTCAGGCAATGGTGAAGATGCTGCTGCGGACGATGGCTCCTCCTGGTGTGATTATTCAGATTC
TCCAGGACATGGTTCCAGCTTACACACAGAATGGGCCCACTTGCAGGACCAGCTTCATAAGGTAATATATAATTATTTTG
ACTTCCATGGGT----GTTGATTAA-----TCATGAATCATGAGTTTGCGTCGATATCAG-GAAGTTTGACGGTGAGGCT
CTTCTGGTTTCT---CTGTAGATGGGCTACAGGGAAGGCATATCCGAAGGGCGGAAAGAC-GCTGCCCAAGAGGGCTTCA
ATCTTGAGCATAGGCAATCTGCGCCTGAAGGATACAAGTGGGGTCTTGTTCGGGGAATTACTAGGTGAATTGGATTTCTG
CTCATGCCAACTACAGTTTTCTTTATGGACTTCCTCTTATATACTGTTCTTATTGTTTTTTTTTTTTGTCCTTAAAAAAA
GCAGTGCATTGGCTAGTCTTCCGGATAGTCTAAAAGAAAAGTTGCTGCTAGACGCCCAGCATAGAGGGAAACTTGAAGAT
TTGCGCAACTCTGTGCAAGAAATTTCACCAGAGGCTGCAGTGCGGATGTTCCATGAGAGTATTATTCAGGATAATGCTCC
GCTAGTGGAAAGCAGGCTTCAAACCATTCCAAATGATCTTCTGCTGTTGTTGCGCGAATGCCCAG---------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------AT
GTTCAAGTTCCTGAAGAGTTGAAACGAGCTCCATAA--------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------
>chr3D_1_TraesCS3D01G486000
CTGGCGAGATGGTGGATCTTTAAAAGATCCATTAGCTAACGCGTAACATCCCCATAAATAAACGGTGTGGTTAGTCTAAA
ATAAAACATAGGTATGTTGTTTACAGGGTTTGTAGGCACACTGTTAAAGTTGTAAAAATACTTATCAAAGAAATGGATAA
AAAATGGATGTATTTAAAACTAAAAACATCTAGATACATCCATTTCTCCGTCAACTATTTCCGGTCGGAGAGAGTACAAA
ATACCAAACGGAAAAAGGATTATATTTCTTTTGTTATTATACAAGGGCACTTTTTTCAAAATTTAGACTTATAACCTCGG
TCAAAAAAATATAGATTACATGTTATCAAAAATATATTATTGACAAATTATTTGAAATGTGCATTCAATTGCATAATTTT
TGTGGCATATAACTCATATTTTATTTATAAAATAACAGTCAAAGTTAGACATATTTTTTTTCTCAATAAAGAAAGTATAG
AACGAGGAAGTACAACATC-CGTATCCGTGACAAATAAACATCCGATTCGTGTTTGTGTTCGTCTCTCTTTCGAAACTAT
ACGAAAAA--AAAAGGAAGTGGAAAAGAACACCAGCCTTCTGTCCCGTCGGCCGTCGCCGCTCTCCCGACGCCGCCGCCG
GT-----CGCCTCCTCGTGTAGCCCCCCACGCCGGCCATCCCCCCGCCCGGCGTCGTCCTGCCCGCGGATCTCCGTCGCC
GCCTTCCCCGTAGAGCCCACGCGCCCCCTCCACCCCCGGCCTTGCCGTCCCCATCGAGCACTCAATCCGCCGGCCGTCAG
GTAAGGCTCCGTCCTCTCCCGGACTCCCGTCTTCCTCTTGCTTGCTAATCCCGCTGCACGAGCCGTGCGACTTCATCAAG
CGCTAGCTCTGGCTTTCGGGATGGATGGGGGCGGATG-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AACTTATAGAGAAAATCAAAGTTGTTGCCTG
TCAACTGACACCATTCTCCTTGGTGCTCCATGTTTGTTTCAGGTGCACGTTGGTTTCTCGATGGAGGCACCACCATCGAG
GCAGGAAGGAACCTATTGGCATTGGCATGGTACTGCCCTAGCCTTGTTCTCATGTACAGTATCACCAGATTTTGCAACCT
----TATGTCGTCTGTCTTTTGTTGCCAT-----------------------GTACTATATATGTTAACTGGATACAGTT
TCTGCTTATAATGAAACAATGTAGGCTCTGTTTGAACTTC--AAAATTAGTAGCATTCCATGACATCACAGCTAGTCTTC
TCCCCCACCGATTTCGATTCAGGCAATGGTGAAGATGCTGCTGCGGACGATGGCTCCTCCTGGTGTGATTATTCAGATTC
TCCAGGACATGGTTCCAGCTTACACACAGAATGGGCCCACTTGCAGGACCAGCTTCATAAGGTAATATATAATTATTTTG
ACTTCCATGGGT----GTTGATTAA-----TCATGAATCATGAGTTTGCGTCGATATCAG-GAAGTTTGACGGTGAGGCT
CTTCTGGTTTCT---CTGTAGATGGGCTACAGGGAAGGCATATCCGAAGGGCGGAAAGAC-GCTGCCCAAGAGGGCTTCA
ATCTTGAGCATAGGCAATCTGCGCCTGAAGGATACAAGTGGGGTCTTGTTCGGGGAATTACTAGGTGAATTGGATTTCTG
CTCATGCCAACTACAGTTTTCTTTATGGACTTCCTCTTATATACTGTTCTTATTGTTTTTTTTTTTTGTCCTTAAAAAAA
GCAGTGCATTGGCTAGTCTTCCGGATAGTCTAAAAGAAAAGTTGCTGCTAGACGCCCAGCATAGAGGGAAACTTGAAGAT
TTGCGCAACTCTGTGCAAGAAATTTCACCAGAGGCTGCAGTGCGGATGTTCCATGAGAGTATTATTCAGGATAATGCTCC
GCTAGTGGAAAGCAGGCTTCAAACCATTCCAAATGATCTTCTGCTGTTGTTGCGCGAATGCCCAG---------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------AT
GTTCAAGTTCCTGAAGAGTTGAAACGAGCTCCATAAGCAAGGTCGAAAGTGAAAGTGAAATTGCAAGCACCACTGATTTT
TTATCTCTGGTAGAATCACTTAGACTGAG-TTCTTCTGAAGGATGCAGTTGTAAACACTGTGATACTAAGGATGCAGTAG
ATCATGTCGCCCATTTTACGCTATGA--AACTCCTGTAAATTCACATTATGAATGACTATAGTAATATATTTCTTTGTGA
CTGTTGCATCTTTCTGTTCTTCCTTTCCCAACCGTTGCTCTGGTCTACTTAACCCTTGGCATCTGCAATTGCTAATGAAG
TGTATTGGTATTCTT-----------CATTGATATATTCTTGGGAAAGTATGAATAATTGTTACACTCAGCACTCAGTGC
AGATATCACTAGTTATTGTACTTTTGATAGTGTATAGGTTCTGATAATTTCTGGCATTTCGTAATACTGACAATTATGCT
AAGTATTGTAGAAGTATATTTGTTGAAATTGGCATACTGCATATTTGATGAAACCTCTCGTCTCA-TTGTTTTTCATATC
TAACGAGCATTTATCAAC-TTTTCTCTTTTTCATGTTCTGTGCAGACAGAAAATGCTAGTTTGCATCGGCTGGCTTCAGC
AAATGCACTCAAATCTGCTCAACCGAAGGGCCTGATCCACT--CTCATAGTTGCTATGACCTACTGCTGTTAATGGGATG
TTAACTGCATGCTGATATGTCCTTTGATGGTCCACGGTAGTTATTGGACTGCACACCATGTCAGTAAATTGTCTGCTTCT
ATTTCTGTTACAGG-GGTTGGTGTGATTGGAACATCTTGGTTTTGAATGTTAATGCCGTCTATTCATGGTGATGCATGCT
TCAGGTTGGTGAGAGCATCAAACCTTTGTATCCGTTGTGCCTTGTGACTGTTGGTTTTGAGTGTTA--------------
--TATTCATGGTGATTCATGCTTGATCCATCTGCCTTCTTCACATATCCGTTTGGAGTGTTTCTTGTTGTTCCTATTCAG
TGCCATTTATTTCGTTTCATGTGGGACTATT
>chr3B_484
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---GAGAAAGTACAAAATCCCGTATCCGTGACGAATAAACATCCGATTCGTGTTTGTGTTGGCCG-----TCGAAACTAT
ACGAAAAAGAAAAAGGAAGTGGAAAAGAACCGCAGCCTTCTATCCCGTCGGCCGTCGCCGTTCTCCCGACGCCGCCGCCG
CCGCCGCCGCCTCCTCGTGTAGCCCCCACCCGA---------------CGTCGTCCTCCTGCCCGTGGATCTCCGTCGCC
CCCTTCCACGTCGAGCCCACGCGCCCCTCCACCCCCCGGCCTCGCCGTCCCCATTGAGCACTCAATCCGCCGGCCGCCAG
GTAAGGCTTCATCCTCTCCCGGACTCCCGTCTTCCTCTTGCTTGCTGTTCCCGCTGCACGAGCTGTGCAACTTCATCAAG
CCCCAGCTCTGGGTTTCGGGGTGGATGGGGGCGGCGGGGAAGGTTTCGTGTGACCTATTCCTGTGATGCTCATGGTCTCT
TCCTGAGATTGTCTCAGATTTTGCATACTTTTGAATGCCAATTTACTCTCTTCGATGGATGGTAGAGGTAGGGAAAATTA
GCAATTGACAGATCAAAATAAGAGTGCATGACATGACACGAGGCCAACAAACTTATAGGGAAAATCAAGTTGA-TGCCTG
TCAACTGACACCATTCTCCTTGGTGCTCCATGTTTGTTTCAGGTTCAGATTGGTTTCTCGATGGAGGCACCACCGTCGAG
GGAGGAAGGAACCTACTGC------CATGGTACTGCCCTAGCCTTGTAA-------------------------------
-----------------------------------------------------------ATATGTTGCCCGGATACAGTT
TCTGCTTAATT--AAACAATGTAGGCTCTGTTTGAACTTC--AAAATTACTAGCATTCCATGACATCACAACTAGTTTTC
TCC-CCGCCAATTTCGATTCAGGCAATGGTGGAGATGCTGCTGCGGACGATGACTCCTCCTGGTGTGATTATTCAGATTC
CCCAGGGCATGGTTCCAGCTTACACATGGAATGGGCCCACTTGCAGGACCAGCTTCATAAGGTAATATATAATTATTTTG
ACTTCCATGGTTGTTGATTAATTAA-----TCATGAATCATGAGTTTGCGTTGATACCAAAGAAGTTTGACGGTAAGG--
CTCTTTTGGTTTCTCTTGTAGATGGGCTATAGGGAAGGCATAACCGAAGGGCGGAAGGAC-GCTGCCCAAGAGGGCTTCA
ATCTTGGGCATAGGCAATCTGCGCCTCAAGGATACAAGTGGGGTCTCGTTCGGGGAATTACTAGGTGAAGTGGATTTCTG
GTCATGCCAGCTACAGTTTTCTTTATAGACTTCCTCTTATATACTGTTCTTTT--TTTTTTTTTGTTGTCCTTAAAAAAA
GCAGTGCATTGGCTAGCGTTCAAGACAGTCTAAAAGAAAAGTTGCTGCTCGATGCCCAGCGTAGAGGGAAACTTGAGGAT
TTGCGCAACTCTGTGCGAGAAATTCCACCAGAGGCTGCACTGCGGATGTTTCATGAGAGTATTATTCAGGATAATGCTCC
GCTAGTGGAAAGCAGCCTTCAAGCTATTCCAAATGATCTTCTGCTGTTGTTGCGCGAATGCCCAGATGTTCAAGTTCCTG
AAGAGTTGAAACGAGCTCCGTAGGCAAGGTTGAAAGTGAAAGTGAAATTGCAAGCAACACTGATTTTGAAGTCTGGTAGA
ATCACTTGGACTGAGTTCTTCTGAAGGATGCGGTTGTAAACCCTGTGATACTAAGATTTTCTTTATCATGTCACCCCTTT
CTTGCTATAGGTTCTGATAATTTCTGGCATTTCGTAATACTGACAACTATGCTAAGTATTGTAGAAGTATATTTGTTGAA
AATGGCATACTGCATATTTGATGAAATCTCTCGTCTCATTGTTTTTCATATCTAACGAGCATTTATCAACTTTCTTCTTT
TTCATGCTCTGTGCAGACAGAAAATGCTAGTTTGCATCGGCTGGCTTCAGCAAATGCACTCAAATCTGCTCAACCGAAGG
GCCTGATCCACTCCTCAGAGTTGCTATGCCCTACTGCTGTTAATGGGATGTTAACTGCATGCTGATATGTCCTTTGACGG
TCCATGGTAGTTATTGGACTGCACACCATGTCAGTAAATTGTCTGCTTCTATTTCTGTTACAGGGGTTGGTGTGATGGGA
ACATCAAGCTGTTGGTTTTGCGTGTTAATGCCATCTATTCATGGTGATGCATGCTTCAGGTTGGTGAGAGCATCAAACCT
TGTATCCGTTGTGACTCGTGACTGTTGGTTTCGAGTGTTATATTCATGGTGATTCATGCTTGATCCATCTGCCTTCTTCA
CATGTCCGTTTGGAGTGTTTCTTGTTGTTCCTATTCAGTGCCATTTATTTGGTTTCATGTGGGACTATTTGTTGGTTGCT
CCTGAGTTGAATTCAGTACCAGGCCCAGATGCTAACTCTTTTTTGTCTGTCTGCAGGACATAATTTGCAATGTTTGGTAC
TCAGCAGTCAGCACCAGAAATCCCTGGACGAAATGATCGAACATTTGGATATTCTTCTGCTGTCTCTTGTTACCTGATAT
GTCATTCGGTAGTCTGTTATGCATTGTATAGCCAAGCAGGTTTGCACCATCTGTTCTACTGTCTCAGTTTGGCACCAAAG
TAGACCAGCAACCAACAGTTAGTTGCATTCATAACAGTTAGTCCTCCCCCAAAAAATTTCTTCACAGTTTGGTCCAAGCC
TGGGCAGGGGGCAGGACCAAATAGCTGTTTTCTTGTATATAGTTCCTC-TGTGTCATTCTCATTTATTATATTTTCCTTT
TGTTGTCCTTCAAGCAGTGCATTAGCTAGTCTTCCTGACAGTCTAAAAGAAAAGTTGCTGCTCGATGCCCAGCGTAGAGG
AAAACTTGAAGATTTGCACAATTCTGTGCAAGAAATTCCAGCAGAGGGTGCACTGTGGATGTTTCATGAGAGTATTCTTC
AGGATAATCGTCAACCAGAGGAAAGCAAGCTCCGAACTTTTCCGAAGGACCTTCTGTTGCTGTTGCACGACTGCCCAGAT
GTTCAAGTTTCTGAAGAGTTGAAAAGAGTTCCGTAACCAAAGTCCT------AAATGAAATTGCAAGCACCACTGGTTTC
GAAG-TCTGGTAGAATCACTTAGACCGAGTT-CTTCTGAAGGATGTAGTTATAAGTCATGTGATACTAATTAAGATTTTC
TTTATGGTGTAACCCTTTCTTTGCCATGAACTCCTGTAAATTCCCATCATGAATGACAATAATAATAT-TTTCTTCCTAA
GTTTCGCATCTTCCTGTTATTCATTTACCA-----TGCTCTGGTTTACTTGATGCTTTTGGCATTTGCTAGTGTACCCAT
AGTGGTATTTCCG--TTGATTTGATCCATTGTGGTATTCTTGGGAAAGTCTGGATAATTG---C-------ACTCAGTGA
AGATATCATTAGACATTCTGCCATTGCTAGC-TATAAGTTTTGAAACATTCTGCCATTTCACCATGCTGACAATGTGGTA
AATTGAAGATGCACGTTTCCAGAAATCATTAGATAT------------------------------------------TC
TATGGAGCATTTACCCATTTTTTGTCCTTTCCATGTTTTGTTCAGAGAA-------------------------------
AAATGCACTAAAATGTGCTCAACTGAAGGACCCTGATCCACTCCTCAGAGTTGCCATGCCCTACTGCTGTTAATGTGAGG
TGAACTGCATGCTGATATATCCTTTGATGGCCCATGATAGTTGTTGGACTGCACACCATGTGTGTAAATTGTCTGCTTCG
ATTTCAGTTACAGCCGGTTGGTGTGATTGGAGCATATCAAGCTGAGCATGAGCATCCCTC------------------CT
TCAGGTTGGTGAGAGCATCAAACCTT-GTACCCGTTGTGGCTTGTGACTGTTGGTTTCCAGTGTTAATGCCATCTATTCA
TCTATTCATGGTGATTCATGCTTGATCCATCTGCCTTCTTCTCGTATCCGTTTGGAGCGTTTCTTGCTGTTTCTATTCAG
TGCCATTTATT--------------------
>chr4A_1054
--------------------------------------------------------------------------------
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---------------------------------TGCCCTAGCCTTGTTCTGATGTA--GTATCACTAGATTCTGCAACCT
----TCT---GTCTGTCTTTTGTTGCCTT-----------------------G-------CATGTTACATGGATACAGTG
TCT-----------AACGATGTAGATTCTGTTTGAACTGG--AATATTA---ACATTCCATATCATCACAACTAGTTGTT
TT--CCACCAATTTTGATTCAGGCAATGGTGAAGATGCTGCTGC---AGATGATGACTCCTGGTGTGATGCTTCAGATTC
TCCAGGGCATGATTCCAGCTTACACAGAGAATGGACCCACAGGCAGGACCAGTTTCATAAGGTAC---ATGATTATTTTC
ACTTCCGTGGTT----ATTGATTAA-----TCATGAATCATGAATTTGTG-TGATGTCCAAAAAGTTTGAAAGTAAGG--
CTTTTGGTCTCT---TTGTAGATGGGCTATAGGGATGGTATAACAGAAGGGCAGAAGGATGGTTGCCCAAGAGGGGTTCA
ACCTTGGGCATAGGCAATCTGCGCATGTTGGATACAAGTGGGGTCTCGTTCGGGGGATCACTAGGTAAACTGCATTTCTG
GTCGTGTG------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------AATAACAGTTTTCTTGTATAAAGTTCCTCTTGTGTCATTCTCATTTATTATATTTTCCTTT
TGTTGTCCCTCAAGCAGTGCATTAGCTAGTCTTCCTGACAGTCTAAAAGAAAAGTTGATGCGCGATGCCCAGCGTAGAGG
AAAACTTGAAGATTTGCACAACTTCGTGCTAGAAATTTCAGCACAGGGTGCGCTGCAACTGTTTCACGAGAGTACACTTC
AGGATAATCGTCGACCAGAGGAAAGCATGCTCCAAACAATTACAAAGGACCTTCTACTGTTGTTGCATGAATGCCCAGAT
GTTCATGTTAGTGAAGAGTTGAAACGAGTTCCATAAGCAAGGTCAT------ACATGAAACTGCTGGCACCACTGATTTC
GAAG-TCAGGTAGAATCACTTAGACCGAG-T-CTTCTGAAGGATGTAATTGTAAATCCTGTGATACTAAAG----TTTTC
TTTATGGCGTCACCCTTTCTTTCCTCTGAACTCCTGTAAATTTGCAGTATGAATAATGATAATCATATCTTTCTTCCTGA
GTTTTGCATCTTCCTCTTATTCCTTTACCA-----TGCTCTGGTCTACCTGAGCATTCCTGA------------------
-GTATTGGTAGTCTATTGATTTGATCCATTGTGATATTCTTGGGACAGTCTCGATACTTGTTAC-------ACTCAGTGC
AGACATCACTAGATATTTTATTTTTGCTAGTT--TAAGTTTTGAAACATTCTGGCATTTCGCAATACTGACAATGCGGTA
TCTACAGTTAAAGAATGCAAATGCAGTAGTA--------CATATTTGATGAAACCTCTCACCTCGTTTGTTTTTCATATC
AAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr7D_1054
--------------------------------------------------------------------------------
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---------------------------------TGCCCTAGCCTTGTTCTGATGTA--GTATCACAAGATTTTGCAACCC
TCTCTCT---GTCTATCTTTTGTTGACGCTCTTATATTATGGGACGGAAGGAG-------TATGTTACTTGGATACAGTT
TCT-----------AACAATGTAGATTCTGTTTGAACTTG--AATGCTA---GCATTCCATATGATCACAGCTAATTGTT
TT--CCACCAATTTCGATTCAGGCAATGGTGAAGATGCTGCTGC---AGATGATGACTCCTGGTGTGAGGCTTCAGATTC
TCCAGGACATGATTCCAGCTTACACAGAGAATGGACCCACAGGCAGGACCAGTTTCATAAGGTAC---ATGATTATTTCG
TCTTCAATGGTT----ATTGATTAA-----TCATGAACCGTGAATTTGTG-TGATGTCCAAAAAGTTTGAAGC-AAGG--
CTTTTGGTTTCT---TTGTAGATGGGCTATAGGGATGGTATAACAGAAGGGCAGAAAGAT-GTTGCCCAAGAGGGGTTCA
ACCTTGGGCATAGGCAATCTGCGCATGTTGGATACAAGTGGGGTCTTGTTCGGGGGGTTACTAGGTAAATTGCATTTCTG
GACGCA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------CAAATAACAGTTTTCTTGTATAGAGTTCCTCTTGTGTCATTCTCAGTTATTATGTTTTCCATT
TGTTGTCCTTCAAGCAGTGCATTTGCTAGTCTTCCCGACAGTCTAAAAGAAAAGTTGCTGCTCGACGGCCAGCGTAGAGG
AAAACTTGAAGGTTTGCACAACTCCGTGCAAGAAATTTCAGCACAGGGTGCTCTGCAGCTGTTTCACGAGAGTACTCTTA
AGGATAATCTTCGACCAGAGGAAAGCAAGCTCCAAACAATTACAAAGGACCTTCTACTGTTTTTGCACGAATGCCCTGAT
GTTCATGTTAGTGAAGAGTTGAAACGAGTTCCATAAGCAAGGTCAT------ACATGAAATTGCAGGCACCACTGATTTC
GAAG-TCAGGTAGAATCACTTAGACCGAG-T-CTTCTGAAGGATGTAATTGTAATCA-----------------------
--------------------------------------------------------------------------------
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-------------------------------
>chr7A_1054
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------TGCCCTAGCCTTGTTCTGATGCA--GTATCACTAGATTTTGCAACCT
----TCT---GTCTGTCTTTTGTTGCCAT-----------------------G-------TATGTTACTTGGATACAGTT
TCT-----------AACAATGTAGCTTCTGTTTGAACAAAAAAAAAATA---GCATTCCATATCATCACAGCTAATTGTT
TT--CCACCAATTTTGATTCAGGCAATGGTGAAGATGCTGCTGCTGCAGATGATGACTCCTGGTGTGATGCTTCAGATTC
TACAGGACATGATTCCAGCTTACACAGAGAATGGACCCACAGGCAGGACCAGTTTCATAAGGTAC---GTGAATATTTTG
ACTTCAATTTGATACAGAGTTTGTGTGATGTCATGAATCATGAATTTGTG-TGATGTCCAAAAAGTTTGAAAGTAAGG--
CTTTTGGTTTCT---TTGTAGATGGGCTATAGGGATGGTATAACAGAAGGGCAGAAGGAT-GCTGCCCAAGAGGGGTTCA
ACCTTGGGCATAGGCAGTCTGCGGATGTTGGATACAAGTGGGGTCTTGTTCGGGGGATTACTAGGTAAATTGCATTTCTG
GTTGCGTG------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------AATAACAGTTTTCTCGTATAAAGTTCCTCTTGTGTCATTCTCATTTATTATATTTTCGTTT
TGTTGTCCTTCAAGCAGTGCATTTGCTAGTCTTTCCGACAGTCTTAAAGAAAAGTGGCTGCTCGACGCCCAGCGTAGAGG
AAAACTTGAAGATTTGCACAACTTCGTGCAAGAAATTTCAGGACAGGGTGCTCTGCAGTTGTTTCACGAGAGTACTCTTA
AGAATAATCTTCGACCAGAGGAGAGCAAGCTCCAAACAATTACAAAGGACCTTCTCCTGTTGTTGCACGAATGCCCAGAT
GTTCATGTTAGTGAAGAGTTGAAACGAGTTCCATAAGCAAGGTCAT------ACATGAAATTGCAGGCACCACTGATTTT
GAAG-TCTGATAGAATCACCCACACCTAG-T-CTTCTGAAGGATGTAACAGTAAATTCTGTGATACTAAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS---S--------S----------------S---------------------------S-S-SSSSSS----------
------------------------------SS---------S------------------S-------------------
SS-------------------------SS-SSSSSSSSSSSSSSSSSS--S----S---------S--------------
S------S---S---------------SS-SS----------S-----------S---------------------S---
--------S-S-----------------------------------SS---------------S----S-----------
-S-S--------S-------S-------------SS--------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------SS-SSS------
--------------------------------------------S--SS-------------------------S-----
-S-------------S--SSSSSSS-------------------------S-----SS-------S--------------
-----S-SSS-------------------------------------------SSSSSS--------S------------
--------SSSSS------------------------------------S--------------------------S---
---S-----S------------------------------------------S---------------------------
--------------------------S-----------------------------------------------------
---------------------------------------------------S-------S--------------S---SS
---S-----------S-------------S------------S-------------------------------------
------S-------------------------------------------------------------------------
S--------S----------------S------------------------S-SS---------S---------------
----------------SS---SS--S-----------------------S--S-------S---------------S---
----------------S-------S--------------S----------S-----------------------------
---------------S------S-S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S------------------S---------------SSSSSSSS--S-------------------------
SS-SS--------------------S-----S-------------S--------------------------S-SSS-SS
S-S---S--S-SSSS--S-SS-SSS------------------S-------------S---S------S------SS---
S-S---------S-----S-------S---SSSSS---------------S-S----SSSSSS-SSSS-S-SSS-SSS-S
S---------S---S----------------SS----------------S--S-----------SSSSSSS---------
------------S----S--------S----S----S---S---S-SS-------------S------------SSS-SS
--S-SSS------SSS-SSSS-SSSSS---S-SSSSSSS--------------------SS---S---------------
---S---------S-S-S-----S--S---S------S---S----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---------S----S--------S-----S--SSSSS-SSS------S------S---S----------------S--S-
-S----------------S-----------S---S-S-----S------------------SS----------------S
-----S-------S-----------------S---S-SSSSS-SSSSSSSSSSSS--S--SSSSSSSSSSSSSSSSSS--
--------------------------S---S--------S-----------------SS---------------------
-----------------------------------------S-S-------------S--------S----S--------
-----------SSSSSSSSSSSSSSSSSSSS
>forward_53
---------------------------------AGCTAACGCGTAACATCCCC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>reverse_1997
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------------AGAT
TTGCGCAACTCTGTGC----------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------
>forward_1679
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AGGAAGTTTGACGGTGAGGC-
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------
>reverse_4339
--------------------------------------------------------------------------------
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------------------GTCCTTTGATGGTCCACGGT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
