Multiple sequence alignment - TraesCS3D01G485500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G485500 chr3D 100.000 2998 0 0 1 2998 582026403 582029400 0.000000e+00 5537.0
1 TraesCS3D01G485500 chr3D 83.048 643 77 8 1475 2104 582131900 582131277 3.380000e-154 555.0
2 TraesCS3D01G485500 chr3D 87.032 347 29 8 2666 2998 582130653 582130309 7.840000e-101 377.0
3 TraesCS3D01G485500 chr3D 77.987 477 48 27 2505 2955 582132704 582132259 2.310000e-61 246.0
4 TraesCS3D01G485500 chr3D 97.959 49 1 0 2949 2997 582130410 582130362 5.320000e-13 86.1
5 TraesCS3D01G485500 chr3B 89.569 1045 94 6 1259 2293 779536423 779535384 0.000000e+00 1312.0
6 TraesCS3D01G485500 chr3B 84.938 644 86 6 1662 2295 779364500 779365142 2.520000e-180 641.0
7 TraesCS3D01G485500 chr3B 82.627 472 47 18 789 1234 779536965 779536503 4.690000e-103 385.0
8 TraesCS3D01G485500 chr3B 85.634 355 30 11 2660 2994 779365425 779365778 1.320000e-93 353.0
9 TraesCS3D01G485500 chr3B 84.758 269 19 13 208 463 779537538 779537279 1.780000e-62 250.0
10 TraesCS3D01G485500 chr3B 91.549 142 6 5 2 140 779537816 779537678 1.100000e-44 191.0
11 TraesCS3D01G485500 chr3B 89.333 150 10 5 2713 2860 779535100 779534955 1.840000e-42 183.0
12 TraesCS3D01G485500 chr3B 91.270 126 10 1 2507 2631 779535251 779535126 1.430000e-38 171.0
13 TraesCS3D01G485500 chr3B 85.443 158 17 6 2794 2947 779363974 779364129 3.090000e-35 159.0
14 TraesCS3D01G485500 chr4A 83.245 1319 153 42 1129 2398 709898872 709897573 0.000000e+00 1149.0
15 TraesCS3D01G485500 chr7A 84.571 1037 122 19 1126 2135 26421060 26420035 0.000000e+00 994.0
16 TraesCS3D01G485500 chr7A 96.154 52 2 0 627 678 33480383 33480332 5.320000e-13 86.1
17 TraesCS3D01G485500 chr7A 87.671 73 5 3 626 698 39777715 39777647 6.890000e-12 82.4
18 TraesCS3D01G485500 chr7A 87.671 73 5 3 626 698 39793989 39793921 6.890000e-12 82.4
19 TraesCS3D01G485500 chr7A 87.671 73 5 3 626 698 39809577 39809509 6.890000e-12 82.4
20 TraesCS3D01G485500 chr7D 86.743 875 101 10 1261 2135 25404152 25403293 0.000000e+00 959.0
21 TraesCS3D01G485500 chr7D 96.226 53 2 0 628 680 576654267 576654215 1.480000e-13 87.9
22 TraesCS3D01G485500 chr2B 88.462 78 7 2 257 332 416252946 416252869 3.180000e-15 93.5
23 TraesCS3D01G485500 chr1A 96.364 55 2 0 626 680 593410187 593410133 1.140000e-14 91.6
24 TraesCS3D01G485500 chr6A 94.444 54 3 0 627 680 479040034 479039981 1.920000e-12 84.2
25 TraesCS3D01G485500 chr4B 91.803 61 4 1 619 678 658659357 658659297 1.920000e-12 84.2
26 TraesCS3D01G485500 chr6D 88.406 69 4 3 614 680 445025522 445025588 2.480000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G485500 chr3D 582026403 582029400 2997 False 5537.000000 5537 100.000000 1 2998 1 chr3D.!!$F1 2997
1 TraesCS3D01G485500 chr3D 582130309 582132704 2395 True 316.025000 555 86.506500 1475 2998 4 chr3D.!!$R1 1523
2 TraesCS3D01G485500 chr3B 779534955 779537816 2861 True 415.333333 1312 88.184333 2 2860 6 chr3B.!!$R1 2858
3 TraesCS3D01G485500 chr3B 779363974 779365778 1804 False 384.333333 641 85.338333 1662 2994 3 chr3B.!!$F1 1332
4 TraesCS3D01G485500 chr4A 709897573 709898872 1299 True 1149.000000 1149 83.245000 1129 2398 1 chr4A.!!$R1 1269
5 TraesCS3D01G485500 chr7A 26420035 26421060 1025 True 994.000000 994 84.571000 1126 2135 1 chr7A.!!$R1 1009
6 TraesCS3D01G485500 chr7D 25403293 25404152 859 True 959.000000 959 86.743000 1261 2135 1 chr7D.!!$R1 874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 52 0.028242 GAAATCGCGCGAGAGAGAGA 59.972 55.0 36.99 12.77 44.9 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2297 0.105224 TCCGGCAAGACTTCGAAACA 59.895 50.0 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 33 3.242706 TGTCTCACAAAATGCGTTCACAG 60.243 43.478 0.00 0.00 0.00 3.66
46 49 0.524392 ACAGAAATCGCGCGAGAGAG 60.524 55.000 36.99 25.55 44.90 3.20
49 52 0.028242 GAAATCGCGCGAGAGAGAGA 59.972 55.000 36.99 12.77 44.90 3.10
141 146 1.142748 GCACCATCGGTCTCTCTGG 59.857 63.158 0.00 0.00 31.02 3.86
142 147 1.323271 GCACCATCGGTCTCTCTGGA 61.323 60.000 0.00 0.00 31.02 3.86
150 155 1.446966 GTCTCTCTGGAACGCAGGC 60.447 63.158 0.00 0.00 0.00 4.85
154 159 3.241530 TCTGGAACGCAGGCTGGT 61.242 61.111 17.64 9.68 0.00 4.00
181 205 4.044484 CTATCCCCTCGCCGCTCG 62.044 72.222 0.00 0.00 40.15 5.03
193 218 1.440938 GCCGCTCGCTCTCTTCTCTA 61.441 60.000 0.00 0.00 0.00 2.43
201 226 2.223479 CGCTCTCTTCTCTACTCTTGCC 60.223 54.545 0.00 0.00 0.00 4.52
288 364 2.501610 GCCTTCCCGGTAGAGCTG 59.498 66.667 0.00 0.00 34.25 4.24
359 442 1.280457 AAGGCTCCATCTTCTTCCGT 58.720 50.000 0.00 0.00 0.00 4.69
368 451 6.313744 TCCATCTTCTTCCGTTTCTTTTTC 57.686 37.500 0.00 0.00 0.00 2.29
369 452 6.062095 TCCATCTTCTTCCGTTTCTTTTTCT 58.938 36.000 0.00 0.00 0.00 2.52
370 453 6.546034 TCCATCTTCTTCCGTTTCTTTTTCTT 59.454 34.615 0.00 0.00 0.00 2.52
371 454 6.858478 CCATCTTCTTCCGTTTCTTTTTCTTC 59.142 38.462 0.00 0.00 0.00 2.87
463 550 2.611292 GGAGCGAGATGAAGGTTTGATG 59.389 50.000 0.00 0.00 0.00 3.07
465 552 4.433615 GAGCGAGATGAAGGTTTGATGTA 58.566 43.478 0.00 0.00 0.00 2.29
478 565 6.681777 AGGTTTGATGTAAACTTTCATGCTC 58.318 36.000 0.00 0.00 46.26 4.26
479 566 5.863935 GGTTTGATGTAAACTTTCATGCTCC 59.136 40.000 0.00 0.00 46.26 4.70
481 568 4.922206 TGATGTAAACTTTCATGCTCCCT 58.078 39.130 0.00 0.00 0.00 4.20
482 569 4.701651 TGATGTAAACTTTCATGCTCCCTG 59.298 41.667 0.00 0.00 0.00 4.45
484 571 4.072131 TGTAAACTTTCATGCTCCCTGTC 58.928 43.478 0.00 0.00 0.00 3.51
485 572 3.515602 AAACTTTCATGCTCCCTGTCT 57.484 42.857 0.00 0.00 0.00 3.41
486 573 2.486472 ACTTTCATGCTCCCTGTCTG 57.514 50.000 0.00 0.00 0.00 3.51
488 575 2.082231 CTTTCATGCTCCCTGTCTGTG 58.918 52.381 0.00 0.00 0.00 3.66
489 576 1.351076 TTCATGCTCCCTGTCTGTGA 58.649 50.000 0.00 0.00 0.00 3.58
491 578 0.900421 CATGCTCCCTGTCTGTGAGA 59.100 55.000 0.00 0.00 0.00 3.27
492 579 1.134759 CATGCTCCCTGTCTGTGAGAG 60.135 57.143 0.00 0.00 0.00 3.20
495 582 1.346068 GCTCCCTGTCTGTGAGAGTTT 59.654 52.381 0.00 0.00 0.00 2.66
496 583 2.611722 GCTCCCTGTCTGTGAGAGTTTC 60.612 54.545 0.00 0.00 0.00 2.78
497 584 1.971357 TCCCTGTCTGTGAGAGTTTCC 59.029 52.381 0.00 0.00 0.00 3.13
499 586 1.341531 CCTGTCTGTGAGAGTTTCCGT 59.658 52.381 0.00 0.00 0.00 4.69
501 588 2.028876 TGTCTGTGAGAGTTTCCGTGA 58.971 47.619 0.00 0.00 0.00 4.35
502 589 2.628178 TGTCTGTGAGAGTTTCCGTGAT 59.372 45.455 0.00 0.00 0.00 3.06
503 590 3.246619 GTCTGTGAGAGTTTCCGTGATC 58.753 50.000 0.00 0.00 0.00 2.92
504 591 2.095212 TCTGTGAGAGTTTCCGTGATCG 60.095 50.000 0.00 0.00 0.00 3.69
523 610 5.353956 TGATCGGGTGAATGTGAATTTACTG 59.646 40.000 1.75 0.00 0.00 2.74
525 612 4.693566 TCGGGTGAATGTGAATTTACTGTC 59.306 41.667 1.75 0.30 0.00 3.51
529 616 6.348540 GGGTGAATGTGAATTTACTGTCTGTC 60.349 42.308 1.75 0.00 0.00 3.51
532 619 7.587757 GTGAATGTGAATTTACTGTCTGTCAAC 59.412 37.037 1.75 0.00 0.00 3.18
539 626 8.902806 TGAATTTACTGTCTGTCAACAATTTCT 58.097 29.630 0.00 0.00 0.00 2.52
551 638 6.489700 TGTCAACAATTTCTGTGTATGTCCAT 59.510 34.615 0.00 0.00 38.67 3.41
552 639 6.803320 GTCAACAATTTCTGTGTATGTCCATG 59.197 38.462 0.00 0.00 38.67 3.66
556 643 7.114754 ACAATTTCTGTGTATGTCCATGAGAT 58.885 34.615 0.00 0.00 36.69 2.75
559 646 3.451902 TCTGTGTATGTCCATGAGATGCA 59.548 43.478 0.00 0.00 0.00 3.96
562 649 5.927819 TGTGTATGTCCATGAGATGCATAA 58.072 37.500 0.00 0.00 31.81 1.90
563 650 6.355747 TGTGTATGTCCATGAGATGCATAAA 58.644 36.000 0.00 0.00 31.81 1.40
564 651 6.999871 TGTGTATGTCCATGAGATGCATAAAT 59.000 34.615 0.00 0.00 31.81 1.40
565 652 8.156165 TGTGTATGTCCATGAGATGCATAAATA 58.844 33.333 0.00 0.00 31.81 1.40
566 653 9.002600 GTGTATGTCCATGAGATGCATAAATAA 57.997 33.333 0.00 0.00 31.81 1.40
587 739 9.788960 AAATAATTTTATTTGCTCTTCTCGGAC 57.211 29.630 7.34 0.00 40.70 4.79
590 742 2.393271 ATTTGCTCTTCTCGGACCAG 57.607 50.000 0.00 0.00 0.00 4.00
593 745 0.827925 TGCTCTTCTCGGACCAGTGT 60.828 55.000 0.00 0.00 0.00 3.55
595 747 1.248486 CTCTTCTCGGACCAGTGTCA 58.752 55.000 0.00 0.00 43.65 3.58
602 754 1.182667 CGGACCAGTGTCAGACCATA 58.817 55.000 0.00 0.00 43.65 2.74
604 756 1.135083 GGACCAGTGTCAGACCATACG 60.135 57.143 0.00 0.00 43.65 3.06
619 771 4.827692 ACCATACGCATGTTGAGTAGAAA 58.172 39.130 0.00 0.00 36.17 2.52
621 773 5.703592 ACCATACGCATGTTGAGTAGAAAAA 59.296 36.000 0.00 0.00 36.17 1.94
626 778 5.140177 CGCATGTTGAGTAGAAAAAGACAC 58.860 41.667 0.00 0.00 0.00 3.67
627 779 5.277297 CGCATGTTGAGTAGAAAAAGACACA 60.277 40.000 0.00 0.00 0.00 3.72
628 780 6.138761 GCATGTTGAGTAGAAAAAGACACAG 58.861 40.000 0.00 0.00 0.00 3.66
629 781 6.238484 GCATGTTGAGTAGAAAAAGACACAGT 60.238 38.462 0.00 0.00 0.00 3.55
630 782 7.679638 GCATGTTGAGTAGAAAAAGACACAGTT 60.680 37.037 0.00 0.00 0.00 3.16
634 786 6.551736 TGAGTAGAAAAAGACACAGTTTTGC 58.448 36.000 0.00 0.00 0.00 3.68
635 787 6.374333 TGAGTAGAAAAAGACACAGTTTTGCT 59.626 34.615 0.00 0.00 36.79 3.91
638 790 8.736244 AGTAGAAAAAGACACAGTTTTGCTAAA 58.264 29.630 0.00 0.00 36.96 1.85
639 791 9.010366 GTAGAAAAAGACACAGTTTTGCTAAAG 57.990 33.333 0.00 0.00 36.96 1.85
640 792 6.531594 AGAAAAAGACACAGTTTTGCTAAAGC 59.468 34.615 0.00 0.00 31.95 3.51
643 795 1.403679 ACACAGTTTTGCTAAAGCGCA 59.596 42.857 11.47 0.00 45.83 6.09
645 797 2.658325 CACAGTTTTGCTAAAGCGCATC 59.342 45.455 11.47 0.00 45.83 3.91
646 798 2.554032 ACAGTTTTGCTAAAGCGCATCT 59.446 40.909 11.47 0.00 45.83 2.90
648 800 4.142816 ACAGTTTTGCTAAAGCGCATCTAG 60.143 41.667 11.47 8.14 45.83 2.43
651 803 4.801147 TTTGCTAAAGCGCATCTAGATG 57.199 40.909 25.64 25.64 45.83 2.90
652 804 3.459232 TGCTAAAGCGCATCTAGATGT 57.541 42.857 28.92 14.60 45.83 3.06
661 813 3.657634 CGCATCTAGATGTGCCATAAGT 58.342 45.455 28.27 0.00 41.62 2.24
662 814 3.431233 CGCATCTAGATGTGCCATAAGTG 59.569 47.826 28.27 6.70 41.62 3.16
663 815 4.384056 GCATCTAGATGTGCCATAAGTGT 58.616 43.478 28.92 0.00 40.80 3.55
664 816 4.818546 GCATCTAGATGTGCCATAAGTGTT 59.181 41.667 28.92 0.00 40.80 3.32
665 817 5.277683 GCATCTAGATGTGCCATAAGTGTTG 60.278 44.000 28.92 4.75 40.80 3.33
666 818 4.191544 TCTAGATGTGCCATAAGTGTTGC 58.808 43.478 0.00 0.00 0.00 4.17
667 819 2.794103 AGATGTGCCATAAGTGTTGCA 58.206 42.857 0.00 0.00 0.00 4.08
672 824 1.818060 TGCCATAAGTGTTGCACATCC 59.182 47.619 2.01 0.00 36.74 3.51
673 825 1.818060 GCCATAAGTGTTGCACATCCA 59.182 47.619 2.01 0.00 36.74 3.41
674 826 2.230992 GCCATAAGTGTTGCACATCCAA 59.769 45.455 2.01 0.00 36.74 3.53
675 827 3.674138 GCCATAAGTGTTGCACATCCAAG 60.674 47.826 2.01 0.00 36.74 3.61
676 828 3.507233 CCATAAGTGTTGCACATCCAAGT 59.493 43.478 2.01 0.00 36.74 3.16
677 829 4.379813 CCATAAGTGTTGCACATCCAAGTC 60.380 45.833 2.01 0.00 36.74 3.01
678 830 1.609208 AGTGTTGCACATCCAAGTCC 58.391 50.000 2.01 0.00 36.74 3.85
679 831 1.143684 AGTGTTGCACATCCAAGTCCT 59.856 47.619 2.01 0.00 36.74 3.85
680 832 1.267806 GTGTTGCACATCCAAGTCCTG 59.732 52.381 0.00 0.00 34.08 3.86
699 851 5.047092 GTCCTGGATGTGGATCAAATTTTGT 60.047 40.000 8.89 0.00 35.87 2.83
702 857 6.071447 CCTGGATGTGGATCAAATTTTGTGTA 60.071 38.462 8.89 0.00 0.00 2.90
705 860 7.655328 TGGATGTGGATCAAATTTTGTGTAAAC 59.345 33.333 8.89 4.15 0.00 2.01
709 864 8.687242 TGTGGATCAAATTTTGTGTAAACTACA 58.313 29.630 8.89 1.19 36.08 2.74
715 870 4.904253 TTTTGTGTAAACTACAGTGCCC 57.096 40.909 0.00 0.00 39.77 5.36
720 875 0.672401 TAAACTACAGTGCCCTGCGC 60.672 55.000 0.00 0.00 42.81 6.09
728 883 3.057548 TGCCCTGCGCATGTTCTG 61.058 61.111 12.24 0.00 44.64 3.02
730 885 2.872557 CCCTGCGCATGTTCTGTG 59.127 61.111 12.24 0.00 38.45 3.66
731 886 1.968017 CCCTGCGCATGTTCTGTGT 60.968 57.895 12.24 0.00 37.69 3.72
733 888 1.208358 CTGCGCATGTTCTGTGTGG 59.792 57.895 12.24 0.00 37.69 4.17
734 889 1.227793 TGCGCATGTTCTGTGTGGA 60.228 52.632 5.66 0.00 37.69 4.02
735 890 1.229975 TGCGCATGTTCTGTGTGGAG 61.230 55.000 5.66 0.00 37.69 3.86
740 895 3.243035 CGCATGTTCTGTGTGGAGAAAAA 60.243 43.478 0.00 0.00 33.73 1.94
741 896 4.293415 GCATGTTCTGTGTGGAGAAAAAG 58.707 43.478 0.00 0.00 33.73 2.27
742 897 4.293415 CATGTTCTGTGTGGAGAAAAAGC 58.707 43.478 0.00 0.00 33.73 3.51
746 901 5.592282 TGTTCTGTGTGGAGAAAAAGCATTA 59.408 36.000 0.00 0.00 33.73 1.90
754 909 8.878769 GTGTGGAGAAAAAGCATTAAAAAGAAA 58.121 29.630 0.00 0.00 0.00 2.52
755 910 9.442047 TGTGGAGAAAAAGCATTAAAAAGAAAA 57.558 25.926 0.00 0.00 0.00 2.29
758 913 9.935682 GGAGAAAAAGCATTAAAAAGAAAAAGG 57.064 29.630 0.00 0.00 0.00 3.11
760 915 9.679661 AGAAAAAGCATTAAAAAGAAAAAGGGA 57.320 25.926 0.00 0.00 0.00 4.20
763 918 8.450578 AAAGCATTAAAAAGAAAAAGGGAAGG 57.549 30.769 0.00 0.00 0.00 3.46
766 921 6.533730 CATTAAAAAGAAAAAGGGAAGGGCT 58.466 36.000 0.00 0.00 0.00 5.19
767 922 4.689612 AAAAAGAAAAAGGGAAGGGCTC 57.310 40.909 0.00 0.00 0.00 4.70
783 938 2.121385 TCCCTCTGGAGTGCTGCT 59.879 61.111 0.00 0.00 35.03 4.24
784 939 1.986757 TCCCTCTGGAGTGCTGCTC 60.987 63.158 0.00 0.00 43.39 4.26
786 941 1.516892 CCTCTGGAGTGCTGCTCTC 59.483 63.158 20.33 20.33 43.62 3.20
790 945 3.604629 GGAGTGCTGCTCTCCGTA 58.395 61.111 28.64 0.00 43.62 4.02
791 946 1.435515 GGAGTGCTGCTCTCCGTAG 59.564 63.158 28.64 0.00 43.62 3.51
834 989 3.045634 TGTGGTTGAGGAAGAAAGAGGA 58.954 45.455 0.00 0.00 0.00 3.71
840 995 5.115480 GTTGAGGAAGAAAGAGGAGCATAG 58.885 45.833 0.00 0.00 0.00 2.23
847 1002 5.033589 AGAAAGAGGAGCATAGGTCATTG 57.966 43.478 0.00 0.00 0.00 2.82
850 1005 2.709934 AGAGGAGCATAGGTCATTGCAT 59.290 45.455 0.00 0.00 41.35 3.96
858 1016 4.410099 CATAGGTCATTGCATATTGGGGT 58.590 43.478 0.00 0.00 0.00 4.95
859 1017 5.569355 CATAGGTCATTGCATATTGGGGTA 58.431 41.667 0.00 0.00 0.00 3.69
860 1018 4.747265 AGGTCATTGCATATTGGGGTAT 57.253 40.909 0.00 0.00 0.00 2.73
863 1021 5.305128 AGGTCATTGCATATTGGGGTATTTG 59.695 40.000 0.00 0.00 0.00 2.32
878 1036 4.638865 GGGTATTTGGGTGTTAGTGATGAC 59.361 45.833 0.00 0.00 0.00 3.06
880 1038 1.803334 TTGGGTGTTAGTGATGACGC 58.197 50.000 0.00 0.00 0.00 5.19
884 1042 2.423577 GGTGTTAGTGATGACGCCTTT 58.576 47.619 0.00 0.00 41.93 3.11
885 1043 2.812011 GGTGTTAGTGATGACGCCTTTT 59.188 45.455 0.00 0.00 41.93 2.27
886 1044 3.998341 GGTGTTAGTGATGACGCCTTTTA 59.002 43.478 0.00 0.00 41.93 1.52
894 1052 4.451096 GTGATGACGCCTTTTAGTGAAAGA 59.549 41.667 8.88 0.00 46.24 2.52
897 1055 2.152016 ACGCCTTTTAGTGAAAGAGGC 58.848 47.619 8.88 8.78 46.24 4.70
901 1059 3.810743 GCCTTTTAGTGAAAGAGGCAGGA 60.811 47.826 12.88 0.00 46.24 3.86
919 1077 2.070783 GGACGAGTTAACGATTGGCAA 58.929 47.619 0.68 0.68 37.03 4.52
920 1078 2.676342 GGACGAGTTAACGATTGGCAAT 59.324 45.455 13.54 13.54 37.03 3.56
921 1079 3.866910 GGACGAGTTAACGATTGGCAATA 59.133 43.478 13.65 0.00 37.03 1.90
922 1080 4.510340 GGACGAGTTAACGATTGGCAATAT 59.490 41.667 13.65 5.35 37.03 1.28
923 1081 5.403897 ACGAGTTAACGATTGGCAATATG 57.596 39.130 13.65 11.29 37.03 1.78
924 1082 4.873827 ACGAGTTAACGATTGGCAATATGT 59.126 37.500 13.65 11.95 37.03 2.29
925 1083 5.353123 ACGAGTTAACGATTGGCAATATGTT 59.647 36.000 24.68 24.68 37.03 2.71
926 1084 6.128117 ACGAGTTAACGATTGGCAATATGTTT 60.128 34.615 25.78 14.32 37.03 2.83
927 1085 7.064847 ACGAGTTAACGATTGGCAATATGTTTA 59.935 33.333 25.78 18.31 37.03 2.01
928 1086 8.067784 CGAGTTAACGATTGGCAATATGTTTAT 58.932 33.333 25.78 16.34 35.09 1.40
929 1087 9.169468 GAGTTAACGATTGGCAATATGTTTATG 57.831 33.333 25.78 8.73 0.00 1.90
930 1088 8.898761 AGTTAACGATTGGCAATATGTTTATGA 58.101 29.630 25.78 12.19 0.00 2.15
931 1089 9.677567 GTTAACGATTGGCAATATGTTTATGAT 57.322 29.630 25.78 10.86 0.00 2.45
934 1092 8.621532 ACGATTGGCAATATGTTTATGATACT 57.378 30.769 13.65 0.00 0.00 2.12
935 1093 8.506437 ACGATTGGCAATATGTTTATGATACTG 58.494 33.333 13.65 0.00 0.00 2.74
936 1094 7.964559 CGATTGGCAATATGTTTATGATACTGG 59.035 37.037 13.65 0.00 0.00 4.00
937 1095 6.573664 TGGCAATATGTTTATGATACTGGC 57.426 37.500 0.00 0.00 0.00 4.85
938 1096 5.476599 TGGCAATATGTTTATGATACTGGCC 59.523 40.000 0.00 0.00 35.81 5.36
939 1097 5.476599 GGCAATATGTTTATGATACTGGCCA 59.523 40.000 4.71 4.71 35.36 5.36
942 1100 7.543172 GCAATATGTTTATGATACTGGCCAATG 59.457 37.037 7.01 0.00 0.00 2.82
943 1101 8.795513 CAATATGTTTATGATACTGGCCAATGA 58.204 33.333 7.01 0.00 0.00 2.57
944 1102 8.938801 ATATGTTTATGATACTGGCCAATGAA 57.061 30.769 7.01 0.00 0.00 2.57
945 1103 6.449635 TGTTTATGATACTGGCCAATGAAC 57.550 37.500 7.01 10.77 0.00 3.18
947 1105 7.342581 TGTTTATGATACTGGCCAATGAACTA 58.657 34.615 17.83 6.74 0.00 2.24
949 1107 8.682710 GTTTATGATACTGGCCAATGAACTAAA 58.317 33.333 7.01 5.08 0.00 1.85
950 1108 8.995027 TTATGATACTGGCCAATGAACTAAAT 57.005 30.769 7.01 0.00 0.00 1.40
951 1109 6.698008 TGATACTGGCCAATGAACTAAATG 57.302 37.500 7.01 0.00 0.00 2.32
952 1110 5.593909 TGATACTGGCCAATGAACTAAATGG 59.406 40.000 7.01 0.00 36.00 3.16
953 1111 3.099141 ACTGGCCAATGAACTAAATGGG 58.901 45.455 7.01 0.00 33.45 4.00
956 1114 2.625617 GGCCAATGAACTAAATGGGGGA 60.626 50.000 0.00 0.00 33.45 4.81
957 1115 3.103742 GCCAATGAACTAAATGGGGGAA 58.896 45.455 0.00 0.00 33.45 3.97
958 1116 3.517500 GCCAATGAACTAAATGGGGGAAA 59.482 43.478 0.00 0.00 33.45 3.13
959 1117 4.164030 GCCAATGAACTAAATGGGGGAAAT 59.836 41.667 0.00 0.00 33.45 2.17
960 1118 5.365314 GCCAATGAACTAAATGGGGGAAATA 59.635 40.000 0.00 0.00 33.45 1.40
962 1120 7.500141 CCAATGAACTAAATGGGGGAAATAAG 58.500 38.462 0.00 0.00 0.00 1.73
963 1121 6.731292 ATGAACTAAATGGGGGAAATAAGC 57.269 37.500 0.00 0.00 0.00 3.09
964 1122 5.837829 TGAACTAAATGGGGGAAATAAGCT 58.162 37.500 0.00 0.00 0.00 3.74
988 1166 2.158623 TGCCTGTCAACTGACCATTCTT 60.159 45.455 7.37 0.00 44.15 2.52
989 1167 2.227388 GCCTGTCAACTGACCATTCTTG 59.773 50.000 7.37 0.00 44.15 3.02
990 1168 3.480470 CCTGTCAACTGACCATTCTTGT 58.520 45.455 7.37 0.00 44.15 3.16
1011 1189 3.866703 TGGTGTTCCATGTTTCAGGTA 57.133 42.857 0.00 0.00 39.03 3.08
1016 1194 5.003804 GTGTTCCATGTTTCAGGTACAGAT 58.996 41.667 0.00 0.00 36.13 2.90
1023 1201 6.239289 CCATGTTTCAGGTACAGATTGGTTTT 60.239 38.462 0.00 0.00 0.00 2.43
1024 1202 6.142818 TGTTTCAGGTACAGATTGGTTTTG 57.857 37.500 0.00 0.00 0.00 2.44
1025 1203 5.654650 TGTTTCAGGTACAGATTGGTTTTGT 59.345 36.000 0.00 0.00 0.00 2.83
1065 1243 1.304381 GAGGGGTTTGGCAGCATCA 60.304 57.895 0.00 0.00 0.00 3.07
1066 1244 1.304713 AGGGGTTTGGCAGCATCAG 60.305 57.895 0.00 0.00 0.00 2.90
1081 1259 1.827344 CATCAGTGGGAGAGCTACACA 59.173 52.381 11.38 2.74 37.58 3.72
1141 1319 0.537188 TGGTAGTGCTCTAGCCTTGC 59.463 55.000 19.22 0.00 42.08 4.01
1168 1346 7.862873 TCTGATGTAGTATCACTAGATTTTGCG 59.137 37.037 0.00 0.00 35.17 4.85
1169 1347 6.923508 TGATGTAGTATCACTAGATTTTGCGG 59.076 38.462 0.00 0.00 35.17 5.69
1187 1365 4.149598 TGCGGCCTTCTATCTGTCTATTA 58.850 43.478 0.00 0.00 0.00 0.98
1195 1373 8.260818 GCCTTCTATCTGTCTATTATTGCCATA 58.739 37.037 0.00 0.00 0.00 2.74
1299 1531 3.328505 CACCAATTTCCATTCAGGCAAC 58.671 45.455 0.00 0.00 37.29 4.17
1316 1560 2.745100 CGGTGATGCTGCTGCTGT 60.745 61.111 17.00 5.48 40.48 4.40
1320 1564 1.673337 TGATGCTGCTGCTGTGGAC 60.673 57.895 17.00 2.95 40.48 4.02
1365 1609 3.054576 AGATTCTCCAGGGCATGATTCT 58.945 45.455 0.00 0.00 0.00 2.40
1371 1615 2.022195 CCAGGGCATGATTCTGACTTG 58.978 52.381 0.00 0.00 31.30 3.16
1451 1704 9.602568 TGATTTCCATGGTTATTGATTCATTTG 57.397 29.630 12.58 0.00 0.00 2.32
1468 1722 6.635166 TCATTTGTGAATCATGAATTTGCG 57.365 33.333 0.00 0.00 0.00 4.85
1470 1724 6.308524 TCATTTGTGAATCATGAATTTGCGTC 59.691 34.615 0.00 0.00 0.00 5.19
1471 1725 4.095410 TGTGAATCATGAATTTGCGTCC 57.905 40.909 0.00 0.00 0.00 4.79
1482 1736 4.507756 TGAATTTGCGTCCATATCGAAGAG 59.492 41.667 0.00 0.00 43.63 2.85
1680 1945 6.795114 CGTGCGAATAACAGTTTTCTTGTATT 59.205 34.615 0.00 0.00 0.00 1.89
1690 1955 8.506168 ACAGTTTTCTTGTATTGAGTTTCTCA 57.494 30.769 0.00 0.00 38.87 3.27
1763 2028 2.054232 TAGCTAGTCTTCCCGACAGG 57.946 55.000 0.00 0.00 45.32 4.00
1764 2029 0.039911 AGCTAGTCTTCCCGACAGGT 59.960 55.000 0.00 0.00 45.32 4.00
1911 2176 1.000955 GTCGACCAGAGGAAAGCAAGA 59.999 52.381 3.51 0.00 0.00 3.02
1940 2205 3.532641 ATTCCAAAGGACCTTCTGCTT 57.467 42.857 7.34 0.00 30.24 3.91
1964 2229 0.681887 TGCAGGAATGCCCAGATGTG 60.682 55.000 0.00 0.00 37.41 3.21
2030 2297 4.605640 AATGTAATTGCAAGCACCACTT 57.394 36.364 4.94 0.00 34.84 3.16
2043 2310 2.354821 GCACCACTTGTTTCGAAGTCTT 59.645 45.455 0.00 0.00 33.75 3.01
2048 2315 0.941542 TTGTTTCGAAGTCTTGCCGG 59.058 50.000 0.00 0.00 0.00 6.13
2141 2543 2.951642 CACCCTTTCTTTGCTCTGAACA 59.048 45.455 0.00 0.00 0.00 3.18
2169 2571 7.240674 TGTAAATTCGCAGTATGAATGACAAC 58.759 34.615 0.00 0.00 39.69 3.32
2219 2626 4.042311 TCCTGTTGTTCCTTTACCATGCTA 59.958 41.667 0.00 0.00 0.00 3.49
2220 2627 4.156008 CCTGTTGTTCCTTTACCATGCTAC 59.844 45.833 0.00 0.00 0.00 3.58
2231 2638 2.081462 ACCATGCTACGGTTTACTTGC 58.919 47.619 0.00 0.00 30.53 4.01
2232 2639 1.400494 CCATGCTACGGTTTACTTGCC 59.600 52.381 0.00 0.00 0.00 4.52
2235 2643 1.028330 GCTACGGTTTACTTGCCCCC 61.028 60.000 0.00 0.00 0.00 5.40
2275 2684 8.942338 TGTAGTGTATTGATATTTCCACTGAC 57.058 34.615 0.00 0.00 35.08 3.51
2279 2688 7.066284 AGTGTATTGATATTTCCACTGACTTGC 59.934 37.037 0.00 0.00 32.32 4.01
2284 2693 1.967319 TTTCCACTGACTTGCTCCAC 58.033 50.000 0.00 0.00 0.00 4.02
2302 2755 3.133542 TCCACTCTGGCATTCACTAGATG 59.866 47.826 0.00 0.00 37.47 2.90
2350 2804 3.826157 TGGAAGGTTCTGGCATTTTGTAG 59.174 43.478 0.00 0.00 0.00 2.74
2370 2824 5.415389 TGTAGTACTGACAATGCGGTAAGTA 59.585 40.000 5.39 0.00 34.29 2.24
2371 2825 5.593679 AGTACTGACAATGCGGTAAGTAT 57.406 39.130 0.00 0.00 37.14 2.12
2373 2827 4.737855 ACTGACAATGCGGTAAGTATCT 57.262 40.909 0.00 0.00 30.42 1.98
2375 2829 5.589192 ACTGACAATGCGGTAAGTATCTAC 58.411 41.667 0.00 0.00 30.42 2.59
2379 2833 5.589192 ACAATGCGGTAAGTATCTACAGTC 58.411 41.667 0.00 0.00 0.00 3.51
2380 2834 5.126545 ACAATGCGGTAAGTATCTACAGTCA 59.873 40.000 0.00 0.00 0.00 3.41
2381 2835 5.847111 ATGCGGTAAGTATCTACAGTCAA 57.153 39.130 0.00 0.00 0.00 3.18
2382 2836 5.244785 TGCGGTAAGTATCTACAGTCAAG 57.755 43.478 0.00 0.00 0.00 3.02
2383 2837 4.945543 TGCGGTAAGTATCTACAGTCAAGA 59.054 41.667 0.00 0.00 0.00 3.02
2384 2838 5.416639 TGCGGTAAGTATCTACAGTCAAGAA 59.583 40.000 0.00 0.00 0.00 2.52
2386 2840 5.964168 CGGTAAGTATCTACAGTCAAGAACG 59.036 44.000 0.00 0.00 0.00 3.95
2387 2841 5.742926 GGTAAGTATCTACAGTCAAGAACGC 59.257 44.000 0.00 0.00 0.00 4.84
2388 2842 5.386958 AAGTATCTACAGTCAAGAACGCA 57.613 39.130 0.00 0.00 0.00 5.24
2391 2845 6.398918 AGTATCTACAGTCAAGAACGCAAAT 58.601 36.000 0.00 0.00 0.00 2.32
2392 2846 4.990543 TCTACAGTCAAGAACGCAAATG 57.009 40.909 0.00 0.00 0.00 2.32
2393 2847 2.405892 ACAGTCAAGAACGCAAATGC 57.594 45.000 0.00 0.00 37.78 3.56
2394 2848 1.675483 ACAGTCAAGAACGCAAATGCA 59.325 42.857 6.18 0.00 42.21 3.96
2395 2849 2.287188 ACAGTCAAGAACGCAAATGCAG 60.287 45.455 6.18 1.33 42.21 4.41
2397 2851 3.058983 CAGTCAAGAACGCAAATGCAGTA 60.059 43.478 6.18 0.00 42.21 2.74
2399 2853 4.216257 AGTCAAGAACGCAAATGCAGTAAT 59.784 37.500 6.18 0.00 42.21 1.89
2400 2854 4.554973 GTCAAGAACGCAAATGCAGTAATC 59.445 41.667 6.18 1.26 42.21 1.75
2401 2855 3.389687 AGAACGCAAATGCAGTAATCG 57.610 42.857 6.18 0.00 42.21 3.34
2402 2856 1.840141 GAACGCAAATGCAGTAATCGC 59.160 47.619 6.18 0.00 42.21 4.58
2403 2857 0.801872 ACGCAAATGCAGTAATCGCA 59.198 45.000 6.18 0.00 44.94 5.10
2404 2858 1.202065 ACGCAAATGCAGTAATCGCAG 60.202 47.619 6.18 0.00 43.88 5.18
2405 2859 1.202065 CGCAAATGCAGTAATCGCAGT 60.202 47.619 6.18 0.00 43.88 4.40
2406 2860 2.030335 CGCAAATGCAGTAATCGCAGTA 59.970 45.455 6.18 0.00 43.88 2.74
2407 2861 3.354397 GCAAATGCAGTAATCGCAGTAC 58.646 45.455 0.00 0.00 43.88 2.73
2408 2862 3.063997 GCAAATGCAGTAATCGCAGTACT 59.936 43.478 0.00 0.00 43.88 2.73
2415 2869 3.499048 AGTAATCGCAGTACTGACAACG 58.501 45.455 27.08 19.01 30.52 4.10
2416 2870 1.068474 AATCGCAGTACTGACAACGC 58.932 50.000 27.08 8.80 0.00 4.84
2417 2871 1.071019 ATCGCAGTACTGACAACGCG 61.071 55.000 27.08 20.28 39.46 6.01
2418 2872 2.716828 CGCAGTACTGACAACGCGG 61.717 63.158 27.08 0.00 36.74 6.46
2419 2873 1.663702 GCAGTACTGACAACGCGGT 60.664 57.895 27.08 0.00 0.00 5.68
2420 2874 0.387622 GCAGTACTGACAACGCGGTA 60.388 55.000 27.08 0.00 0.00 4.02
2421 2875 1.931709 GCAGTACTGACAACGCGGTAA 60.932 52.381 27.08 0.00 31.84 2.85
2422 2876 1.983605 CAGTACTGACAACGCGGTAAG 59.016 52.381 18.45 4.51 31.84 2.34
2437 2892 5.210715 CGCGGTAAGTATCTACAGTTAAGG 58.789 45.833 0.00 0.00 0.00 2.69
2471 2926 9.899661 TGCAGTAGTACATATTTAATGAAACCT 57.100 29.630 2.52 0.00 0.00 3.50
2480 2935 9.566432 ACATATTTAATGAAACCTCTCATCTCC 57.434 33.333 0.00 0.00 34.90 3.71
2481 2936 9.790344 CATATTTAATGAAACCTCTCATCTCCT 57.210 33.333 0.00 0.00 34.90 3.69
2489 2944 2.235898 ACCTCTCATCTCCTTTGAGCAC 59.764 50.000 0.00 0.00 40.35 4.40
2493 2948 5.163322 CCTCTCATCTCCTTTGAGCACTTAT 60.163 44.000 0.00 0.00 40.35 1.73
2498 2953 6.327365 TCATCTCCTTTGAGCACTTATCCATA 59.673 38.462 0.00 0.00 38.58 2.74
2502 2957 7.500227 TCTCCTTTGAGCACTTATCCATATTTG 59.500 37.037 0.00 0.00 38.58 2.32
2505 2960 6.698008 TTGAGCACTTATCCATATTTGGTG 57.302 37.500 1.86 0.00 44.06 4.17
2525 2980 7.164230 TGGTGTTTTGTACAGACAGAAAATT 57.836 32.000 12.72 0.00 37.45 1.82
2526 2981 8.282455 TGGTGTTTTGTACAGACAGAAAATTA 57.718 30.769 12.72 0.00 37.45 1.40
2536 2991 7.295952 ACAGACAGAAAATTATAGTCTTGCG 57.704 36.000 0.00 0.00 37.45 4.85
2544 2999 2.871182 TATAGTCTTGCGTCAGCTGG 57.129 50.000 15.13 0.00 45.42 4.85
2546 3001 1.536073 TAGTCTTGCGTCAGCTGGCT 61.536 55.000 17.70 0.00 45.42 4.75
2631 3087 5.670485 CCCTACTGCTGTTAATGTGATGTA 58.330 41.667 0.09 0.00 0.00 2.29
2632 3088 6.291377 CCCTACTGCTGTTAATGTGATGTAT 58.709 40.000 0.09 0.00 0.00 2.29
2633 3089 6.767902 CCCTACTGCTGTTAATGTGATGTATT 59.232 38.462 0.09 0.00 0.00 1.89
2635 3091 7.712639 CCTACTGCTGTTAATGTGATGTATTCT 59.287 37.037 0.09 0.00 0.00 2.40
2636 3092 7.928307 ACTGCTGTTAATGTGATGTATTCTT 57.072 32.000 0.00 0.00 0.00 2.52
2637 3093 8.340618 ACTGCTGTTAATGTGATGTATTCTTT 57.659 30.769 0.00 0.00 0.00 2.52
2638 3094 8.796475 ACTGCTGTTAATGTGATGTATTCTTTT 58.204 29.630 0.00 0.00 0.00 2.27
2639 3095 9.630098 CTGCTGTTAATGTGATGTATTCTTTTT 57.370 29.630 0.00 0.00 0.00 1.94
2710 3166 3.181455 TGATAGTTGTTGGACTGCACACT 60.181 43.478 0.00 0.00 0.00 3.55
2711 3167 1.382522 AGTTGTTGGACTGCACACTG 58.617 50.000 0.00 0.00 0.00 3.66
2725 3181 3.314913 TGCACACTGTGTCAGTAAATTGG 59.685 43.478 11.12 0.00 43.43 3.16
2729 3185 3.058016 CACTGTGTCAGTAAATTGGCTGG 60.058 47.826 0.00 0.00 43.43 4.85
2737 3193 4.518970 TCAGTAAATTGGCTGGTTCTGTTC 59.481 41.667 8.94 0.00 33.81 3.18
2851 3310 2.024414 GGCTTGTGACTGTTGGTTTCT 58.976 47.619 0.00 0.00 0.00 2.52
2852 3311 2.223572 GGCTTGTGACTGTTGGTTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
2867 3326 4.009675 GGTTTCTGAGTGTTCATGCCATA 58.990 43.478 0.00 0.00 31.68 2.74
2886 3363 7.348033 TGCCATATATTCATGCTTGATCCATA 58.652 34.615 2.75 0.00 0.00 2.74
2891 3368 2.429478 TCATGCTTGATCCATATGCCG 58.571 47.619 0.00 0.00 0.00 5.69
2892 3369 1.135489 CATGCTTGATCCATATGCCGC 60.135 52.381 0.00 0.00 0.00 6.53
2902 3379 1.419374 CATATGCCGCCTTCTCGTAC 58.581 55.000 0.00 0.00 0.00 3.67
2914 3391 1.180456 TCTCGTACCCGTTTGGAGCA 61.180 55.000 0.00 0.00 37.49 4.26
2950 3427 9.169468 GTTTATATTCAGTGCCATTTATTGTCG 57.831 33.333 0.00 0.00 0.00 4.35
2962 3439 5.065474 CCATTTATTGTCGTATCCGTTTGGT 59.935 40.000 0.00 0.00 36.30 3.67
2973 3451 0.099791 CCGTTTGGTGCGTTTCTTGT 59.900 50.000 0.00 0.00 0.00 3.16
2995 3473 7.517614 TGTTGTTTCTATTCAGTGCCATTTA 57.482 32.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.202097 TCTGTGAACGCATTTTGTGAGA 58.798 40.909 0.00 0.00 0.00 3.27
11 12 3.607422 TCTGTGAACGCATTTTGTGAG 57.393 42.857 0.00 0.00 0.00 3.51
30 33 0.028242 TCTCTCTCTCGCGCGATTTC 59.972 55.000 34.86 0.00 0.00 2.17
128 131 0.965866 TGCGTTCCAGAGAGACCGAT 60.966 55.000 0.00 0.00 0.00 4.18
141 146 3.050275 GTGGACCAGCCTGCGTTC 61.050 66.667 0.00 0.00 37.63 3.95
142 147 4.988598 CGTGGACCAGCCTGCGTT 62.989 66.667 0.00 0.00 37.63 4.84
150 155 1.033574 GGATAGGAGTCGTGGACCAG 58.966 60.000 0.00 0.00 32.18 4.00
154 159 0.185416 GAGGGGATAGGAGTCGTGGA 59.815 60.000 0.00 0.00 0.00 4.02
161 166 3.686045 GCGGCGAGGGGATAGGAG 61.686 72.222 12.98 0.00 0.00 3.69
181 205 2.223479 CGGCAAGAGTAGAGAAGAGAGC 60.223 54.545 0.00 0.00 0.00 4.09
248 324 4.366684 CTGGTGGGGTTGGGAGGC 62.367 72.222 0.00 0.00 0.00 4.70
250 326 4.366684 GGCTGGTGGGGTTGGGAG 62.367 72.222 0.00 0.00 0.00 4.30
359 442 5.163416 CCAGCAAGGAAGGAAGAAAAAGAAA 60.163 40.000 0.00 0.00 41.22 2.52
368 451 1.539157 GGAACCAGCAAGGAAGGAAG 58.461 55.000 1.83 0.00 41.22 3.46
369 452 0.250727 CGGAACCAGCAAGGAAGGAA 60.251 55.000 1.83 0.00 41.22 3.36
370 453 1.374947 CGGAACCAGCAAGGAAGGA 59.625 57.895 1.83 0.00 41.22 3.36
371 454 0.955919 GACGGAACCAGCAAGGAAGG 60.956 60.000 1.83 0.00 41.22 3.46
442 525 2.386661 TCAAACCTTCATCTCGCTCC 57.613 50.000 0.00 0.00 0.00 4.70
454 541 6.294731 GGAGCATGAAAGTTTACATCAAACCT 60.295 38.462 0.00 0.00 46.55 3.50
463 550 4.154918 CAGACAGGGAGCATGAAAGTTTAC 59.845 45.833 0.00 0.00 0.00 2.01
465 552 3.152341 CAGACAGGGAGCATGAAAGTTT 58.848 45.455 0.00 0.00 0.00 2.66
471 558 0.900421 CTCACAGACAGGGAGCATGA 59.100 55.000 0.00 0.00 41.74 3.07
478 565 1.337260 CGGAAACTCTCACAGACAGGG 60.337 57.143 0.00 0.00 0.00 4.45
479 566 1.341531 ACGGAAACTCTCACAGACAGG 59.658 52.381 0.00 0.00 0.00 4.00
481 568 2.028876 TCACGGAAACTCTCACAGACA 58.971 47.619 0.00 0.00 0.00 3.41
482 569 2.795175 TCACGGAAACTCTCACAGAC 57.205 50.000 0.00 0.00 0.00 3.51
484 571 2.254459 CGATCACGGAAACTCTCACAG 58.746 52.381 0.00 0.00 35.72 3.66
485 572 2.347697 CGATCACGGAAACTCTCACA 57.652 50.000 0.00 0.00 35.72 3.58
497 584 1.720805 TTCACATTCACCCGATCACG 58.279 50.000 0.00 0.00 39.43 4.35
499 586 5.353956 CAGTAAATTCACATTCACCCGATCA 59.646 40.000 0.00 0.00 0.00 2.92
501 588 5.253330 ACAGTAAATTCACATTCACCCGAT 58.747 37.500 0.00 0.00 0.00 4.18
502 589 4.647611 ACAGTAAATTCACATTCACCCGA 58.352 39.130 0.00 0.00 0.00 5.14
503 590 4.695455 AGACAGTAAATTCACATTCACCCG 59.305 41.667 0.00 0.00 0.00 5.28
504 591 5.473504 ACAGACAGTAAATTCACATTCACCC 59.526 40.000 0.00 0.00 0.00 4.61
505 592 6.204688 TGACAGACAGTAAATTCACATTCACC 59.795 38.462 0.00 0.00 0.00 4.02
511 598 6.993786 TTGTTGACAGACAGTAAATTCACA 57.006 33.333 0.00 0.00 0.00 3.58
523 610 6.959361 ACATACACAGAAATTGTTGACAGAC 58.041 36.000 0.00 0.00 38.16 3.51
525 612 6.017192 TGGACATACACAGAAATTGTTGACAG 60.017 38.462 0.00 0.00 38.16 3.51
529 616 6.912082 TCATGGACATACACAGAAATTGTTG 58.088 36.000 0.00 0.00 38.16 3.33
532 619 6.990341 TCTCATGGACATACACAGAAATTG 57.010 37.500 0.00 0.00 0.00 2.32
539 626 3.910568 TGCATCTCATGGACATACACA 57.089 42.857 0.00 0.00 0.00 3.72
562 649 8.406297 GGTCCGAGAAGAGCAAATAAAATTATT 58.594 33.333 0.00 0.00 34.98 1.40
563 650 7.556275 TGGTCCGAGAAGAGCAAATAAAATTAT 59.444 33.333 0.00 0.00 41.08 1.28
564 651 6.882140 TGGTCCGAGAAGAGCAAATAAAATTA 59.118 34.615 0.00 0.00 41.08 1.40
565 652 5.710099 TGGTCCGAGAAGAGCAAATAAAATT 59.290 36.000 0.00 0.00 41.08 1.82
566 653 5.253330 TGGTCCGAGAAGAGCAAATAAAAT 58.747 37.500 0.00 0.00 41.08 1.82
569 656 3.260884 ACTGGTCCGAGAAGAGCAAATAA 59.739 43.478 0.00 0.00 43.22 1.40
587 739 0.246360 TGCGTATGGTCTGACACTGG 59.754 55.000 10.38 0.00 0.00 4.00
590 742 2.010145 ACATGCGTATGGTCTGACAC 57.990 50.000 18.03 0.00 38.66 3.67
593 745 2.233676 ACTCAACATGCGTATGGTCTGA 59.766 45.455 18.03 14.62 38.66 3.27
595 747 3.699538 TCTACTCAACATGCGTATGGTCT 59.300 43.478 18.03 0.00 38.66 3.85
602 754 4.814234 TGTCTTTTTCTACTCAACATGCGT 59.186 37.500 0.00 0.00 0.00 5.24
604 756 6.060028 TGTGTCTTTTTCTACTCAACATGC 57.940 37.500 0.00 0.00 0.00 4.06
619 771 4.351192 CGCTTTAGCAAAACTGTGTCTTT 58.649 39.130 2.29 0.00 42.21 2.52
621 773 2.287009 GCGCTTTAGCAAAACTGTGTCT 60.287 45.455 0.00 0.00 42.21 3.41
634 786 2.478134 GGCACATCTAGATGCGCTTTAG 59.522 50.000 33.33 16.86 44.02 1.85
635 787 2.158971 TGGCACATCTAGATGCGCTTTA 60.159 45.455 33.33 21.95 44.02 1.85
638 790 1.825341 TGGCACATCTAGATGCGCT 59.175 52.632 33.33 15.13 44.02 5.92
639 791 4.443857 TGGCACATCTAGATGCGC 57.556 55.556 29.50 29.50 43.88 6.09
672 824 3.354948 TTGATCCACATCCAGGACTTG 57.645 47.619 0.00 0.00 38.13 3.16
673 825 4.598036 ATTTGATCCACATCCAGGACTT 57.402 40.909 0.00 0.00 38.13 3.01
674 826 4.598036 AATTTGATCCACATCCAGGACT 57.402 40.909 0.00 0.00 38.13 3.85
675 827 5.047092 ACAAAATTTGATCCACATCCAGGAC 60.047 40.000 13.19 0.00 38.13 3.85
676 828 5.047164 CACAAAATTTGATCCACATCCAGGA 60.047 40.000 13.19 0.00 39.97 3.86
677 829 5.172934 CACAAAATTTGATCCACATCCAGG 58.827 41.667 13.19 0.00 0.00 4.45
678 830 5.786311 ACACAAAATTTGATCCACATCCAG 58.214 37.500 13.19 0.00 0.00 3.86
679 831 5.804944 ACACAAAATTTGATCCACATCCA 57.195 34.783 13.19 0.00 0.00 3.41
680 832 7.872483 AGTTTACACAAAATTTGATCCACATCC 59.128 33.333 13.19 0.00 0.00 3.51
684 836 9.180678 CTGTAGTTTACACAAAATTTGATCCAC 57.819 33.333 13.19 2.80 34.46 4.02
691 843 6.097696 AGGGCACTGTAGTTTACACAAAATTT 59.902 34.615 0.00 0.00 34.46 1.82
699 851 1.606994 CGCAGGGCACTGTAGTTTACA 60.607 52.381 19.18 0.00 46.62 2.41
702 857 1.966451 GCGCAGGGCACTGTAGTTT 60.966 57.895 19.18 0.00 46.62 2.66
715 870 1.208358 CCACACAGAACATGCGCAG 59.792 57.895 18.32 10.85 0.00 5.18
720 875 4.202040 TGCTTTTTCTCCACACAGAACATG 60.202 41.667 0.00 0.00 31.88 3.21
723 878 4.574599 ATGCTTTTTCTCCACACAGAAC 57.425 40.909 0.00 0.00 31.88 3.01
725 880 6.707440 TTTAATGCTTTTTCTCCACACAGA 57.293 33.333 0.00 0.00 0.00 3.41
726 881 7.706179 TCTTTTTAATGCTTTTTCTCCACACAG 59.294 33.333 0.00 0.00 0.00 3.66
728 883 8.419076 TTCTTTTTAATGCTTTTTCTCCACAC 57.581 30.769 0.00 0.00 0.00 3.82
733 888 9.935682 CCCTTTTTCTTTTTAATGCTTTTTCTC 57.064 29.630 0.00 0.00 0.00 2.87
734 889 9.679661 TCCCTTTTTCTTTTTAATGCTTTTTCT 57.320 25.926 0.00 0.00 0.00 2.52
740 895 6.533730 CCCTTCCCTTTTTCTTTTTAATGCT 58.466 36.000 0.00 0.00 0.00 3.79
741 896 5.181245 GCCCTTCCCTTTTTCTTTTTAATGC 59.819 40.000 0.00 0.00 0.00 3.56
742 897 6.533730 AGCCCTTCCCTTTTTCTTTTTAATG 58.466 36.000 0.00 0.00 0.00 1.90
746 901 3.391296 GGAGCCCTTCCCTTTTTCTTTTT 59.609 43.478 0.00 0.00 40.37 1.94
766 921 1.986757 GAGCAGCACTCCAGAGGGA 60.987 63.158 0.00 0.00 42.29 4.20
767 922 2.583520 GAGCAGCACTCCAGAGGG 59.416 66.667 0.00 0.00 39.75 4.30
786 941 1.518572 CAGTTGCTACCCGCTACGG 60.519 63.158 0.00 0.00 46.77 4.02
787 942 1.518572 CCAGTTGCTACCCGCTACG 60.519 63.158 0.00 0.00 46.77 3.51
788 943 0.179108 CTCCAGTTGCTACCCGCTAC 60.179 60.000 0.00 0.00 43.39 3.58
789 944 1.956629 GCTCCAGTTGCTACCCGCTA 61.957 60.000 0.00 0.00 40.11 4.26
790 945 2.982130 CTCCAGTTGCTACCCGCT 59.018 61.111 0.00 0.00 40.11 5.52
791 946 2.820037 GCTCCAGTTGCTACCCGC 60.820 66.667 0.00 0.00 39.77 6.13
792 947 1.448540 CTGCTCCAGTTGCTACCCG 60.449 63.158 0.00 0.00 0.00 5.28
793 948 1.746991 GCTGCTCCAGTTGCTACCC 60.747 63.158 0.00 0.00 33.43 3.69
795 950 0.801251 CAAGCTGCTCCAGTTGCTAC 59.199 55.000 1.00 0.00 35.09 3.58
796 951 0.397941 ACAAGCTGCTCCAGTTGCTA 59.602 50.000 1.00 0.00 35.09 3.49
797 952 1.150081 ACAAGCTGCTCCAGTTGCT 59.850 52.632 1.00 0.00 37.37 3.91
798 953 1.285023 CACAAGCTGCTCCAGTTGC 59.715 57.895 1.00 0.00 33.43 4.17
799 954 0.820891 ACCACAAGCTGCTCCAGTTG 60.821 55.000 1.00 0.00 33.43 3.16
800 955 0.106519 AACCACAAGCTGCTCCAGTT 60.107 50.000 1.00 2.06 33.43 3.16
801 956 0.820891 CAACCACAAGCTGCTCCAGT 60.821 55.000 1.00 0.00 33.43 4.00
802 957 0.535780 TCAACCACAAGCTGCTCCAG 60.536 55.000 1.00 0.00 34.12 3.86
803 958 0.535780 CTCAACCACAAGCTGCTCCA 60.536 55.000 1.00 0.00 0.00 3.86
834 989 4.084287 CCCAATATGCAATGACCTATGCT 58.916 43.478 0.00 0.00 42.97 3.79
840 995 5.511202 CCAAATACCCCAATATGCAATGACC 60.511 44.000 0.00 0.00 0.00 4.02
847 1002 3.304829 ACACCCAAATACCCCAATATGC 58.695 45.455 0.00 0.00 0.00 3.14
850 1005 5.253330 TCACTAACACCCAAATACCCCAATA 59.747 40.000 0.00 0.00 0.00 1.90
858 1016 3.936453 GCGTCATCACTAACACCCAAATA 59.064 43.478 0.00 0.00 0.00 1.40
859 1017 2.747446 GCGTCATCACTAACACCCAAAT 59.253 45.455 0.00 0.00 0.00 2.32
860 1018 2.147958 GCGTCATCACTAACACCCAAA 58.852 47.619 0.00 0.00 0.00 3.28
863 1021 0.249398 AGGCGTCATCACTAACACCC 59.751 55.000 0.00 0.00 0.00 4.61
878 1036 2.151202 TGCCTCTTTCACTAAAAGGCG 58.849 47.619 7.16 0.00 43.90 5.52
880 1038 3.753797 GTCCTGCCTCTTTCACTAAAAGG 59.246 47.826 0.00 0.00 43.88 3.11
884 1042 2.231478 CTCGTCCTGCCTCTTTCACTAA 59.769 50.000 0.00 0.00 0.00 2.24
885 1043 1.819288 CTCGTCCTGCCTCTTTCACTA 59.181 52.381 0.00 0.00 0.00 2.74
886 1044 0.605589 CTCGTCCTGCCTCTTTCACT 59.394 55.000 0.00 0.00 0.00 3.41
894 1052 1.183549 ATCGTTAACTCGTCCTGCCT 58.816 50.000 3.71 0.00 0.00 4.75
897 1055 1.659098 GCCAATCGTTAACTCGTCCTG 59.341 52.381 3.71 0.00 0.00 3.86
901 1059 4.873827 ACATATTGCCAATCGTTAACTCGT 59.126 37.500 3.71 0.00 0.00 4.18
919 1077 8.796475 GTTCATTGGCCAGTATCATAAACATAT 58.204 33.333 5.11 0.00 0.00 1.78
920 1078 7.998383 AGTTCATTGGCCAGTATCATAAACATA 59.002 33.333 5.11 0.00 0.00 2.29
921 1079 6.835488 AGTTCATTGGCCAGTATCATAAACAT 59.165 34.615 5.11 0.00 0.00 2.71
922 1080 6.186957 AGTTCATTGGCCAGTATCATAAACA 58.813 36.000 5.11 0.00 0.00 2.83
923 1081 6.699575 AGTTCATTGGCCAGTATCATAAAC 57.300 37.500 5.11 0.00 0.00 2.01
924 1082 8.815565 TTTAGTTCATTGGCCAGTATCATAAA 57.184 30.769 5.11 6.82 0.00 1.40
925 1083 8.849168 CATTTAGTTCATTGGCCAGTATCATAA 58.151 33.333 5.11 0.35 0.00 1.90
926 1084 7.448161 CCATTTAGTTCATTGGCCAGTATCATA 59.552 37.037 5.11 0.00 0.00 2.15
927 1085 6.266103 CCATTTAGTTCATTGGCCAGTATCAT 59.734 38.462 5.11 0.00 0.00 2.45
928 1086 5.593909 CCATTTAGTTCATTGGCCAGTATCA 59.406 40.000 5.11 0.00 0.00 2.15
929 1087 5.010012 CCCATTTAGTTCATTGGCCAGTATC 59.990 44.000 5.11 0.00 0.00 2.24
930 1088 4.895297 CCCATTTAGTTCATTGGCCAGTAT 59.105 41.667 5.11 0.00 0.00 2.12
931 1089 4.277476 CCCATTTAGTTCATTGGCCAGTA 58.723 43.478 5.11 0.00 0.00 2.74
932 1090 3.099141 CCCATTTAGTTCATTGGCCAGT 58.901 45.455 5.11 0.00 0.00 4.00
933 1091 2.431782 CCCCATTTAGTTCATTGGCCAG 59.568 50.000 5.11 0.00 0.00 4.85
934 1092 2.465813 CCCCATTTAGTTCATTGGCCA 58.534 47.619 0.00 0.00 0.00 5.36
935 1093 1.762370 CCCCCATTTAGTTCATTGGCC 59.238 52.381 0.00 0.00 0.00 5.36
936 1094 2.745968 TCCCCCATTTAGTTCATTGGC 58.254 47.619 0.00 0.00 0.00 4.52
937 1095 5.955961 ATTTCCCCCATTTAGTTCATTGG 57.044 39.130 0.00 0.00 0.00 3.16
938 1096 6.986231 GCTTATTTCCCCCATTTAGTTCATTG 59.014 38.462 0.00 0.00 0.00 2.82
939 1097 6.902974 AGCTTATTTCCCCCATTTAGTTCATT 59.097 34.615 0.00 0.00 0.00 2.57
942 1100 5.451937 GCAGCTTATTTCCCCCATTTAGTTC 60.452 44.000 0.00 0.00 0.00 3.01
943 1101 4.405680 GCAGCTTATTTCCCCCATTTAGTT 59.594 41.667 0.00 0.00 0.00 2.24
944 1102 3.960755 GCAGCTTATTTCCCCCATTTAGT 59.039 43.478 0.00 0.00 0.00 2.24
945 1103 4.038402 CAGCAGCTTATTTCCCCCATTTAG 59.962 45.833 0.00 0.00 0.00 1.85
947 1105 2.767960 CAGCAGCTTATTTCCCCCATTT 59.232 45.455 0.00 0.00 0.00 2.32
949 1107 2.031097 GCAGCAGCTTATTTCCCCCAT 61.031 52.381 0.00 0.00 37.91 4.00
950 1108 0.684153 GCAGCAGCTTATTTCCCCCA 60.684 55.000 0.00 0.00 37.91 4.96
951 1109 1.395045 GGCAGCAGCTTATTTCCCCC 61.395 60.000 0.00 0.00 41.70 5.40
952 1110 0.396278 AGGCAGCAGCTTATTTCCCC 60.396 55.000 0.00 0.00 41.70 4.81
953 1111 0.743097 CAGGCAGCAGCTTATTTCCC 59.257 55.000 0.00 0.00 41.70 3.97
956 1114 2.205022 TGACAGGCAGCAGCTTATTT 57.795 45.000 0.00 0.00 41.70 1.40
957 1115 1.815003 GTTGACAGGCAGCAGCTTATT 59.185 47.619 0.00 0.00 41.70 1.40
958 1116 1.004044 AGTTGACAGGCAGCAGCTTAT 59.996 47.619 0.00 0.00 41.70 1.73
959 1117 0.397941 AGTTGACAGGCAGCAGCTTA 59.602 50.000 0.00 0.00 41.70 3.09
960 1118 1.150081 AGTTGACAGGCAGCAGCTT 59.850 52.632 0.00 0.00 41.70 3.74
962 1120 1.598962 TCAGTTGACAGGCAGCAGC 60.599 57.895 0.00 0.00 41.10 5.25
963 1121 1.233285 GGTCAGTTGACAGGCAGCAG 61.233 60.000 13.73 0.00 46.47 4.24
964 1122 1.227943 GGTCAGTTGACAGGCAGCA 60.228 57.895 13.73 0.00 46.47 4.41
995 1173 5.106157 CCAATCTGTACCTGAAACATGGAAC 60.106 44.000 0.00 0.00 0.00 3.62
996 1174 5.009631 CCAATCTGTACCTGAAACATGGAA 58.990 41.667 0.00 0.00 0.00 3.53
1011 1189 2.299867 GGCCATCACAAAACCAATCTGT 59.700 45.455 0.00 0.00 0.00 3.41
1016 1194 2.045280 CCGGCCATCACAAAACCAA 58.955 52.632 2.24 0.00 0.00 3.67
1024 1202 4.899239 CTCGGAGCCGGCCATCAC 62.899 72.222 26.15 9.72 40.25 3.06
1043 1221 3.365265 CTGCCAAACCCCTCACGC 61.365 66.667 0.00 0.00 0.00 5.34
1065 1243 1.198713 CCATGTGTAGCTCTCCCACT 58.801 55.000 0.00 0.00 0.00 4.00
1066 1244 1.137872 CTCCATGTGTAGCTCTCCCAC 59.862 57.143 0.00 0.00 0.00 4.61
1081 1259 1.228063 GCGATGGTGATGCCTCCAT 60.228 57.895 0.00 0.00 46.18 3.41
1141 1319 9.190858 GCAAAATCTAGTGATACTACATCAGAG 57.809 37.037 0.00 0.00 31.70 3.35
1168 1346 5.877564 GGCAATAATAGACAGATAGAAGGCC 59.122 44.000 0.00 0.00 0.00 5.19
1169 1347 6.467677 TGGCAATAATAGACAGATAGAAGGC 58.532 40.000 0.00 0.00 0.00 4.35
1206 1384 8.409358 AATTAAGCAGAAACTTGTATCCAACT 57.591 30.769 0.00 0.00 0.00 3.16
1299 1531 2.745100 ACAGCAGCAGCATCACCG 60.745 61.111 3.17 0.00 45.49 4.94
1316 1560 0.617535 ACCCCAGACATCATCGTCCA 60.618 55.000 0.00 0.00 36.52 4.02
1320 1564 1.875009 CATCACCCCAGACATCATCG 58.125 55.000 0.00 0.00 0.00 3.84
1365 1609 4.074970 GCTCCCATTCTCTTTTCAAGTCA 58.925 43.478 0.00 0.00 0.00 3.41
1371 1615 2.751806 CCTGTGCTCCCATTCTCTTTTC 59.248 50.000 0.00 0.00 0.00 2.29
1386 1630 1.860484 GAAACTGCTCCTGCCTGTGC 61.860 60.000 0.00 0.00 38.71 4.57
1428 1672 8.591940 TCACAAATGAATCAATAACCATGGAAA 58.408 29.630 21.47 5.93 0.00 3.13
1446 1690 6.397831 ACGCAAATTCATGATTCACAAATG 57.602 33.333 0.00 0.00 0.00 2.32
1450 1703 3.505293 TGGACGCAAATTCATGATTCACA 59.495 39.130 0.00 0.00 0.00 3.58
1451 1704 4.095410 TGGACGCAAATTCATGATTCAC 57.905 40.909 0.00 0.00 0.00 3.18
1468 1722 6.737254 TTTTCAAACCTCTTCGATATGGAC 57.263 37.500 5.31 0.00 0.00 4.02
1470 1724 8.345565 CCTTATTTTCAAACCTCTTCGATATGG 58.654 37.037 0.00 0.00 0.00 2.74
1471 1725 7.857885 GCCTTATTTTCAAACCTCTTCGATATG 59.142 37.037 0.00 0.00 0.00 1.78
1482 1736 6.935741 AACCAAAAGCCTTATTTTCAAACC 57.064 33.333 0.00 0.00 30.01 3.27
1603 1858 2.076863 GAACGAGACCCCACTTGAATG 58.923 52.381 0.00 0.00 0.00 2.67
1680 1945 5.857268 TGAGAATGACACATGAGAAACTCA 58.143 37.500 0.00 3.95 44.99 3.41
1724 1989 1.531423 ATGCACTGCTTGAAGGACAG 58.469 50.000 1.98 0.00 37.45 3.51
1763 2028 5.171516 GTCGAGCAGCAACTTTTCTTTTAAC 59.828 40.000 0.00 0.00 0.00 2.01
1764 2029 5.270853 GTCGAGCAGCAACTTTTCTTTTAA 58.729 37.500 0.00 0.00 0.00 1.52
1853 2118 1.738350 CTCTCATGAAACAGCTGCAGG 59.262 52.381 17.12 5.84 0.00 4.85
1911 2176 5.536497 AGGTCCTTTGGAATAGTTTGGAT 57.464 39.130 0.00 0.00 31.38 3.41
1964 2229 5.050363 TCGTTTCAACTCTTCACTAACATGC 60.050 40.000 0.00 0.00 0.00 4.06
2005 2270 5.010516 AGTGGTGCTTGCAATTACATTTACA 59.989 36.000 0.00 0.00 0.00 2.41
2030 2297 0.105224 TCCGGCAAGACTTCGAAACA 59.895 50.000 0.00 0.00 0.00 2.83
2043 2310 1.035385 TCAGTCTAAGCGATCCGGCA 61.035 55.000 0.00 0.00 34.64 5.69
2048 2315 5.034152 CAGAAGAACTCAGTCTAAGCGATC 58.966 45.833 0.00 0.00 0.00 3.69
2111 2513 3.191371 GCAAAGAAAGGGTGACACCATAG 59.809 47.826 25.75 7.09 41.02 2.23
2141 2543 6.037172 GTCATTCATACTGCGAATTTACAGGT 59.963 38.462 11.88 2.86 38.25 4.00
2169 2571 9.011095 AGATGCCAAACTCATGAGATATTATTG 57.989 33.333 29.27 19.39 0.00 1.90
2189 2596 2.206576 AGGAACAACAGGAAGATGCC 57.793 50.000 0.00 0.00 0.00 4.40
2219 2626 0.538746 CAAGGGGGCAAGTAAACCGT 60.539 55.000 0.00 0.00 0.00 4.83
2220 2627 1.248101 CCAAGGGGGCAAGTAAACCG 61.248 60.000 0.00 0.00 0.00 4.44
2254 2662 7.066284 AGCAAGTCAGTGGAAATATCAATACAC 59.934 37.037 0.00 0.00 0.00 2.90
2275 2684 1.093159 GAATGCCAGAGTGGAGCAAG 58.907 55.000 0.00 0.00 40.96 4.01
2279 2688 2.762887 TCTAGTGAATGCCAGAGTGGAG 59.237 50.000 0.00 0.00 40.96 3.86
2284 2693 5.021033 AGAACATCTAGTGAATGCCAGAG 57.979 43.478 0.00 0.00 0.00 3.35
2324 2777 4.980339 AAATGCCAGAACCTTCCAAAAT 57.020 36.364 0.00 0.00 0.00 1.82
2330 2784 5.705905 AGTACTACAAAATGCCAGAACCTTC 59.294 40.000 0.00 0.00 0.00 3.46
2333 2787 5.001232 TCAGTACTACAAAATGCCAGAACC 58.999 41.667 0.00 0.00 0.00 3.62
2334 2788 5.468746 TGTCAGTACTACAAAATGCCAGAAC 59.531 40.000 0.00 0.00 0.00 3.01
2350 2804 5.589192 AGATACTTACCGCATTGTCAGTAC 58.411 41.667 0.00 0.00 30.17 2.73
2370 2824 4.142816 GCATTTGCGTTCTTGACTGTAGAT 60.143 41.667 0.00 0.00 0.00 1.98
2371 2825 3.186409 GCATTTGCGTTCTTGACTGTAGA 59.814 43.478 0.00 0.00 0.00 2.59
2373 2827 2.875317 TGCATTTGCGTTCTTGACTGTA 59.125 40.909 0.00 0.00 45.83 2.74
2375 2829 2.287188 ACTGCATTTGCGTTCTTGACTG 60.287 45.455 0.00 0.00 45.83 3.51
2379 2833 3.539563 CGATTACTGCATTTGCGTTCTTG 59.460 43.478 0.00 0.00 45.83 3.02
2380 2834 3.747193 CGATTACTGCATTTGCGTTCTT 58.253 40.909 0.00 0.00 45.83 2.52
2381 2835 2.476185 GCGATTACTGCATTTGCGTTCT 60.476 45.455 0.00 0.00 45.83 3.01
2382 2836 1.840141 GCGATTACTGCATTTGCGTTC 59.160 47.619 0.00 0.00 45.83 3.95
2383 2837 1.198867 TGCGATTACTGCATTTGCGTT 59.801 42.857 0.00 0.00 45.83 4.84
2384 2838 0.801872 TGCGATTACTGCATTTGCGT 59.198 45.000 0.00 2.21 45.83 5.24
2386 2840 2.549633 ACTGCGATTACTGCATTTGC 57.450 45.000 0.00 0.00 42.32 3.68
2387 2841 4.329801 TCAGTACTGCGATTACTGCATTTG 59.670 41.667 18.45 0.00 44.18 2.32
2388 2842 4.330074 GTCAGTACTGCGATTACTGCATTT 59.670 41.667 18.45 0.00 44.18 2.32
2391 2845 2.230266 TGTCAGTACTGCGATTACTGCA 59.770 45.455 18.45 10.91 44.18 4.41
2392 2846 2.876091 TGTCAGTACTGCGATTACTGC 58.124 47.619 18.45 9.13 44.18 4.40
2393 2847 3.300853 CGTTGTCAGTACTGCGATTACTG 59.699 47.826 18.45 11.22 45.36 2.74
2394 2848 3.499048 CGTTGTCAGTACTGCGATTACT 58.501 45.455 18.45 0.00 0.00 2.24
2395 2849 2.027688 GCGTTGTCAGTACTGCGATTAC 59.972 50.000 18.45 11.00 0.00 1.89
2397 2851 1.068474 GCGTTGTCAGTACTGCGATT 58.932 50.000 18.45 0.00 0.00 3.34
2399 2853 1.728074 CGCGTTGTCAGTACTGCGA 60.728 57.895 18.45 10.17 41.58 5.10
2400 2854 2.716828 CCGCGTTGTCAGTACTGCG 61.717 63.158 18.45 16.03 40.01 5.18
2401 2855 0.387622 TACCGCGTTGTCAGTACTGC 60.388 55.000 18.45 13.34 0.00 4.40
2402 2856 1.983605 CTTACCGCGTTGTCAGTACTG 59.016 52.381 17.17 17.17 0.00 2.74
2403 2857 1.610522 ACTTACCGCGTTGTCAGTACT 59.389 47.619 4.92 0.00 0.00 2.73
2404 2858 2.056094 ACTTACCGCGTTGTCAGTAC 57.944 50.000 4.92 0.00 0.00 2.73
2405 2859 3.691118 AGATACTTACCGCGTTGTCAGTA 59.309 43.478 4.92 8.59 31.53 2.74
2406 2860 2.490903 AGATACTTACCGCGTTGTCAGT 59.509 45.455 4.92 6.47 0.00 3.41
2407 2861 3.146618 AGATACTTACCGCGTTGTCAG 57.853 47.619 4.92 0.00 0.00 3.51
2408 2862 3.439825 TGTAGATACTTACCGCGTTGTCA 59.560 43.478 4.92 0.00 0.00 3.58
2409 2863 4.019919 TGTAGATACTTACCGCGTTGTC 57.980 45.455 4.92 0.00 0.00 3.18
2410 2864 3.441572 ACTGTAGATACTTACCGCGTTGT 59.558 43.478 4.92 0.00 0.00 3.32
2411 2865 4.025015 ACTGTAGATACTTACCGCGTTG 57.975 45.455 4.92 0.00 0.00 4.10
2412 2866 4.708726 AACTGTAGATACTTACCGCGTT 57.291 40.909 4.92 0.00 0.00 4.84
2413 2867 5.220931 CCTTAACTGTAGATACTTACCGCGT 60.221 44.000 4.92 0.00 0.00 6.01
2414 2868 5.008019 TCCTTAACTGTAGATACTTACCGCG 59.992 44.000 0.00 0.00 0.00 6.46
2415 2869 6.382869 TCCTTAACTGTAGATACTTACCGC 57.617 41.667 0.00 0.00 0.00 5.68
2416 2870 6.862090 GCATCCTTAACTGTAGATACTTACCG 59.138 42.308 0.00 0.00 0.00 4.02
2417 2871 7.723324 TGCATCCTTAACTGTAGATACTTACC 58.277 38.462 0.00 0.00 0.00 2.85
2418 2872 9.595823 TTTGCATCCTTAACTGTAGATACTTAC 57.404 33.333 0.00 0.00 0.00 2.34
2420 2874 9.113838 CATTTGCATCCTTAACTGTAGATACTT 57.886 33.333 0.00 0.00 0.00 2.24
2421 2875 7.227512 GCATTTGCATCCTTAACTGTAGATACT 59.772 37.037 0.00 0.00 41.59 2.12
2422 2876 7.355778 GCATTTGCATCCTTAACTGTAGATAC 58.644 38.462 0.00 0.00 41.59 2.24
2454 2909 9.566432 GGAGATGAGAGGTTTCATTAAATATGT 57.434 33.333 0.00 0.00 37.90 2.29
2455 2910 9.790344 AGGAGATGAGAGGTTTCATTAAATATG 57.210 33.333 0.00 0.00 37.90 1.78
2458 2913 8.964772 CAAAGGAGATGAGAGGTTTCATTAAAT 58.035 33.333 0.00 0.00 37.90 1.40
2459 2914 8.163408 TCAAAGGAGATGAGAGGTTTCATTAAA 58.837 33.333 0.00 0.00 37.90 1.52
2460 2915 7.689299 TCAAAGGAGATGAGAGGTTTCATTAA 58.311 34.615 0.00 0.00 37.90 1.40
2461 2916 7.257790 TCAAAGGAGATGAGAGGTTTCATTA 57.742 36.000 0.00 0.00 37.90 1.90
2462 2917 6.131972 TCAAAGGAGATGAGAGGTTTCATT 57.868 37.500 0.00 0.00 37.90 2.57
2463 2918 5.743117 CTCAAAGGAGATGAGAGGTTTCAT 58.257 41.667 0.00 0.00 45.74 2.57
2464 2919 4.564406 GCTCAAAGGAGATGAGAGGTTTCA 60.564 45.833 7.67 0.00 45.74 2.69
2465 2920 3.938334 GCTCAAAGGAGATGAGAGGTTTC 59.062 47.826 7.67 0.00 45.74 2.78
2466 2921 3.328931 TGCTCAAAGGAGATGAGAGGTTT 59.671 43.478 7.67 0.00 45.74 3.27
2467 2922 2.909006 TGCTCAAAGGAGATGAGAGGTT 59.091 45.455 7.67 0.00 45.74 3.50
2468 2923 2.235898 GTGCTCAAAGGAGATGAGAGGT 59.764 50.000 7.67 0.00 45.74 3.85
2469 2924 2.500910 AGTGCTCAAAGGAGATGAGAGG 59.499 50.000 7.67 0.00 45.74 3.69
2470 2925 3.891422 AGTGCTCAAAGGAGATGAGAG 57.109 47.619 7.67 0.00 45.74 3.20
2471 2926 5.163364 GGATAAGTGCTCAAAGGAGATGAGA 60.163 44.000 7.67 0.00 45.74 3.27
2472 2927 5.055812 GGATAAGTGCTCAAAGGAGATGAG 58.944 45.833 0.00 0.00 44.26 2.90
2473 2928 4.471025 TGGATAAGTGCTCAAAGGAGATGA 59.529 41.667 0.00 0.00 44.26 2.92
2474 2929 4.774124 TGGATAAGTGCTCAAAGGAGATG 58.226 43.478 0.00 0.00 44.26 2.90
2475 2930 5.643421 ATGGATAAGTGCTCAAAGGAGAT 57.357 39.130 0.00 0.00 44.26 2.75
2476 2931 6.753913 ATATGGATAAGTGCTCAAAGGAGA 57.246 37.500 0.00 0.00 44.26 3.71
2477 2932 7.646314 CAAATATGGATAAGTGCTCAAAGGAG 58.354 38.462 0.00 0.00 44.33 3.69
2493 2948 6.773200 TGTCTGTACAAAACACCAAATATGGA 59.227 34.615 1.10 0.00 40.61 3.41
2498 2953 6.767524 TTCTGTCTGTACAAAACACCAAAT 57.232 33.333 6.64 0.00 34.49 2.32
2525 2980 1.202417 GCCAGCTGACGCAAGACTATA 60.202 52.381 17.39 0.00 43.62 1.31
2526 2981 0.460987 GCCAGCTGACGCAAGACTAT 60.461 55.000 17.39 0.00 43.62 2.12
2544 2999 4.032900 CAGATTTGAATGCATTTGCTGAGC 59.967 41.667 14.33 0.00 42.66 4.26
2546 3001 3.930229 GCAGATTTGAATGCATTTGCTGA 59.070 39.130 19.45 4.82 42.11 4.26
2642 3098 9.513906 TCAGAATACATCACATTAACCTTTCAA 57.486 29.630 0.00 0.00 0.00 2.69
2643 3099 9.685276 ATCAGAATACATCACATTAACCTTTCA 57.315 29.630 0.00 0.00 0.00 2.69
2661 3117 9.337714 TGGACCATCAAAGGATATATCAGAATA 57.662 33.333 14.60 0.00 30.87 1.75
2664 3120 7.458806 TCATGGACCATCAAAGGATATATCAGA 59.541 37.037 14.60 6.90 30.87 3.27
2684 3140 3.008923 TGCAGTCCAACAACTATCATGGA 59.991 43.478 0.00 0.00 39.57 3.41
2710 3166 3.222173 ACCAGCCAATTTACTGACACA 57.778 42.857 6.12 0.00 35.90 3.72
2711 3167 3.821033 AGAACCAGCCAATTTACTGACAC 59.179 43.478 6.12 0.00 35.90 3.67
2851 3310 6.072342 GCATGAATATATGGCATGAACACTCA 60.072 38.462 23.09 5.84 41.35 3.41
2852 3311 6.150641 AGCATGAATATATGGCATGAACACTC 59.849 38.462 23.09 10.80 41.35 3.51
2867 3326 5.298527 CGGCATATGGATCAAGCATGAATAT 59.701 40.000 4.56 0.00 39.49 1.28
2886 3363 2.499685 GGTACGAGAAGGCGGCAT 59.500 61.111 13.08 0.00 35.12 4.40
2891 3368 1.017701 CCAAACGGGTACGAGAAGGC 61.018 60.000 0.00 0.00 44.60 4.35
2892 3369 0.604578 TCCAAACGGGTACGAGAAGG 59.395 55.000 0.00 0.00 44.60 3.46
2902 3379 2.352503 CAAGAAATGCTCCAAACGGG 57.647 50.000 0.00 0.00 38.37 5.28
2914 3391 7.093814 TGGCACTGAATATAAACAGCAAGAAAT 60.094 33.333 8.72 0.00 37.61 2.17
2928 3405 6.942532 ACGACAATAAATGGCACTGAATAT 57.057 33.333 0.00 0.00 36.57 1.28
2950 3427 1.802365 AGAAACGCACCAAACGGATAC 59.198 47.619 0.00 0.00 34.00 2.24
2962 3439 6.125327 TGAATAGAAACAACAAGAAACGCA 57.875 33.333 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.