Multiple sequence alignment - TraesCS3D01G473200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G473200 chr3D 100.000 3333 0 0 1 3333 574859951 574856619 0.000000e+00 6156
1 TraesCS3D01G473200 chr3D 96.429 196 6 1 3138 3333 574849569 574849763 4.150000e-84 322
2 TraesCS3D01G473200 chr3D 85.714 189 23 4 93 279 411006228 411006414 2.620000e-46 196
3 TraesCS3D01G473200 chr3A 90.508 2107 133 23 492 2567 710770510 710772580 0.000000e+00 2721
4 TraesCS3D01G473200 chr3A 82.324 826 109 27 1397 2201 710794720 710795529 0.000000e+00 682
5 TraesCS3D01G473200 chr3A 91.549 426 32 3 75 499 710744061 710744483 4.790000e-163 584
6 TraesCS3D01G473200 chr3A 78.466 743 129 20 1074 1798 710782705 710783434 1.090000e-124 457
7 TraesCS3D01G473200 chr3A 86.154 325 31 6 2822 3146 710772583 710772893 4.120000e-89 339
8 TraesCS3D01G473200 chr3A 90.566 159 13 2 1074 1231 710794409 710794566 3.370000e-50 209
9 TraesCS3D01G473200 chr3A 96.053 76 3 0 1 76 594498257 594498332 1.260000e-24 124
10 TraesCS3D01G473200 chr3B 88.126 1297 116 24 1289 2567 765059845 765061121 0.000000e+00 1507
11 TraesCS3D01G473200 chr3B 89.518 706 34 19 540 1220 765059143 765059833 0.000000e+00 857
12 TraesCS3D01G473200 chr3B 82.648 778 105 21 1397 2164 765307817 765308574 0.000000e+00 662
13 TraesCS3D01G473200 chr3B 78.452 1021 155 32 1397 2386 765108684 765109670 1.020000e-169 606
14 TraesCS3D01G473200 chr3B 90.000 470 41 4 75 544 765058601 765059064 1.320000e-168 603
15 TraesCS3D01G473200 chr3B 88.235 272 32 0 2822 3093 765061124 765061395 3.210000e-85 326
16 TraesCS3D01G473200 chr3B 93.720 207 10 3 3130 3333 766032526 766032732 1.160000e-79 307
17 TraesCS3D01G473200 chr3B 82.710 214 30 6 80 289 811506376 811506166 2.040000e-42 183
18 TraesCS3D01G473200 chr5D 97.368 190 5 0 3144 3333 480816931 480817120 1.150000e-84 324
19 TraesCS3D01G473200 chr5D 97.340 188 5 0 3146 3333 244406984 244407171 1.490000e-83 320
20 TraesCS3D01G473200 chr5D 96.825 189 5 1 3145 3333 480824256 480824069 6.940000e-82 315
21 TraesCS3D01G473200 chr5D 81.000 200 32 4 2611 2808 498473540 498473345 1.600000e-33 154
22 TraesCS3D01G473200 chr5D 92.771 83 6 0 1 83 161050624 161050706 1.620000e-23 121
23 TraesCS3D01G473200 chr4D 97.861 187 4 0 3147 3333 398980880 398981066 1.150000e-84 324
24 TraesCS3D01G473200 chr4D 95.789 190 8 0 3144 3333 119419447 119419258 1.160000e-79 307
25 TraesCS3D01G473200 chr4D 96.257 187 7 0 3147 3333 398986367 398986181 1.160000e-79 307
26 TraesCS3D01G473200 chr4D 89.474 95 7 2 1 92 69190464 69190370 2.100000e-22 117
27 TraesCS3D01G473200 chr1D 96.791 187 6 0 3147 3333 12360081 12359895 2.500000e-81 313
28 TraesCS3D01G473200 chr7D 86.607 224 26 4 2585 2808 593187440 593187659 9.240000e-61 244
29 TraesCS3D01G473200 chr7D 84.574 188 26 3 92 278 595688187 595688002 2.040000e-42 183
30 TraesCS3D01G473200 chr7D 80.531 226 36 7 2587 2811 39776308 39776526 2.060000e-37 167
31 TraesCS3D01G473200 chr4A 84.896 192 27 2 87 278 688473911 688474100 3.390000e-45 193
32 TraesCS3D01G473200 chr7A 83.085 201 32 2 90 289 156269543 156269742 7.350000e-42 182
33 TraesCS3D01G473200 chr7A 78.879 232 37 10 2580 2810 546644740 546644520 2.680000e-31 147
34 TraesCS3D01G473200 chr7B 82.587 201 33 2 90 289 724809731 724809532 3.420000e-40 176
35 TraesCS3D01G473200 chr7B 94.937 79 4 0 1 79 506378347 506378269 1.260000e-24 124
36 TraesCS3D01G473200 chr7B 92.857 84 6 0 1 84 510387555 510387638 4.520000e-24 122
37 TraesCS3D01G473200 chr7B 92.857 84 6 0 1 84 510433691 510433774 4.520000e-24 122
38 TraesCS3D01G473200 chr6A 82.353 204 34 2 87 289 592012757 592012959 3.420000e-40 176
39 TraesCS3D01G473200 chrUn 80.753 239 33 10 2571 2808 17023064 17022838 1.230000e-39 174
40 TraesCS3D01G473200 chrUn 80.753 239 33 10 2571 2808 292133435 292133661 1.230000e-39 174
41 TraesCS3D01G473200 chrUn 80.753 239 33 10 2571 2808 302857050 302856824 1.230000e-39 174
42 TraesCS3D01G473200 chr2D 79.583 240 42 6 2571 2808 500147853 500148087 7.400000e-37 165
43 TraesCS3D01G473200 chr2A 88.571 105 12 0 1076 1180 4047496 4047392 9.710000e-26 128
44 TraesCS3D01G473200 chr2A 96.104 77 3 0 1 77 602770039 602770115 3.490000e-25 126
45 TraesCS3D01G473200 chr5A 77.253 233 41 9 2581 2807 438418916 438419142 3.490000e-25 126
46 TraesCS3D01G473200 chr5A 92.857 84 6 0 1 84 351658102 351658185 4.520000e-24 122
47 TraesCS3D01G473200 chr4B 92.857 84 6 0 1 84 134396303 134396220 4.520000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G473200 chr3D 574856619 574859951 3332 True 6156.00 6156 100.00000 1 3333 1 chr3D.!!$R1 3332
1 TraesCS3D01G473200 chr3A 710770510 710772893 2383 False 1530.00 2721 88.33100 492 3146 2 chr3A.!!$F4 2654
2 TraesCS3D01G473200 chr3A 710782705 710783434 729 False 457.00 457 78.46600 1074 1798 1 chr3A.!!$F3 724
3 TraesCS3D01G473200 chr3A 710794409 710795529 1120 False 445.50 682 86.44500 1074 2201 2 chr3A.!!$F5 1127
4 TraesCS3D01G473200 chr3B 765058601 765061395 2794 False 823.25 1507 88.96975 75 3093 4 chr3B.!!$F4 3018
5 TraesCS3D01G473200 chr3B 765307817 765308574 757 False 662.00 662 82.64800 1397 2164 1 chr3B.!!$F2 767
6 TraesCS3D01G473200 chr3B 765108684 765109670 986 False 606.00 606 78.45200 1397 2386 1 chr3B.!!$F1 989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.716108 GCACACACGCACACTCTATC 59.284 55.0 0.0 0.0 0.0 2.08 F
1172 1293 0.109723 GTCAACCCCTGCACTTGGTA 59.890 55.0 0.0 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 1868 0.032952 TTACAGGAAACGCAGCGTCT 59.967 50.0 23.22 7.4 39.99 4.18 R
2725 2920 0.103208 GAGTACACATCCGGCCTCTG 59.897 60.0 0.00 0.0 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.870221 GTTCCAAATTACTTATCGCGGT 57.130 40.909 6.13 0.00 0.00 5.68
22 23 5.225899 GTTCCAAATTACTTATCGCGGTT 57.774 39.130 6.13 0.00 0.00 4.44
23 24 5.633927 GTTCCAAATTACTTATCGCGGTTT 58.366 37.500 6.13 0.00 0.00 3.27
24 25 5.883503 TCCAAATTACTTATCGCGGTTTT 57.116 34.783 6.13 0.00 0.00 2.43
25 26 6.981762 TCCAAATTACTTATCGCGGTTTTA 57.018 33.333 6.13 0.00 0.00 1.52
26 27 7.007313 TCCAAATTACTTATCGCGGTTTTAG 57.993 36.000 6.13 0.00 0.00 1.85
27 28 6.594937 TCCAAATTACTTATCGCGGTTTTAGT 59.405 34.615 6.13 6.49 0.00 2.24
28 29 7.119553 TCCAAATTACTTATCGCGGTTTTAGTT 59.880 33.333 6.13 0.00 0.00 2.24
29 30 7.427318 CCAAATTACTTATCGCGGTTTTAGTTC 59.573 37.037 6.13 0.00 0.00 3.01
30 31 7.599630 AATTACTTATCGCGGTTTTAGTTCA 57.400 32.000 6.13 0.00 0.00 3.18
31 32 7.599630 ATTACTTATCGCGGTTTTAGTTCAA 57.400 32.000 6.13 0.00 0.00 2.69
32 33 5.927954 ACTTATCGCGGTTTTAGTTCAAA 57.072 34.783 6.13 0.00 0.00 2.69
33 34 6.490566 ACTTATCGCGGTTTTAGTTCAAAT 57.509 33.333 6.13 0.00 0.00 2.32
34 35 6.905578 ACTTATCGCGGTTTTAGTTCAAATT 58.094 32.000 6.13 0.00 0.00 1.82
35 36 7.364970 ACTTATCGCGGTTTTAGTTCAAATTT 58.635 30.769 6.13 0.00 0.00 1.82
36 37 7.325097 ACTTATCGCGGTTTTAGTTCAAATTTG 59.675 33.333 12.15 12.15 0.00 2.32
37 38 5.171147 TCGCGGTTTTAGTTCAAATTTGA 57.829 34.783 16.91 16.91 34.92 2.69
38 39 5.579718 TCGCGGTTTTAGTTCAAATTTGAA 58.420 33.333 26.01 26.01 44.31 2.69
53 54 9.658799 TTCAAATTTGAACTAAAACCATGACAA 57.341 25.926 26.01 1.80 41.88 3.18
54 55 9.311916 TCAAATTTGAACTAAAACCATGACAAG 57.688 29.630 18.45 0.00 33.55 3.16
55 56 9.097257 CAAATTTGAACTAAAACCATGACAAGT 57.903 29.630 13.08 0.00 0.00 3.16
61 62 9.743057 TGAACTAAAACCATGACAAGTAATTTG 57.257 29.630 0.00 0.00 42.68 2.32
62 63 9.191995 GAACTAAAACCATGACAAGTAATTTGG 57.808 33.333 0.00 0.00 41.25 3.28
63 64 8.472007 ACTAAAACCATGACAAGTAATTTGGA 57.528 30.769 0.00 0.00 41.25 3.53
64 65 8.919145 ACTAAAACCATGACAAGTAATTTGGAA 58.081 29.630 0.00 0.00 41.25 3.53
65 66 9.927668 CTAAAACCATGACAAGTAATTTGGAAT 57.072 29.630 0.00 0.00 41.25 3.01
66 67 8.606040 AAAACCATGACAAGTAATTTGGAATG 57.394 30.769 0.00 0.39 41.25 2.67
68 69 6.015918 ACCATGACAAGTAATTTGGAATGGA 58.984 36.000 20.51 0.00 46.49 3.41
69 70 6.153340 ACCATGACAAGTAATTTGGAATGGAG 59.847 38.462 20.51 5.28 46.49 3.86
70 71 6.406177 CCATGACAAGTAATTTGGAATGGAGG 60.406 42.308 13.50 0.00 46.49 4.30
71 72 5.016173 TGACAAGTAATTTGGAATGGAGGG 58.984 41.667 0.00 0.00 41.25 4.30
72 73 5.222233 TGACAAGTAATTTGGAATGGAGGGA 60.222 40.000 0.00 0.00 41.25 4.20
73 74 5.264395 ACAAGTAATTTGGAATGGAGGGAG 58.736 41.667 0.00 0.00 41.25 4.30
83 84 3.898741 GGAATGGAGGGAGTAGTTCCTAG 59.101 52.174 0.00 0.00 45.98 3.02
118 119 3.185246 ACACAGTACATAGGCAGATGC 57.815 47.619 0.00 0.00 41.14 3.91
140 141 4.383052 GCTCATACATACGCACATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
144 145 3.717707 ACATACGCACATACACTCATCC 58.282 45.455 0.00 0.00 0.00 3.51
157 158 3.261580 CACTCATCCTTATGAACGCACA 58.738 45.455 0.00 0.00 41.57 4.57
167 168 2.808958 GAACGCACACACGCACACT 61.809 57.895 0.00 0.00 36.19 3.55
172 173 0.716108 GCACACACGCACACTCTATC 59.284 55.000 0.00 0.00 0.00 2.08
173 174 0.984829 CACACACGCACACTCTATCG 59.015 55.000 0.00 0.00 0.00 2.92
181 182 2.323959 GCACACTCTATCGCTATGAGC 58.676 52.381 0.00 0.00 38.02 4.26
184 185 2.294791 ACACTCTATCGCTATGAGCACC 59.705 50.000 0.00 0.00 42.58 5.01
186 187 2.817258 ACTCTATCGCTATGAGCACCTC 59.183 50.000 0.00 0.00 42.58 3.85
208 209 2.615869 GAGAGATTGAGCCGGCATATC 58.384 52.381 31.54 25.17 0.00 1.63
209 210 1.277557 AGAGATTGAGCCGGCATATCC 59.722 52.381 31.54 18.76 0.00 2.59
211 212 1.277557 AGATTGAGCCGGCATATCCTC 59.722 52.381 31.54 16.99 0.00 3.71
218 219 1.277557 GCCGGCATATCCTCTTGAGAT 59.722 52.381 24.80 0.00 0.00 2.75
232 233 4.415735 TCTTGAGATTGATGAAGTCGTCG 58.584 43.478 0.00 0.00 34.69 5.12
237 238 4.876125 AGATTGATGAAGTCGTCGCATAT 58.124 39.130 0.00 0.00 34.69 1.78
239 240 2.127251 TGATGAAGTCGTCGCATATGC 58.873 47.619 18.08 18.08 34.69 3.14
240 241 1.457303 GATGAAGTCGTCGCATATGCC 59.543 52.381 21.77 7.95 37.91 4.40
243 244 1.523095 GAAGTCGTCGCATATGCCTTC 59.477 52.381 21.77 21.04 37.91 3.46
249 250 2.470821 GTCGCATATGCCTTCGTAGTT 58.529 47.619 21.77 0.00 37.91 2.24
255 256 4.988540 GCATATGCCTTCGTAGTTGACATA 59.011 41.667 17.26 0.00 34.31 2.29
282 283 1.918262 TCCTCCCACTCAATGCAGATT 59.082 47.619 0.00 0.00 0.00 2.40
290 291 2.158769 ACTCAATGCAGATTGCCGGATA 60.159 45.455 5.05 0.00 44.23 2.59
292 293 1.538512 CAATGCAGATTGCCGGATAGG 59.461 52.381 5.05 0.00 44.23 2.57
298 299 2.028930 CAGATTGCCGGATAGGTAGGTC 60.029 54.545 5.05 0.00 43.70 3.85
306 307 3.155501 CGGATAGGTAGGTCAGGTTAGG 58.844 54.545 0.00 0.00 0.00 2.69
404 405 0.883833 CCTTGGAGCGCTGAAACAAT 59.116 50.000 18.48 0.00 0.00 2.71
407 408 1.442769 TGGAGCGCTGAAACAATCTC 58.557 50.000 18.48 0.00 0.00 2.75
408 409 0.729690 GGAGCGCTGAAACAATCTCC 59.270 55.000 18.48 0.84 34.13 3.71
409 410 0.729690 GAGCGCTGAAACAATCTCCC 59.270 55.000 18.48 0.00 0.00 4.30
428 429 6.055588 TCTCCCTACTGTTTCTTGAAACTTG 58.944 40.000 21.81 17.29 33.95 3.16
432 433 6.017852 CCCTACTGTTTCTTGAAACTTGTCTC 60.018 42.308 21.81 0.74 33.95 3.36
447 448 4.348168 ACTTGTCTCTTCTAAGCTTCCCAA 59.652 41.667 0.00 0.00 0.00 4.12
448 449 5.013599 ACTTGTCTCTTCTAAGCTTCCCAAT 59.986 40.000 0.00 0.00 0.00 3.16
500 501 6.838198 TGTTATTTCCGGATATGAAGAACG 57.162 37.500 16.71 0.00 0.00 3.95
515 516 2.845752 GAACGTATGAGCCACGGCCA 62.846 60.000 2.24 3.01 43.59 5.36
556 639 5.640357 TCACTACGTCCCAAAAATCATGTAC 59.360 40.000 0.00 0.00 0.00 2.90
557 640 4.628333 ACTACGTCCCAAAAATCATGTACG 59.372 41.667 0.00 0.00 33.84 3.67
558 641 3.404899 ACGTCCCAAAAATCATGTACGT 58.595 40.909 0.00 0.00 35.20 3.57
559 642 4.567971 ACGTCCCAAAAATCATGTACGTA 58.432 39.130 0.00 0.00 36.99 3.57
570 653 9.490379 AAAAATCATGTACGTAGAAAGTTCTCT 57.510 29.630 0.00 0.00 38.70 3.10
583 666 3.550437 AGTTCTCTAATTGGCGCATCT 57.450 42.857 10.83 0.00 0.00 2.90
647 730 2.424246 GTGTAGACTGTAGACCTGCTCC 59.576 54.545 0.00 0.00 0.00 4.70
667 750 1.521681 GGCCACTGGATAGTCGCAC 60.522 63.158 0.00 0.00 42.04 5.34
690 773 2.097466 CGAAATGCACCACTATTCCACC 59.903 50.000 0.00 0.00 0.00 4.61
857 965 7.334671 GTCAAAATTAGGACGAGAGGAGAAAAT 59.665 37.037 0.00 0.00 0.00 1.82
891 1006 1.609072 AGGAAAGTTCAAAGCTTCGGC 59.391 47.619 0.00 0.00 42.17 5.54
957 1078 0.830648 CCTCCGCTACCATTCTTCCA 59.169 55.000 0.00 0.00 0.00 3.53
958 1079 1.417890 CCTCCGCTACCATTCTTCCAT 59.582 52.381 0.00 0.00 0.00 3.41
969 1090 3.128589 CCATTCTTCCATTGTACCCAACG 59.871 47.826 0.00 0.00 32.26 4.10
1172 1293 0.109723 GTCAACCCCTGCACTTGGTA 59.890 55.000 0.00 0.00 0.00 3.25
1194 1324 1.065401 CATGTCACCTGCAACAACGTT 59.935 47.619 0.00 0.00 0.00 3.99
1247 1377 2.260639 TTCTCCTCCCTGCTCTGAAT 57.739 50.000 0.00 0.00 0.00 2.57
1251 1381 1.836166 TCCTCCCTGCTCTGAATTCTG 59.164 52.381 7.05 6.50 0.00 3.02
1254 1384 3.307975 CCTCCCTGCTCTGAATTCTGAAA 60.308 47.826 14.97 6.80 0.00 2.69
1386 1536 9.743057 CTCCGCAGAATATATAATTAAGAGGAG 57.257 37.037 0.00 0.00 0.00 3.69
1557 1716 8.082242 AGTTACACTCAAAATTTCCTGCATAAC 58.918 33.333 0.00 0.00 0.00 1.89
1662 1821 2.971330 CCTGGTCAGCCTTGATCTCTAT 59.029 50.000 0.00 0.00 35.38 1.98
1709 1868 2.771639 CCTCGCTCGGGAACATCGA 61.772 63.158 0.00 0.00 35.24 3.59
1736 1895 4.436183 GCTGCGTTTCCTGTAAGAATCTTC 60.436 45.833 0.00 0.00 34.07 2.87
1758 1918 1.630244 GCAGCGCTTTCAGATGACGT 61.630 55.000 7.50 0.00 0.00 4.34
1759 1919 0.368227 CAGCGCTTTCAGATGACGTC 59.632 55.000 7.50 9.11 0.00 4.34
1771 1931 5.178061 TCAGATGACGTCATGCTAAAATGT 58.822 37.500 34.48 8.32 36.57 2.71
1774 1938 4.926860 TGACGTCATGCTAAAATGTCTG 57.073 40.909 15.76 0.00 31.62 3.51
1785 1949 5.769662 TGCTAAAATGTCTGTTGTCTCCAAT 59.230 36.000 0.00 0.00 32.11 3.16
1788 1952 6.469782 AAAATGTCTGTTGTCTCCAATTGT 57.530 33.333 4.43 0.00 32.11 2.71
1849 2013 0.823356 GGAACAAGCTTGCAGGTGGA 60.823 55.000 26.27 0.00 0.00 4.02
1875 2039 2.029964 GTCGTTGGGCCGTCTGAA 59.970 61.111 0.00 0.00 0.00 3.02
1885 2049 1.074752 GCCGTCTGAAGAAGCTTCAG 58.925 55.000 27.57 24.18 45.38 3.02
1888 2052 1.447945 GTCTGAAGAAGCTTCAGGCC 58.552 55.000 27.57 18.41 43.33 5.19
1897 2061 4.633769 CTTCAGGCCTTGGAGCTC 57.366 61.111 0.00 4.71 0.00 4.09
1969 2133 0.679505 TTGTCGGGGACTTGACTGAG 59.320 55.000 0.00 0.00 35.41 3.35
1979 2143 3.570559 GACTTGACTGAGCTGTGAGTAC 58.429 50.000 0.00 0.00 0.00 2.73
1982 2146 2.863809 TGACTGAGCTGTGAGTACTGA 58.136 47.619 0.00 0.00 0.00 3.41
1986 2150 4.006989 ACTGAGCTGTGAGTACTGAGTAG 58.993 47.826 0.00 0.00 0.00 2.57
1987 2151 4.006989 CTGAGCTGTGAGTACTGAGTAGT 58.993 47.826 0.00 0.00 40.99 2.73
1989 2153 2.490115 AGCTGTGAGTACTGAGTAGTGC 59.510 50.000 4.39 2.21 39.52 4.40
1990 2154 2.729467 GCTGTGAGTACTGAGTAGTGCG 60.729 54.545 4.39 0.00 43.37 5.34
1991 2155 1.810755 TGTGAGTACTGAGTAGTGCGG 59.189 52.381 4.39 0.00 43.37 5.69
2018 2191 1.811965 TCACACCAGAAATTGCATCCG 59.188 47.619 0.00 0.00 0.00 4.18
2035 2208 1.009829 CCGCATTCTTCCTTCCTTCG 58.990 55.000 0.00 0.00 0.00 3.79
2036 2209 1.009829 CGCATTCTTCCTTCCTTCGG 58.990 55.000 0.00 0.00 0.00 4.30
2189 2383 5.531287 ACGGATTAAGTTCTGCAGTTCTTTT 59.469 36.000 22.87 14.91 0.00 2.27
2226 2420 7.281324 TGTGTACAATACATGTATAGGTTTGGC 59.719 37.037 18.56 10.93 45.87 4.52
2264 2458 7.984050 TGCTAACAAGAATTTTCCAATTGACAA 59.016 29.630 7.12 0.00 32.35 3.18
2388 2583 2.276732 TTCCTTCTGAAACTGCTGGG 57.723 50.000 0.00 0.00 0.00 4.45
2417 2612 4.284178 TGTAGCCTTCTATCCCGTTAAGT 58.716 43.478 0.00 0.00 0.00 2.24
2422 2617 3.490419 CCTTCTATCCCGTTAAGTGTCCG 60.490 52.174 0.00 0.00 0.00 4.79
2423 2618 2.026641 TCTATCCCGTTAAGTGTCCGG 58.973 52.381 0.00 0.00 41.37 5.14
2425 2620 1.269012 ATCCCGTTAAGTGTCCGGAA 58.731 50.000 5.23 0.00 44.41 4.30
2426 2621 1.269012 TCCCGTTAAGTGTCCGGAAT 58.731 50.000 5.23 0.00 44.41 3.01
2430 2625 4.002316 CCCGTTAAGTGTCCGGAATTTAA 58.998 43.478 5.23 8.90 44.41 1.52
2431 2626 4.142838 CCCGTTAAGTGTCCGGAATTTAAC 60.143 45.833 23.62 23.62 44.41 2.01
2461 2656 3.162147 AGAGAGAAAAAGGGGAAAGGC 57.838 47.619 0.00 0.00 0.00 4.35
2463 2658 1.145119 AGAGAAAAAGGGGAAAGGCGT 59.855 47.619 0.00 0.00 0.00 5.68
2480 2675 2.095372 GGCGTAAGGTAGTTGAATGCAC 59.905 50.000 0.00 0.00 38.28 4.57
2554 2749 0.878416 TGCAGTGTTATCGGTTTGGC 59.122 50.000 0.00 0.00 0.00 4.52
2567 2762 9.378551 GTTATCGGTTTGGCATATTCATATCTA 57.621 33.333 0.00 0.00 0.00 1.98
2568 2763 7.849804 ATCGGTTTGGCATATTCATATCTAC 57.150 36.000 0.00 0.00 0.00 2.59
2569 2764 6.170506 TCGGTTTGGCATATTCATATCTACC 58.829 40.000 0.00 0.00 0.00 3.18
2570 2765 5.063438 CGGTTTGGCATATTCATATCTACCG 59.937 44.000 0.00 0.00 0.00 4.02
2571 2766 5.938125 GGTTTGGCATATTCATATCTACCGT 59.062 40.000 0.00 0.00 0.00 4.83
2572 2767 7.101054 GGTTTGGCATATTCATATCTACCGTA 58.899 38.462 0.00 0.00 0.00 4.02
2573 2768 7.769044 GGTTTGGCATATTCATATCTACCGTAT 59.231 37.037 0.00 0.00 0.00 3.06
2574 2769 8.604035 GTTTGGCATATTCATATCTACCGTATG 58.396 37.037 0.00 0.00 0.00 2.39
2575 2770 7.418337 TGGCATATTCATATCTACCGTATGT 57.582 36.000 0.00 0.00 32.63 2.29
2576 2771 7.489160 TGGCATATTCATATCTACCGTATGTC 58.511 38.462 0.00 0.00 32.63 3.06
2577 2772 6.637254 GGCATATTCATATCTACCGTATGTCG 59.363 42.308 0.00 0.00 39.52 4.35
2578 2773 7.194278 GCATATTCATATCTACCGTATGTCGT 58.806 38.462 0.00 0.00 37.94 4.34
2579 2774 7.376336 GCATATTCATATCTACCGTATGTCGTC 59.624 40.741 0.00 0.00 37.94 4.20
2580 2775 4.916099 TCATATCTACCGTATGTCGTCG 57.084 45.455 0.00 0.00 37.94 5.12
2581 2776 4.559153 TCATATCTACCGTATGTCGTCGA 58.441 43.478 0.00 0.00 37.94 4.20
2582 2777 5.173664 TCATATCTACCGTATGTCGTCGAT 58.826 41.667 0.00 0.00 37.94 3.59
2583 2778 5.290400 TCATATCTACCGTATGTCGTCGATC 59.710 44.000 0.00 0.00 37.94 3.69
2584 2779 1.788886 TCTACCGTATGTCGTCGATCG 59.211 52.381 9.36 9.36 41.41 3.69
2585 2780 1.524355 CTACCGTATGTCGTCGATCGT 59.476 52.381 15.94 0.00 40.80 3.73
2586 2781 0.729116 ACCGTATGTCGTCGATCGTT 59.271 50.000 15.94 0.00 40.80 3.85
2587 2782 1.110085 CCGTATGTCGTCGATCGTTG 58.890 55.000 15.94 8.95 40.80 4.10
2588 2783 1.530441 CCGTATGTCGTCGATCGTTGT 60.530 52.381 15.94 0.00 40.80 3.32
2589 2784 2.171567 CGTATGTCGTCGATCGTTGTT 58.828 47.619 15.94 0.00 40.80 2.83
2590 2785 2.591148 CGTATGTCGTCGATCGTTGTTT 59.409 45.455 15.94 0.04 40.80 2.83
2591 2786 3.058520 CGTATGTCGTCGATCGTTGTTTT 59.941 43.478 15.94 0.55 40.80 2.43
2592 2787 3.700130 ATGTCGTCGATCGTTGTTTTC 57.300 42.857 15.94 1.79 40.80 2.29
2593 2788 2.461903 TGTCGTCGATCGTTGTTTTCA 58.538 42.857 15.94 4.29 40.80 2.69
2594 2789 3.054166 TGTCGTCGATCGTTGTTTTCAT 58.946 40.909 15.94 0.00 40.80 2.57
2595 2790 3.120616 TGTCGTCGATCGTTGTTTTCATC 59.879 43.478 15.94 0.00 40.80 2.92
2596 2791 2.340283 TCGTCGATCGTTGTTTTCATCG 59.660 45.455 15.94 5.99 42.28 3.84
2597 2792 2.418714 GTCGATCGTTGTTTTCATCGC 58.581 47.619 15.94 0.00 41.17 4.58
2598 2793 2.092211 GTCGATCGTTGTTTTCATCGCT 59.908 45.455 15.94 0.00 41.17 4.93
2599 2794 2.734606 TCGATCGTTGTTTTCATCGCTT 59.265 40.909 15.94 0.00 41.17 4.68
2600 2795 3.185594 TCGATCGTTGTTTTCATCGCTTT 59.814 39.130 15.94 0.00 41.17 3.51
2601 2796 3.534516 CGATCGTTGTTTTCATCGCTTTC 59.465 43.478 7.03 0.00 41.17 2.62
2602 2797 2.898746 TCGTTGTTTTCATCGCTTTCG 58.101 42.857 0.00 0.00 41.17 3.46
2603 2798 1.969256 CGTTGTTTTCATCGCTTTCGG 59.031 47.619 0.00 0.00 36.47 4.30
2604 2799 2.315901 GTTGTTTTCATCGCTTTCGGG 58.684 47.619 0.00 0.00 36.13 5.14
2605 2800 1.600023 TGTTTTCATCGCTTTCGGGT 58.400 45.000 0.00 0.00 36.13 5.28
2606 2801 1.950909 TGTTTTCATCGCTTTCGGGTT 59.049 42.857 0.00 0.00 36.13 4.11
2607 2802 2.359531 TGTTTTCATCGCTTTCGGGTTT 59.640 40.909 0.00 0.00 36.13 3.27
2608 2803 3.181485 TGTTTTCATCGCTTTCGGGTTTT 60.181 39.130 0.00 0.00 36.13 2.43
2609 2804 4.036498 TGTTTTCATCGCTTTCGGGTTTTA 59.964 37.500 0.00 0.00 36.13 1.52
2610 2805 5.158494 GTTTTCATCGCTTTCGGGTTTTAT 58.842 37.500 0.00 0.00 36.13 1.40
2611 2806 5.379732 TTTCATCGCTTTCGGGTTTTATT 57.620 34.783 0.00 0.00 36.13 1.40
2612 2807 5.379732 TTCATCGCTTTCGGGTTTTATTT 57.620 34.783 0.00 0.00 36.13 1.40
2613 2808 5.379732 TCATCGCTTTCGGGTTTTATTTT 57.620 34.783 0.00 0.00 36.13 1.82
2614 2809 5.774630 TCATCGCTTTCGGGTTTTATTTTT 58.225 33.333 0.00 0.00 36.13 1.94
2615 2810 6.910995 TCATCGCTTTCGGGTTTTATTTTTA 58.089 32.000 0.00 0.00 36.13 1.52
2616 2811 7.540299 TCATCGCTTTCGGGTTTTATTTTTAT 58.460 30.769 0.00 0.00 36.13 1.40
2617 2812 8.030106 TCATCGCTTTCGGGTTTTATTTTTATT 58.970 29.630 0.00 0.00 36.13 1.40
2618 2813 8.652463 CATCGCTTTCGGGTTTTATTTTTATTT 58.348 29.630 0.00 0.00 36.13 1.40
2619 2814 8.590719 TCGCTTTCGGGTTTTATTTTTATTTT 57.409 26.923 0.00 0.00 36.13 1.82
2620 2815 9.043079 TCGCTTTCGGGTTTTATTTTTATTTTT 57.957 25.926 0.00 0.00 36.13 1.94
2646 2841 3.963428 CCGCCTAGGTATAGCTTCATT 57.037 47.619 10.19 0.00 34.51 2.57
2647 2842 3.851098 CCGCCTAGGTATAGCTTCATTC 58.149 50.000 10.19 0.00 34.51 2.67
2648 2843 3.511934 CCGCCTAGGTATAGCTTCATTCT 59.488 47.826 10.19 0.00 34.51 2.40
2649 2844 4.021016 CCGCCTAGGTATAGCTTCATTCTT 60.021 45.833 10.19 0.00 34.51 2.52
2650 2845 4.926238 CGCCTAGGTATAGCTTCATTCTTG 59.074 45.833 10.19 0.00 0.00 3.02
2651 2846 5.279006 CGCCTAGGTATAGCTTCATTCTTGA 60.279 44.000 10.19 0.00 0.00 3.02
2652 2847 6.525629 GCCTAGGTATAGCTTCATTCTTGAA 58.474 40.000 10.19 0.00 39.54 2.69
2653 2848 7.164803 GCCTAGGTATAGCTTCATTCTTGAAT 58.835 38.462 10.19 0.00 40.95 2.57
2654 2849 7.118971 GCCTAGGTATAGCTTCATTCTTGAATG 59.881 40.741 10.19 15.07 40.95 2.67
2655 2850 8.370940 CCTAGGTATAGCTTCATTCTTGAATGA 58.629 37.037 18.67 18.67 40.95 2.57
2656 2851 9.202273 CTAGGTATAGCTTCATTCTTGAATGAC 57.798 37.037 21.33 13.27 40.95 3.06
2657 2852 7.800092 AGGTATAGCTTCATTCTTGAATGACT 58.200 34.615 21.33 18.20 40.95 3.41
2658 2853 8.270744 AGGTATAGCTTCATTCTTGAATGACTT 58.729 33.333 21.33 13.75 40.95 3.01
2659 2854 8.897752 GGTATAGCTTCATTCTTGAATGACTTT 58.102 33.333 21.33 14.64 40.95 2.66
2660 2855 9.713740 GTATAGCTTCATTCTTGAATGACTTTG 57.286 33.333 21.33 14.13 40.95 2.77
2661 2856 5.467705 AGCTTCATTCTTGAATGACTTTGC 58.532 37.500 21.33 20.33 40.95 3.68
2662 2857 5.243283 AGCTTCATTCTTGAATGACTTTGCT 59.757 36.000 21.33 21.63 40.95 3.91
2663 2858 6.432162 AGCTTCATTCTTGAATGACTTTGCTA 59.568 34.615 21.33 8.04 40.95 3.49
2664 2859 7.122353 AGCTTCATTCTTGAATGACTTTGCTAT 59.878 33.333 21.33 9.22 40.95 2.97
2665 2860 7.758528 GCTTCATTCTTGAATGACTTTGCTATT 59.241 33.333 21.33 0.00 40.95 1.73
2666 2861 9.635520 CTTCATTCTTGAATGACTTTGCTATTT 57.364 29.630 21.33 0.00 40.95 1.40
2667 2862 8.975410 TCATTCTTGAATGACTTTGCTATTTG 57.025 30.769 18.67 0.00 34.50 2.32
2668 2863 7.543172 TCATTCTTGAATGACTTTGCTATTTGC 59.457 33.333 18.67 0.00 36.92 3.68
2669 2864 5.713025 TCTTGAATGACTTTGCTATTTGCC 58.287 37.500 0.00 0.00 42.00 4.52
2670 2865 4.095410 TGAATGACTTTGCTATTTGCCG 57.905 40.909 0.00 0.00 42.00 5.69
2671 2866 3.119531 TGAATGACTTTGCTATTTGCCGG 60.120 43.478 0.00 0.00 42.00 6.13
2672 2867 0.525761 TGACTTTGCTATTTGCCGGC 59.474 50.000 22.73 22.73 42.00 6.13
2673 2868 0.525761 GACTTTGCTATTTGCCGGCA 59.474 50.000 29.03 29.03 42.00 5.69
2674 2869 1.134946 GACTTTGCTATTTGCCGGCAT 59.865 47.619 33.25 19.97 42.00 4.40
2675 2870 1.135024 ACTTTGCTATTTGCCGGCATG 60.135 47.619 33.25 20.90 42.00 4.06
2676 2871 1.134753 CTTTGCTATTTGCCGGCATGA 59.865 47.619 33.25 22.70 42.00 3.07
2677 2872 1.401761 TTGCTATTTGCCGGCATGAT 58.598 45.000 33.25 27.52 42.00 2.45
2678 2873 2.268762 TGCTATTTGCCGGCATGATA 57.731 45.000 33.25 27.17 42.00 2.15
2679 2874 1.879380 TGCTATTTGCCGGCATGATAC 59.121 47.619 33.25 20.27 42.00 2.24
2680 2875 2.154462 GCTATTTGCCGGCATGATACT 58.846 47.619 33.25 12.23 35.15 2.12
2681 2876 2.554032 GCTATTTGCCGGCATGATACTT 59.446 45.455 33.25 12.27 35.15 2.24
2682 2877 3.004734 GCTATTTGCCGGCATGATACTTT 59.995 43.478 33.25 11.19 35.15 2.66
2683 2878 2.937469 TTTGCCGGCATGATACTTTG 57.063 45.000 33.25 0.00 0.00 2.77
2684 2879 1.832883 TTGCCGGCATGATACTTTGT 58.167 45.000 33.25 0.00 0.00 2.83
2685 2880 1.093972 TGCCGGCATGATACTTTGTG 58.906 50.000 29.03 0.00 0.00 3.33
2686 2881 1.094785 GCCGGCATGATACTTTGTGT 58.905 50.000 24.80 0.00 0.00 3.72
2687 2882 1.202177 GCCGGCATGATACTTTGTGTG 60.202 52.381 24.80 0.00 0.00 3.82
2688 2883 1.202177 CCGGCATGATACTTTGTGTGC 60.202 52.381 0.00 0.00 0.00 4.57
2689 2884 1.529622 CGGCATGATACTTTGTGTGCG 60.530 52.381 0.00 0.00 33.62 5.34
2690 2885 1.468520 GGCATGATACTTTGTGTGCGT 59.531 47.619 0.00 0.00 33.62 5.24
2691 2886 2.508867 GCATGATACTTTGTGTGCGTG 58.491 47.619 0.00 0.00 0.00 5.34
2692 2887 2.095768 GCATGATACTTTGTGTGCGTGT 60.096 45.455 0.00 0.00 0.00 4.49
2693 2888 3.481839 CATGATACTTTGTGTGCGTGTG 58.518 45.455 0.00 0.00 0.00 3.82
2694 2889 2.556257 TGATACTTTGTGTGCGTGTGT 58.444 42.857 0.00 0.00 0.00 3.72
2695 2890 2.939756 TGATACTTTGTGTGCGTGTGTT 59.060 40.909 0.00 0.00 0.00 3.32
2696 2891 3.375610 TGATACTTTGTGTGCGTGTGTTT 59.624 39.130 0.00 0.00 0.00 2.83
2697 2892 2.256445 ACTTTGTGTGCGTGTGTTTC 57.744 45.000 0.00 0.00 0.00 2.78
2698 2893 1.537638 ACTTTGTGTGCGTGTGTTTCA 59.462 42.857 0.00 0.00 0.00 2.69
2699 2894 2.163412 ACTTTGTGTGCGTGTGTTTCAT 59.837 40.909 0.00 0.00 0.00 2.57
2700 2895 2.185867 TTGTGTGCGTGTGTTTCATG 57.814 45.000 0.00 0.00 36.25 3.07
2701 2896 1.090728 TGTGTGCGTGTGTTTCATGT 58.909 45.000 0.00 0.00 35.64 3.21
2702 2897 1.470494 TGTGTGCGTGTGTTTCATGTT 59.530 42.857 0.00 0.00 35.64 2.71
2703 2898 1.845568 GTGTGCGTGTGTTTCATGTTG 59.154 47.619 0.00 0.00 35.64 3.33
2704 2899 1.202234 TGTGCGTGTGTTTCATGTTGG 60.202 47.619 0.00 0.00 35.64 3.77
2705 2900 1.098869 TGCGTGTGTTTCATGTTGGT 58.901 45.000 0.00 0.00 35.64 3.67
2706 2901 1.474478 TGCGTGTGTTTCATGTTGGTT 59.526 42.857 0.00 0.00 35.64 3.67
2707 2902 1.851666 GCGTGTGTTTCATGTTGGTTG 59.148 47.619 0.00 0.00 35.64 3.77
2708 2903 2.733858 GCGTGTGTTTCATGTTGGTTGT 60.734 45.455 0.00 0.00 35.64 3.32
2709 2904 2.851235 CGTGTGTTTCATGTTGGTTGTG 59.149 45.455 0.00 0.00 0.00 3.33
2710 2905 3.671971 CGTGTGTTTCATGTTGGTTGTGT 60.672 43.478 0.00 0.00 0.00 3.72
2711 2906 3.611986 GTGTGTTTCATGTTGGTTGTGTG 59.388 43.478 0.00 0.00 0.00 3.82
2712 2907 3.256879 TGTGTTTCATGTTGGTTGTGTGT 59.743 39.130 0.00 0.00 0.00 3.72
2713 2908 4.459337 TGTGTTTCATGTTGGTTGTGTGTA 59.541 37.500 0.00 0.00 0.00 2.90
2714 2909 5.126222 TGTGTTTCATGTTGGTTGTGTGTAT 59.874 36.000 0.00 0.00 0.00 2.29
2715 2910 5.685511 GTGTTTCATGTTGGTTGTGTGTATC 59.314 40.000 0.00 0.00 0.00 2.24
2716 2911 5.358160 TGTTTCATGTTGGTTGTGTGTATCA 59.642 36.000 0.00 0.00 0.00 2.15
2717 2912 6.040278 TGTTTCATGTTGGTTGTGTGTATCAT 59.960 34.615 0.00 0.00 0.00 2.45
2718 2913 7.229506 TGTTTCATGTTGGTTGTGTGTATCATA 59.770 33.333 0.00 0.00 0.00 2.15
2719 2914 6.983474 TCATGTTGGTTGTGTGTATCATAG 57.017 37.500 0.00 0.00 0.00 2.23
2720 2915 6.472016 TCATGTTGGTTGTGTGTATCATAGT 58.528 36.000 0.00 0.00 0.00 2.12
2721 2916 6.939730 TCATGTTGGTTGTGTGTATCATAGTT 59.060 34.615 0.00 0.00 0.00 2.24
2722 2917 8.097662 TCATGTTGGTTGTGTGTATCATAGTTA 58.902 33.333 0.00 0.00 0.00 2.24
2723 2918 8.892723 CATGTTGGTTGTGTGTATCATAGTTAT 58.107 33.333 0.00 0.00 0.00 1.89
2724 2919 8.262715 TGTTGGTTGTGTGTATCATAGTTATG 57.737 34.615 0.00 0.00 35.04 1.90
2725 2920 6.918892 TGGTTGTGTGTATCATAGTTATGC 57.081 37.500 0.00 0.00 33.76 3.14
2726 2921 6.410540 TGGTTGTGTGTATCATAGTTATGCA 58.589 36.000 0.00 0.00 33.76 3.96
2727 2922 6.538381 TGGTTGTGTGTATCATAGTTATGCAG 59.462 38.462 0.00 0.00 33.76 4.41
2728 2923 6.761242 GGTTGTGTGTATCATAGTTATGCAGA 59.239 38.462 0.00 0.00 33.76 4.26
2729 2924 7.042456 GGTTGTGTGTATCATAGTTATGCAGAG 60.042 40.741 0.00 0.00 33.76 3.35
2730 2925 6.515832 TGTGTGTATCATAGTTATGCAGAGG 58.484 40.000 0.00 0.00 33.76 3.69
2731 2926 5.406780 GTGTGTATCATAGTTATGCAGAGGC 59.593 44.000 0.00 0.00 41.68 4.70
2732 2927 4.932200 GTGTATCATAGTTATGCAGAGGCC 59.068 45.833 0.00 0.00 40.13 5.19
2733 2928 2.820059 TCATAGTTATGCAGAGGCCG 57.180 50.000 0.00 0.00 40.13 6.13
2734 2929 1.344438 TCATAGTTATGCAGAGGCCGG 59.656 52.381 0.00 0.00 40.13 6.13
2735 2930 1.344438 CATAGTTATGCAGAGGCCGGA 59.656 52.381 5.05 0.00 40.13 5.14
2736 2931 1.717032 TAGTTATGCAGAGGCCGGAT 58.283 50.000 5.05 0.00 40.13 4.18
2737 2932 0.107456 AGTTATGCAGAGGCCGGATG 59.893 55.000 5.05 0.00 40.13 3.51
2738 2933 0.179045 GTTATGCAGAGGCCGGATGT 60.179 55.000 5.05 0.00 40.13 3.06
2739 2934 0.179048 TTATGCAGAGGCCGGATGTG 60.179 55.000 5.05 2.10 40.13 3.21
2740 2935 1.337384 TATGCAGAGGCCGGATGTGT 61.337 55.000 5.05 0.00 40.13 3.72
2741 2936 1.337384 ATGCAGAGGCCGGATGTGTA 61.337 55.000 5.05 0.74 40.13 2.90
2742 2937 1.521681 GCAGAGGCCGGATGTGTAC 60.522 63.158 5.05 0.00 0.00 2.90
2743 2938 1.961180 GCAGAGGCCGGATGTGTACT 61.961 60.000 5.05 0.00 0.00 2.73
2744 2939 0.103208 CAGAGGCCGGATGTGTACTC 59.897 60.000 5.05 0.00 0.00 2.59
2745 2940 0.324368 AGAGGCCGGATGTGTACTCA 60.324 55.000 5.05 0.00 0.00 3.41
2746 2941 0.179108 GAGGCCGGATGTGTACTCAC 60.179 60.000 5.05 0.00 44.08 3.51
2747 2942 0.614979 AGGCCGGATGTGTACTCACT 60.615 55.000 5.05 0.00 44.14 3.41
2748 2943 1.108776 GGCCGGATGTGTACTCACTA 58.891 55.000 5.05 0.00 44.14 2.74
2749 2944 1.687123 GGCCGGATGTGTACTCACTAT 59.313 52.381 5.05 0.00 44.14 2.12
2750 2945 2.889045 GGCCGGATGTGTACTCACTATA 59.111 50.000 5.05 0.00 44.14 1.31
2751 2946 3.319972 GGCCGGATGTGTACTCACTATAA 59.680 47.826 5.05 0.00 44.14 0.98
2752 2947 4.021368 GGCCGGATGTGTACTCACTATAAT 60.021 45.833 5.05 0.00 44.14 1.28
2753 2948 5.510861 GGCCGGATGTGTACTCACTATAATT 60.511 44.000 5.05 0.00 44.14 1.40
2754 2949 5.405571 GCCGGATGTGTACTCACTATAATTG 59.594 44.000 5.05 0.00 44.14 2.32
2755 2950 6.513180 CCGGATGTGTACTCACTATAATTGT 58.487 40.000 0.00 0.00 44.14 2.71
2756 2951 7.654568 CCGGATGTGTACTCACTATAATTGTA 58.345 38.462 0.00 0.00 44.14 2.41
2757 2952 7.594015 CCGGATGTGTACTCACTATAATTGTAC 59.406 40.741 0.00 0.00 44.14 2.90
2758 2953 7.594015 CGGATGTGTACTCACTATAATTGTACC 59.406 40.741 0.00 0.00 44.14 3.34
2759 2954 7.594015 GGATGTGTACTCACTATAATTGTACCG 59.406 40.741 0.00 0.00 44.14 4.02
2760 2955 6.267817 TGTGTACTCACTATAATTGTACCGC 58.732 40.000 0.00 0.00 44.14 5.68
2761 2956 6.095860 TGTGTACTCACTATAATTGTACCGCT 59.904 38.462 0.00 0.00 44.14 5.52
2762 2957 6.976925 GTGTACTCACTATAATTGTACCGCTT 59.023 38.462 0.00 0.00 40.98 4.68
2763 2958 6.976349 TGTACTCACTATAATTGTACCGCTTG 59.024 38.462 0.00 0.00 34.37 4.01
2764 2959 6.216801 ACTCACTATAATTGTACCGCTTGA 57.783 37.500 0.00 0.00 0.00 3.02
2765 2960 6.817184 ACTCACTATAATTGTACCGCTTGAT 58.183 36.000 0.00 0.00 0.00 2.57
2766 2961 6.701841 ACTCACTATAATTGTACCGCTTGATG 59.298 38.462 0.00 0.00 0.00 3.07
2767 2962 5.465390 TCACTATAATTGTACCGCTTGATGC 59.535 40.000 0.00 0.00 38.57 3.91
2768 2963 5.466728 CACTATAATTGTACCGCTTGATGCT 59.533 40.000 0.00 0.00 40.11 3.79
2769 2964 6.645003 CACTATAATTGTACCGCTTGATGCTA 59.355 38.462 0.00 0.00 40.11 3.49
2770 2965 6.868864 ACTATAATTGTACCGCTTGATGCTAG 59.131 38.462 0.00 0.00 40.11 3.42
2771 2966 3.819564 ATTGTACCGCTTGATGCTAGA 57.180 42.857 0.00 0.00 40.11 2.43
2772 2967 3.819564 TTGTACCGCTTGATGCTAGAT 57.180 42.857 0.00 0.00 40.11 1.98
2773 2968 3.819564 TGTACCGCTTGATGCTAGATT 57.180 42.857 0.00 0.00 40.11 2.40
2774 2969 4.137116 TGTACCGCTTGATGCTAGATTT 57.863 40.909 0.00 0.00 40.11 2.17
2775 2970 3.871006 TGTACCGCTTGATGCTAGATTTG 59.129 43.478 0.00 0.00 40.11 2.32
2776 2971 2.292267 ACCGCTTGATGCTAGATTTGG 58.708 47.619 0.00 0.00 40.11 3.28
2777 2972 2.092968 ACCGCTTGATGCTAGATTTGGA 60.093 45.455 0.00 0.00 40.11 3.53
2778 2973 2.547211 CCGCTTGATGCTAGATTTGGAG 59.453 50.000 0.00 0.00 40.11 3.86
2779 2974 3.201290 CGCTTGATGCTAGATTTGGAGT 58.799 45.455 0.00 0.00 40.11 3.85
2780 2975 3.247173 CGCTTGATGCTAGATTTGGAGTC 59.753 47.826 0.00 0.00 40.11 3.36
2781 2976 4.194640 GCTTGATGCTAGATTTGGAGTCA 58.805 43.478 0.00 0.00 38.95 3.41
2782 2977 4.637534 GCTTGATGCTAGATTTGGAGTCAA 59.362 41.667 0.00 0.00 38.95 3.18
2783 2978 5.298777 GCTTGATGCTAGATTTGGAGTCAAT 59.701 40.000 0.00 0.00 38.95 2.57
2784 2979 6.484643 GCTTGATGCTAGATTTGGAGTCAATA 59.515 38.462 0.00 0.00 38.95 1.90
2785 2980 7.012704 GCTTGATGCTAGATTTGGAGTCAATAA 59.987 37.037 0.00 0.00 38.95 1.40
2786 2981 8.806429 TTGATGCTAGATTTGGAGTCAATAAA 57.194 30.769 0.00 0.00 32.28 1.40
2787 2982 8.806429 TGATGCTAGATTTGGAGTCAATAAAA 57.194 30.769 0.00 0.00 32.28 1.52
2788 2983 9.241919 TGATGCTAGATTTGGAGTCAATAAAAA 57.758 29.630 0.00 0.00 32.28 1.94
2882 3077 1.134946 CATTCCATGCGGTTTCCCTTC 59.865 52.381 0.00 0.00 0.00 3.46
2898 3093 0.593128 CTTCCTGTGTGCGAAAAGGG 59.407 55.000 0.00 0.00 0.00 3.95
2937 3132 4.647424 AGTGTTTTTGATGGCTCGAAAA 57.353 36.364 7.56 7.56 40.76 2.29
2962 3157 4.041567 TGTCTCTGAACCTGCTTATTCCAA 59.958 41.667 0.00 0.00 0.00 3.53
2969 3164 7.833682 TCTGAACCTGCTTATTCCAAATGATTA 59.166 33.333 0.00 0.00 0.00 1.75
3004 3199 8.439971 AGCCATCTGAAATAACCACTATTATCA 58.560 33.333 0.00 0.00 29.59 2.15
3029 3224 6.114221 TGGTTTTTGTTTGAAGACGTCTAG 57.886 37.500 20.39 0.00 0.00 2.43
3068 3263 5.707242 TCGAAAGAGTGAGTCACAACTAT 57.293 39.130 24.73 3.73 36.74 2.12
3095 3290 6.667370 CATGTAACAATGATAATTAGGCGCA 58.333 36.000 10.83 0.00 0.00 6.09
3096 3291 6.299023 TGTAACAATGATAATTAGGCGCAG 57.701 37.500 10.83 0.00 0.00 5.18
3138 3333 6.199393 GCTTTTGTTTGAAGACGTCTACAAT 58.801 36.000 24.71 9.50 34.02 2.71
3146 3341 9.831054 GTTTGAAGACGTCTACAATAATTATCG 57.169 33.333 20.39 0.00 0.00 2.92
3147 3342 9.791820 TTTGAAGACGTCTACAATAATTATCGA 57.208 29.630 20.39 5.47 0.00 3.59
3148 3343 9.447040 TTGAAGACGTCTACAATAATTATCGAG 57.553 33.333 20.39 3.02 0.00 4.04
3149 3344 8.618677 TGAAGACGTCTACAATAATTATCGAGT 58.381 33.333 20.39 0.00 0.00 4.18
3177 3372 9.988350 AATAGCATAAAACTATCACTTTTCGTG 57.012 29.630 0.00 0.00 45.18 4.35
3178 3373 6.314784 AGCATAAAACTATCACTTTTCGTGC 58.685 36.000 0.00 0.00 43.46 5.34
3179 3374 6.149474 AGCATAAAACTATCACTTTTCGTGCT 59.851 34.615 9.10 9.10 43.46 4.40
3180 3375 7.333423 AGCATAAAACTATCACTTTTCGTGCTA 59.667 33.333 11.58 0.00 43.46 3.49
3181 3376 7.636359 GCATAAAACTATCACTTTTCGTGCTAG 59.364 37.037 0.00 0.00 44.18 3.42
3182 3377 6.481954 AAAACTATCACTTTTCGTGCTAGG 57.518 37.500 7.57 0.00 43.36 3.02
3183 3378 4.124851 ACTATCACTTTTCGTGCTAGGG 57.875 45.455 7.57 0.00 43.36 3.53
3184 3379 3.514309 ACTATCACTTTTCGTGCTAGGGT 59.486 43.478 7.57 0.00 43.36 4.34
3185 3380 2.922740 TCACTTTTCGTGCTAGGGTT 57.077 45.000 0.00 0.00 43.46 4.11
3186 3381 3.202829 TCACTTTTCGTGCTAGGGTTT 57.797 42.857 0.00 0.00 43.46 3.27
3187 3382 3.135994 TCACTTTTCGTGCTAGGGTTTC 58.864 45.455 0.00 0.00 43.46 2.78
3188 3383 2.875933 CACTTTTCGTGCTAGGGTTTCA 59.124 45.455 0.00 0.00 36.72 2.69
3189 3384 3.314080 CACTTTTCGTGCTAGGGTTTCAA 59.686 43.478 0.00 0.00 36.72 2.69
3190 3385 3.949113 ACTTTTCGTGCTAGGGTTTCAAA 59.051 39.130 0.00 0.00 0.00 2.69
3191 3386 4.399934 ACTTTTCGTGCTAGGGTTTCAAAA 59.600 37.500 0.00 0.00 0.00 2.44
3192 3387 4.985538 TTTCGTGCTAGGGTTTCAAAAA 57.014 36.364 0.00 0.00 0.00 1.94
3225 3420 6.774354 TTTTTGTTCGTGACTGATACCTAC 57.226 37.500 0.00 0.00 0.00 3.18
3226 3421 4.445452 TTGTTCGTGACTGATACCTACC 57.555 45.455 0.00 0.00 0.00 3.18
3227 3422 3.423749 TGTTCGTGACTGATACCTACCA 58.576 45.455 0.00 0.00 0.00 3.25
3228 3423 3.192001 TGTTCGTGACTGATACCTACCAC 59.808 47.826 0.00 0.00 0.00 4.16
3229 3424 3.361281 TCGTGACTGATACCTACCACT 57.639 47.619 0.00 0.00 0.00 4.00
3230 3425 3.693807 TCGTGACTGATACCTACCACTT 58.306 45.455 0.00 0.00 0.00 3.16
3231 3426 4.084287 TCGTGACTGATACCTACCACTTT 58.916 43.478 0.00 0.00 0.00 2.66
3232 3427 4.525487 TCGTGACTGATACCTACCACTTTT 59.475 41.667 0.00 0.00 0.00 2.27
3233 3428 4.863131 CGTGACTGATACCTACCACTTTTC 59.137 45.833 0.00 0.00 0.00 2.29
3234 3429 5.336531 CGTGACTGATACCTACCACTTTTCT 60.337 44.000 0.00 0.00 0.00 2.52
3235 3430 6.100668 GTGACTGATACCTACCACTTTTCTC 58.899 44.000 0.00 0.00 0.00 2.87
3236 3431 5.105877 TGACTGATACCTACCACTTTTCTCG 60.106 44.000 0.00 0.00 0.00 4.04
3237 3432 4.771054 ACTGATACCTACCACTTTTCTCGT 59.229 41.667 0.00 0.00 0.00 4.18
3238 3433 5.068234 TGATACCTACCACTTTTCTCGTG 57.932 43.478 0.00 0.00 0.00 4.35
3242 3437 4.800554 CCACTTTTCTCGTGGGCT 57.199 55.556 1.34 0.00 46.38 5.19
3243 3438 2.247790 CCACTTTTCTCGTGGGCTG 58.752 57.895 1.34 0.00 46.38 4.85
3244 3439 0.535102 CCACTTTTCTCGTGGGCTGT 60.535 55.000 1.34 0.00 46.38 4.40
3245 3440 0.868406 CACTTTTCTCGTGGGCTGTC 59.132 55.000 0.00 0.00 0.00 3.51
3246 3441 0.759346 ACTTTTCTCGTGGGCTGTCT 59.241 50.000 0.00 0.00 0.00 3.41
3247 3442 1.270358 ACTTTTCTCGTGGGCTGTCTC 60.270 52.381 0.00 0.00 0.00 3.36
3248 3443 0.756294 TTTTCTCGTGGGCTGTCTCA 59.244 50.000 0.00 0.00 0.00 3.27
3249 3444 0.756294 TTTCTCGTGGGCTGTCTCAA 59.244 50.000 0.00 0.00 0.00 3.02
3250 3445 0.756294 TTCTCGTGGGCTGTCTCAAA 59.244 50.000 0.00 0.00 0.00 2.69
3251 3446 0.756294 TCTCGTGGGCTGTCTCAAAA 59.244 50.000 0.00 0.00 0.00 2.44
3252 3447 1.140052 TCTCGTGGGCTGTCTCAAAAA 59.860 47.619 0.00 0.00 0.00 1.94
3266 3461 4.236724 AAAAACCCAAATCGCGCG 57.763 50.000 26.76 26.76 0.00 6.86
3267 3462 1.360911 AAAAACCCAAATCGCGCGT 59.639 47.368 30.98 14.63 0.00 6.01
3268 3463 0.249114 AAAAACCCAAATCGCGCGTT 60.249 45.000 30.98 19.95 0.00 4.84
3269 3464 0.937231 AAAACCCAAATCGCGCGTTG 60.937 50.000 30.98 25.85 0.00 4.10
3270 3465 3.889831 AACCCAAATCGCGCGTTGC 62.890 57.895 30.98 0.00 41.47 4.17
3271 3466 4.101790 CCCAAATCGCGCGTTGCT 62.102 61.111 30.98 9.82 43.27 3.91
3272 3467 2.745785 CCCAAATCGCGCGTTGCTA 61.746 57.895 30.98 10.69 43.27 3.49
3273 3468 1.296867 CCAAATCGCGCGTTGCTAG 60.297 57.895 30.98 15.25 43.27 3.42
3274 3469 1.929714 CAAATCGCGCGTTGCTAGC 60.930 57.895 30.98 8.10 43.27 3.42
3284 3479 1.974000 GCGTTGCTAGCGTTTTAAACC 59.026 47.619 10.77 0.00 0.00 3.27
3285 3480 2.227556 CGTTGCTAGCGTTTTAAACCG 58.772 47.619 10.77 0.15 0.00 4.44
3286 3481 2.348779 CGTTGCTAGCGTTTTAAACCGT 60.349 45.455 10.77 0.00 0.00 4.83
3287 3482 3.620761 GTTGCTAGCGTTTTAAACCGTT 58.379 40.909 10.77 3.39 0.00 4.44
3288 3483 3.967203 TGCTAGCGTTTTAAACCGTTT 57.033 38.095 10.77 1.40 0.00 3.60
3289 3484 4.290104 TGCTAGCGTTTTAAACCGTTTT 57.710 36.364 10.77 0.00 0.00 2.43
3290 3485 4.281264 TGCTAGCGTTTTAAACCGTTTTC 58.719 39.130 10.77 0.00 0.00 2.29
3291 3486 4.035441 TGCTAGCGTTTTAAACCGTTTTCT 59.965 37.500 10.77 0.00 0.00 2.52
3292 3487 4.377738 GCTAGCGTTTTAAACCGTTTTCTG 59.622 41.667 7.01 0.00 0.00 3.02
3293 3488 4.619437 AGCGTTTTAAACCGTTTTCTGA 57.381 36.364 7.01 0.00 0.00 3.27
3294 3489 4.345288 AGCGTTTTAAACCGTTTTCTGAC 58.655 39.130 7.01 0.00 0.00 3.51
3295 3490 3.176287 GCGTTTTAAACCGTTTTCTGACG 59.824 43.478 7.01 9.04 42.43 4.35
3301 3496 3.545911 CGTTTTCTGACGGTCCGG 58.454 61.111 17.28 0.00 39.27 5.14
3302 3497 2.025418 CGTTTTCTGACGGTCCGGG 61.025 63.158 17.28 5.54 39.27 5.73
3303 3498 2.031465 TTTTCTGACGGTCCGGGC 59.969 61.111 17.28 0.00 0.00 6.13
3304 3499 3.540367 TTTTCTGACGGTCCGGGCC 62.540 63.158 17.58 17.58 0.00 5.80
3324 3519 2.047844 CCTGTCAGGCCACGTCAG 60.048 66.667 5.79 8.97 0.00 3.51
3325 3520 2.740055 CTGTCAGGCCACGTCAGC 60.740 66.667 5.01 0.00 0.00 4.26
3326 3521 4.662961 TGTCAGGCCACGTCAGCG 62.663 66.667 5.01 0.00 44.93 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.870221 ACCGCGATAAGTAATTTGGAAC 57.130 40.909 8.23 0.00 0.00 3.62
1 2 5.883503 AAACCGCGATAAGTAATTTGGAA 57.116 34.783 8.23 0.00 0.00 3.53
2 3 5.883503 AAAACCGCGATAAGTAATTTGGA 57.116 34.783 8.23 0.00 0.00 3.53
3 4 6.778108 ACTAAAACCGCGATAAGTAATTTGG 58.222 36.000 8.23 0.12 0.00 3.28
4 5 7.958567 TGAACTAAAACCGCGATAAGTAATTTG 59.041 33.333 8.23 0.21 0.00 2.32
5 6 8.031848 TGAACTAAAACCGCGATAAGTAATTT 57.968 30.769 8.23 0.00 0.00 1.82
6 7 7.599630 TGAACTAAAACCGCGATAAGTAATT 57.400 32.000 8.23 0.00 0.00 1.40
7 8 7.599630 TTGAACTAAAACCGCGATAAGTAAT 57.400 32.000 8.23 0.00 0.00 1.89
8 9 7.418840 TTTGAACTAAAACCGCGATAAGTAA 57.581 32.000 8.23 0.00 0.00 2.24
9 10 7.599630 ATTTGAACTAAAACCGCGATAAGTA 57.400 32.000 8.23 0.00 0.00 2.24
10 11 5.927954 TTTGAACTAAAACCGCGATAAGT 57.072 34.783 8.23 0.13 0.00 2.24
11 12 7.535940 TCAAATTTGAACTAAAACCGCGATAAG 59.464 33.333 18.45 0.00 33.55 1.73
12 13 7.361127 TCAAATTTGAACTAAAACCGCGATAA 58.639 30.769 18.45 0.00 33.55 1.75
13 14 6.900189 TCAAATTTGAACTAAAACCGCGATA 58.100 32.000 18.45 0.00 33.55 2.92
14 15 5.764131 TCAAATTTGAACTAAAACCGCGAT 58.236 33.333 18.45 0.00 33.55 4.58
15 16 5.171147 TCAAATTTGAACTAAAACCGCGA 57.829 34.783 18.45 0.00 33.55 5.87
16 17 5.874892 TTCAAATTTGAACTAAAACCGCG 57.125 34.783 26.01 0.00 41.88 6.46
27 28 9.658799 TTGTCATGGTTTTAGTTCAAATTTGAA 57.341 25.926 26.01 26.01 44.31 2.69
28 29 9.311916 CTTGTCATGGTTTTAGTTCAAATTTGA 57.688 29.630 16.91 16.91 34.92 2.69
29 30 9.097257 ACTTGTCATGGTTTTAGTTCAAATTTG 57.903 29.630 12.15 12.15 0.00 2.32
35 36 9.743057 CAAATTACTTGTCATGGTTTTAGTTCA 57.257 29.630 0.00 0.00 0.00 3.18
36 37 9.191995 CCAAATTACTTGTCATGGTTTTAGTTC 57.808 33.333 0.00 0.00 32.65 3.01
37 38 8.919145 TCCAAATTACTTGTCATGGTTTTAGTT 58.081 29.630 0.00 0.00 32.65 2.24
38 39 8.472007 TCCAAATTACTTGTCATGGTTTTAGT 57.528 30.769 0.00 0.00 32.65 2.24
39 40 9.927668 ATTCCAAATTACTTGTCATGGTTTTAG 57.072 29.630 0.00 0.00 32.65 1.85
40 41 9.703892 CATTCCAAATTACTTGTCATGGTTTTA 57.296 29.630 0.00 0.00 32.65 1.52
41 42 7.661027 CCATTCCAAATTACTTGTCATGGTTTT 59.339 33.333 0.00 0.00 37.65 2.43
42 43 7.016072 TCCATTCCAAATTACTTGTCATGGTTT 59.984 33.333 0.00 0.00 40.51 3.27
43 44 6.496565 TCCATTCCAAATTACTTGTCATGGTT 59.503 34.615 0.00 0.00 40.51 3.67
44 45 6.015918 TCCATTCCAAATTACTTGTCATGGT 58.984 36.000 0.00 0.00 40.51 3.55
45 46 6.406177 CCTCCATTCCAAATTACTTGTCATGG 60.406 42.308 0.00 0.00 40.76 3.66
46 47 6.406177 CCCTCCATTCCAAATTACTTGTCATG 60.406 42.308 0.00 0.00 32.65 3.07
47 48 5.658190 CCCTCCATTCCAAATTACTTGTCAT 59.342 40.000 0.00 0.00 32.65 3.06
48 49 5.016173 CCCTCCATTCCAAATTACTTGTCA 58.984 41.667 0.00 0.00 32.65 3.58
49 50 5.261216 TCCCTCCATTCCAAATTACTTGTC 58.739 41.667 0.00 0.00 32.65 3.18
50 51 5.222337 ACTCCCTCCATTCCAAATTACTTGT 60.222 40.000 0.00 0.00 32.65 3.16
51 52 5.264395 ACTCCCTCCATTCCAAATTACTTG 58.736 41.667 0.00 0.00 34.52 3.16
52 53 5.536497 ACTCCCTCCATTCCAAATTACTT 57.464 39.130 0.00 0.00 0.00 2.24
53 54 5.731678 ACTACTCCCTCCATTCCAAATTACT 59.268 40.000 0.00 0.00 0.00 2.24
54 55 6.002653 ACTACTCCCTCCATTCCAAATTAC 57.997 41.667 0.00 0.00 0.00 1.89
55 56 6.353602 GGAACTACTCCCTCCATTCCAAATTA 60.354 42.308 0.00 0.00 38.44 1.40
56 57 5.510430 GAACTACTCCCTCCATTCCAAATT 58.490 41.667 0.00 0.00 0.00 1.82
57 58 4.079730 GGAACTACTCCCTCCATTCCAAAT 60.080 45.833 0.00 0.00 38.44 2.32
58 59 3.265995 GGAACTACTCCCTCCATTCCAAA 59.734 47.826 0.00 0.00 38.44 3.28
59 60 2.844348 GGAACTACTCCCTCCATTCCAA 59.156 50.000 0.00 0.00 38.44 3.53
60 61 2.045885 AGGAACTACTCCCTCCATTCCA 59.954 50.000 3.82 0.00 46.81 3.53
61 62 2.765502 AGGAACTACTCCCTCCATTCC 58.234 52.381 0.00 0.00 46.81 3.01
62 63 3.898741 CCTAGGAACTACTCCCTCCATTC 59.101 52.174 1.05 0.00 46.81 2.67
63 64 3.275228 ACCTAGGAACTACTCCCTCCATT 59.725 47.826 17.98 0.00 46.81 3.16
64 65 2.866454 ACCTAGGAACTACTCCCTCCAT 59.134 50.000 17.98 0.00 46.81 3.41
65 66 2.295143 ACCTAGGAACTACTCCCTCCA 58.705 52.381 17.98 0.00 46.81 3.86
66 67 3.401589 AACCTAGGAACTACTCCCTCC 57.598 52.381 17.98 0.00 46.81 4.30
67 68 5.128033 ACTAACCTAGGAACTACTCCCTC 57.872 47.826 17.98 0.00 46.81 4.30
68 69 5.549229 AACTAACCTAGGAACTACTCCCT 57.451 43.478 17.98 0.00 46.81 4.20
69 70 6.617782 AAAACTAACCTAGGAACTACTCCC 57.382 41.667 17.98 0.00 46.81 4.30
94 95 5.584649 GCATCTGCCTATGTACTGTGTTAAA 59.415 40.000 0.00 0.00 34.31 1.52
110 111 1.728971 GCGTATGTATGAGCATCTGCC 59.271 52.381 0.00 0.00 43.38 4.85
118 119 5.519722 TGAGTGTATGTGCGTATGTATGAG 58.480 41.667 0.00 0.00 0.00 2.90
140 141 2.222796 CGTGTGTGCGTTCATAAGGATG 60.223 50.000 0.00 0.00 0.00 3.51
144 145 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
157 158 1.092348 TAGCGATAGAGTGTGCGTGT 58.908 50.000 0.00 0.00 39.76 4.49
167 168 2.163509 GGAGGTGCTCATAGCGATAGA 58.836 52.381 0.00 0.00 46.26 1.98
172 173 1.007964 CTCGGAGGTGCTCATAGCG 60.008 63.158 0.00 0.00 46.26 4.26
173 174 0.313672 CTCTCGGAGGTGCTCATAGC 59.686 60.000 4.96 0.00 42.82 2.97
181 182 0.103937 GGCTCAATCTCTCGGAGGTG 59.896 60.000 4.96 0.00 0.00 4.00
184 185 1.361993 CCGGCTCAATCTCTCGGAG 59.638 63.158 0.00 0.00 42.94 4.63
186 187 2.279784 GCCGGCTCAATCTCTCGG 60.280 66.667 22.15 0.00 43.13 4.63
208 209 4.753233 ACGACTTCATCAATCTCAAGAGG 58.247 43.478 0.00 0.00 0.00 3.69
209 210 4.498681 CGACGACTTCATCAATCTCAAGAG 59.501 45.833 0.00 0.00 0.00 2.85
211 212 3.000277 GCGACGACTTCATCAATCTCAAG 60.000 47.826 0.00 0.00 0.00 3.02
218 219 2.539688 GCATATGCGACGACTTCATCAA 59.460 45.455 12.82 0.00 0.00 2.57
232 233 3.194861 TGTCAACTACGAAGGCATATGC 58.805 45.455 19.79 19.79 41.14 3.14
237 238 3.676172 CGTTTATGTCAACTACGAAGGCA 59.324 43.478 0.00 0.00 34.36 4.75
239 240 5.159209 AGACGTTTATGTCAACTACGAAGG 58.841 41.667 9.91 0.00 41.41 3.46
240 241 5.285607 GGAGACGTTTATGTCAACTACGAAG 59.714 44.000 9.91 0.00 41.41 3.79
243 244 4.730657 AGGAGACGTTTATGTCAACTACG 58.269 43.478 5.01 0.00 41.41 3.51
249 250 2.232941 GTGGGAGGAGACGTTTATGTCA 59.767 50.000 5.01 0.00 41.41 3.58
255 256 1.420430 TTGAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
282 283 0.469331 CCTGACCTACCTATCCGGCA 60.469 60.000 0.00 0.00 35.61 5.69
290 291 3.848978 AACTCCTAACCTGACCTACCT 57.151 47.619 0.00 0.00 0.00 3.08
350 351 2.050442 GACCAGGCCAAAAACGCG 60.050 61.111 5.01 3.53 0.00 6.01
472 473 8.746052 TCTTCATATCCGGAAATAACAACATT 57.254 30.769 9.01 0.00 0.00 2.71
473 474 8.621286 GTTCTTCATATCCGGAAATAACAACAT 58.379 33.333 9.01 0.00 0.00 2.71
475 476 7.123830 CGTTCTTCATATCCGGAAATAACAAC 58.876 38.462 9.01 5.83 0.00 3.32
500 501 0.381801 CAAATGGCCGTGGCTCATAC 59.618 55.000 11.25 0.00 41.60 2.39
556 639 4.259850 GCGCCAATTAGAGAACTTTCTACG 60.260 45.833 0.00 0.00 37.73 3.51
557 640 4.630069 TGCGCCAATTAGAGAACTTTCTAC 59.370 41.667 4.18 0.00 37.73 2.59
558 641 4.827692 TGCGCCAATTAGAGAACTTTCTA 58.172 39.130 4.18 0.00 37.73 2.10
559 642 3.674997 TGCGCCAATTAGAGAACTTTCT 58.325 40.909 4.18 0.00 41.00 2.52
570 653 1.723608 CGGCCAAGATGCGCCAATTA 61.724 55.000 4.18 0.00 46.04 1.40
667 750 2.746904 TGGAATAGTGGTGCATTTCGTG 59.253 45.455 0.00 0.00 0.00 4.35
690 773 3.005472 TCCACTCAGTCAAACTAACTCCG 59.995 47.826 0.00 0.00 0.00 4.63
760 843 1.611977 GATCACCATGGTCCATGCATG 59.388 52.381 24.42 22.30 40.20 4.06
761 844 1.497716 AGATCACCATGGTCCATGCAT 59.502 47.619 24.42 15.54 40.20 3.96
762 845 0.921166 AGATCACCATGGTCCATGCA 59.079 50.000 24.42 11.73 40.20 3.96
763 846 2.498167 GTAGATCACCATGGTCCATGC 58.502 52.381 24.42 11.60 40.20 4.06
857 965 1.710996 TTTCCTGGTCCGGCTTTGGA 61.711 55.000 0.00 0.00 35.04 3.53
896 1011 6.392671 GATCAGAATCAGATCGGAGTCCCG 62.393 54.167 17.72 10.80 43.18 5.14
897 1012 2.311463 TCAGAATCAGATCGGAGTCCC 58.689 52.381 17.72 0.00 32.56 4.46
898 1013 4.173036 GATCAGAATCAGATCGGAGTCC 57.827 50.000 17.72 0.00 32.56 3.85
905 1020 9.363763 TCTTTTATATGCGATCAGAATCAGATC 57.636 33.333 5.67 5.67 38.77 2.75
906 1021 9.149225 GTCTTTTATATGCGATCAGAATCAGAT 57.851 33.333 0.00 0.00 31.76 2.90
907 1022 7.600375 GGTCTTTTATATGCGATCAGAATCAGA 59.400 37.037 0.00 0.00 31.76 3.27
908 1023 7.148507 GGGTCTTTTATATGCGATCAGAATCAG 60.149 40.741 0.00 0.00 31.76 2.90
909 1024 6.650807 GGGTCTTTTATATGCGATCAGAATCA 59.349 38.462 0.00 0.00 31.76 2.57
910 1025 6.183360 CGGGTCTTTTATATGCGATCAGAATC 60.183 42.308 0.00 0.00 0.00 2.52
911 1026 5.639506 CGGGTCTTTTATATGCGATCAGAAT 59.360 40.000 0.00 0.00 0.00 2.40
912 1027 4.988540 CGGGTCTTTTATATGCGATCAGAA 59.011 41.667 0.00 0.00 0.00 3.02
957 1078 1.335496 GTGTGTTGCGTTGGGTACAAT 59.665 47.619 0.00 0.00 39.13 2.71
958 1079 0.733729 GTGTGTTGCGTTGGGTACAA 59.266 50.000 0.00 0.00 0.00 2.41
969 1090 1.518903 GGAAGCCTGAGGTGTGTTGC 61.519 60.000 0.00 0.00 0.00 4.17
1172 1293 1.032014 GTTGTTGCAGGTGACATGGT 58.968 50.000 0.00 0.00 0.00 3.55
1247 1377 9.748708 CAATGAAACTAATTTGGACTTTCAGAA 57.251 29.630 9.01 0.00 35.04 3.02
1251 1381 9.626045 CCTACAATGAAACTAATTTGGACTTTC 57.374 33.333 0.00 0.00 0.00 2.62
1254 1384 8.934023 TTCCTACAATGAAACTAATTTGGACT 57.066 30.769 0.00 0.00 0.00 3.85
1272 1406 3.165875 AGCAGAGCAGTAACTTCCTACA 58.834 45.455 0.00 0.00 0.00 2.74
1386 1536 5.671329 GCGAGGAAGAACACACAATTATGAC 60.671 44.000 0.00 0.00 0.00 3.06
1557 1716 6.257423 CCTATGAAGATGAGAAGATCGATCG 58.743 44.000 19.33 9.36 0.00 3.69
1709 1868 0.032952 TTACAGGAAACGCAGCGTCT 59.967 50.000 23.22 7.40 39.99 4.18
1736 1895 1.022982 TCATCTGAAAGCGCTGCAGG 61.023 55.000 29.27 19.26 0.00 4.85
1758 1918 5.412594 GGAGACAACAGACATTTTAGCATGA 59.587 40.000 0.00 0.00 0.00 3.07
1759 1919 5.181811 TGGAGACAACAGACATTTTAGCATG 59.818 40.000 0.00 0.00 37.44 4.06
1771 1931 6.071672 TGTTTTCAACAATTGGAGACAACAGA 60.072 34.615 20.63 7.92 44.95 3.41
1774 1938 6.959671 TTGTTTTCAACAATTGGAGACAAC 57.040 33.333 17.45 17.45 45.18 3.32
1788 1952 8.912988 AGATAGACACCAAGAAATTGTTTTCAA 58.087 29.630 1.74 0.00 43.09 2.69
1801 1965 2.158986 CCTCCTGCAGATAGACACCAAG 60.159 54.545 17.39 0.00 0.00 3.61
1849 2013 2.125431 CCCAACGACGCCGGTATT 60.125 61.111 1.90 0.00 40.78 1.89
1875 2039 0.327591 CTCCAAGGCCTGAAGCTTCT 59.672 55.000 26.09 3.57 43.05 2.85
1885 2049 2.142292 TTTCCTGGAGCTCCAAGGCC 62.142 60.000 34.30 8.52 46.97 5.19
1888 2052 2.276732 TGTTTTCCTGGAGCTCCAAG 57.723 50.000 34.30 28.84 46.97 3.61
1897 2061 0.169672 CGCTCAGCATGTTTTCCTGG 59.830 55.000 0.00 0.00 37.40 4.45
1903 2067 2.956987 GTGCCGCTCAGCATGTTT 59.043 55.556 0.00 0.00 46.24 2.83
1936 2100 1.618837 CCGACAAGAACAAGGGAGAGA 59.381 52.381 0.00 0.00 0.00 3.10
1942 2106 0.396811 AGTCCCCGACAAGAACAAGG 59.603 55.000 0.00 0.00 34.60 3.61
1969 2133 2.729467 CGCACTACTCAGTACTCACAGC 60.729 54.545 0.00 0.00 32.21 4.40
1979 2143 2.869801 TGAAACAAACCGCACTACTCAG 59.130 45.455 0.00 0.00 0.00 3.35
2086 2264 1.600916 GCCGGCCAGACTGTTCTTT 60.601 57.895 18.11 0.00 0.00 2.52
2226 2420 6.984740 TTCTTGTTAGCACAAATTAAAGCG 57.015 33.333 0.00 0.00 42.53 4.68
2404 2599 2.503920 CCGGACACTTAACGGGATAG 57.496 55.000 0.00 0.00 43.69 2.08
2417 2612 5.566469 AGAAATGGAGTTAAATTCCGGACA 58.434 37.500 1.83 0.00 37.54 4.02
2422 2617 9.892130 TTCTCTCTAGAAATGGAGTTAAATTCC 57.108 33.333 6.62 1.19 38.81 3.01
2455 2650 4.436986 GCATTCAACTACCTTACGCCTTTC 60.437 45.833 0.00 0.00 0.00 2.62
2461 2656 3.994392 ACAGTGCATTCAACTACCTTACG 59.006 43.478 0.00 0.00 0.00 3.18
2463 2658 7.390823 TGATTACAGTGCATTCAACTACCTTA 58.609 34.615 0.00 0.00 0.00 2.69
2480 2675 8.683550 TTATTACGAAGTCACACTGATTACAG 57.316 34.615 0.00 0.00 45.38 2.74
2536 2731 0.878416 TGCCAAACCGATAACACTGC 59.122 50.000 0.00 0.00 0.00 4.40
2547 2742 5.938125 ACGGTAGATATGAATATGCCAAACC 59.062 40.000 0.00 0.00 0.00 3.27
2569 2764 1.806511 ACAACGATCGACGACATACG 58.193 50.000 24.34 6.85 45.77 3.06
2570 2765 4.088923 TGAAAACAACGATCGACGACATAC 59.911 41.667 24.34 7.24 45.77 2.39
2571 2766 4.228317 TGAAAACAACGATCGACGACATA 58.772 39.130 24.34 0.00 45.77 2.29
2572 2767 3.054166 TGAAAACAACGATCGACGACAT 58.946 40.909 24.34 3.39 45.77 3.06
2573 2768 2.461903 TGAAAACAACGATCGACGACA 58.538 42.857 24.34 9.21 45.77 4.35
2574 2769 3.646303 GATGAAAACAACGATCGACGAC 58.354 45.455 24.34 6.76 45.77 4.34
2575 2770 2.340283 CGATGAAAACAACGATCGACGA 59.660 45.455 24.34 0.00 45.77 4.20
2577 2772 2.092211 AGCGATGAAAACAACGATCGAC 59.908 45.455 24.34 4.53 40.06 4.20
2578 2773 2.333926 AGCGATGAAAACAACGATCGA 58.666 42.857 24.34 0.00 40.06 3.59
2579 2774 2.787723 AGCGATGAAAACAACGATCG 57.212 45.000 14.88 14.88 40.50 3.69
2580 2775 3.534516 CGAAAGCGATGAAAACAACGATC 59.465 43.478 0.00 0.00 40.82 3.69
2581 2776 3.479006 CGAAAGCGATGAAAACAACGAT 58.521 40.909 0.00 0.00 40.82 3.73
2582 2777 2.349060 CCGAAAGCGATGAAAACAACGA 60.349 45.455 0.00 0.00 40.82 3.85
2583 2778 1.969256 CCGAAAGCGATGAAAACAACG 59.031 47.619 0.00 0.00 40.82 4.10
2584 2779 2.287368 ACCCGAAAGCGATGAAAACAAC 60.287 45.455 0.00 0.00 40.82 3.32
2585 2780 1.950909 ACCCGAAAGCGATGAAAACAA 59.049 42.857 0.00 0.00 40.82 2.83
2586 2781 1.600023 ACCCGAAAGCGATGAAAACA 58.400 45.000 0.00 0.00 40.82 2.83
2587 2782 2.699251 AACCCGAAAGCGATGAAAAC 57.301 45.000 0.00 0.00 40.82 2.43
2588 2783 3.719173 AAAACCCGAAAGCGATGAAAA 57.281 38.095 0.00 0.00 40.82 2.29
2589 2784 5.379732 AATAAAACCCGAAAGCGATGAAA 57.620 34.783 0.00 0.00 40.82 2.69
2590 2785 5.379732 AAATAAAACCCGAAAGCGATGAA 57.620 34.783 0.00 0.00 40.82 2.57
2591 2786 5.379732 AAAATAAAACCCGAAAGCGATGA 57.620 34.783 0.00 0.00 40.82 2.92
2592 2787 7.749539 ATAAAAATAAAACCCGAAAGCGATG 57.250 32.000 0.00 0.00 40.82 3.84
2593 2788 8.766000 AAATAAAAATAAAACCCGAAAGCGAT 57.234 26.923 0.00 0.00 40.82 4.58
2594 2789 8.590719 AAAATAAAAATAAAACCCGAAAGCGA 57.409 26.923 0.00 0.00 40.82 4.93
2626 2821 3.511934 AGAATGAAGCTATACCTAGGCGG 59.488 47.826 9.30 0.00 39.35 6.13
2627 2822 4.792521 AGAATGAAGCTATACCTAGGCG 57.207 45.455 9.30 0.00 0.00 5.52
2628 2823 6.102897 TCAAGAATGAAGCTATACCTAGGC 57.897 41.667 9.30 0.00 30.99 3.93
2643 2838 7.672738 GCAAATAGCAAAGTCATTCAAGAATG 58.327 34.615 14.98 14.98 44.98 2.67
2644 2839 7.823149 GCAAATAGCAAAGTCATTCAAGAAT 57.177 32.000 0.00 0.00 44.79 2.40
2660 2855 2.154462 AGTATCATGCCGGCAAATAGC 58.846 47.619 36.33 22.76 44.65 2.97
2661 2856 4.036734 ACAAAGTATCATGCCGGCAAATAG 59.963 41.667 36.33 22.88 0.00 1.73
2662 2857 3.951037 ACAAAGTATCATGCCGGCAAATA 59.049 39.130 36.33 28.62 0.00 1.40
2663 2858 2.760092 ACAAAGTATCATGCCGGCAAAT 59.240 40.909 36.33 29.70 0.00 2.32
2664 2859 2.094803 CACAAAGTATCATGCCGGCAAA 60.095 45.455 36.33 25.21 0.00 3.68
2665 2860 1.472082 CACAAAGTATCATGCCGGCAA 59.528 47.619 36.33 19.92 0.00 4.52
2666 2861 1.093972 CACAAAGTATCATGCCGGCA 58.906 50.000 34.80 34.80 0.00 5.69
2667 2862 1.094785 ACACAAAGTATCATGCCGGC 58.905 50.000 22.73 22.73 0.00 6.13
2668 2863 1.202177 GCACACAAAGTATCATGCCGG 60.202 52.381 0.00 0.00 0.00 6.13
2669 2864 1.529622 CGCACACAAAGTATCATGCCG 60.530 52.381 0.00 0.00 0.00 5.69
2670 2865 1.468520 ACGCACACAAAGTATCATGCC 59.531 47.619 0.00 0.00 0.00 4.40
2671 2866 2.095768 ACACGCACACAAAGTATCATGC 60.096 45.455 0.00 0.00 0.00 4.06
2672 2867 3.058983 ACACACGCACACAAAGTATCATG 60.059 43.478 0.00 0.00 0.00 3.07
2673 2868 3.138304 ACACACGCACACAAAGTATCAT 58.862 40.909 0.00 0.00 0.00 2.45
2674 2869 2.556257 ACACACGCACACAAAGTATCA 58.444 42.857 0.00 0.00 0.00 2.15
2675 2870 3.602390 AACACACGCACACAAAGTATC 57.398 42.857 0.00 0.00 0.00 2.24
2676 2871 3.375610 TGAAACACACGCACACAAAGTAT 59.624 39.130 0.00 0.00 0.00 2.12
2677 2872 2.742589 TGAAACACACGCACACAAAGTA 59.257 40.909 0.00 0.00 0.00 2.24
2678 2873 1.537638 TGAAACACACGCACACAAAGT 59.462 42.857 0.00 0.00 0.00 2.66
2679 2874 2.254918 TGAAACACACGCACACAAAG 57.745 45.000 0.00 0.00 0.00 2.77
2680 2875 2.095008 ACATGAAACACACGCACACAAA 60.095 40.909 0.00 0.00 0.00 2.83
2681 2876 1.470494 ACATGAAACACACGCACACAA 59.530 42.857 0.00 0.00 0.00 3.33
2682 2877 1.090728 ACATGAAACACACGCACACA 58.909 45.000 0.00 0.00 0.00 3.72
2683 2878 1.845568 CAACATGAAACACACGCACAC 59.154 47.619 0.00 0.00 0.00 3.82
2684 2879 1.202234 CCAACATGAAACACACGCACA 60.202 47.619 0.00 0.00 0.00 4.57
2685 2880 1.202245 ACCAACATGAAACACACGCAC 60.202 47.619 0.00 0.00 0.00 5.34
2686 2881 1.098869 ACCAACATGAAACACACGCA 58.901 45.000 0.00 0.00 0.00 5.24
2687 2882 1.851666 CAACCAACATGAAACACACGC 59.148 47.619 0.00 0.00 0.00 5.34
2688 2883 2.851235 CACAACCAACATGAAACACACG 59.149 45.455 0.00 0.00 0.00 4.49
2689 2884 3.611986 CACACAACCAACATGAAACACAC 59.388 43.478 0.00 0.00 0.00 3.82
2690 2885 3.256879 ACACACAACCAACATGAAACACA 59.743 39.130 0.00 0.00 0.00 3.72
2691 2886 3.843999 ACACACAACCAACATGAAACAC 58.156 40.909 0.00 0.00 0.00 3.32
2692 2887 5.358160 TGATACACACAACCAACATGAAACA 59.642 36.000 0.00 0.00 0.00 2.83
2693 2888 5.826586 TGATACACACAACCAACATGAAAC 58.173 37.500 0.00 0.00 0.00 2.78
2694 2889 6.647334 ATGATACACACAACCAACATGAAA 57.353 33.333 0.00 0.00 0.00 2.69
2695 2890 6.939730 ACTATGATACACACAACCAACATGAA 59.060 34.615 0.00 0.00 0.00 2.57
2696 2891 6.472016 ACTATGATACACACAACCAACATGA 58.528 36.000 0.00 0.00 0.00 3.07
2697 2892 6.741992 ACTATGATACACACAACCAACATG 57.258 37.500 0.00 0.00 0.00 3.21
2698 2893 8.892723 CATAACTATGATACACACAACCAACAT 58.107 33.333 0.00 0.00 35.75 2.71
2699 2894 7.148323 GCATAACTATGATACACACAACCAACA 60.148 37.037 0.77 0.00 35.75 3.33
2700 2895 7.148323 TGCATAACTATGATACACACAACCAAC 60.148 37.037 0.77 0.00 35.75 3.77
2701 2896 6.881602 TGCATAACTATGATACACACAACCAA 59.118 34.615 0.77 0.00 35.75 3.67
2702 2897 6.410540 TGCATAACTATGATACACACAACCA 58.589 36.000 0.77 0.00 35.75 3.67
2703 2898 6.761242 TCTGCATAACTATGATACACACAACC 59.239 38.462 0.77 0.00 35.75 3.77
2704 2899 7.042456 CCTCTGCATAACTATGATACACACAAC 60.042 40.741 0.77 0.00 35.75 3.32
2705 2900 6.986231 CCTCTGCATAACTATGATACACACAA 59.014 38.462 0.77 0.00 35.75 3.33
2706 2901 6.515832 CCTCTGCATAACTATGATACACACA 58.484 40.000 0.77 0.00 35.75 3.72
2707 2902 5.406780 GCCTCTGCATAACTATGATACACAC 59.593 44.000 0.77 0.00 35.75 3.82
2708 2903 5.511373 GGCCTCTGCATAACTATGATACACA 60.511 44.000 0.00 0.00 40.13 3.72
2709 2904 4.932200 GGCCTCTGCATAACTATGATACAC 59.068 45.833 0.00 0.00 40.13 2.90
2710 2905 4.321974 CGGCCTCTGCATAACTATGATACA 60.322 45.833 0.00 0.00 40.13 2.29
2711 2906 4.177026 CGGCCTCTGCATAACTATGATAC 58.823 47.826 0.00 0.00 40.13 2.24
2712 2907 3.195610 CCGGCCTCTGCATAACTATGATA 59.804 47.826 0.00 0.00 40.13 2.15
2713 2908 2.027745 CCGGCCTCTGCATAACTATGAT 60.028 50.000 0.00 0.00 40.13 2.45
2714 2909 1.344438 CCGGCCTCTGCATAACTATGA 59.656 52.381 0.00 0.00 40.13 2.15
2715 2910 1.344438 TCCGGCCTCTGCATAACTATG 59.656 52.381 0.00 0.00 40.13 2.23
2716 2911 1.717032 TCCGGCCTCTGCATAACTAT 58.283 50.000 0.00 0.00 40.13 2.12
2717 2912 1.344438 CATCCGGCCTCTGCATAACTA 59.656 52.381 0.00 0.00 40.13 2.24
2718 2913 0.107456 CATCCGGCCTCTGCATAACT 59.893 55.000 0.00 0.00 40.13 2.24
2719 2914 0.179045 ACATCCGGCCTCTGCATAAC 60.179 55.000 0.00 0.00 40.13 1.89
2720 2915 0.179048 CACATCCGGCCTCTGCATAA 60.179 55.000 0.00 0.00 40.13 1.90
2721 2916 1.337384 ACACATCCGGCCTCTGCATA 61.337 55.000 0.00 0.00 40.13 3.14
2722 2917 1.337384 TACACATCCGGCCTCTGCAT 61.337 55.000 0.00 0.00 40.13 3.96
2723 2918 1.987306 TACACATCCGGCCTCTGCA 60.987 57.895 0.00 0.00 40.13 4.41
2724 2919 1.521681 GTACACATCCGGCCTCTGC 60.522 63.158 0.00 0.00 0.00 4.26
2725 2920 0.103208 GAGTACACATCCGGCCTCTG 59.897 60.000 0.00 0.00 0.00 3.35
2726 2921 0.324368 TGAGTACACATCCGGCCTCT 60.324 55.000 0.00 0.00 0.00 3.69
2727 2922 0.179108 GTGAGTACACATCCGGCCTC 60.179 60.000 0.00 0.00 45.32 4.70
2728 2923 1.898154 GTGAGTACACATCCGGCCT 59.102 57.895 0.00 0.00 45.32 5.19
2729 2924 4.515404 GTGAGTACACATCCGGCC 57.485 61.111 0.00 0.00 45.32 6.13
2737 2932 6.501781 AGCGGTACAATTATAGTGAGTACAC 58.498 40.000 0.00 0.00 46.24 2.90
2738 2933 6.704289 AGCGGTACAATTATAGTGAGTACA 57.296 37.500 0.00 0.00 37.40 2.90
2739 2934 7.198390 TCAAGCGGTACAATTATAGTGAGTAC 58.802 38.462 0.00 0.00 35.51 2.73
2740 2935 7.337480 TCAAGCGGTACAATTATAGTGAGTA 57.663 36.000 0.00 0.00 0.00 2.59
2741 2936 6.216801 TCAAGCGGTACAATTATAGTGAGT 57.783 37.500 0.00 0.00 0.00 3.41
2742 2937 6.346919 GCATCAAGCGGTACAATTATAGTGAG 60.347 42.308 0.00 0.00 0.00 3.51
2743 2938 5.465390 GCATCAAGCGGTACAATTATAGTGA 59.535 40.000 0.00 0.00 0.00 3.41
2744 2939 5.679906 GCATCAAGCGGTACAATTATAGTG 58.320 41.667 0.00 0.00 0.00 2.74
2745 2940 5.924475 GCATCAAGCGGTACAATTATAGT 57.076 39.130 0.00 0.00 0.00 2.12
2758 2953 7.892196 ATTGACTCCAAATCTAGCATCAAGCG 61.892 42.308 0.00 0.00 41.43 4.68
2759 2954 4.194640 TGACTCCAAATCTAGCATCAAGC 58.805 43.478 0.00 0.00 46.19 4.01
2760 2955 6.939132 ATTGACTCCAAATCTAGCATCAAG 57.061 37.500 0.00 0.00 35.67 3.02
2761 2956 8.806429 TTTATTGACTCCAAATCTAGCATCAA 57.194 30.769 0.00 0.00 35.67 2.57
2762 2957 8.806429 TTTTATTGACTCCAAATCTAGCATCA 57.194 30.769 0.00 0.00 35.67 3.07
2803 2998 6.209026 ACTCTCCCTCTCCTGAGATATTTTT 58.791 40.000 0.00 0.00 42.73 1.94
2804 2999 5.787327 ACTCTCCCTCTCCTGAGATATTTT 58.213 41.667 0.00 0.00 42.73 1.82
2805 3000 5.417170 ACTCTCCCTCTCCTGAGATATTT 57.583 43.478 0.00 0.00 42.73 1.40
2806 3001 6.734918 ATACTCTCCCTCTCCTGAGATATT 57.265 41.667 0.00 0.00 42.73 1.28
2807 3002 7.203361 TCTATACTCTCCCTCTCCTGAGATAT 58.797 42.308 0.00 0.00 42.73 1.63
2808 3003 6.576360 TCTATACTCTCCCTCTCCTGAGATA 58.424 44.000 0.00 0.00 42.73 1.98
2809 3004 5.420455 TCTATACTCTCCCTCTCCTGAGAT 58.580 45.833 0.00 0.00 42.73 2.75
2810 3005 4.833672 TCTATACTCTCCCTCTCCTGAGA 58.166 47.826 0.00 0.00 42.73 3.27
2811 3006 5.576563 TTCTATACTCTCCCTCTCCTGAG 57.423 47.826 0.00 0.00 39.92 3.35
2812 3007 5.399267 GGTTTCTATACTCTCCCTCTCCTGA 60.399 48.000 0.00 0.00 0.00 3.86
2813 3008 4.830600 GGTTTCTATACTCTCCCTCTCCTG 59.169 50.000 0.00 0.00 0.00 3.86
2814 3009 4.140876 GGGTTTCTATACTCTCCCTCTCCT 60.141 50.000 0.00 0.00 32.89 3.69
2815 3010 4.140876 AGGGTTTCTATACTCTCCCTCTCC 60.141 50.000 0.00 0.00 40.96 3.71
2816 3011 5.069518 AGGGTTTCTATACTCTCCCTCTC 57.930 47.826 0.00 0.00 40.96 3.20
2817 3012 5.043281 TCAAGGGTTTCTATACTCTCCCTCT 60.043 44.000 0.00 0.00 43.62 3.69
2818 3013 5.069383 GTCAAGGGTTTCTATACTCTCCCTC 59.931 48.000 0.00 0.00 43.62 4.30
2819 3014 4.963628 GTCAAGGGTTTCTATACTCTCCCT 59.036 45.833 0.00 0.00 45.96 4.20
2820 3015 4.715297 TGTCAAGGGTTTCTATACTCTCCC 59.285 45.833 0.00 0.00 35.56 4.30
2882 3077 1.856265 GCTCCCTTTTCGCACACAGG 61.856 60.000 0.00 0.00 0.00 4.00
2898 3093 2.292569 CACTAATGGCCATCACATGCTC 59.707 50.000 21.08 0.00 0.00 4.26
2937 3132 5.189180 GGAATAAGCAGGTTCAGAGACAAT 58.811 41.667 0.00 0.00 0.00 2.71
2962 3157 7.971201 TCAGATGGCTCTAAGTCATAATCATT 58.029 34.615 0.00 0.00 41.28 2.57
2969 3164 6.995091 GGTTATTTCAGATGGCTCTAAGTCAT 59.005 38.462 0.00 0.00 44.40 3.06
3004 3199 5.961272 AGACGTCTTCAAACAAAAACCATT 58.039 33.333 13.58 0.00 0.00 3.16
3059 3254 5.942826 TCATTGTTACATGCCATAGTTGTGA 59.057 36.000 0.00 0.00 0.00 3.58
3067 3262 7.575532 CGCCTAATTATCATTGTTACATGCCAT 60.576 37.037 0.00 0.00 0.00 4.40
3068 3263 6.293900 CGCCTAATTATCATTGTTACATGCCA 60.294 38.462 0.00 0.00 0.00 4.92
3168 3363 3.202829 TGAAACCCTAGCACGAAAAGT 57.797 42.857 0.00 0.00 0.00 2.66
3169 3364 4.561735 TTTGAAACCCTAGCACGAAAAG 57.438 40.909 0.00 0.00 0.00 2.27
3170 3365 4.985538 TTTTGAAACCCTAGCACGAAAA 57.014 36.364 0.00 0.00 0.00 2.29
3171 3366 4.985538 TTTTTGAAACCCTAGCACGAAA 57.014 36.364 0.00 0.00 0.00 3.46
3202 3397 5.697633 GGTAGGTATCAGTCACGAACAAAAA 59.302 40.000 0.00 0.00 0.00 1.94
3203 3398 5.221481 TGGTAGGTATCAGTCACGAACAAAA 60.221 40.000 0.00 0.00 0.00 2.44
3204 3399 4.281435 TGGTAGGTATCAGTCACGAACAAA 59.719 41.667 0.00 0.00 0.00 2.83
3205 3400 3.827876 TGGTAGGTATCAGTCACGAACAA 59.172 43.478 0.00 0.00 0.00 2.83
3206 3401 3.192001 GTGGTAGGTATCAGTCACGAACA 59.808 47.826 0.00 0.00 0.00 3.18
3207 3402 3.442977 AGTGGTAGGTATCAGTCACGAAC 59.557 47.826 0.00 0.00 0.00 3.95
3208 3403 3.693807 AGTGGTAGGTATCAGTCACGAA 58.306 45.455 0.00 0.00 0.00 3.85
3209 3404 3.361281 AGTGGTAGGTATCAGTCACGA 57.639 47.619 0.00 0.00 0.00 4.35
3210 3405 4.451629 AAAGTGGTAGGTATCAGTCACG 57.548 45.455 0.00 0.00 0.00 4.35
3211 3406 6.038997 AGAAAAGTGGTAGGTATCAGTCAC 57.961 41.667 0.00 0.00 0.00 3.67
3212 3407 5.105877 CGAGAAAAGTGGTAGGTATCAGTCA 60.106 44.000 0.00 0.00 0.00 3.41
3213 3408 5.105837 ACGAGAAAAGTGGTAGGTATCAGTC 60.106 44.000 0.00 0.00 0.00 3.51
3214 3409 4.771054 ACGAGAAAAGTGGTAGGTATCAGT 59.229 41.667 0.00 0.00 0.00 3.41
3215 3410 5.103000 CACGAGAAAAGTGGTAGGTATCAG 58.897 45.833 0.00 0.00 36.06 2.90
3216 3411 5.068234 CACGAGAAAAGTGGTAGGTATCA 57.932 43.478 0.00 0.00 36.06 2.15
3226 3421 0.868406 GACAGCCCACGAGAAAAGTG 59.132 55.000 0.00 0.00 39.19 3.16
3227 3422 0.759346 AGACAGCCCACGAGAAAAGT 59.241 50.000 0.00 0.00 0.00 2.66
3228 3423 1.270305 TGAGACAGCCCACGAGAAAAG 60.270 52.381 0.00 0.00 0.00 2.27
3229 3424 0.756294 TGAGACAGCCCACGAGAAAA 59.244 50.000 0.00 0.00 0.00 2.29
3230 3425 0.756294 TTGAGACAGCCCACGAGAAA 59.244 50.000 0.00 0.00 0.00 2.52
3231 3426 0.756294 TTTGAGACAGCCCACGAGAA 59.244 50.000 0.00 0.00 0.00 2.87
3232 3427 0.756294 TTTTGAGACAGCCCACGAGA 59.244 50.000 0.00 0.00 0.00 4.04
3233 3428 1.593196 TTTTTGAGACAGCCCACGAG 58.407 50.000 0.00 0.00 0.00 4.18
3234 3429 3.790691 TTTTTGAGACAGCCCACGA 57.209 47.368 0.00 0.00 0.00 4.35
3249 3444 0.249114 AACGCGCGATTTGGGTTTTT 60.249 45.000 39.36 13.43 39.14 1.94
3250 3445 0.937231 CAACGCGCGATTTGGGTTTT 60.937 50.000 39.36 14.28 40.05 2.43
3251 3446 1.371145 CAACGCGCGATTTGGGTTT 60.371 52.632 39.36 15.12 40.05 3.27
3252 3447 2.254051 CAACGCGCGATTTGGGTT 59.746 55.556 39.36 15.98 42.39 4.11
3253 3448 4.398598 GCAACGCGCGATTTGGGT 62.399 61.111 39.36 9.38 0.00 4.51
3264 3459 1.974000 GGTTTAAAACGCTAGCAACGC 59.026 47.619 16.45 1.54 0.00 4.84
3265 3460 2.227556 CGGTTTAAAACGCTAGCAACG 58.772 47.619 13.44 3.55 0.00 4.10
3266 3461 3.257745 ACGGTTTAAAACGCTAGCAAC 57.742 42.857 24.87 10.01 0.00 4.17
3267 3462 3.967203 AACGGTTTAAAACGCTAGCAA 57.033 38.095 24.87 0.00 0.00 3.91
3268 3463 3.967203 AAACGGTTTAAAACGCTAGCA 57.033 38.095 24.87 0.00 0.00 3.49
3269 3464 4.377738 CAGAAAACGGTTTAAAACGCTAGC 59.622 41.667 24.87 12.42 0.00 3.42
3270 3465 5.618395 GTCAGAAAACGGTTTAAAACGCTAG 59.382 40.000 24.87 9.65 0.00 3.42
3271 3466 5.500825 GTCAGAAAACGGTTTAAAACGCTA 58.499 37.500 24.87 0.00 0.00 4.26
3272 3467 4.345288 GTCAGAAAACGGTTTAAAACGCT 58.655 39.130 24.87 10.92 0.00 5.07
3273 3468 3.176287 CGTCAGAAAACGGTTTAAAACGC 59.824 43.478 24.87 9.09 38.96 4.84
3274 3469 4.899579 CGTCAGAAAACGGTTTAAAACG 57.100 40.909 23.48 23.48 38.96 3.60
3284 3479 2.025418 CCCGGACCGTCAGAAAACG 61.025 63.158 13.94 0.00 42.24 3.60
3285 3480 2.322830 GCCCGGACCGTCAGAAAAC 61.323 63.158 13.94 0.00 0.00 2.43
3286 3481 2.031465 GCCCGGACCGTCAGAAAA 59.969 61.111 13.94 0.00 0.00 2.29
3287 3482 4.011517 GGCCCGGACCGTCAGAAA 62.012 66.667 13.94 0.00 0.00 2.52
3307 3502 2.047844 CTGACGTGGCCTGACAGG 60.048 66.667 17.83 17.83 38.80 4.00
3308 3503 2.740055 GCTGACGTGGCCTGACAG 60.740 66.667 18.37 18.37 33.26 3.51
3309 3504 4.662961 CGCTGACGTGGCCTGACA 62.663 66.667 3.32 2.21 33.53 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.