Multiple sequence alignment - TraesCS3D01G483000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G483000 chr3D 100.000 2836 0 0 1 2836 580588674 580585839 0.000000e+00 5238
1 TraesCS3D01G483000 chr3D 83.543 717 93 13 103 812 580602804 580602106 0.000000e+00 647
2 TraesCS3D01G483000 chr3D 80.511 313 54 4 1007 1314 582826276 582825966 1.700000e-57 233
3 TraesCS3D01G483000 chr3B 91.737 1416 87 15 623 2032 776121772 776120381 0.000000e+00 1940
4 TraesCS3D01G483000 chr3B 78.599 514 93 12 1445 1955 778393057 778393556 9.800000e-85 324
5 TraesCS3D01G483000 chr3B 80.964 394 71 3 1445 1836 778404615 778405006 2.740000e-80 309
6 TraesCS3D01G483000 chr3B 80.964 394 71 3 1445 1836 778443136 778443527 2.740000e-80 309
7 TraesCS3D01G483000 chr3B 76.550 516 102 13 1445 1955 778432716 778433217 6.020000e-67 265
8 TraesCS3D01G483000 chr3B 81.308 321 51 6 1001 1315 778456139 778456456 4.690000e-63 252
9 TraesCS3D01G483000 chr3B 81.570 293 26 10 2033 2302 443766150 443765863 1.710000e-52 217
10 TraesCS3D01G483000 chr3A 87.903 1240 98 20 609 1844 716098569 716097378 0.000000e+00 1411
11 TraesCS3D01G483000 chr3A 88.190 906 69 23 557 1450 716106976 716106097 0.000000e+00 1046
12 TraesCS3D01G483000 chr3A 85.277 523 38 11 1445 1966 716105926 716105442 1.170000e-138 503
13 TraesCS3D01G483000 chr3A 87.063 286 19 7 2546 2821 716096391 716096114 9.870000e-80 307
14 TraesCS3D01G483000 chr3A 92.715 151 8 2 1884 2032 716096715 716096566 6.150000e-52 215
15 TraesCS3D01G483000 chr3A 80.471 297 39 10 531 811 716103164 716102871 2.860000e-50 209
16 TraesCS3D01G483000 chr3A 89.655 87 8 1 2317 2403 716096576 716096491 2.990000e-20 110
17 TraesCS3D01G483000 chr2A 86.831 243 31 1 2078 2319 194948070 194947828 1.290000e-68 270
18 TraesCS3D01G483000 chr1B 86.260 262 16 6 2077 2319 616318831 616319091 1.670000e-67 267
19 TraesCS3D01G483000 chr2D 83.121 314 21 10 2033 2320 35028287 35027980 1.010000e-64 257
20 TraesCS3D01G483000 chr1A 86.404 228 30 1 2071 2297 585033240 585033467 6.070000e-62 248
21 TraesCS3D01G483000 chr7D 82.432 296 35 9 2030 2319 139183298 139183014 2.820000e-60 243
22 TraesCS3D01G483000 chr7D 80.345 290 31 8 2033 2297 268589231 268589519 2.230000e-46 196
23 TraesCS3D01G483000 chr5D 84.556 259 20 8 2053 2302 442081791 442081544 3.650000e-59 239
24 TraesCS3D01G483000 chrUn 82.051 312 25 6 2033 2319 348964577 348964272 1.310000e-58 237
25 TraesCS3D01G483000 chr6D 82.986 288 20 15 2037 2297 199152704 199152989 1.700000e-57 233
26 TraesCS3D01G483000 chr5A 83.459 266 24 3 2077 2322 656213389 656213124 2.200000e-56 230
27 TraesCS3D01G483000 chr5A 81.849 292 28 6 2031 2297 447364772 447364481 3.680000e-54 222
28 TraesCS3D01G483000 chr5A 81.090 312 26 9 2033 2326 641746944 641747240 4.760000e-53 219
29 TraesCS3D01G483000 chr4A 85.165 182 21 2 2139 2319 450795138 450794962 6.240000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G483000 chr3D 580585839 580588674 2835 True 5238.00 5238 100.000 1 2836 1 chr3D.!!$R1 2835
1 TraesCS3D01G483000 chr3D 580602106 580602804 698 True 647.00 647 83.543 103 812 1 chr3D.!!$R2 709
2 TraesCS3D01G483000 chr3B 776120381 776121772 1391 True 1940.00 1940 91.737 623 2032 1 chr3B.!!$R2 1409
3 TraesCS3D01G483000 chr3B 778432716 778433217 501 False 265.00 265 76.550 1445 1955 1 chr3B.!!$F3 510
4 TraesCS3D01G483000 chr3A 716102871 716106976 4105 True 586.00 1046 84.646 531 1966 3 chr3A.!!$R2 1435
5 TraesCS3D01G483000 chr3A 716096114 716098569 2455 True 510.75 1411 89.334 609 2821 4 chr3A.!!$R1 2212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 580 0.039256 TTAACTGGGACGTCCGTTCG 60.039 55.0 27.68 17.14 38.76 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 3011 0.031994 GGCCTTTTCAGAAAAGCGCA 59.968 50.0 30.17 7.44 45.05 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.706373 TCCTGCTCCGCCTTGTCC 61.706 66.667 0.00 0.00 0.00 4.02
18 19 4.785453 CCTGCTCCGCCTTGTCCC 62.785 72.222 0.00 0.00 0.00 4.46
19 20 4.785453 CTGCTCCGCCTTGTCCCC 62.785 72.222 0.00 0.00 0.00 4.81
21 22 3.081409 GCTCCGCCTTGTCCCCTA 61.081 66.667 0.00 0.00 0.00 3.53
22 23 2.901042 CTCCGCCTTGTCCCCTAC 59.099 66.667 0.00 0.00 0.00 3.18
23 24 1.686110 CTCCGCCTTGTCCCCTACT 60.686 63.158 0.00 0.00 0.00 2.57
24 25 1.961180 CTCCGCCTTGTCCCCTACTG 61.961 65.000 0.00 0.00 0.00 2.74
25 26 2.291043 CCGCCTTGTCCCCTACTGT 61.291 63.158 0.00 0.00 0.00 3.55
26 27 1.218316 CGCCTTGTCCCCTACTGTC 59.782 63.158 0.00 0.00 0.00 3.51
27 28 1.258445 CGCCTTGTCCCCTACTGTCT 61.258 60.000 0.00 0.00 0.00 3.41
28 29 0.537653 GCCTTGTCCCCTACTGTCTC 59.462 60.000 0.00 0.00 0.00 3.36
29 30 0.818296 CCTTGTCCCCTACTGTCTCG 59.182 60.000 0.00 0.00 0.00 4.04
30 31 1.546961 CTTGTCCCCTACTGTCTCGT 58.453 55.000 0.00 0.00 0.00 4.18
31 32 1.473278 CTTGTCCCCTACTGTCTCGTC 59.527 57.143 0.00 0.00 0.00 4.20
32 33 0.697079 TGTCCCCTACTGTCTCGTCT 59.303 55.000 0.00 0.00 0.00 4.18
33 34 1.075050 TGTCCCCTACTGTCTCGTCTT 59.925 52.381 0.00 0.00 0.00 3.01
34 35 1.473278 GTCCCCTACTGTCTCGTCTTG 59.527 57.143 0.00 0.00 0.00 3.02
35 36 0.173708 CCCCTACTGTCTCGTCTTGC 59.826 60.000 0.00 0.00 0.00 4.01
36 37 1.178276 CCCTACTGTCTCGTCTTGCT 58.822 55.000 0.00 0.00 0.00 3.91
37 38 1.133407 CCCTACTGTCTCGTCTTGCTC 59.867 57.143 0.00 0.00 0.00 4.26
38 39 1.133407 CCTACTGTCTCGTCTTGCTCC 59.867 57.143 0.00 0.00 0.00 4.70
39 40 0.803117 TACTGTCTCGTCTTGCTCCG 59.197 55.000 0.00 0.00 0.00 4.63
40 41 1.153939 CTGTCTCGTCTTGCTCCGG 60.154 63.158 0.00 0.00 0.00 5.14
41 42 1.587043 CTGTCTCGTCTTGCTCCGGA 61.587 60.000 2.93 2.93 0.00 5.14
42 43 1.137825 GTCTCGTCTTGCTCCGGAG 59.862 63.158 27.83 27.83 0.00 4.63
43 44 1.303398 TCTCGTCTTGCTCCGGAGT 60.303 57.895 31.43 0.00 0.00 3.85
44 45 1.153939 CTCGTCTTGCTCCGGAGTG 60.154 63.158 31.43 21.11 0.00 3.51
45 46 1.867919 CTCGTCTTGCTCCGGAGTGT 61.868 60.000 31.43 0.00 0.00 3.55
46 47 1.444553 CGTCTTGCTCCGGAGTGTC 60.445 63.158 31.43 16.34 0.00 3.67
47 48 1.867919 CGTCTTGCTCCGGAGTGTCT 61.868 60.000 31.43 0.00 0.00 3.41
48 49 0.389166 GTCTTGCTCCGGAGTGTCTG 60.389 60.000 31.43 17.17 0.00 3.51
49 50 1.079543 CTTGCTCCGGAGTGTCTGG 60.080 63.158 31.43 12.79 44.41 3.86
53 54 2.680352 TCCGGAGTGTCTGGAGGC 60.680 66.667 0.00 0.00 46.55 4.70
54 55 2.997315 CCGGAGTGTCTGGAGGCA 60.997 66.667 0.00 0.00 45.95 4.75
55 56 2.583441 CCGGAGTGTCTGGAGGCAA 61.583 63.158 0.00 0.00 45.95 4.52
56 57 1.079543 CGGAGTGTCTGGAGGCAAG 60.080 63.158 0.00 0.00 0.00 4.01
57 58 1.376553 GGAGTGTCTGGAGGCAAGC 60.377 63.158 0.00 0.00 0.00 4.01
58 59 1.376553 GAGTGTCTGGAGGCAAGCC 60.377 63.158 2.02 2.02 0.00 4.35
59 60 2.743928 GTGTCTGGAGGCAAGCCG 60.744 66.667 5.28 0.00 41.95 5.52
60 61 4.704833 TGTCTGGAGGCAAGCCGC 62.705 66.667 6.25 6.25 41.95 6.53
61 62 4.400961 GTCTGGAGGCAAGCCGCT 62.401 66.667 14.38 0.00 41.91 5.52
62 63 4.399395 TCTGGAGGCAAGCCGCTG 62.399 66.667 14.38 8.12 41.91 5.18
93 94 4.498520 CACGCCGTGCCTCGATCT 62.499 66.667 3.47 0.00 42.86 2.75
94 95 4.194720 ACGCCGTGCCTCGATCTC 62.195 66.667 0.00 0.00 42.86 2.75
95 96 4.933064 CGCCGTGCCTCGATCTCC 62.933 72.222 0.02 0.00 42.86 3.71
96 97 3.838271 GCCGTGCCTCGATCTCCA 61.838 66.667 0.02 0.00 42.86 3.86
97 98 2.105128 CCGTGCCTCGATCTCCAC 59.895 66.667 0.02 0.00 42.86 4.02
98 99 2.418910 CCGTGCCTCGATCTCCACT 61.419 63.158 0.02 0.00 42.86 4.00
99 100 1.101635 CCGTGCCTCGATCTCCACTA 61.102 60.000 0.02 0.00 42.86 2.74
100 101 0.309302 CGTGCCTCGATCTCCACTAG 59.691 60.000 0.00 0.00 42.86 2.57
101 102 0.671251 GTGCCTCGATCTCCACTAGG 59.329 60.000 0.00 0.00 0.00 3.02
102 103 0.551396 TGCCTCGATCTCCACTAGGA 59.449 55.000 0.00 0.00 43.21 2.94
103 104 1.145945 TGCCTCGATCTCCACTAGGAT 59.854 52.381 0.00 0.00 44.70 3.24
104 105 1.816224 GCCTCGATCTCCACTAGGATC 59.184 57.143 0.00 0.00 44.70 3.36
105 106 2.554344 GCCTCGATCTCCACTAGGATCT 60.554 54.545 0.00 0.00 44.70 2.75
106 107 3.343617 CCTCGATCTCCACTAGGATCTC 58.656 54.545 0.00 0.00 44.70 2.75
107 108 3.009033 CCTCGATCTCCACTAGGATCTCT 59.991 52.174 0.00 0.00 44.70 3.10
108 109 4.002982 CTCGATCTCCACTAGGATCTCTG 58.997 52.174 0.00 0.00 44.70 3.35
115 116 0.820074 ACTAGGATCTCTGACCGGCG 60.820 60.000 0.00 0.00 0.00 6.46
131 132 2.816958 CGCTGCGGAGTGAGCATT 60.817 61.111 12.68 0.00 44.26 3.56
139 140 1.398390 CGGAGTGAGCATTTTGTAGGC 59.602 52.381 0.00 0.00 0.00 3.93
140 141 2.716217 GGAGTGAGCATTTTGTAGGCT 58.284 47.619 0.00 0.00 41.35 4.58
168 169 4.740822 GGCGGACCATGGTTGCCT 62.741 66.667 36.59 12.47 42.67 4.75
170 171 2.034066 CGGACCATGGTTGCCTGT 59.966 61.111 20.85 0.00 0.00 4.00
184 185 1.069668 TGCCTGTGGATGATGATCTCG 59.930 52.381 0.00 0.00 0.00 4.04
189 190 0.600057 TGGATGATGATCTCGGAGCG 59.400 55.000 0.00 0.00 0.00 5.03
192 193 0.600557 ATGATGATCTCGGAGCGGAC 59.399 55.000 0.00 0.00 0.00 4.79
215 217 3.266513 TGAATGGATTGGAGTGATGGTGA 59.733 43.478 0.00 0.00 0.00 4.02
216 218 3.572632 ATGGATTGGAGTGATGGTGAG 57.427 47.619 0.00 0.00 0.00 3.51
217 219 2.269023 TGGATTGGAGTGATGGTGAGT 58.731 47.619 0.00 0.00 0.00 3.41
218 220 2.644299 TGGATTGGAGTGATGGTGAGTT 59.356 45.455 0.00 0.00 0.00 3.01
219 221 3.274288 GGATTGGAGTGATGGTGAGTTC 58.726 50.000 0.00 0.00 0.00 3.01
220 222 2.455674 TTGGAGTGATGGTGAGTTCG 57.544 50.000 0.00 0.00 0.00 3.95
257 259 3.001406 CGGACGGGAGGGAAAGGT 61.001 66.667 0.00 0.00 0.00 3.50
260 262 1.002502 GACGGGAGGGAAAGGTTGG 60.003 63.158 0.00 0.00 0.00 3.77
272 274 5.016245 AGGGAAAGGTTGGAAATAGGATGAA 59.984 40.000 0.00 0.00 0.00 2.57
282 284 7.406620 TGGAAATAGGATGAATAGGGTTGAT 57.593 36.000 0.00 0.00 0.00 2.57
286 288 4.803329 AGGATGAATAGGGTTGATGCTT 57.197 40.909 0.00 0.00 0.00 3.91
290 292 5.127682 GGATGAATAGGGTTGATGCTTGTTT 59.872 40.000 0.00 0.00 0.00 2.83
292 294 6.418057 TGAATAGGGTTGATGCTTGTTTTT 57.582 33.333 0.00 0.00 0.00 1.94
293 295 6.454795 TGAATAGGGTTGATGCTTGTTTTTC 58.545 36.000 0.00 0.00 0.00 2.29
299 301 4.295051 GTTGATGCTTGTTTTTCGGCTTA 58.705 39.130 0.00 0.00 0.00 3.09
307 309 5.633601 GCTTGTTTTTCGGCTTAAAATAGCT 59.366 36.000 15.43 0.00 40.99 3.32
308 310 6.804783 GCTTGTTTTTCGGCTTAAAATAGCTA 59.195 34.615 0.00 0.00 40.99 3.32
316 318 5.238650 TCGGCTTAAAATAGCTAGATTTGGC 59.761 40.000 14.43 15.78 40.99 4.52
377 379 0.301687 CGCCGGATCGATGAGTTTTG 59.698 55.000 5.05 0.00 0.00 2.44
380 382 1.368641 CGGATCGATGAGTTTTGGCA 58.631 50.000 0.54 0.00 0.00 4.92
390 392 1.106351 AGTTTTGGCATGTGTCCGCA 61.106 50.000 0.00 0.00 0.00 5.69
397 399 2.125147 ATGTGTCCGCATGGGTCG 60.125 61.111 9.14 0.00 37.00 4.79
399 401 2.813908 GTGTCCGCATGGGTCGTC 60.814 66.667 9.14 0.00 37.00 4.20
400 402 4.077184 TGTCCGCATGGGTCGTCC 62.077 66.667 9.14 0.00 37.00 4.79
421 427 2.606213 TCTGATGTGGCGGACCCA 60.606 61.111 0.00 0.00 42.79 4.51
453 459 0.962489 CGGACCTTCTCATATCCGCT 59.038 55.000 0.00 0.00 46.75 5.52
457 463 3.181465 GGACCTTCTCATATCCGCTTCAA 60.181 47.826 0.00 0.00 0.00 2.69
470 476 6.949352 ATCCGCTTCAAATATGAACTGAAT 57.051 33.333 0.00 0.00 40.59 2.57
473 479 9.725019 ATCCGCTTCAAATATGAACTGAATATA 57.275 29.630 0.00 0.00 40.59 0.86
474 480 9.725019 TCCGCTTCAAATATGAACTGAATATAT 57.275 29.630 0.00 0.00 40.59 0.86
476 482 9.270576 CGCTTCAAATATGAACTGAATATATGC 57.729 33.333 0.00 0.00 40.59 3.14
481 487 9.218359 CAAATATGAACTGAATATATGCGATGC 57.782 33.333 0.00 0.00 0.00 3.91
482 488 5.808042 ATGAACTGAATATATGCGATGCC 57.192 39.130 0.00 0.00 0.00 4.40
484 490 3.592898 ACTGAATATATGCGATGCCGA 57.407 42.857 0.00 0.00 38.22 5.54
485 491 4.128925 ACTGAATATATGCGATGCCGAT 57.871 40.909 0.00 0.00 38.22 4.18
486 492 3.867493 ACTGAATATATGCGATGCCGATG 59.133 43.478 0.00 0.00 38.22 3.84
487 493 4.114794 CTGAATATATGCGATGCCGATGA 58.885 43.478 0.00 0.00 38.22 2.92
488 494 4.114794 TGAATATATGCGATGCCGATGAG 58.885 43.478 0.00 0.00 38.22 2.90
489 495 1.926561 TATATGCGATGCCGATGAGC 58.073 50.000 0.00 0.00 38.22 4.26
492 498 4.916293 GCGATGCCGATGAGCCCA 62.916 66.667 0.00 0.00 38.22 5.36
495 501 1.168407 CGATGCCGATGAGCCCAAAT 61.168 55.000 0.00 0.00 38.22 2.32
503 509 3.254060 CGATGAGCCCAAATCGTATAGG 58.746 50.000 0.00 0.00 40.55 2.57
505 511 4.382040 CGATGAGCCCAAATCGTATAGGAT 60.382 45.833 2.02 2.02 40.55 3.24
506 512 4.537135 TGAGCCCAAATCGTATAGGATC 57.463 45.455 8.32 0.00 33.62 3.36
507 513 3.901222 TGAGCCCAAATCGTATAGGATCA 59.099 43.478 8.32 0.00 40.51 2.92
508 514 4.346709 TGAGCCCAAATCGTATAGGATCAA 59.653 41.667 8.32 0.00 39.88 2.57
524 530 3.369471 GGATCAATTTGAGGAGTCGGACA 60.369 47.826 11.27 0.00 0.00 4.02
525 531 3.040147 TCAATTTGAGGAGTCGGACAC 57.960 47.619 11.27 3.74 0.00 3.67
526 532 2.632996 TCAATTTGAGGAGTCGGACACT 59.367 45.455 11.27 7.96 38.45 3.55
535 541 3.149899 GTCGGACACTCGGACTAGA 57.850 57.895 2.62 0.00 41.65 2.43
536 542 1.666054 GTCGGACACTCGGACTAGAT 58.334 55.000 2.62 0.00 41.65 1.98
537 543 1.598601 GTCGGACACTCGGACTAGATC 59.401 57.143 2.62 0.00 41.65 2.75
538 544 1.208776 TCGGACACTCGGACTAGATCA 59.791 52.381 0.00 0.00 0.00 2.92
540 546 2.031595 CGGACACTCGGACTAGATCATG 60.032 54.545 0.00 0.00 0.00 3.07
541 547 3.215151 GGACACTCGGACTAGATCATGA 58.785 50.000 0.00 0.00 0.00 3.07
543 549 4.279671 GGACACTCGGACTAGATCATGATT 59.720 45.833 10.14 2.85 0.00 2.57
544 550 5.221342 GGACACTCGGACTAGATCATGATTT 60.221 44.000 10.14 6.83 0.00 2.17
546 552 6.045318 ACACTCGGACTAGATCATGATTTTG 58.955 40.000 10.14 7.87 0.00 2.44
547 553 6.045318 CACTCGGACTAGATCATGATTTTGT 58.955 40.000 10.14 11.24 0.00 2.83
548 554 6.536582 CACTCGGACTAGATCATGATTTTGTT 59.463 38.462 10.14 0.00 0.00 2.83
549 555 6.758886 ACTCGGACTAGATCATGATTTTGTTC 59.241 38.462 10.14 9.15 0.00 3.18
550 556 5.748630 TCGGACTAGATCATGATTTTGTTCG 59.251 40.000 25.42 25.42 33.38 3.95
551 557 5.050769 CGGACTAGATCATGATTTTGTTCGG 60.051 44.000 24.36 12.15 30.32 4.30
552 558 5.817816 GGACTAGATCATGATTTTGTTCGGT 59.182 40.000 10.14 1.94 0.00 4.69
555 561 8.964476 ACTAGATCATGATTTTGTTCGGTTAT 57.036 30.769 10.14 0.00 0.00 1.89
556 562 9.396022 ACTAGATCATGATTTTGTTCGGTTATT 57.604 29.630 10.14 0.00 0.00 1.40
561 567 9.787532 ATCATGATTTTGTTCGGTTATTAACTG 57.212 29.630 1.18 8.81 39.17 3.16
562 568 8.240682 TCATGATTTTGTTCGGTTATTAACTGG 58.759 33.333 14.02 4.26 38.33 4.00
564 570 6.715718 TGATTTTGTTCGGTTATTAACTGGGA 59.284 34.615 14.02 4.15 38.33 4.37
566 572 3.587923 TGTTCGGTTATTAACTGGGACG 58.412 45.455 14.02 5.86 38.33 4.79
567 573 3.006752 TGTTCGGTTATTAACTGGGACGT 59.993 43.478 14.02 0.00 38.33 4.34
568 574 3.508744 TCGGTTATTAACTGGGACGTC 57.491 47.619 7.13 7.13 38.33 4.34
569 575 2.166254 TCGGTTATTAACTGGGACGTCC 59.834 50.000 27.04 27.04 38.33 4.79
570 576 2.543641 GGTTATTAACTGGGACGTCCG 58.456 52.381 27.68 17.53 38.76 4.79
571 577 2.094026 GGTTATTAACTGGGACGTCCGT 60.094 50.000 27.68 18.21 38.76 4.69
572 578 3.588955 GTTATTAACTGGGACGTCCGTT 58.411 45.455 27.68 26.10 38.76 4.44
573 579 2.375173 ATTAACTGGGACGTCCGTTC 57.625 50.000 27.68 15.00 38.76 3.95
574 580 0.039256 TTAACTGGGACGTCCGTTCG 60.039 55.000 27.68 17.14 38.76 3.95
575 581 1.865788 TAACTGGGACGTCCGTTCGG 61.866 60.000 27.68 20.45 38.76 4.30
576 582 3.367743 CTGGGACGTCCGTTCGGA 61.368 66.667 27.68 10.00 38.76 4.55
577 583 2.677524 TGGGACGTCCGTTCGGAT 60.678 61.111 27.68 2.07 38.76 4.18
584 590 0.806102 CGTCCGTTCGGATGAGCATT 60.806 55.000 23.81 0.00 42.34 3.56
617 623 0.460811 TCTAAGGATGCAGCGCACTG 60.461 55.000 11.47 0.00 43.04 3.66
660 669 2.509336 CGTCTGCGGCCGAGAAAT 60.509 61.111 33.48 0.00 0.00 2.17
712 721 1.910819 CGAATTCGAAATTTGGCCGTG 59.089 47.619 23.29 0.00 43.02 4.94
756 765 5.789643 TCATCACCATCGTCTCATATTCA 57.210 39.130 0.00 0.00 0.00 2.57
787 796 4.159321 TCTTGACCAAAATGCTTTCACACA 59.841 37.500 0.00 0.00 0.00 3.72
799 808 3.188048 GCTTTCACACAGTGAGAGATTGG 59.812 47.826 18.39 0.00 44.27 3.16
800 809 4.635223 CTTTCACACAGTGAGAGATTGGA 58.365 43.478 7.81 0.00 44.27 3.53
850 859 2.341760 GCGACGTGTGCTAGAAAACTAG 59.658 50.000 0.00 0.00 0.00 2.57
897 907 7.609532 CAGTCTTCTTCTATCCCAAAAGACAAT 59.390 37.037 13.62 0.00 43.06 2.71
898 908 8.166726 AGTCTTCTTCTATCCCAAAAGACAATT 58.833 33.333 13.62 0.00 43.06 2.32
1110 1128 0.534412 AGCTCATCACGGAAGACCTG 59.466 55.000 0.00 0.00 0.00 4.00
1112 1130 1.338200 GCTCATCACGGAAGACCTGTT 60.338 52.381 0.00 0.00 0.00 3.16
1152 1170 4.715523 CGCCACAACCCCGTCCAT 62.716 66.667 0.00 0.00 0.00 3.41
1336 1358 6.381801 GTTACCATGCATGCCTGAATATTAC 58.618 40.000 22.75 8.33 0.00 1.89
1337 1359 4.733165 ACCATGCATGCCTGAATATTACT 58.267 39.130 22.75 0.00 0.00 2.24
1338 1360 4.763793 ACCATGCATGCCTGAATATTACTC 59.236 41.667 22.75 0.00 0.00 2.59
1339 1361 4.157289 CCATGCATGCCTGAATATTACTCC 59.843 45.833 22.75 0.00 0.00 3.85
1340 1362 4.712051 TGCATGCCTGAATATTACTCCT 57.288 40.909 16.68 0.00 0.00 3.69
1341 1363 5.823861 TGCATGCCTGAATATTACTCCTA 57.176 39.130 16.68 0.00 0.00 2.94
1382 1404 4.854399 TGTTGTCGCAAAAAGTAGGATTG 58.146 39.130 0.00 0.00 0.00 2.67
1385 1407 2.227865 GTCGCAAAAAGTAGGATTGGCA 59.772 45.455 0.00 0.00 0.00 4.92
1405 1427 7.804614 TGGCAAACAATTTCGAAATACATAC 57.195 32.000 22.99 11.39 0.00 2.39
1406 1428 7.598278 TGGCAAACAATTTCGAAATACATACT 58.402 30.769 22.99 4.28 0.00 2.12
1407 1429 7.753132 TGGCAAACAATTTCGAAATACATACTC 59.247 33.333 22.99 11.78 0.00 2.59
1408 1430 7.753132 GGCAAACAATTTCGAAATACATACTCA 59.247 33.333 22.99 0.00 0.00 3.41
1441 1467 1.119635 CGTGTGCGTGAATTGTTTGG 58.880 50.000 0.00 0.00 0.00 3.28
1541 1746 1.683385 CATCTGGCGATAGTGGAGACA 59.317 52.381 0.00 0.00 39.35 3.41
1573 1778 1.135333 GAAGAGATTCTTCGGAGGCGT 59.865 52.381 3.33 0.00 42.78 5.68
1625 1830 3.958860 GTGCTGTCCCACTGGGCT 61.959 66.667 9.60 0.00 43.94 5.19
1685 1890 3.366476 GCGATGACGAGTATCCTGCTATT 60.366 47.826 0.00 0.00 42.66 1.73
1687 1892 3.898517 TGACGAGTATCCTGCTATTCG 57.101 47.619 0.00 0.00 37.02 3.34
1770 1975 0.179018 GCTTGTGTCCCACTTCACCT 60.179 55.000 0.00 0.00 35.11 4.00
1844 2049 1.940613 GCCACCAAATAGACCTAAGCG 59.059 52.381 0.00 0.00 0.00 4.68
1845 2050 2.561569 CCACCAAATAGACCTAAGCGG 58.438 52.381 0.00 0.00 39.35 5.52
1850 2055 4.058817 CCAAATAGACCTAAGCGGCTAAG 58.941 47.826 1.35 0.00 35.61 2.18
1858 2063 2.750350 AGCGGCTAAGCTTGTGGT 59.250 55.556 9.86 0.00 46.80 4.16
1860 2065 0.323629 AGCGGCTAAGCTTGTGGTTA 59.676 50.000 9.86 0.00 46.80 2.85
1861 2066 1.676014 AGCGGCTAAGCTTGTGGTTAG 60.676 52.381 9.86 9.73 46.80 2.34
1869 2074 2.154462 AGCTTGTGGTTAGTGTGATGC 58.846 47.619 0.00 0.00 0.00 3.91
1870 2075 1.200020 GCTTGTGGTTAGTGTGATGCC 59.800 52.381 0.00 0.00 0.00 4.40
1887 2733 2.235016 TGCCTGTGGGTTGAATTACAC 58.765 47.619 0.00 0.00 34.45 2.90
1924 2770 5.450818 AAATAAGACATAGGGGCAGTTGA 57.549 39.130 0.00 0.00 0.00 3.18
1941 2787 6.389091 GCAGTTGATGGAATGTTATTGTTCA 58.611 36.000 0.00 0.00 0.00 3.18
2030 2878 8.458573 AGTACATGTTTGGTTGATAACTGAAA 57.541 30.769 2.30 0.00 0.00 2.69
2031 2879 8.349983 AGTACATGTTTGGTTGATAACTGAAAC 58.650 33.333 2.30 0.00 35.81 2.78
2032 2880 7.346751 ACATGTTTGGTTGATAACTGAAACT 57.653 32.000 0.00 5.02 36.03 2.66
2033 2881 8.458573 ACATGTTTGGTTGATAACTGAAACTA 57.541 30.769 0.00 7.33 36.03 2.24
2034 2882 8.567948 ACATGTTTGGTTGATAACTGAAACTAG 58.432 33.333 0.00 0.00 36.03 2.57
2035 2883 8.567948 CATGTTTGGTTGATAACTGAAACTAGT 58.432 33.333 14.72 0.00 36.03 2.57
2036 2884 8.149973 TGTTTGGTTGATAACTGAAACTAGTC 57.850 34.615 0.00 0.00 36.03 2.59
2037 2885 7.227910 TGTTTGGTTGATAACTGAAACTAGTCC 59.772 37.037 0.00 0.00 36.03 3.85
2038 2886 6.681729 TGGTTGATAACTGAAACTAGTCCT 57.318 37.500 0.00 0.00 0.00 3.85
2039 2887 6.464222 TGGTTGATAACTGAAACTAGTCCTG 58.536 40.000 0.00 0.00 0.00 3.86
2040 2888 5.875359 GGTTGATAACTGAAACTAGTCCTGG 59.125 44.000 0.00 0.00 0.00 4.45
2041 2889 5.086104 TGATAACTGAAACTAGTCCTGGC 57.914 43.478 0.00 0.00 0.00 4.85
2042 2890 2.861147 AACTGAAACTAGTCCTGGCC 57.139 50.000 0.00 0.00 0.00 5.36
2043 2891 1.729586 ACTGAAACTAGTCCTGGCCA 58.270 50.000 4.71 4.71 0.00 5.36
2044 2892 2.269940 ACTGAAACTAGTCCTGGCCAT 58.730 47.619 5.51 0.00 0.00 4.40
2045 2893 2.026822 ACTGAAACTAGTCCTGGCCATG 60.027 50.000 5.51 2.84 0.00 3.66
2046 2894 1.281867 TGAAACTAGTCCTGGCCATGG 59.718 52.381 5.51 7.63 0.00 3.66
2047 2895 0.625849 AAACTAGTCCTGGCCATGGG 59.374 55.000 15.13 4.96 0.00 4.00
2048 2896 0.253160 AACTAGTCCTGGCCATGGGA 60.253 55.000 15.13 8.01 0.00 4.37
2049 2897 0.253160 ACTAGTCCTGGCCATGGGAA 60.253 55.000 15.05 0.57 33.01 3.97
2050 2898 0.471617 CTAGTCCTGGCCATGGGAAG 59.528 60.000 15.05 6.80 33.01 3.46
2051 2899 1.635817 TAGTCCTGGCCATGGGAAGC 61.636 60.000 15.05 4.61 33.01 3.86
2076 2924 2.962569 GGCCCGAAAAAGCCTGAC 59.037 61.111 0.00 0.00 46.14 3.51
2077 2925 2.636412 GGCCCGAAAAAGCCTGACC 61.636 63.158 0.00 0.00 46.14 4.02
2078 2926 2.636412 GCCCGAAAAAGCCTGACCC 61.636 63.158 0.00 0.00 0.00 4.46
2079 2927 2.332654 CCCGAAAAAGCCTGACCCG 61.333 63.158 0.00 0.00 0.00 5.28
2080 2928 2.332654 CCGAAAAAGCCTGACCCGG 61.333 63.158 0.00 0.00 0.00 5.73
2121 2969 3.780624 GCTCGGGCCTAGATTTTGA 57.219 52.632 9.63 0.00 0.00 2.69
2122 2970 2.262423 GCTCGGGCCTAGATTTTGAT 57.738 50.000 9.63 0.00 0.00 2.57
2123 2971 2.147150 GCTCGGGCCTAGATTTTGATC 58.853 52.381 9.63 0.00 0.00 2.92
2124 2972 2.772287 CTCGGGCCTAGATTTTGATCC 58.228 52.381 0.84 0.00 0.00 3.36
2125 2973 2.370189 CTCGGGCCTAGATTTTGATCCT 59.630 50.000 0.84 0.00 0.00 3.24
2126 2974 2.104792 TCGGGCCTAGATTTTGATCCTG 59.895 50.000 0.84 0.00 0.00 3.86
2127 2975 2.104792 CGGGCCTAGATTTTGATCCTGA 59.895 50.000 0.84 0.00 0.00 3.86
2128 2976 3.244700 CGGGCCTAGATTTTGATCCTGAT 60.245 47.826 0.84 0.00 0.00 2.90
2129 2977 4.077822 GGGCCTAGATTTTGATCCTGATG 58.922 47.826 0.84 0.00 0.00 3.07
2130 2978 4.077822 GGCCTAGATTTTGATCCTGATGG 58.922 47.826 0.00 0.00 0.00 3.51
2131 2979 3.505293 GCCTAGATTTTGATCCTGATGGC 59.495 47.826 0.00 0.00 0.00 4.40
2132 2980 4.077822 CCTAGATTTTGATCCTGATGGCC 58.922 47.826 0.00 0.00 0.00 5.36
2133 2981 2.579873 AGATTTTGATCCTGATGGCCG 58.420 47.619 0.00 0.00 0.00 6.13
2134 2982 2.173356 AGATTTTGATCCTGATGGCCGA 59.827 45.455 0.00 0.00 0.00 5.54
2135 2983 2.042686 TTTTGATCCTGATGGCCGAG 57.957 50.000 0.00 0.00 0.00 4.63
2136 2984 0.464373 TTTGATCCTGATGGCCGAGC 60.464 55.000 0.00 0.00 0.00 5.03
2163 3011 2.678580 CCCGGGCCCATCGTTTTT 60.679 61.111 24.92 0.00 0.00 1.94
2164 3012 2.571231 CCGGGCCCATCGTTTTTG 59.429 61.111 24.92 0.78 0.00 2.44
2165 3013 2.126110 CGGGCCCATCGTTTTTGC 60.126 61.111 24.92 0.00 0.00 3.68
2166 3014 2.126110 GGGCCCATCGTTTTTGCG 60.126 61.111 19.95 0.00 0.00 4.85
2167 3015 2.809174 GGCCCATCGTTTTTGCGC 60.809 61.111 0.00 0.00 0.00 6.09
2168 3016 2.258286 GCCCATCGTTTTTGCGCT 59.742 55.556 9.73 0.00 0.00 5.92
2169 3017 1.372872 GCCCATCGTTTTTGCGCTT 60.373 52.632 9.73 0.00 0.00 4.68
2170 3018 0.943835 GCCCATCGTTTTTGCGCTTT 60.944 50.000 9.73 0.00 0.00 3.51
2171 3019 1.496934 CCCATCGTTTTTGCGCTTTT 58.503 45.000 9.73 0.00 0.00 2.27
2172 3020 1.455408 CCCATCGTTTTTGCGCTTTTC 59.545 47.619 9.73 0.00 0.00 2.29
2173 3021 2.393764 CCATCGTTTTTGCGCTTTTCT 58.606 42.857 9.73 0.00 0.00 2.52
2174 3022 2.153627 CCATCGTTTTTGCGCTTTTCTG 59.846 45.455 9.73 0.00 0.00 3.02
2175 3023 2.834574 TCGTTTTTGCGCTTTTCTGA 57.165 40.000 9.73 0.00 0.00 3.27
2176 3024 3.138205 TCGTTTTTGCGCTTTTCTGAA 57.862 38.095 9.73 0.00 0.00 3.02
2177 3025 3.502920 TCGTTTTTGCGCTTTTCTGAAA 58.497 36.364 9.73 0.00 0.00 2.69
2178 3026 3.921021 TCGTTTTTGCGCTTTTCTGAAAA 59.079 34.783 9.73 14.31 0.00 2.29
2180 3028 4.577639 GTTTTTGCGCTTTTCTGAAAAGG 58.422 39.130 32.45 25.21 46.17 3.11
2181 3029 1.851658 TTGCGCTTTTCTGAAAAGGC 58.148 45.000 32.45 30.69 46.17 4.35
2182 3030 0.031994 TGCGCTTTTCTGAAAAGGCC 59.968 50.000 32.45 20.95 46.17 5.19
2183 3031 0.667487 GCGCTTTTCTGAAAAGGCCC 60.667 55.000 32.45 20.41 46.17 5.80
2184 3032 0.387239 CGCTTTTCTGAAAAGGCCCG 60.387 55.000 32.45 25.66 46.17 6.13
2185 3033 0.038251 GCTTTTCTGAAAAGGCCCGG 60.038 55.000 32.45 15.74 46.17 5.73
2186 3034 0.038251 CTTTTCTGAAAAGGCCCGGC 60.038 55.000 27.36 0.00 43.19 6.13
2187 3035 0.757188 TTTTCTGAAAAGGCCCGGCA 60.757 50.000 12.58 0.00 0.00 5.69
2188 3036 1.178534 TTTCTGAAAAGGCCCGGCAG 61.179 55.000 12.58 2.26 0.00 4.85
2189 3037 3.064324 CTGAAAAGGCCCGGCAGG 61.064 66.667 12.58 0.00 39.47 4.85
2198 3046 3.810896 CCCGGCAGGCTTTTACGC 61.811 66.667 0.00 0.00 35.76 4.42
2199 3047 4.160635 CCGGCAGGCTTTTACGCG 62.161 66.667 3.53 3.53 0.00 6.01
2200 3048 3.419759 CGGCAGGCTTTTACGCGT 61.420 61.111 19.17 19.17 0.00 6.01
2201 3049 2.951458 GGCAGGCTTTTACGCGTT 59.049 55.556 20.78 0.80 0.00 4.84
2202 3050 1.154282 GGCAGGCTTTTACGCGTTC 60.154 57.895 20.78 1.56 0.00 3.95
2203 3051 1.509162 GCAGGCTTTTACGCGTTCG 60.509 57.895 20.78 4.61 42.43 3.95
2204 3052 1.131826 CAGGCTTTTACGCGTTCGG 59.868 57.895 20.78 6.96 40.69 4.30
2205 3053 2.202260 GGCTTTTACGCGTTCGGC 60.202 61.111 20.78 16.69 40.69 5.54
2206 3054 2.202260 GCTTTTACGCGTTCGGCC 60.202 61.111 20.78 0.00 40.69 6.13
2207 3055 2.095096 CTTTTACGCGTTCGGCCG 59.905 61.111 22.12 22.12 40.69 6.13
2208 3056 2.355599 TTTTACGCGTTCGGCCGA 60.356 55.556 27.28 27.28 40.69 5.54
2209 3057 2.274834 CTTTTACGCGTTCGGCCGAG 62.275 60.000 29.20 19.13 40.69 4.63
2222 3070 2.600173 CCGAGCTTGGGCCCAAAA 60.600 61.111 36.16 17.69 39.73 2.44
2223 3071 2.206536 CCGAGCTTGGGCCCAAAAA 61.207 57.895 36.16 16.88 39.73 1.94
2224 3072 1.006220 CGAGCTTGGGCCCAAAAAC 60.006 57.895 36.16 27.04 39.73 2.43
2225 3073 1.463553 CGAGCTTGGGCCCAAAAACT 61.464 55.000 36.16 30.79 39.73 2.66
2226 3074 1.627864 GAGCTTGGGCCCAAAAACTA 58.372 50.000 36.16 15.25 39.73 2.24
2227 3075 1.546029 GAGCTTGGGCCCAAAAACTAG 59.454 52.381 36.16 24.77 39.73 2.57
2228 3076 0.608130 GCTTGGGCCCAAAAACTAGG 59.392 55.000 36.16 23.64 35.33 3.02
2229 3077 0.608130 CTTGGGCCCAAAAACTAGGC 59.392 55.000 36.16 0.00 46.37 3.93
2232 3080 3.284336 GCCCAAAAACTAGGCCCG 58.716 61.111 0.00 0.00 41.00 6.13
2233 3081 1.303806 GCCCAAAAACTAGGCCCGA 60.304 57.895 0.00 0.00 41.00 5.14
2234 3082 0.683179 GCCCAAAAACTAGGCCCGAT 60.683 55.000 0.00 0.00 41.00 4.18
2235 3083 1.409101 GCCCAAAAACTAGGCCCGATA 60.409 52.381 0.00 0.00 41.00 2.92
2236 3084 2.572290 CCCAAAAACTAGGCCCGATAG 58.428 52.381 0.00 0.00 0.00 2.08
2237 3085 1.947456 CCAAAAACTAGGCCCGATAGC 59.053 52.381 0.00 0.00 0.00 2.97
2268 3116 2.036731 GCCCGGGCCTAGGTTTTT 59.963 61.111 36.64 0.00 34.56 1.94
2315 3163 3.966543 CCCGAGGTTTGGCCAGGT 61.967 66.667 5.11 0.00 40.61 4.00
2316 3164 2.598787 CCCGAGGTTTGGCCAGGTA 61.599 63.158 5.11 0.00 40.61 3.08
2317 3165 1.607612 CCGAGGTTTGGCCAGGTAT 59.392 57.895 5.11 0.00 40.61 2.73
2318 3166 0.834612 CCGAGGTTTGGCCAGGTATA 59.165 55.000 5.11 0.00 40.61 1.47
2319 3167 1.210967 CCGAGGTTTGGCCAGGTATAA 59.789 52.381 5.11 0.00 40.61 0.98
2320 3168 2.285977 CGAGGTTTGGCCAGGTATAAC 58.714 52.381 5.11 7.17 40.61 1.89
2321 3169 2.093128 CGAGGTTTGGCCAGGTATAACT 60.093 50.000 15.13 4.53 40.61 2.24
2322 3170 3.279434 GAGGTTTGGCCAGGTATAACTG 58.721 50.000 11.08 11.08 40.61 3.16
2323 3171 2.916934 AGGTTTGGCCAGGTATAACTGA 59.083 45.455 19.72 0.00 40.97 3.41
2324 3172 3.332485 AGGTTTGGCCAGGTATAACTGAA 59.668 43.478 19.72 2.77 40.97 3.02
2377 3225 3.058293 CACTTGTTTCTATGCTTGCCGAA 60.058 43.478 0.00 0.00 0.00 4.30
2379 3227 4.218417 ACTTGTTTCTATGCTTGCCGAAAT 59.782 37.500 0.00 0.00 0.00 2.17
2383 3231 5.988561 TGTTTCTATGCTTGCCGAAATTTTT 59.011 32.000 0.00 0.00 0.00 1.94
2384 3232 6.073873 TGTTTCTATGCTTGCCGAAATTTTTG 60.074 34.615 0.00 0.00 0.00 2.44
2385 3233 4.493547 TCTATGCTTGCCGAAATTTTTGG 58.506 39.130 10.64 10.64 0.00 3.28
2386 3234 2.898729 TGCTTGCCGAAATTTTTGGA 57.101 40.000 18.05 2.31 0.00 3.53
2388 3236 2.068519 GCTTGCCGAAATTTTTGGAGG 58.931 47.619 18.05 8.42 0.00 4.30
2394 3242 2.028476 CCGAAATTTTTGGAGGTTCCCC 60.028 50.000 9.52 0.00 35.03 4.81
2395 3243 2.897326 CGAAATTTTTGGAGGTTCCCCT 59.103 45.455 0.00 0.00 46.66 4.79
2396 3244 3.306019 CGAAATTTTTGGAGGTTCCCCTG 60.306 47.826 0.00 0.00 42.86 4.45
2401 3249 3.171348 GGAGGTTCCCCTGCTGTT 58.829 61.111 0.00 0.00 45.32 3.16
2402 3250 1.002011 GGAGGTTCCCCTGCTGTTC 60.002 63.158 0.00 0.00 45.32 3.18
2403 3251 1.492993 GGAGGTTCCCCTGCTGTTCT 61.493 60.000 0.00 0.00 45.32 3.01
2404 3252 0.322008 GAGGTTCCCCTGCTGTTCTG 60.322 60.000 0.00 0.00 42.86 3.02
2405 3253 0.768221 AGGTTCCCCTGCTGTTCTGA 60.768 55.000 0.00 0.00 40.58 3.27
2406 3254 0.322008 GGTTCCCCTGCTGTTCTGAG 60.322 60.000 0.00 0.00 0.00 3.35
2407 3255 0.322008 GTTCCCCTGCTGTTCTGAGG 60.322 60.000 0.00 0.00 0.00 3.86
2408 3256 0.768221 TTCCCCTGCTGTTCTGAGGT 60.768 55.000 0.00 0.00 0.00 3.85
2409 3257 0.768221 TCCCCTGCTGTTCTGAGGTT 60.768 55.000 0.00 0.00 0.00 3.50
2410 3258 0.984230 CCCCTGCTGTTCTGAGGTTA 59.016 55.000 0.00 0.00 0.00 2.85
2411 3259 1.351017 CCCCTGCTGTTCTGAGGTTAA 59.649 52.381 0.00 0.00 0.00 2.01
2412 3260 2.224769 CCCCTGCTGTTCTGAGGTTAAA 60.225 50.000 0.00 0.00 0.00 1.52
2413 3261 3.486383 CCCTGCTGTTCTGAGGTTAAAA 58.514 45.455 0.00 0.00 0.00 1.52
2414 3262 3.888930 CCCTGCTGTTCTGAGGTTAAAAA 59.111 43.478 0.00 0.00 0.00 1.94
2450 3298 1.525306 GGGGCTATGCGTTGGGTAC 60.525 63.158 0.00 0.00 0.00 3.34
2452 3300 0.393267 GGGCTATGCGTTGGGTACAA 60.393 55.000 0.00 0.00 0.00 2.41
2467 3333 7.201427 CGTTGGGTACAAATAAGCATCAATTTG 60.201 37.037 6.30 6.30 44.78 2.32
2480 3346 6.535274 GCATCAATTTGTTTTTGAAGCTCT 57.465 33.333 6.43 0.00 41.88 4.09
2481 3347 6.951643 GCATCAATTTGTTTTTGAAGCTCTT 58.048 32.000 6.43 0.00 41.88 2.85
2482 3348 8.075593 GCATCAATTTGTTTTTGAAGCTCTTA 57.924 30.769 6.43 0.00 41.88 2.10
2505 3371 6.748333 ATATGCATCAAATAGGACATTCCG 57.252 37.500 0.19 0.00 42.75 4.30
2506 3372 3.884895 TGCATCAAATAGGACATTCCGT 58.115 40.909 0.00 0.00 42.75 4.69
2508 3374 3.003689 GCATCAAATAGGACATTCCGTGG 59.996 47.826 0.00 0.00 42.75 4.94
2510 3376 3.869065 TCAAATAGGACATTCCGTGGAC 58.131 45.455 0.00 0.00 42.75 4.02
2527 3393 5.751243 GTGGACACACAGTGAGTTTATTT 57.249 39.130 7.81 0.00 46.90 1.40
2528 3394 6.131544 GTGGACACACAGTGAGTTTATTTT 57.868 37.500 7.81 0.00 46.90 1.82
2529 3395 6.560711 GTGGACACACAGTGAGTTTATTTTT 58.439 36.000 7.81 0.00 46.90 1.94
2558 3424 7.858382 CGGACTGACATATAGTGAGTTTCTTAG 59.142 40.741 0.00 0.00 45.08 2.18
2571 3437 5.104259 AGTTTCTTAGAGGCTGTTATGGG 57.896 43.478 0.00 0.00 0.00 4.00
2572 3438 4.536489 AGTTTCTTAGAGGCTGTTATGGGT 59.464 41.667 0.00 0.00 0.00 4.51
2573 3439 5.724854 AGTTTCTTAGAGGCTGTTATGGGTA 59.275 40.000 0.00 0.00 0.00 3.69
2574 3440 6.387220 AGTTTCTTAGAGGCTGTTATGGGTAT 59.613 38.462 0.00 0.00 0.00 2.73
2576 3442 2.938956 AGAGGCTGTTATGGGTATGC 57.061 50.000 0.00 0.00 0.00 3.14
2632 3498 0.257328 TCTCCGGCTCTGTCATCTCT 59.743 55.000 0.00 0.00 0.00 3.10
2639 3505 1.690893 GCTCTGTCATCTCTGGCCATA 59.309 52.381 5.51 0.00 0.00 2.74
2670 3546 2.677524 CCACACATGCACCTGGGG 60.678 66.667 0.00 0.00 0.00 4.96
2671 3547 3.376078 CACACATGCACCTGGGGC 61.376 66.667 15.65 15.65 0.00 5.80
2672 3548 3.583380 ACACATGCACCTGGGGCT 61.583 61.111 23.45 4.66 0.00 5.19
2702 3578 3.423539 TCTGCAGCTAGTTTGGTTCAT 57.576 42.857 9.47 0.00 0.00 2.57
2713 3589 1.774110 TTGGTTCATGTGCACACCTT 58.226 45.000 24.37 2.99 0.00 3.50
2753 3629 3.181450 GGTGCCTATTGTAAGCCTGAGAT 60.181 47.826 0.00 0.00 0.00 2.75
2766 3642 3.068590 AGCCTGAGATGGTTGTGTTTTTG 59.931 43.478 0.00 0.00 0.00 2.44
2799 3675 3.231207 ACCTCGTAGGCTGACTATCAT 57.769 47.619 0.00 0.00 39.63 2.45
2803 3679 4.519350 CCTCGTAGGCTGACTATCATACAA 59.481 45.833 0.00 0.00 33.43 2.41
2804 3680 5.335269 CCTCGTAGGCTGACTATCATACAAG 60.335 48.000 0.00 0.00 33.43 3.16
2809 3685 5.204292 AGGCTGACTATCATACAAGAGTCA 58.796 41.667 3.75 3.75 44.55 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.686110 AGTAGGGGACAAGGCGGAG 60.686 63.158 0.00 0.00 0.00 4.63
6 7 1.987855 CAGTAGGGGACAAGGCGGA 60.988 63.158 0.00 0.00 0.00 5.54
7 8 2.240162 GACAGTAGGGGACAAGGCGG 62.240 65.000 0.00 0.00 0.00 6.13
8 9 1.218316 GACAGTAGGGGACAAGGCG 59.782 63.158 0.00 0.00 0.00 5.52
9 10 0.537653 GAGACAGTAGGGGACAAGGC 59.462 60.000 0.00 0.00 0.00 4.35
10 11 0.818296 CGAGACAGTAGGGGACAAGG 59.182 60.000 0.00 0.00 0.00 3.61
11 12 1.473278 GACGAGACAGTAGGGGACAAG 59.527 57.143 0.00 0.00 0.00 3.16
12 13 1.075050 AGACGAGACAGTAGGGGACAA 59.925 52.381 0.00 0.00 0.00 3.18
13 14 0.697079 AGACGAGACAGTAGGGGACA 59.303 55.000 0.00 0.00 0.00 4.02
14 15 1.473278 CAAGACGAGACAGTAGGGGAC 59.527 57.143 0.00 0.00 0.00 4.46
15 16 1.835494 CAAGACGAGACAGTAGGGGA 58.165 55.000 0.00 0.00 0.00 4.81
16 17 0.173708 GCAAGACGAGACAGTAGGGG 59.826 60.000 0.00 0.00 0.00 4.79
17 18 1.133407 GAGCAAGACGAGACAGTAGGG 59.867 57.143 0.00 0.00 0.00 3.53
18 19 1.133407 GGAGCAAGACGAGACAGTAGG 59.867 57.143 0.00 0.00 0.00 3.18
19 20 1.202087 CGGAGCAAGACGAGACAGTAG 60.202 57.143 0.00 0.00 0.00 2.57
20 21 0.803117 CGGAGCAAGACGAGACAGTA 59.197 55.000 0.00 0.00 0.00 2.74
21 22 1.581954 CGGAGCAAGACGAGACAGT 59.418 57.895 0.00 0.00 0.00 3.55
22 23 1.153939 CCGGAGCAAGACGAGACAG 60.154 63.158 0.00 0.00 0.00 3.51
23 24 1.587043 CTCCGGAGCAAGACGAGACA 61.587 60.000 20.67 0.00 0.00 3.41
24 25 1.137825 CTCCGGAGCAAGACGAGAC 59.862 63.158 20.67 0.00 0.00 3.36
25 26 1.303398 ACTCCGGAGCAAGACGAGA 60.303 57.895 31.56 0.00 0.00 4.04
26 27 1.153939 CACTCCGGAGCAAGACGAG 60.154 63.158 31.56 5.63 0.00 4.18
27 28 1.863662 GACACTCCGGAGCAAGACGA 61.864 60.000 31.56 0.00 0.00 4.20
28 29 1.444553 GACACTCCGGAGCAAGACG 60.445 63.158 31.56 14.64 0.00 4.18
29 30 0.389166 CAGACACTCCGGAGCAAGAC 60.389 60.000 31.56 19.99 0.00 3.01
30 31 1.536073 CCAGACACTCCGGAGCAAGA 61.536 60.000 31.56 0.00 0.00 3.02
31 32 1.079543 CCAGACACTCCGGAGCAAG 60.080 63.158 31.56 22.47 0.00 4.01
32 33 1.533033 TCCAGACACTCCGGAGCAA 60.533 57.895 31.56 6.15 0.00 3.91
33 34 1.979155 CTCCAGACACTCCGGAGCA 60.979 63.158 31.56 5.68 39.95 4.26
34 35 2.716017 CCTCCAGACACTCCGGAGC 61.716 68.421 31.56 15.36 44.24 4.70
35 36 2.716017 GCCTCCAGACACTCCGGAG 61.716 68.421 30.11 30.11 45.02 4.63
36 37 2.680352 GCCTCCAGACACTCCGGA 60.680 66.667 2.93 2.93 0.00 5.14
37 38 2.513026 CTTGCCTCCAGACACTCCGG 62.513 65.000 0.00 0.00 0.00 5.14
38 39 1.079543 CTTGCCTCCAGACACTCCG 60.080 63.158 0.00 0.00 0.00 4.63
39 40 1.376553 GCTTGCCTCCAGACACTCC 60.377 63.158 0.00 0.00 0.00 3.85
40 41 1.376553 GGCTTGCCTCCAGACACTC 60.377 63.158 4.11 0.00 0.00 3.51
41 42 2.753029 GGCTTGCCTCCAGACACT 59.247 61.111 4.11 0.00 0.00 3.55
42 43 2.743928 CGGCTTGCCTCCAGACAC 60.744 66.667 10.12 0.00 0.00 3.67
43 44 4.704833 GCGGCTTGCCTCCAGACA 62.705 66.667 10.12 0.00 37.76 3.41
76 77 4.498520 AGATCGAGGCACGGCGTG 62.499 66.667 33.96 33.96 42.82 5.34
77 78 4.194720 GAGATCGAGGCACGGCGT 62.195 66.667 6.77 6.77 42.82 5.68
78 79 4.933064 GGAGATCGAGGCACGGCG 62.933 72.222 4.80 4.80 42.82 6.46
79 80 3.838271 TGGAGATCGAGGCACGGC 61.838 66.667 4.15 0.00 42.82 5.68
80 81 1.101635 TAGTGGAGATCGAGGCACGG 61.102 60.000 4.15 0.00 42.82 4.94
81 82 0.309302 CTAGTGGAGATCGAGGCACG 59.691 60.000 0.00 0.00 44.09 5.34
82 83 0.671251 CCTAGTGGAGATCGAGGCAC 59.329 60.000 0.00 0.00 34.57 5.01
83 84 0.551396 TCCTAGTGGAGATCGAGGCA 59.449 55.000 0.00 0.00 37.46 4.75
84 85 1.816224 GATCCTAGTGGAGATCGAGGC 59.184 57.143 0.00 0.00 46.91 4.70
85 86 3.009033 AGAGATCCTAGTGGAGATCGAGG 59.991 52.174 0.00 0.00 46.91 4.63
86 87 4.002982 CAGAGATCCTAGTGGAGATCGAG 58.997 52.174 0.00 0.00 46.91 4.04
87 88 3.648545 TCAGAGATCCTAGTGGAGATCGA 59.351 47.826 0.00 0.00 46.91 3.59
88 89 3.751175 GTCAGAGATCCTAGTGGAGATCG 59.249 52.174 0.00 0.00 46.91 3.69
89 90 4.079253 GGTCAGAGATCCTAGTGGAGATC 58.921 52.174 0.00 0.00 46.91 2.75
90 91 3.497763 CGGTCAGAGATCCTAGTGGAGAT 60.498 52.174 0.00 0.00 46.91 2.75
91 92 2.158740 CGGTCAGAGATCCTAGTGGAGA 60.159 54.545 0.00 0.00 46.91 3.71
92 93 2.226330 CGGTCAGAGATCCTAGTGGAG 58.774 57.143 0.00 0.00 46.91 3.86
94 95 1.323412 CCGGTCAGAGATCCTAGTGG 58.677 60.000 0.00 0.00 0.00 4.00
95 96 0.671251 GCCGGTCAGAGATCCTAGTG 59.329 60.000 1.90 0.00 0.00 2.74
96 97 0.820074 CGCCGGTCAGAGATCCTAGT 60.820 60.000 1.90 0.00 0.00 2.57
97 98 1.953017 CGCCGGTCAGAGATCCTAG 59.047 63.158 1.90 0.00 0.00 3.02
98 99 2.194212 GCGCCGGTCAGAGATCCTA 61.194 63.158 1.90 0.00 0.00 2.94
99 100 3.532155 GCGCCGGTCAGAGATCCT 61.532 66.667 1.90 0.00 0.00 3.24
100 101 3.532155 AGCGCCGGTCAGAGATCC 61.532 66.667 2.29 0.00 0.00 3.36
101 102 2.279120 CAGCGCCGGTCAGAGATC 60.279 66.667 2.29 0.00 0.00 2.75
102 103 4.521062 GCAGCGCCGGTCAGAGAT 62.521 66.667 2.29 0.00 0.00 2.75
115 116 0.455633 CAAAATGCTCACTCCGCAGC 60.456 55.000 0.00 0.00 41.22 5.25
131 132 2.616256 CCAGCAGATCACAGCCTACAAA 60.616 50.000 0.00 0.00 0.00 2.83
139 140 1.812922 GTCCGCCAGCAGATCACAG 60.813 63.158 0.00 0.00 0.00 3.66
140 141 2.265739 GTCCGCCAGCAGATCACA 59.734 61.111 0.00 0.00 0.00 3.58
167 168 2.609984 GCTCCGAGATCATCATCCACAG 60.610 54.545 0.00 0.00 0.00 3.66
168 169 1.342496 GCTCCGAGATCATCATCCACA 59.658 52.381 0.00 0.00 0.00 4.17
170 171 0.600057 CGCTCCGAGATCATCATCCA 59.400 55.000 0.00 0.00 0.00 3.41
184 185 1.303309 CAATCCATTCAGTCCGCTCC 58.697 55.000 0.00 0.00 0.00 4.70
189 190 3.634397 TCACTCCAATCCATTCAGTCC 57.366 47.619 0.00 0.00 0.00 3.85
192 193 3.630769 CACCATCACTCCAATCCATTCAG 59.369 47.826 0.00 0.00 0.00 3.02
215 217 1.674057 CACTCCCAAGCTCCGAACT 59.326 57.895 0.00 0.00 0.00 3.01
216 218 1.376037 CCACTCCCAAGCTCCGAAC 60.376 63.158 0.00 0.00 0.00 3.95
217 219 3.068881 CCACTCCCAAGCTCCGAA 58.931 61.111 0.00 0.00 0.00 4.30
218 220 3.706373 GCCACTCCCAAGCTCCGA 61.706 66.667 0.00 0.00 0.00 4.55
220 222 4.785453 CCGCCACTCCCAAGCTCC 62.785 72.222 0.00 0.00 0.00 4.70
238 240 2.264794 CTTTCCCTCCCGTCCGTG 59.735 66.667 0.00 0.00 0.00 4.94
239 241 3.001406 CCTTTCCCTCCCGTCCGT 61.001 66.667 0.00 0.00 0.00 4.69
241 243 1.002502 CAACCTTTCCCTCCCGTCC 60.003 63.158 0.00 0.00 0.00 4.79
245 247 2.623418 ATTTCCAACCTTTCCCTCCC 57.377 50.000 0.00 0.00 0.00 4.30
249 251 4.867086 TCATCCTATTTCCAACCTTTCCC 58.133 43.478 0.00 0.00 0.00 3.97
253 255 6.162241 ACCCTATTCATCCTATTTCCAACCTT 59.838 38.462 0.00 0.00 0.00 3.50
257 259 7.219601 TCAACCCTATTCATCCTATTTCCAA 57.780 36.000 0.00 0.00 0.00 3.53
260 262 6.944862 AGCATCAACCCTATTCATCCTATTTC 59.055 38.462 0.00 0.00 0.00 2.17
272 274 4.082245 CCGAAAAACAAGCATCAACCCTAT 60.082 41.667 0.00 0.00 0.00 2.57
282 284 5.404066 GCTATTTTAAGCCGAAAAACAAGCA 59.596 36.000 14.53 0.00 37.71 3.91
286 288 7.675962 TCTAGCTATTTTAAGCCGAAAAACA 57.324 32.000 0.00 0.00 43.86 2.83
290 292 7.681065 GCCAAATCTAGCTATTTTAAGCCGAAA 60.681 37.037 0.00 0.00 43.86 3.46
292 294 5.238650 GCCAAATCTAGCTATTTTAAGCCGA 59.761 40.000 0.00 0.00 43.86 5.54
293 295 5.452777 GCCAAATCTAGCTATTTTAAGCCG 58.547 41.667 0.00 0.00 43.86 5.52
299 301 4.474394 GAGGGGCCAAATCTAGCTATTTT 58.526 43.478 4.39 0.00 0.00 1.82
307 309 3.655358 CCCGAGGGGCCAAATCTA 58.345 61.111 4.39 0.00 35.35 1.98
331 333 0.598680 ATTCATGCCGTCGCTCTAGC 60.599 55.000 0.00 0.00 35.36 3.42
333 335 3.272766 CATTCATGCCGTCGCTCTA 57.727 52.632 0.00 0.00 35.36 2.43
334 336 4.115279 CATTCATGCCGTCGCTCT 57.885 55.556 0.00 0.00 35.36 4.09
345 347 1.598962 CCGGCGAGGATGCATTCAT 60.599 57.895 9.30 0.00 45.00 2.57
359 361 0.657840 CCAAAACTCATCGATCCGGC 59.342 55.000 0.00 0.00 0.00 6.13
377 379 3.520862 CCCATGCGGACACATGCC 61.521 66.667 0.00 0.00 44.98 4.40
380 382 2.125147 CGACCCATGCGGACACAT 60.125 61.111 7.17 0.00 34.64 3.21
397 399 1.448540 CGCCACATCAGACAGGGAC 60.449 63.158 0.00 0.00 0.00 4.46
399 401 2.124983 CCGCCACATCAGACAGGG 60.125 66.667 0.00 0.00 0.00 4.45
400 402 1.448540 GTCCGCCACATCAGACAGG 60.449 63.158 0.00 0.00 0.00 4.00
402 404 2.662596 GGTCCGCCACATCAGACA 59.337 61.111 0.00 0.00 34.09 3.41
409 415 3.716195 CCAGATGGGTCCGCCACA 61.716 66.667 0.00 0.00 36.17 4.17
430 436 1.269998 GGATATGAGAAGGTCCGGTCG 59.730 57.143 0.00 0.00 0.00 4.79
439 445 7.895975 TCATATTTGAAGCGGATATGAGAAG 57.104 36.000 0.00 0.00 37.67 2.85
441 447 7.386025 CAGTTCATATTTGAAGCGGATATGAGA 59.614 37.037 0.00 0.00 42.41 3.27
457 463 7.254556 CGGCATCGCATATATTCAGTTCATATT 60.255 37.037 0.00 0.00 0.00 1.28
470 476 1.471501 GGCTCATCGGCATCGCATATA 60.472 52.381 0.00 0.00 38.25 0.86
473 479 2.667536 GGCTCATCGGCATCGCAT 60.668 61.111 0.00 0.00 38.25 4.73
474 480 4.916293 GGGCTCATCGGCATCGCA 62.916 66.667 0.00 0.00 40.61 5.10
476 482 1.168407 ATTTGGGCTCATCGGCATCG 61.168 55.000 0.00 0.00 40.61 3.84
478 484 1.168407 CGATTTGGGCTCATCGGCAT 61.168 55.000 1.48 0.00 38.91 4.40
479 485 1.819208 CGATTTGGGCTCATCGGCA 60.819 57.895 1.48 0.00 38.91 5.69
480 486 0.531974 TACGATTTGGGCTCATCGGC 60.532 55.000 13.79 0.00 45.40 5.54
481 487 2.169832 ATACGATTTGGGCTCATCGG 57.830 50.000 13.79 0.00 45.40 4.18
482 488 3.056821 TCCTATACGATTTGGGCTCATCG 60.057 47.826 8.03 8.03 46.33 3.84
484 490 4.532126 TGATCCTATACGATTTGGGCTCAT 59.468 41.667 0.00 0.00 0.00 2.90
485 491 3.901222 TGATCCTATACGATTTGGGCTCA 59.099 43.478 0.00 0.00 0.00 4.26
486 492 4.537135 TGATCCTATACGATTTGGGCTC 57.463 45.455 0.00 0.00 0.00 4.70
487 493 4.974645 TTGATCCTATACGATTTGGGCT 57.025 40.909 0.00 0.00 0.00 5.19
488 494 6.206634 TCAAATTGATCCTATACGATTTGGGC 59.793 38.462 15.27 0.00 42.93 5.36
489 495 7.094634 CCTCAAATTGATCCTATACGATTTGGG 60.095 40.741 15.27 13.13 42.94 4.12
492 498 8.432805 ACTCCTCAAATTGATCCTATACGATTT 58.567 33.333 0.00 0.00 32.42 2.17
495 501 6.294010 CGACTCCTCAAATTGATCCTATACGA 60.294 42.308 0.00 0.00 0.00 3.43
503 509 3.619038 GTGTCCGACTCCTCAAATTGATC 59.381 47.826 0.00 0.00 0.00 2.92
505 511 2.632996 AGTGTCCGACTCCTCAAATTGA 59.367 45.455 0.00 0.00 0.00 2.57
506 512 2.996621 GAGTGTCCGACTCCTCAAATTG 59.003 50.000 11.62 0.00 44.95 2.32
507 513 3.320673 GAGTGTCCGACTCCTCAAATT 57.679 47.619 11.62 0.00 44.95 1.82
524 530 6.227298 ACAAAATCATGATCTAGTCCGAGT 57.773 37.500 9.06 0.00 0.00 4.18
525 531 6.074623 CGAACAAAATCATGATCTAGTCCGAG 60.075 42.308 9.06 0.00 0.00 4.63
526 532 5.748630 CGAACAAAATCATGATCTAGTCCGA 59.251 40.000 9.06 0.00 0.00 4.55
527 533 5.050769 CCGAACAAAATCATGATCTAGTCCG 60.051 44.000 9.06 7.27 0.00 4.79
528 534 5.817816 ACCGAACAAAATCATGATCTAGTCC 59.182 40.000 9.06 0.00 0.00 3.85
530 536 8.964476 ATAACCGAACAAAATCATGATCTAGT 57.036 30.769 9.06 4.93 0.00 2.57
535 541 9.787532 CAGTTAATAACCGAACAAAATCATGAT 57.212 29.630 1.18 1.18 0.00 2.45
536 542 8.240682 CCAGTTAATAACCGAACAAAATCATGA 58.759 33.333 0.00 0.00 0.00 3.07
537 543 7.487829 CCCAGTTAATAACCGAACAAAATCATG 59.512 37.037 0.00 0.00 0.00 3.07
538 544 7.394923 TCCCAGTTAATAACCGAACAAAATCAT 59.605 33.333 0.00 0.00 0.00 2.45
540 546 7.025365 GTCCCAGTTAATAACCGAACAAAATC 58.975 38.462 0.00 0.00 0.00 2.17
541 547 6.348704 CGTCCCAGTTAATAACCGAACAAAAT 60.349 38.462 0.00 0.00 0.00 1.82
543 549 4.451774 CGTCCCAGTTAATAACCGAACAAA 59.548 41.667 0.00 0.00 0.00 2.83
544 550 3.995705 CGTCCCAGTTAATAACCGAACAA 59.004 43.478 0.00 0.00 0.00 2.83
546 552 3.588955 ACGTCCCAGTTAATAACCGAAC 58.411 45.455 0.00 0.00 0.00 3.95
547 553 3.368323 GGACGTCCCAGTTAATAACCGAA 60.368 47.826 24.75 0.00 34.14 4.30
548 554 2.166254 GGACGTCCCAGTTAATAACCGA 59.834 50.000 24.75 0.00 34.14 4.69
549 555 2.543641 GGACGTCCCAGTTAATAACCG 58.456 52.381 24.75 0.00 34.14 4.44
550 556 2.094026 ACGGACGTCCCAGTTAATAACC 60.094 50.000 28.52 0.00 34.14 2.85
551 557 3.236632 ACGGACGTCCCAGTTAATAAC 57.763 47.619 28.52 0.00 34.14 1.89
552 558 3.673052 CGAACGGACGTCCCAGTTAATAA 60.673 47.826 28.52 0.00 33.83 1.40
555 561 0.039256 CGAACGGACGTCCCAGTTAA 60.039 55.000 28.52 0.00 33.83 2.01
556 562 1.580942 CGAACGGACGTCCCAGTTA 59.419 57.895 28.52 0.00 33.83 2.24
557 563 2.337532 CGAACGGACGTCCCAGTT 59.662 61.111 28.52 25.38 35.46 3.16
558 564 3.677648 CCGAACGGACGTCCCAGT 61.678 66.667 28.52 18.55 37.50 4.00
559 565 3.367743 TCCGAACGGACGTCCCAG 61.368 66.667 28.52 17.85 39.76 4.45
568 574 0.933097 CTCAATGCTCATCCGAACGG 59.067 55.000 6.94 6.94 0.00 4.44
569 575 0.933097 CCTCAATGCTCATCCGAACG 59.067 55.000 0.00 0.00 0.00 3.95
570 576 2.208431 CTCCTCAATGCTCATCCGAAC 58.792 52.381 0.00 0.00 0.00 3.95
571 577 1.473965 GCTCCTCAATGCTCATCCGAA 60.474 52.381 0.00 0.00 0.00 4.30
572 578 0.105593 GCTCCTCAATGCTCATCCGA 59.894 55.000 0.00 0.00 0.00 4.55
573 579 0.883814 GGCTCCTCAATGCTCATCCG 60.884 60.000 0.00 0.00 0.00 4.18
574 580 0.536915 GGGCTCCTCAATGCTCATCC 60.537 60.000 0.00 0.00 0.00 3.51
575 581 0.182061 TGGGCTCCTCAATGCTCATC 59.818 55.000 0.00 0.00 34.40 2.92
576 582 0.851469 ATGGGCTCCTCAATGCTCAT 59.149 50.000 0.00 0.00 44.11 2.90
577 583 0.106868 CATGGGCTCCTCAATGCTCA 60.107 55.000 0.00 0.00 44.30 4.26
617 623 1.032114 CCTCGGCCCATCAAAACTCC 61.032 60.000 0.00 0.00 0.00 3.85
619 625 1.678970 GCCTCGGCCCATCAAAACT 60.679 57.895 0.00 0.00 34.56 2.66
680 689 1.227292 GAATTCGCCTCGTCTCCCC 60.227 63.158 0.00 0.00 0.00 4.81
719 728 1.718757 GATGATGACCAGCAACGGCC 61.719 60.000 0.00 0.00 42.56 6.13
756 765 7.697747 AAAGCATTTTGGTCAAGAGCATCTCT 61.698 38.462 2.50 0.00 39.74 3.10
850 859 2.349532 GCTGGTTGCTTCGTTTCTACAC 60.350 50.000 0.00 0.00 38.95 2.90
897 907 5.108517 GTCAAAGTGGAAGTCATTTTGCAA 58.891 37.500 0.00 0.00 46.27 4.08
898 908 4.681744 GTCAAAGTGGAAGTCATTTTGCA 58.318 39.130 8.46 0.00 46.27 4.08
940 950 5.754890 GGTTGGTACGTGTATAAATAGGTGG 59.245 44.000 0.00 0.00 0.00 4.61
948 964 4.142293 TGCGTATGGTTGGTACGTGTATAA 60.142 41.667 0.00 0.00 44.89 0.98
1110 1128 0.110464 GCAGCTCGCTCTTGTTGAAC 60.110 55.000 1.48 0.00 37.77 3.18
1112 1130 3.957260 GCAGCTCGCTCTTGTTGA 58.043 55.556 1.48 0.00 37.77 3.18
1352 1374 6.473397 ACTTTTTGCGACAACAAATTTGAA 57.527 29.167 24.64 3.75 39.18 2.69
1360 1382 4.261405 CCAATCCTACTTTTTGCGACAACA 60.261 41.667 0.00 0.00 0.00 3.33
1366 1388 3.296322 TTGCCAATCCTACTTTTTGCG 57.704 42.857 0.00 0.00 0.00 4.85
1382 1404 7.753132 TGAGTATGTATTTCGAAATTGTTTGCC 59.247 33.333 27.10 13.14 0.00 4.52
1401 1423 6.203530 ACACGGCATAATGAGAATTGAGTATG 59.796 38.462 0.00 0.00 0.00 2.39
1402 1424 6.203530 CACACGGCATAATGAGAATTGAGTAT 59.796 38.462 0.00 0.00 0.00 2.12
1403 1425 5.523552 CACACGGCATAATGAGAATTGAGTA 59.476 40.000 0.00 0.00 0.00 2.59
1404 1426 4.333649 CACACGGCATAATGAGAATTGAGT 59.666 41.667 0.00 0.00 0.00 3.41
1405 1427 4.787563 GCACACGGCATAATGAGAATTGAG 60.788 45.833 0.00 0.00 43.97 3.02
1406 1428 3.065233 GCACACGGCATAATGAGAATTGA 59.935 43.478 0.00 0.00 43.97 2.57
1407 1429 3.365832 GCACACGGCATAATGAGAATTG 58.634 45.455 0.00 0.00 43.97 2.32
1408 1430 2.032054 CGCACACGGCATAATGAGAATT 59.968 45.455 0.00 0.00 45.17 2.17
1541 1746 4.095946 AGAATCTCTTCTCCTTGAGCTGT 58.904 43.478 0.00 0.00 37.09 4.40
1625 1830 4.254709 ACCTCTTGCAGCACGCCA 62.255 61.111 0.00 0.00 41.33 5.69
1656 1861 3.119673 GGATACTCGTCATCGCTCATGAT 60.120 47.826 0.00 0.00 43.72 2.45
1685 1890 4.770362 TCCTCCATCCACCGGCGA 62.770 66.667 9.30 0.00 0.00 5.54
1687 1892 1.760875 TAGTCCTCCATCCACCGGC 60.761 63.158 0.00 0.00 0.00 6.13
1770 1975 2.025155 GACGCACTTCCCTCTGATAGA 58.975 52.381 0.00 0.00 0.00 1.98
1844 2049 2.484264 CACACTAACCACAAGCTTAGCC 59.516 50.000 0.00 0.00 0.00 3.93
1845 2050 3.399330 TCACACTAACCACAAGCTTAGC 58.601 45.455 0.00 0.00 0.00 3.09
1850 2055 1.200020 GGCATCACACTAACCACAAGC 59.800 52.381 0.00 0.00 0.00 4.01
1853 2058 1.419762 ACAGGCATCACACTAACCACA 59.580 47.619 0.00 0.00 0.00 4.17
1856 2061 1.453155 CCACAGGCATCACACTAACC 58.547 55.000 0.00 0.00 0.00 2.85
1858 2063 1.064003 ACCCACAGGCATCACACTAA 58.936 50.000 0.00 0.00 36.11 2.24
1860 2065 0.538057 CAACCCACAGGCATCACACT 60.538 55.000 0.00 0.00 36.11 3.55
1861 2066 0.537143 TCAACCCACAGGCATCACAC 60.537 55.000 0.00 0.00 36.11 3.82
1865 2070 3.088532 TGTAATTCAACCCACAGGCATC 58.911 45.455 0.00 0.00 36.11 3.91
1869 2074 2.773487 TCGTGTAATTCAACCCACAGG 58.227 47.619 0.00 0.00 40.04 4.00
1870 2075 4.062293 TCTTCGTGTAATTCAACCCACAG 58.938 43.478 0.00 0.00 0.00 3.66
1887 2733 7.736031 TGTCTTATTTTACGACAGATCTTCG 57.264 36.000 19.20 19.20 42.36 3.79
1924 2770 6.070653 AGTGGCATTGAACAATAACATTCCAT 60.071 34.615 0.00 0.00 0.00 3.41
1941 2787 0.823356 AAACCGAGCACAGTGGCATT 60.823 50.000 1.84 0.00 35.83 3.56
2030 2878 0.253160 TTCCCATGGCCAGGACTAGT 60.253 55.000 21.32 0.00 0.00 2.57
2031 2879 0.471617 CTTCCCATGGCCAGGACTAG 59.528 60.000 21.32 8.61 0.00 2.57
2032 2880 1.635817 GCTTCCCATGGCCAGGACTA 61.636 60.000 21.32 1.89 0.00 2.59
2033 2881 2.988839 GCTTCCCATGGCCAGGACT 61.989 63.158 21.32 0.00 0.00 3.85
2034 2882 2.440980 GCTTCCCATGGCCAGGAC 60.441 66.667 21.32 2.25 0.00 3.85
2035 2883 3.743017 GGCTTCCCATGGCCAGGA 61.743 66.667 21.32 15.01 46.84 3.86
2060 2908 2.636412 GGGTCAGGCTTTTTCGGGC 61.636 63.158 0.00 0.00 0.00 6.13
2061 2909 2.332654 CGGGTCAGGCTTTTTCGGG 61.333 63.158 0.00 0.00 0.00 5.14
2062 2910 2.332654 CCGGGTCAGGCTTTTTCGG 61.333 63.158 0.00 2.50 0.00 4.30
2063 2911 3.263941 CCGGGTCAGGCTTTTTCG 58.736 61.111 0.00 0.00 0.00 3.46
2103 2951 2.147150 GATCAAAATCTAGGCCCGAGC 58.853 52.381 0.00 0.00 38.76 5.03
2104 2952 2.370189 AGGATCAAAATCTAGGCCCGAG 59.630 50.000 0.00 0.00 32.12 4.63
2105 2953 2.104792 CAGGATCAAAATCTAGGCCCGA 59.895 50.000 0.00 0.00 32.12 5.14
2106 2954 2.104792 TCAGGATCAAAATCTAGGCCCG 59.895 50.000 0.00 0.00 32.12 6.13
2107 2955 3.864789 TCAGGATCAAAATCTAGGCCC 57.135 47.619 0.00 0.00 32.12 5.80
2108 2956 4.077822 CCATCAGGATCAAAATCTAGGCC 58.922 47.826 0.00 0.00 36.89 5.19
2109 2957 3.505293 GCCATCAGGATCAAAATCTAGGC 59.495 47.826 0.00 0.00 36.89 3.93
2110 2958 4.077822 GGCCATCAGGATCAAAATCTAGG 58.922 47.826 0.00 0.00 36.89 3.02
2111 2959 3.750130 CGGCCATCAGGATCAAAATCTAG 59.250 47.826 2.24 0.00 36.89 2.43
2112 2960 3.390967 TCGGCCATCAGGATCAAAATCTA 59.609 43.478 2.24 0.00 36.89 1.98
2113 2961 2.173356 TCGGCCATCAGGATCAAAATCT 59.827 45.455 2.24 0.00 36.89 2.40
2114 2962 2.551459 CTCGGCCATCAGGATCAAAATC 59.449 50.000 2.24 0.00 36.89 2.17
2115 2963 2.579873 CTCGGCCATCAGGATCAAAAT 58.420 47.619 2.24 0.00 36.89 1.82
2116 2964 2.018644 GCTCGGCCATCAGGATCAAAA 61.019 52.381 2.24 0.00 36.89 2.44
2117 2965 0.464373 GCTCGGCCATCAGGATCAAA 60.464 55.000 2.24 0.00 36.89 2.69
2118 2966 1.146930 GCTCGGCCATCAGGATCAA 59.853 57.895 2.24 0.00 36.89 2.57
2119 2967 2.824546 GCTCGGCCATCAGGATCA 59.175 61.111 2.24 0.00 36.89 2.92
2146 2994 2.678580 AAAAACGATGGGCCCGGG 60.679 61.111 19.09 19.09 0.00 5.73
2147 2995 2.571231 CAAAAACGATGGGCCCGG 59.429 61.111 19.37 11.81 0.00 5.73
2148 2996 2.126110 GCAAAAACGATGGGCCCG 60.126 61.111 19.37 7.98 0.00 6.13
2149 2997 2.126110 CGCAAAAACGATGGGCCC 60.126 61.111 17.59 17.59 34.06 5.80
2152 3000 1.455408 GAAAAGCGCAAAAACGATGGG 59.545 47.619 11.47 0.00 34.06 4.00
2153 3001 2.153627 CAGAAAAGCGCAAAAACGATGG 59.846 45.455 11.47 0.00 34.06 3.51
2154 3002 3.042189 TCAGAAAAGCGCAAAAACGATG 58.958 40.909 11.47 0.00 34.06 3.84
2155 3003 3.347958 TCAGAAAAGCGCAAAAACGAT 57.652 38.095 11.47 0.00 34.06 3.73
2156 3004 2.834574 TCAGAAAAGCGCAAAAACGA 57.165 40.000 11.47 0.00 34.06 3.85
2157 3005 3.898005 TTTCAGAAAAGCGCAAAAACG 57.102 38.095 11.47 0.00 0.00 3.60
2158 3006 4.577639 CCTTTTCAGAAAAGCGCAAAAAC 58.422 39.130 24.95 0.00 45.05 2.43
2159 3007 3.063316 GCCTTTTCAGAAAAGCGCAAAAA 59.937 39.130 27.39 3.80 45.05 1.94
2160 3008 2.607180 GCCTTTTCAGAAAAGCGCAAAA 59.393 40.909 27.39 4.70 45.05 2.44
2161 3009 2.200899 GCCTTTTCAGAAAAGCGCAAA 58.799 42.857 27.39 0.00 45.05 3.68
2162 3010 1.537990 GGCCTTTTCAGAAAAGCGCAA 60.538 47.619 30.17 6.88 45.05 4.85
2163 3011 0.031994 GGCCTTTTCAGAAAAGCGCA 59.968 50.000 30.17 7.44 45.05 6.09
2164 3012 0.667487 GGGCCTTTTCAGAAAAGCGC 60.667 55.000 24.95 25.48 45.05 5.92
2165 3013 0.387239 CGGGCCTTTTCAGAAAAGCG 60.387 55.000 24.95 19.78 45.05 4.68
2166 3014 0.038251 CCGGGCCTTTTCAGAAAAGC 60.038 55.000 24.95 20.00 45.05 3.51
2167 3015 0.038251 GCCGGGCCTTTTCAGAAAAG 60.038 55.000 23.82 23.82 45.78 2.27
2168 3016 0.757188 TGCCGGGCCTTTTCAGAAAA 60.757 50.000 17.97 8.09 0.00 2.29
2169 3017 1.152652 TGCCGGGCCTTTTCAGAAA 60.153 52.632 17.97 0.00 0.00 2.52
2170 3018 1.603455 CTGCCGGGCCTTTTCAGAA 60.603 57.895 17.97 0.00 0.00 3.02
2171 3019 2.034066 CTGCCGGGCCTTTTCAGA 59.966 61.111 17.97 0.00 0.00 3.27
2172 3020 3.064324 CCTGCCGGGCCTTTTCAG 61.064 66.667 17.97 5.64 0.00 3.02
2181 3029 3.810896 GCGTAAAAGCCTGCCGGG 61.811 66.667 2.18 0.00 38.36 5.73
2182 3030 4.160635 CGCGTAAAAGCCTGCCGG 62.161 66.667 0.00 0.00 0.00 6.13
2183 3031 2.827959 GAACGCGTAAAAGCCTGCCG 62.828 60.000 14.46 0.00 0.00 5.69
2184 3032 1.154282 GAACGCGTAAAAGCCTGCC 60.154 57.895 14.46 0.00 0.00 4.85
2185 3033 1.509162 CGAACGCGTAAAAGCCTGC 60.509 57.895 14.46 0.00 0.00 4.85
2186 3034 1.131826 CCGAACGCGTAAAAGCCTG 59.868 57.895 14.46 0.00 35.23 4.85
2187 3035 2.674084 GCCGAACGCGTAAAAGCCT 61.674 57.895 14.46 0.00 35.23 4.58
2188 3036 2.202260 GCCGAACGCGTAAAAGCC 60.202 61.111 14.46 0.00 35.23 4.35
2189 3037 2.202260 GGCCGAACGCGTAAAAGC 60.202 61.111 14.46 13.64 38.94 3.51
2190 3038 2.095096 CGGCCGAACGCGTAAAAG 59.905 61.111 24.07 2.74 38.94 2.27
2191 3039 2.355599 TCGGCCGAACGCGTAAAA 60.356 55.556 28.99 0.00 38.94 1.52
2192 3040 2.806198 CTCGGCCGAACGCGTAAA 60.806 61.111 30.53 2.79 38.94 2.01
2205 3053 2.206536 TTTTTGGGCCCAAGCTCGG 61.207 57.895 35.02 0.00 45.33 4.63
2206 3054 1.006220 GTTTTTGGGCCCAAGCTCG 60.006 57.895 35.02 0.00 45.33 5.03
2207 3055 1.546029 CTAGTTTTTGGGCCCAAGCTC 59.454 52.381 35.02 26.42 41.29 4.09
2208 3056 1.632589 CTAGTTTTTGGGCCCAAGCT 58.367 50.000 35.02 31.40 39.73 3.74
2209 3057 0.608130 CCTAGTTTTTGGGCCCAAGC 59.392 55.000 35.02 27.17 37.24 4.01
2210 3058 0.608130 GCCTAGTTTTTGGGCCCAAG 59.392 55.000 35.02 23.09 39.96 3.61
2211 3059 2.753319 GCCTAGTTTTTGGGCCCAA 58.247 52.632 34.07 34.07 39.96 4.12
2212 3060 4.531351 GCCTAGTTTTTGGGCCCA 57.469 55.556 24.45 24.45 39.96 5.36
2215 3063 0.683179 ATCGGGCCTAGTTTTTGGGC 60.683 55.000 0.84 0.00 46.59 5.36
2216 3064 2.572290 CTATCGGGCCTAGTTTTTGGG 58.428 52.381 0.84 0.00 0.00 4.12
2217 3065 1.947456 GCTATCGGGCCTAGTTTTTGG 59.053 52.381 0.84 0.00 0.00 3.28
2251 3099 2.036731 AAAAACCTAGGCCCGGGC 59.963 61.111 38.57 38.57 41.06 6.13
2298 3146 1.921869 ATACCTGGCCAAACCTCGGG 61.922 60.000 7.01 4.92 40.22 5.14
2299 3147 0.834612 TATACCTGGCCAAACCTCGG 59.165 55.000 7.01 5.79 40.22 4.63
2300 3148 2.093128 AGTTATACCTGGCCAAACCTCG 60.093 50.000 7.01 0.00 40.22 4.63
2301 3149 3.054655 TCAGTTATACCTGGCCAAACCTC 60.055 47.826 7.01 0.00 40.22 3.85
2302 3150 2.916934 TCAGTTATACCTGGCCAAACCT 59.083 45.455 7.01 0.00 40.22 3.50
2303 3151 3.359695 TCAGTTATACCTGGCCAAACC 57.640 47.619 7.01 0.00 39.84 3.27
2304 3152 4.521256 TGTTTCAGTTATACCTGGCCAAAC 59.479 41.667 7.01 8.15 31.99 2.93
2305 3153 4.730966 TGTTTCAGTTATACCTGGCCAAA 58.269 39.130 7.01 0.00 33.14 3.28
2306 3154 4.374689 TGTTTCAGTTATACCTGGCCAA 57.625 40.909 7.01 0.00 33.14 4.52
2307 3155 4.523083 GATGTTTCAGTTATACCTGGCCA 58.477 43.478 4.71 4.71 33.14 5.36
2308 3156 3.883489 GGATGTTTCAGTTATACCTGGCC 59.117 47.826 0.00 0.00 33.14 5.36
2309 3157 4.523083 TGGATGTTTCAGTTATACCTGGC 58.477 43.478 0.00 0.00 33.14 4.85
2310 3158 6.356556 TCATGGATGTTTCAGTTATACCTGG 58.643 40.000 0.00 0.00 33.14 4.45
2311 3159 7.050377 ACTCATGGATGTTTCAGTTATACCTG 58.950 38.462 0.00 0.00 0.00 4.00
2312 3160 7.200434 ACTCATGGATGTTTCAGTTATACCT 57.800 36.000 0.00 0.00 0.00 3.08
2313 3161 7.770897 AGAACTCATGGATGTTTCAGTTATACC 59.229 37.037 0.00 0.00 0.00 2.73
2314 3162 8.723942 AGAACTCATGGATGTTTCAGTTATAC 57.276 34.615 0.00 0.00 0.00 1.47
2315 3163 9.739276 AAAGAACTCATGGATGTTTCAGTTATA 57.261 29.630 0.00 0.00 0.00 0.98
2316 3164 8.641498 AAAGAACTCATGGATGTTTCAGTTAT 57.359 30.769 0.00 0.00 0.00 1.89
2317 3165 8.352201 CAAAAGAACTCATGGATGTTTCAGTTA 58.648 33.333 0.00 0.00 0.00 2.24
2318 3166 6.966534 AAAGAACTCATGGATGTTTCAGTT 57.033 33.333 0.00 0.00 0.00 3.16
2319 3167 6.239120 CCAAAAGAACTCATGGATGTTTCAGT 60.239 38.462 0.00 0.00 34.82 3.41
2320 3168 6.154445 CCAAAAGAACTCATGGATGTTTCAG 58.846 40.000 0.00 0.00 34.82 3.02
2321 3169 5.598005 ACCAAAAGAACTCATGGATGTTTCA 59.402 36.000 11.12 0.00 36.75 2.69
2322 3170 6.089249 ACCAAAAGAACTCATGGATGTTTC 57.911 37.500 11.12 0.00 36.75 2.78
2323 3171 5.598005 TGACCAAAAGAACTCATGGATGTTT 59.402 36.000 11.12 0.00 36.75 2.83
2324 3172 5.139727 TGACCAAAAGAACTCATGGATGTT 58.860 37.500 11.12 0.00 36.75 2.71
2365 3213 4.493547 CTCCAAAAATTTCGGCAAGCATA 58.506 39.130 0.00 0.00 0.00 3.14
2388 3236 0.322008 CCTCAGAACAGCAGGGGAAC 60.322 60.000 0.00 0.00 0.00 3.62
2414 3262 1.609841 CCCGGTCGCTACTTCCTTTTT 60.610 52.381 0.00 0.00 0.00 1.94
2415 3263 0.036671 CCCGGTCGCTACTTCCTTTT 60.037 55.000 0.00 0.00 0.00 2.27
2416 3264 1.595357 CCCGGTCGCTACTTCCTTT 59.405 57.895 0.00 0.00 0.00 3.11
2417 3265 2.356780 CCCCGGTCGCTACTTCCTT 61.357 63.158 0.00 0.00 0.00 3.36
2418 3266 2.758737 CCCCGGTCGCTACTTCCT 60.759 66.667 0.00 0.00 0.00 3.36
2419 3267 4.525949 GCCCCGGTCGCTACTTCC 62.526 72.222 0.00 0.00 0.00 3.46
2420 3268 1.461911 ATAGCCCCGGTCGCTACTTC 61.462 60.000 19.58 0.00 41.44 3.01
2421 3269 1.457079 ATAGCCCCGGTCGCTACTT 60.457 57.895 19.58 5.57 41.44 2.24
2422 3270 2.197875 ATAGCCCCGGTCGCTACT 59.802 61.111 19.58 8.93 41.44 2.57
2423 3271 2.338984 CATAGCCCCGGTCGCTAC 59.661 66.667 19.58 0.00 41.44 3.58
2424 3272 3.612681 GCATAGCCCCGGTCGCTA 61.613 66.667 19.49 19.49 42.74 4.26
2427 3275 4.524318 AACGCATAGCCCCGGTCG 62.524 66.667 0.00 0.00 0.00 4.79
2428 3276 2.895372 CAACGCATAGCCCCGGTC 60.895 66.667 0.00 0.00 0.00 4.79
2429 3277 4.483243 CCAACGCATAGCCCCGGT 62.483 66.667 0.00 0.00 0.00 5.28
2442 3290 7.962917 CAAATTGATGCTTATTTGTACCCAAC 58.037 34.615 0.00 0.00 37.11 3.77
2467 3333 8.915871 TTGATGCATATAAGAGCTTCAAAAAC 57.084 30.769 16.80 0.00 45.71 2.43
2472 3338 8.377799 TCCTATTTGATGCATATAAGAGCTTCA 58.622 33.333 0.00 8.64 41.35 3.02
2473 3339 8.663911 GTCCTATTTGATGCATATAAGAGCTTC 58.336 37.037 0.00 0.00 36.00 3.86
2474 3340 8.159447 TGTCCTATTTGATGCATATAAGAGCTT 58.841 33.333 0.00 0.00 0.00 3.74
2475 3341 7.683578 TGTCCTATTTGATGCATATAAGAGCT 58.316 34.615 0.00 0.00 0.00 4.09
2476 3342 7.912056 TGTCCTATTTGATGCATATAAGAGC 57.088 36.000 0.00 0.00 0.00 4.09
2478 3344 9.453572 GGAATGTCCTATTTGATGCATATAAGA 57.546 33.333 0.00 0.00 32.53 2.10
2479 3345 8.393366 CGGAATGTCCTATTTGATGCATATAAG 58.607 37.037 0.00 0.00 33.30 1.73
2480 3346 7.882791 ACGGAATGTCCTATTTGATGCATATAA 59.117 33.333 0.00 0.00 33.30 0.98
2481 3347 7.334171 CACGGAATGTCCTATTTGATGCATATA 59.666 37.037 0.00 0.00 33.30 0.86
2482 3348 6.149973 CACGGAATGTCCTATTTGATGCATAT 59.850 38.462 0.00 0.00 33.30 1.78
2485 3351 3.627123 CACGGAATGTCCTATTTGATGCA 59.373 43.478 0.00 0.00 33.30 3.96
2505 3371 5.751243 AAATAAACTCACTGTGTGTCCAC 57.249 39.130 15.00 0.00 42.19 4.02
2506 3372 6.767524 AAAAATAAACTCACTGTGTGTCCA 57.232 33.333 15.00 7.30 34.79 4.02
2526 3392 5.483811 TCACTATATGTCAGTCCGCAAAAA 58.516 37.500 0.00 0.00 0.00 1.94
2527 3393 5.079689 TCACTATATGTCAGTCCGCAAAA 57.920 39.130 0.00 0.00 0.00 2.44
2528 3394 4.159693 ACTCACTATATGTCAGTCCGCAAA 59.840 41.667 0.00 0.00 0.00 3.68
2529 3395 3.699538 ACTCACTATATGTCAGTCCGCAA 59.300 43.478 0.00 0.00 0.00 4.85
2530 3396 3.288092 ACTCACTATATGTCAGTCCGCA 58.712 45.455 0.00 0.00 0.00 5.69
2531 3397 3.992260 ACTCACTATATGTCAGTCCGC 57.008 47.619 0.00 0.00 0.00 5.54
2532 3398 6.137794 AGAAACTCACTATATGTCAGTCCG 57.862 41.667 0.00 0.00 0.00 4.79
2533 3399 8.904834 TCTAAGAAACTCACTATATGTCAGTCC 58.095 37.037 0.00 0.00 0.00 3.85
2534 3400 9.944663 CTCTAAGAAACTCACTATATGTCAGTC 57.055 37.037 0.00 0.00 0.00 3.51
2535 3401 8.908903 CCTCTAAGAAACTCACTATATGTCAGT 58.091 37.037 0.00 0.00 0.00 3.41
2536 3402 7.865385 GCCTCTAAGAAACTCACTATATGTCAG 59.135 40.741 0.00 0.00 0.00 3.51
2537 3403 7.561722 AGCCTCTAAGAAACTCACTATATGTCA 59.438 37.037 0.00 0.00 0.00 3.58
2538 3404 7.865385 CAGCCTCTAAGAAACTCACTATATGTC 59.135 40.741 0.00 0.00 0.00 3.06
2539 3405 7.343316 ACAGCCTCTAAGAAACTCACTATATGT 59.657 37.037 0.00 0.00 0.00 2.29
2540 3406 7.721402 ACAGCCTCTAAGAAACTCACTATATG 58.279 38.462 0.00 0.00 0.00 1.78
2541 3407 7.906199 ACAGCCTCTAAGAAACTCACTATAT 57.094 36.000 0.00 0.00 0.00 0.86
2542 3408 7.719871 AACAGCCTCTAAGAAACTCACTATA 57.280 36.000 0.00 0.00 0.00 1.31
2543 3409 6.613153 AACAGCCTCTAAGAAACTCACTAT 57.387 37.500 0.00 0.00 0.00 2.12
2544 3410 7.363880 CCATAACAGCCTCTAAGAAACTCACTA 60.364 40.741 0.00 0.00 0.00 2.74
2558 3424 1.897560 GGCATACCCATAACAGCCTC 58.102 55.000 0.00 0.00 39.02 4.70
2639 3505 0.250901 GTGTGGAGGTGACATGCCTT 60.251 55.000 0.00 0.00 36.29 4.35
2675 3551 2.112718 CTAGCTGCAGATGGGCCC 59.887 66.667 20.43 17.59 0.00 5.80
2676 3552 0.394899 AAACTAGCTGCAGATGGGCC 60.395 55.000 20.43 0.00 0.00 5.80
2677 3553 0.737219 CAAACTAGCTGCAGATGGGC 59.263 55.000 20.43 1.38 0.00 5.36
2678 3554 1.340405 ACCAAACTAGCTGCAGATGGG 60.340 52.381 20.43 11.54 33.31 4.00
2679 3555 2.119801 ACCAAACTAGCTGCAGATGG 57.880 50.000 20.43 17.17 34.40 3.51
2680 3556 3.076621 TGAACCAAACTAGCTGCAGATG 58.923 45.455 20.43 8.92 0.00 2.90
2713 3589 3.856638 GCACCGAATCTTTCAATGCACAA 60.857 43.478 0.00 0.00 39.02 3.33
2753 3629 1.134848 GCAGCTCCAAAAACACAACCA 60.135 47.619 0.00 0.00 0.00 3.67
2779 3655 2.730934 TGATAGTCAGCCTACGAGGT 57.269 50.000 0.00 0.00 37.80 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.