AutoCloner

Multiple sequence alignment - TraesCS3D01G485200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G485200	chr3D	100.000	3101	0	0	1	3101	581990509	581987409	0.000000e+00	5727.0
1	TraesCS3D01G485200	chr3D	75.809	711	135	24	1410	2106	582107701	582107014	2.980000e-85	326.0
2	TraesCS3D01G485200	chr3D	75.130	768	148	25	1355	2108	582793064	582793802	1.390000e-83	320.0
3	TraesCS3D01G485200	chr3D	82.123	358	50	8	982	1337	582108164	582107819	8.410000e-76	294.0
4	TraesCS3D01G485200	chr3D	81.143	350	57	6	998	1338	582792644	582792993	3.940000e-69	272.0
5	TraesCS3D01G485200	chr3D	79.661	354	57	10	994	1332	580367932	580368285	1.110000e-59	241.0
6	TraesCS3D01G485200	chr3D	83.249	197	33	0	1130	1326	582733843	582734039	6.830000e-42	182.0
7	TraesCS3D01G485200	chr3B	88.412	1769	119	35	583	2317	779567629	779569345	0.000000e+00	2052.0
8	TraesCS3D01G485200	chr3B	87.256	1483	139	23	837	2292	725118838	725117379	0.000000e+00	1646.0
9	TraesCS3D01G485200	chr3B	89.155	793	54	18	2316	3099	749989891	749989122	0.000000e+00	959.0
10	TraesCS3D01G485200	chr3B	92.361	432	26	5	82	510	725120536	725120109	2.640000e-170	608.0
11	TraesCS3D01G485200	chr3B	92.260	323	23	2	1	321	779566815	779567137	1.010000e-124	457.0
12	TraesCS3D01G485200	chr3B	76.291	949	171	35	1131	2049	786043756	786042832	1.010000e-124	457.0
13	TraesCS3D01G485200	chr3B	75.291	773	144	27	1344	2103	779510648	779511386	2.980000e-85	326.0
14	TraesCS3D01G485200	chr3B	75.843	712	131	22	1410	2108	778490607	778489924	1.070000e-84	324.0
15	TraesCS3D01G485200	chr3B	86.099	223	28	2	1127	1349	779510368	779510587	1.440000e-58	237.0
16	TraesCS3D01G485200	chr3B	85.366	205	30	0	1130	1334	778490944	778490740	2.420000e-51	213.0
17	TraesCS3D01G485200	chr3B	90.647	139	12	1	689	827	725119024	725118887	1.900000e-42	183.0
18	TraesCS3D01G485200	chr3B	98.148	54	1	0	1	54	725120593	725120540	9.150000e-16	95.3
19	TraesCS3D01G485200	chr3B	96.000	50	1	1	592	641	725119070	725119022	2.560000e-11	80.5
20	TraesCS3D01G485200	chr7D	91.688	794	53	11	2314	3101	426556019	426556805	0.000000e+00	1088.0
21	TraesCS3D01G485200	chr7D	74.715	526	80	31	2601	3100	106391272	106390774	5.280000e-43	185.0
22	TraesCS3D01G485200	chr4A	89.773	792	74	4	2314	3101	595776376	595777164	0.000000e+00	1007.0
23	TraesCS3D01G485200	chr4A	89.734	789	72	6	2316	3101	616716925	616716143	0.000000e+00	1000.0
24	TraesCS3D01G485200	chr4A	86.043	738	56	27	2316	3023	625972501	625971781	0.000000e+00	749.0
25	TraesCS3D01G485200	chr3A	90.052	774	64	10	2338	3101	710344589	710343819	0.000000e+00	990.0
26	TraesCS3D01G485200	chr3A	90.052	774	64	10	2338	3101	710405446	710404676	0.000000e+00	990.0
27	TraesCS3D01G485200	chr3A	89.780	773	66	10	2338	3100	710465479	710464710	0.000000e+00	977.0
28	TraesCS3D01G485200	chr3A	87.358	791	65	14	2316	3101	657092214	657092974	0.000000e+00	874.0
29	TraesCS3D01G485200	chr3A	76.005	796	133	35	1134	1906	715738522	715739282	2.940000e-95	359.0
30	TraesCS3D01G485200	chr4D	92.109	697	43	9	2316	3008	503910099	503910787	0.000000e+00	972.0
31	TraesCS3D01G485200	chr7A	86.470	813	74	24	2311	3101	75616121	75615323	0.000000e+00	859.0
32	TraesCS3D01G485200	chr7A	100.000	32	0	0	705	736	549748565	549748534	3.340000e-05	60.2
33	TraesCS3D01G485200	chr5D	86.426	803	52	24	2314	3101	269732651	269733411	0.000000e+00	826.0
34	TraesCS3D01G485200	chrUn	75.484	775	136	35	1355	2108	41505968	41506709	2.310000e-86	329.0
35	TraesCS3D01G485200	chrUn	75.596	713	131	24	1410	2108	41525573	41526256	2.320000e-81	313.0
36	TraesCS3D01G485200	chr5A	94.595	37	2	0	705	741	135141256	135141220	1.200000e-04	58.4
37	TraesCS3D01G485200	chr2D	100.000	30	0	0	705	734	553332821	553332850	4.320000e-04	56.5
38	TraesCS3D01G485200	chr2B	100.000	30	0	0	705	734	64765717	64765746	4.320000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G485200	chr3D	581987409	581990509	3100	True	5727.00	5727	100.0000	1	3101	1	chr3D.!!$R1	3100
1	TraesCS3D01G485200	chr3D	582107014	582108164	1150	True	310.00	326	78.9660	982	2106	2	chr3D.!!$R2	1124
2	TraesCS3D01G485200	chr3D	582792644	582793802	1158	False	296.00	320	78.1365	998	2108	2	chr3D.!!$F3	1110
3	TraesCS3D01G485200	chr3B	779566815	779569345	2530	False	1254.50	2052	90.3360	1	2317	2	chr3B.!!$F2	2316
4	TraesCS3D01G485200	chr3B	749989122	749989891	769	True	959.00	959	89.1550	2316	3099	1	chr3B.!!$R1	783
5	TraesCS3D01G485200	chr3B	725117379	725120593	3214	True	522.56	1646	92.8824	1	2292	5	chr3B.!!$R3	2291
6	TraesCS3D01G485200	chr3B	786042832	786043756	924	True	457.00	457	76.2910	1131	2049	1	chr3B.!!$R2	918
7	TraesCS3D01G485200	chr3B	779510368	779511386	1018	False	281.50	326	80.6950	1127	2103	2	chr3B.!!$F1	976
8	TraesCS3D01G485200	chr3B	778489924	778490944	1020	True	268.50	324	80.6045	1130	2108	2	chr3B.!!$R4	978
9	TraesCS3D01G485200	chr7D	426556019	426556805	786	False	1088.00	1088	91.6880	2314	3101	1	chr7D.!!$F1	787
10	TraesCS3D01G485200	chr4A	595776376	595777164	788	False	1007.00	1007	89.7730	2314	3101	1	chr4A.!!$F1	787
11	TraesCS3D01G485200	chr4A	616716143	616716925	782	True	1000.00	1000	89.7340	2316	3101	1	chr4A.!!$R1	785
12	TraesCS3D01G485200	chr4A	625971781	625972501	720	True	749.00	749	86.0430	2316	3023	1	chr4A.!!$R2	707
13	TraesCS3D01G485200	chr3A	710343819	710344589	770	True	990.00	990	90.0520	2338	3101	1	chr3A.!!$R1	763
14	TraesCS3D01G485200	chr3A	710404676	710405446	770	True	990.00	990	90.0520	2338	3101	1	chr3A.!!$R2	763
15	TraesCS3D01G485200	chr3A	710464710	710465479	769	True	977.00	977	89.7800	2338	3100	1	chr3A.!!$R3	762
16	TraesCS3D01G485200	chr3A	657092214	657092974	760	False	874.00	874	87.3580	2316	3101	1	chr3A.!!$F1	785
17	TraesCS3D01G485200	chr3A	715738522	715739282	760	False	359.00	359	76.0050	1134	1906	1	chr3A.!!$F2	772
18	TraesCS3D01G485200	chr4D	503910099	503910787	688	False	972.00	972	92.1090	2316	3008	1	chr4D.!!$F1	692
19	TraesCS3D01G485200	chr7A	75615323	75616121	798	True	859.00	859	86.4700	2311	3101	1	chr7A.!!$R1	790
20	TraesCS3D01G485200	chr5D	269732651	269733411	760	False	826.00	826	86.4260	2314	3101	1	chr5D.!!$F1	787
21	TraesCS3D01G485200	chrUn	41505968	41506709	741	False	329.00	329	75.4840	1355	2108	1	chrUn.!!$F1	753
22	TraesCS3D01G485200	chrUn	41525573	41526256	683	False	313.00	313	75.5960	1410	2108	1	chrUn.!!$F2	698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
123	125	1.270518	CGAGGATAGATGGCCAACCTG	60.271	57.143	10.96	5.63	36.63	4.00	F
834	2044	1.410882	TGTCTTTTCTTTTTGGCGGGG	59.589	47.619	0.00	0.00	0.00	5.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1080	2357	0.250338	GGTTTGTGGACGAAGAGGCT	60.250	55.0	0.00	0.0	0.00	4.58	R
2235	3684	0.034089	ATTGCAAGGGGAGCAGGTAC	60.034	55.0	4.94	0.0	43.75	3.34	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	4.876107	CACCTCACGCTAAACTTATTCCAT	59.124	41.667	0.00	0.00	0.00	3.41
77	78	5.351948	TTTCGTATGATCCTTGGACATGA	57.648	39.130	0.00	3.41	0.00	3.07
123	125	1.270518	CGAGGATAGATGGCCAACCTG	60.271	57.143	10.96	5.63	36.63	4.00
134	136	3.034924	CCAACCTGGCAAGTTAGCA	57.965	52.632	0.31	0.00	35.83	3.49
291	294	4.555262	AGTATTGTTTGCCATTTGTTCCG	58.445	39.130	0.00	0.00	0.00	4.30
322	325	4.164843	ACCAAAGACCACAAGAAGCTTA	57.835	40.909	0.00	0.00	0.00	3.09
424	428	3.197766	TGGTGATGTCAGGGAGATGTAAC	59.802	47.826	0.00	0.00	0.00	2.50
468	472	5.122396	GTCAAAAAGTACTGGCATGTAGGAG	59.878	44.000	0.00	0.00	0.00	3.69
540	560	5.011635	ACAACCAACAACTCTTTTTCCAGTT	59.988	36.000	0.00	0.00	32.87	3.16
686	1892	5.942236	TCAATACTCTTGAAGCATTGCTCTT	59.058	36.000	12.39	0.00	38.25	2.85
785	1995	9.232473	CCTATACTACTAGATTACAGCACATGA	57.768	37.037	0.00	0.00	0.00	3.07
822	2032	9.894783	GGGTAGTTTCTTTTTAGATGTCTTTTC	57.105	33.333	0.00	0.00	0.00	2.29
830	2040	9.313118	TCTTTTTAGATGTCTTTTCTTTTTGGC	57.687	29.630	0.00	0.00	0.00	4.52
834	2044	1.410882	TGTCTTTTCTTTTTGGCGGGG	59.589	47.619	0.00	0.00	0.00	5.73
840	2089	3.847671	TTCTTTTTGGCGGGGATTTTT	57.152	38.095	0.00	0.00	0.00	1.94
938	2197	1.559682	GACCATGAACAGGCCTCCTAA	59.440	52.381	0.00	0.00	29.64	2.69
939	2198	1.561542	ACCATGAACAGGCCTCCTAAG	59.438	52.381	0.00	0.00	29.64	2.18
960	2219	2.037902	GAGCCTCTAACCCTAGCATTCC	59.962	54.545	0.00	0.00	0.00	3.01
961	2220	1.768870	GCCTCTAACCCTAGCATTCCA	59.231	52.381	0.00	0.00	0.00	3.53
963	2222	2.104963	CCTCTAACCCTAGCATTCCACC	59.895	54.545	0.00	0.00	0.00	4.61
969	2240	1.602237	CTAGCATTCCACCCACCGT	59.398	57.895	0.00	0.00	0.00	4.83
986	2257	2.922503	TCCCACTCCGCTGCAGAA	60.923	61.111	20.43	0.19	0.00	3.02
1075	2352	3.814906	CCACCACCACCACCACCA	61.815	66.667	0.00	0.00	0.00	4.17
1076	2353	2.518349	CACCACCACCACCACCAC	60.518	66.667	0.00	0.00	0.00	4.16
1077	2354	3.816090	ACCACCACCACCACCACC	61.816	66.667	0.00	0.00	0.00	4.61
1078	2355	3.498071	CCACCACCACCACCACCT	61.498	66.667	0.00	0.00	0.00	4.00
1079	2356	2.113139	CACCACCACCACCACCTC	59.887	66.667	0.00	0.00	0.00	3.85
1080	2357	2.367648	ACCACCACCACCACCTCA	60.368	61.111	0.00	0.00	0.00	3.86
1081	2358	2.431683	CCACCACCACCACCTCAG	59.568	66.667	0.00	0.00	0.00	3.35
1086	2363	2.205462	ACCACCACCTCAGCCTCT	59.795	61.111	0.00	0.00	0.00	3.69
1089	2366	1.079543	CACCACCTCAGCCTCTTCG	60.080	63.158	0.00	0.00	0.00	3.79
1102	2379	0.107831	CTCTTCGTCCACAAACCCCA	59.892	55.000	0.00	0.00	0.00	4.96
1204	2496	2.125326	CGCACCTACCGGGATCTCA	61.125	63.158	6.32	0.00	38.76	3.27
1370	2740	2.162681	CAAATTCCACTCCTTCGGCTT	58.837	47.619	0.00	0.00	0.00	4.35
1382	2752	4.084888	CGGCTTCCGCGTTTCCAC	62.085	66.667	4.92	0.00	41.17	4.02
1408	2805	4.530857	GCGCCGGCTATGACACCT	62.531	66.667	26.68	0.00	35.83	4.00
1472	2869	3.136750	CCTGCCTGATCTCCCGAG	58.863	66.667	0.00	0.00	0.00	4.63
1477	2875	1.152943	CCTGATCTCCCGAGACCGA	60.153	63.158	0.00	0.00	40.75	4.69
1515	2920	1.666872	CTTTTCCGGCGACCTCGTT	60.667	57.895	9.30	0.00	42.22	3.85
1537	2942	1.074405	TCACCTTCAGGAAATGCTGCT	59.926	47.619	0.00	0.00	38.94	4.24
1660	3071	6.425114	CCTCTATGCGCTGATTTACAATTACT	59.575	38.462	9.73	0.00	0.00	2.24
1691	3102	1.621301	CTCGCTGTCGTCAAGCTTGG	61.621	60.000	25.73	11.30	36.96	3.61
1813	3233	1.067846	TCATTGTCGAGGTGGAGTTCG	60.068	52.381	0.00	0.00	38.13	3.95
1845	3265	5.411361	TGTGTACCATGTTTTCTATCTGCAC	59.589	40.000	0.00	0.00	0.00	4.57
1852	3272	3.582647	TGTTTTCTATCTGCACTCTGGGA	59.417	43.478	0.00	0.00	0.00	4.37
2180	3629	8.816144	TCATTTAGTTTGACATTTTCTGTTTGC	58.184	29.630	0.00	0.00	38.54	3.68
2235	3684	1.683943	TCCAGAAGGACGGGTATACG	58.316	55.000	0.00	0.00	39.61	3.06
2367	3817	1.153249	CCTAAAATCGCCGCCTGGA	60.153	57.895	0.00	0.00	37.49	3.86
2642	4160	0.970937	TCATCGTCGGCCTTCTCCTT	60.971	55.000	0.00	0.00	0.00	3.36
2695	4225	4.720902	CATGGCGGACTGGTGGCA	62.721	66.667	0.00	0.00	45.22	4.92
2841	4384	0.798776	CTGACGTGTCCATTCAAGGC	59.201	55.000	0.00	0.00	0.00	4.35
2843	4386	0.321653	GACGTGTCCATTCAAGGCCT	60.322	55.000	0.00	0.00	0.00	5.19
2884	4435	2.125512	GCCGTGCTCCGTCTTCAT	60.126	61.111	0.00	0.00	33.66	2.57
3017	4628	4.143333	ATGCCGGCGCTACGAGTT	62.143	61.111	23.90	0.00	35.47	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	5.531634	GAAAAATCTTGTGCCAACAGATCA	58.468	37.500	0.00	0.00	37.67	2.92
56	57	4.442893	GGTCATGTCCAAGGATCATACGAA	60.443	45.833	3.91	0.00	0.00	3.85
57	58	3.069586	GGTCATGTCCAAGGATCATACGA	59.930	47.826	3.91	0.00	0.00	3.43
62	63	0.541392	CCGGTCATGTCCAAGGATCA	59.459	55.000	9.71	0.00	0.00	2.92
64	65	0.991920	AACCGGTCATGTCCAAGGAT	59.008	50.000	8.04	0.00	0.00	3.24
77	78	1.906574	TGCCTCTGAGATTAAACCGGT	59.093	47.619	0.00	0.00	0.00	5.28
123	125	6.368516	TGCAATAAGAATTTTGCTAACTTGCC	59.631	34.615	12.47	0.00	46.50	4.52
291	294	2.030805	GTGGTCTTTGGTTGCACATCTC	60.031	50.000	0.00	0.00	0.00	2.75
347	351	6.070596	GGTCCAAATTCATCAATTCCTTCCTT	60.071	38.462	0.00	0.00	30.37	3.36
446	450	4.396166	CCTCCTACATGCCAGTACTTTTTG	59.604	45.833	0.00	0.00	0.00	2.44
447	451	4.288626	TCCTCCTACATGCCAGTACTTTTT	59.711	41.667	0.00	0.00	0.00	1.94
512	517	5.125578	GGAAAAAGAGTTGTTGGTTGTCTCT	59.874	40.000	0.00	0.00	37.12	3.10
513	518	5.105917	TGGAAAAAGAGTTGTTGGTTGTCTC	60.106	40.000	0.00	0.00	0.00	3.36
515	520	5.066968	TGGAAAAAGAGTTGTTGGTTGTC	57.933	39.130	0.00	0.00	0.00	3.18
516	521	4.526650	ACTGGAAAAAGAGTTGTTGGTTGT	59.473	37.500	0.00	0.00	0.00	3.32
686	1892	4.890158	TGTTCATACAGGCAGAAGAAGA	57.110	40.909	0.00	0.00	0.00	2.87
763	1970	9.750125	CAATTCATGTGCTGTAATCTAGTAGTA	57.250	33.333	0.00	0.00	0.00	1.82
764	1971	7.225538	GCAATTCATGTGCTGTAATCTAGTAGT	59.774	37.037	0.00	0.00	39.00	2.73
765	1972	7.307632	GGCAATTCATGTGCTGTAATCTAGTAG	60.308	40.741	6.72	0.00	41.88	2.57
785	1995	2.039879	AGAAACTACCCTGTCGGCAATT	59.960	45.455	0.00	0.00	33.26	2.32
924	2176	3.770625	GCTCTTAGGAGGCCTGTTC	57.229	57.895	12.00	0.00	39.80	3.18
938	2197	2.785357	ATGCTAGGGTTAGAGGCTCT	57.215	50.000	22.48	22.48	0.00	4.09
939	2198	2.037902	GGAATGCTAGGGTTAGAGGCTC	59.962	54.545	6.34	6.34	0.00	4.70
960	2219	4.016706	GGAGTGGGACGGTGGGTG	62.017	72.222	0.00	0.00	0.00	4.61
969	2240	2.922503	TTCTGCAGCGGAGTGGGA	60.923	61.111	9.47	0.00	0.00	4.37
1075	2352	1.228894	TGGACGAAGAGGCTGAGGT	60.229	57.895	0.00	0.00	0.00	3.85
1076	2353	1.216710	GTGGACGAAGAGGCTGAGG	59.783	63.158	0.00	0.00	0.00	3.86
1077	2354	0.318441	TTGTGGACGAAGAGGCTGAG	59.682	55.000	0.00	0.00	0.00	3.35
1078	2355	0.756294	TTTGTGGACGAAGAGGCTGA	59.244	50.000	0.00	0.00	0.00	4.26
1079	2356	0.868406	GTTTGTGGACGAAGAGGCTG	59.132	55.000	0.00	0.00	0.00	4.85
1080	2357	0.250338	GGTTTGTGGACGAAGAGGCT	60.250	55.000	0.00	0.00	0.00	4.58
1081	2358	1.235281	GGGTTTGTGGACGAAGAGGC	61.235	60.000	0.00	0.00	0.00	4.70
1086	2363	1.152922	GGTGGGGTTTGTGGACGAA	60.153	57.895	0.00	0.00	0.00	3.85
1089	2366	1.599797	CGAGGTGGGGTTTGTGGAC	60.600	63.158	0.00	0.00	0.00	4.02
1102	2379	1.239968	AAGTAAGGCGACGACGAGGT	61.240	55.000	12.29	0.00	42.66	3.85
1151	2443	1.545706	GGCGAAGAAGTCCTGGAGGT	61.546	60.000	0.00	0.00	36.34	3.85
1284	2576	2.047560	CGGAGGGGGACGTGAAAC	60.048	66.667	0.00	0.00	0.00	2.78
1340	2638	1.605165	TGGAATTTGGTGGGGCGAC	60.605	57.895	0.00	0.00	0.00	5.19
1341	2639	1.605165	GTGGAATTTGGTGGGGCGA	60.605	57.895	0.00	0.00	0.00	5.54
1370	2740	4.323477	CCTGGGTGGAAACGCGGA	62.323	66.667	12.47	0.00	43.50	5.54
1393	2790	2.897350	GCAGGTGTCATAGCCGGC	60.897	66.667	21.89	21.89	38.63	6.13
1394	2791	2.203070	GGCAGGTGTCATAGCCGG	60.203	66.667	0.00	0.00	37.41	6.13
1396	2793	2.897350	GCGGCAGGTGTCATAGCC	60.897	66.667	0.00	0.00	43.61	3.93
1397	2794	3.264897	CGCGGCAGGTGTCATAGC	61.265	66.667	0.00	0.00	0.00	2.97
1398	2795	1.589993	CTCGCGGCAGGTGTCATAG	60.590	63.158	6.13	0.00	0.00	2.23
1399	2796	2.494445	CTCGCGGCAGGTGTCATA	59.506	61.111	6.13	0.00	0.00	2.15
1407	2804	4.271816	ATACGGAGCTCGCGGCAG	62.272	66.667	22.76	6.41	44.79	4.85
1408	2805	4.266070	GATACGGAGCTCGCGGCA	62.266	66.667	22.76	13.60	44.79	5.69
1422	2819	1.001120	TGTGAGGAGGTGGCGGATA	59.999	57.895	0.00	0.00	0.00	2.59
1466	2863	1.221293	GAGTCTCTCGGTCTCGGGA	59.779	63.158	0.00	0.00	44.58	5.14
1472	2869	3.078837	ACTTCTTCAGAGTCTCTCGGTC	58.921	50.000	0.00	0.00	35.36	4.79
1477	2875	4.015872	AGACGACTTCTTCAGAGTCTCT	57.984	45.455	0.00	0.00	38.66	3.10
1515	2920	2.507484	CAGCATTTCCTGAAGGTGACA	58.493	47.619	0.00	0.00	34.77	3.58
1537	2942	0.323087	TGGCAGTAGTAGAGGACGCA	60.323	55.000	0.00	0.00	0.00	5.24
1586	2997	1.990060	AGGTGGCCTACATCGCAGT	60.990	57.895	3.32	0.00	34.56	4.40
1660	3071	1.153647	CAGCGAGGCGGTAATGTGA	60.154	57.895	0.00	0.00	35.27	3.58
1691	3102	3.685058	GACAATACCGCAGAATTCTTGC	58.315	45.455	4.86	11.87	0.00	4.01
1845	3265	2.235898	CTCCCACTTCTTCTTCCCAGAG	59.764	54.545	0.00	0.00	0.00	3.35
1852	3272	3.268034	AGTCCTCTCCCACTTCTTCTT	57.732	47.619	0.00	0.00	0.00	2.52
2112	3561	5.335191	GGAGCAAATGTACCTTGAGAACTTG	60.335	44.000	8.56	0.00	0.00	3.16
2233	3682	2.955881	GCAAGGGGAGCAGGTACGT	61.956	63.158	0.00	0.00	0.00	3.57
2234	3683	2.125106	GCAAGGGGAGCAGGTACG	60.125	66.667	0.00	0.00	0.00	3.67
2235	3684	0.034089	ATTGCAAGGGGAGCAGGTAC	60.034	55.000	4.94	0.00	43.75	3.34
2236	3685	0.034186	CATTGCAAGGGGAGCAGGTA	60.034	55.000	4.94	0.00	43.75	3.08
2295	3744	9.890629	ATGCTCTTATAATGACAAACACTAGAA	57.109	29.630	0.00	0.00	0.00	2.10
2304	3753	5.994054	GCTGGAGATGCTCTTATAATGACAA	59.006	40.000	0.00	0.00	0.00	3.18
2340	3790	1.453197	CGATTTTAGGCGCCCCCTT	60.453	57.895	26.15	7.06	43.06	3.95
2367	3817	4.947147	TTTTGCGCCGGCTCACCT	62.947	61.111	26.68	0.00	40.82	4.00
2620	4133	1.379977	AGAAGGCCGACGATGAGGA	60.380	57.895	0.00	0.00	0.00	3.71
2621	4134	1.066587	GAGAAGGCCGACGATGAGG	59.933	63.158	0.00	0.00	0.00	3.86
2622	4135	1.066587	GGAGAAGGCCGACGATGAG	59.933	63.158	0.00	0.00	0.00	2.90
2623	4136	0.970937	AAGGAGAAGGCCGACGATGA	60.971	55.000	0.00	0.00	0.00	2.92
2624	4137	0.528684	GAAGGAGAAGGCCGACGATG	60.529	60.000	0.00	0.00	0.00	3.84
2625	4138	0.684805	AGAAGGAGAAGGCCGACGAT	60.685	55.000	0.00	0.00	0.00	3.73
2825	4368	0.606401	CAGGCCTTGAATGGACACGT	60.606	55.000	0.00	0.00	37.66	4.49
2830	4373	1.377202	GACGCAGGCCTTGAATGGA	60.377	57.895	0.00	0.00	0.00	3.41
2843	4386	4.440987	GAGCTCGACGACGACGCA	62.441	66.667	23.75	3.68	43.81	5.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.