>input_sequence_54253
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ATGGCGGCTTTGACCGGGGCAGCGCTCCTCCTCGCCAGCCTCCTTGCTCTCGCAGCCATCACCAGCGGCAACACCGAAGG
TGACATCCTCTACTCGCAAAGGCAGGCGTGGAAGGACCCCAACAACGTGCTGCAGAGCTGGGATCCGACGCTTGTCAACC
CCTGCACTTGGTACCATGTCACCTGCAACAA---------CGTTAACTCCGTCATCCGAGTGTATGCCGCTTCTCTTTTC
TCCTCCCTGCTCTGAATTCTGAAA----GTCCAAATTAGTTTCATTGTAGGAAGTTACTGCTCTGCTTGTCTGCAGTATG
CACGATTATTTTAAACGTTCAG--AAGACCTTTTTA-CTTGGACC-------------TTTTCTACTCTCTCCGCAGAAT
ATATAATTAAGAGGAGTCATA---ATTGTGTGTTCTTCCTCGCTGTGCAGGGACTTGGGGAATGCAGGCCTCTCAGGCGC
CCTGGTTCCTGGACTGGGACGAATGGTGAACCTTCAGTACCTGTAAGTAC----TACTGCAGCTTGCTGCA--GAGTGCA
GCCCTGTCAAGTTACACTCAAAATTTCCTGCATAACGATCGATCTTCTCATCTTCATAGGGAGCTGTTTGGGAACAACAT
CAGTGGACCGATTCCAGCAACCCTCGGCAACCTGACACGCCTGGTCAGCCTTGATCTCTATGACAACCGTCTCACCGGCG
CGATACCAGCCTCGCTCGGGAACATCGAGACGCTGCGTTTCCTGTAAGAATCTTCCTGCAGCGC-TTTCAGATGACGTCA
TGCTAAAATGTCT----GTTGTCTCCAATTGTTGAAAACAATTTCTTGGTGTCTATCTGCAGGAGGCTGCATGGGAACAA
GCTTGCAGGTGGAATACCGGCGTCGTTGGGCCGTCTGAAGAAGCTTCAGGCCTTGGAGCTCCAGGAAAACATGCTGAGCG
GCACGGTGCCGCGGGAGGTTCTCTCCCTTGTTCTTGTCGGGGACTTGACTGAGCTGTGAGTACTGAGTAGTGCGGTTTGT
TTCACA---CCA------GAAATTGCATCCGCATTCTTCCTTCCTTCGG----CCAGTGACTTCCACTTACAACATTTTT
TATCTTCA-TGCAGTAACGTTGCAAAGAACAGTCTGGCCGGCACTGTCAAATCTTCTAAACCAAGAGGTAGGGATGCATA
TATTT-------------GTGATCTGCAGCTCTTGACGGATTAAGTT---CTGCAGTTCTTTTTTTTTCTGTGTGTGTAC
AATACATGTATAGGTTTGGCGCTTTAATTTGTGCTAACAAGAATTTTCCAATTGACAACATTTGCAGTAGCTACTGTCAT
CCAGGACACGCTCAAGACTACACGTCTACACGCTGAGCAGCACTGA----------------------------------
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>chr3D_1_TraesCS3D01G473200
GTTCCAAATTACTTATCGCGGTTTTAGTTCAAATTTGAACTAAAACCATGACAAGTAATTTGGAATGGAGGGAGTAGTTC
CTAGGTTAGTTTTTTTTAACACAGTACATAGGCAGATGCTCATACATACGCACATACACTCATCCTTATGAACGCACACA
CGCACACTCTATCGCTATGAGCACCTCCGAGAGATTGAGCCGGCATATCCTCTTGAGATTGATGAAGTCGTCGCATATGC
CTTCGTAGTTGACATAAACGTCTCCTCCCACTCAATGCAGATTGCCGGATAGGTAGGTCAGGTTAGGAGTTTTTTTTACT
CCAGACCCTAGTTTAATTGTAAACTCTATGCGCGTTTTTGGCCTGGTCACGTGTCACTTAAACAACCTTGGAGCGCTGAA
ACAATCTCCCTACTGTTTCTTGAAACTTGTCTCTTCTAAGCTTCCCAATATATAGTTAGTTGGAGTACCAAAAATGTTGT
TATTTCCGGATATGAAGAACGTATGAGCCACGGCCATTTGCAACAAAATTGTTCACTAC---------------------
-------------------------------------------------------------GTCCCAAAAATCATGTACG
TAGAAAGTTCTCTAATTGGCGCATCTTGGCCGGCCTGCCTGCTGGCCGCATGAATTGGTTGGTGGATGGTGTAGACTGTA
GACCTGCTCCTGGCCACTGGATAGTCGCACACGAAATGCACCACTATTCCACCGGAGTTAGTTTGACTGAGTGGAATAGC
GGGAGACCGATTGCGAAATAAATTATCTCGAGCGGAGGCTCCCATGCATGGACCATGGT---------------------
----GATCTACGATTCTTCCACAGATTCAGCCGGTCTTCACCAGCTGAACTTTCGTTGGTCAAAATTAGGACGAGAGGAG
AAAATCCAAAGCCGGACCA-------GGAAAGTTCAAAGCTTCGGCCGGGCGGGACTCCGATCTGATTCTGAT------C
GCATATAAAAGACCCGTCCCTCCGCTACCATTCTTCCATTGTACCCAACGCAACACACCTCAGGCTTCCTTCTTCCAGCA
ATGGCGGCTTTGACCGGGGCAGCGCTCCTCCTCGCCAGCCTCCTTGCTCTCGCAGCCATCACCAGCGGCAACACCGAAGG
TGACATCCTCTACTCGCAAAGGCAGGCGTGGAAGGACCCCAACAACGTGCTGCAGAGCTGGGATCCGACGCTTGTCAACC
CCTGCACTTGGTACCATGTCACCTGCAACAA---------CGTTAACTCCGTCATCCGAGTGTATGCCGCTTCTCTTTTC
TCCTCCCTGCTCTGAATTCTGAAA----GTCCAAATTAGTTTCATTGTAGGAAGTTACTGCTCTGCTTGTCTGCAGTATG
CACGATTATTTTAAACGTTCAG--AAGACCTTTTTA-CTTGGACC-------------TTTTCTACTCTCTCCGCAGAAT
ATATAATTAAGAGGAGTCATA---ATTGTGTGTTCTTCCTCGCTGTGCAGGGACTTGGGGAATGCAGGCCTCTCAGGCGC
CCTGGTTCCTGGACTGGGACGAATGGTGAACCTTCAGTACCTGTAAGTAC----TACTGCAGCTTGCTGCA--GAGTGCA
GCCCTGTCAAGTTACACTCAAAATTTCCTGCATAACGATCGATCTTCTCATCTTCATAGGGAGCTGTTTGGGAACAACAT
CAGTGGACCGATTCCAGCAACCCTCGGCAACCTGACACGCCTGGTCAGCCTTGATCTCTATGACAACCGTCTCACCGGCG
CGATACCAGCCTCGCTCGGGAACATCGAGACGCTGCGTTTCCTGTAAGAATCTTCCTGCAGCGC-TTTCAGATGACGTCA
TGCTAAAATGTCT----GTTGTCTCCAATTGTTGAAAACAATTTCTTGGTGTCTATCTGCAGGAGGCTGCATGGGAACAA
GCTTGCAGGTGGAATACCGGCGTCGTTGGGCCGTCTGAAGAAGCTTCAGGCCTTGGAGCTCCAGGAAAACATGCTGAGCG
GCACGGTGCCGCGGGAGGTTCTCTCCCTTGTTCTTGTCGGGGACTTGACTGAGCTGTGAGTACTGAGTAGTGCGGTTTGT
TTCACA---CCA------GAAATTGCATCCGCATTCTTCCTTCCTTCGG----CCAGTGACTTCCACTTACAACATTTTT
TATCTTCA-TGCAGTAACGTTGCAAAGAACAGTCTGGCCGGCACTGTCAAATCTTCTAAACCAAGAGGTAGGGATGCATA
TATTT-------------GTGATCTGCAGCTCTTGACGGATTAAGTT---CTGCAGTTCTTTTTTTTTCTGTGTGTGTAC
AATACATGTATAGGTTTGGCGCTTTAATTTGTGCTAACAAGAATTTTCCAATTGACAACATTTGCAGTAGCTACTGTCAT
CCAGGACACGCTCAAGACTACACGTCTACACGCTGAGCAGCACTGACAACCTGAACTTTTGTAAGAATAAACTGAATGTT
TTTT-CCTTCTGAAACTGCTGGGAGAGGCTGTAGCCTTCTATCCCGTTAAGTGTCCGGAATTTAACTCCATTTCTAGAGA
GAAAAAGGGGAAAGGCGTAAGGTAGTTGAATGCACTGTAATCAGTGTGACTTCGTAATAATGAATCTTTCTCTGCACCTT
TAGTGCATATGCAGTGTTATCGGTTTGGCATATTCATATCTACCGTATGTCGTCGATCGTTGTTTTCATCGCTTTCGGGT
TTTATTTTTATTTTTTTCTACCGCCTAGGTATAGCTTCATTCTTGAATGACTTTGCTATTTGCCGGCATGATACTTTGTG
TGCGTGTGTTTCATGTTGGTTGTGTGTATCATAGTTATGCAGAGGCCGGATGTGTACTCACTATAATTGTACCGCTTGAT
GCTAGATTTGGAGTCAATAAAAAACACCCTTTATCGAAAAAATATCTCAGGAGAGGGAGAGTATAGAAACCCTTGACACA
GATGGCTCGGTAACTCCATTCCATGCGGTTTCCCTTCCTGTGTGCGAAAAGGGAGCATGTGATGGCCATTAGTGTTTTTG
ATGGCTCGAAAATTGTCTCTGAACCTGCTTATTCCAAATGATTATGACTTAGAGCCATCTGAAATAACCACTATTATCAA
TGGTTTTTGTTTGAAGACGTCTAGAATAATTATCATTGTATCGAAAGAGTGAGTCACAACTATGGCATGTAACAATGATA
ATTAGGCGCAGCCACGGGCCAAGCATTGGCTTTTGTTTGAAGACGTCTACAATAATTATCGAGTAAATAGCATAAAACTA
TCACTTTTCGTGCTAGGGTTTCAAAAAACCACCACTTTTTTGTTCGTGACTGATACCTACCACTTTTCTCGTGGGCTGTC
TCAAAAAACCCAAATCGCGCGTTGCTAGCGTTTTAAACCGTTTTCTGACGGTCCGGGCCCGCCTGTCAGGCCACGTCAGC
GCCGCGC
>chr3B_75
--------------------------------------------------------------------------TAGTTC
CTATGTTAGTTTTTCTTAACACAGTACATATGCAGATGTTCATACATACGCACATACACTTATCTTTATGAACGCACGCA
CGCACACACTATTCCTATGAGTACATTCGAGAGATTGAGCCGGCATATTTT-TTGAGACTGATGAAGTCGTCACATACGT
TTTTGTAGTCGACATGAACGTCTCCTCCCACTCAATGCAGATCGCCGGATGGCTAGGTTAGGTTAGAAGTTTTTTTTACT
CTAGACCCTAGTTTAAGTGTAAACTCTATGTGCGTTTTTGGCCTGGTCACGTGTCACTTAAACAACCTTGGAGCGCTGAA
ACAAACTT--TACTGTTTCTTGAAACTTCTCTATTCTAAGCTTCCCA--ATATAGTTAGTTGGAGTACCAAATTTTTTGT
TATTTCCGGATATGAAGAACATATGAGCCACGGCCGTTTGCAGCAAAATTGTTCACTACTCCCTCTGTCCCATAATGTAA
GACTTTTTTGACACTACGCTAGTGTCAAAAAACGTCCAATATTATGAGACGGAGGGAGCAGGTCCCAAAAATCATGTA--
--GAAAGTTCTCCAATTGGCGCATCCTGGCCGGCCTGCGTTCTGGCCGCATGAATTGGTTGGTGGATGGTGTAGACTGTA
GACCTGCTCATGGCCACTGGATAGTAGCAGAGGAAATGCACCACTATTCCACTGGAGTTGGTTTGACTGAGTGGAATAGC
GGGAGACCGATTGCGAAATAAATTATCTCGAGCGGAGGCTCC----CATGGAGCATGGTGATTGGTGAACGTACTCTGCA
GGCCGATCTACGATTCTTCCACAGATTCAGCCGGTCTTCACCGGCTGAACTTTCGTTGGTCAAAATTAGGACGAGAGGAG
AAAAGCCAAAGTTGGACCTGGAAAGTGGAAAGTTCAAAGCTTCGGGCGGGACTCCGA----------TCTGAT------C
GCATATAAACTACCCGTCCCTCCGCTACCATTCTT----TGTACCCAACCCAACACACCTTAGGCTCCCTTCTTCCAGCA
ATGGCGGCTCTGACCGGGGCAGCGCTCCTCCTCGCCAGCCTCCTTGCTCTCGCAGCCATCGCCAGCGGCAACACCGAAGG
TGACATACTCTACTCGCAAAGGCAGGTGTGGAAGGACCCCAACAACGTGCTGCAGAGCTGGGATCCCACCCTTGTCAACC
CCTGCACTTGGTTCCATGTCACCTGCAACAACA---------TCAACTCCGTCATCCGAGTGTATGCCGTT---------
----------------------------------------------------ATTAACTAATCTGCTTTTCTGCAGTATG
CACGGTTCATTTTAATGTTTAG--AAGACCTTTTCCACTCAGTCTGCACTAGTCTCGTTGAACTTGAATCTCTGCAGAAA
TT----TTAAGAGGAAGCATA---AT--AGAGTTCTTCCTCGCTGTGCAGGGACTTGGGGAATGCAGGCCTCTCAGGCGC
CCTGGTTCCTGGACTGGGACGAATGGTGAACCTTCAGTACCTGTAAGTAC----TACTGCAGCTTGCTGCAC--TGTACA
GACTTGTCAAGTTACACTCAAAATTTCCTGCATAATGATCAATATTCTCATCTTCATAGGGAGCTGTTTGGGAACAACAT
CAGTGGACCGATTCCAGCAACCCTCGGCAACCTAACACGCCTGGTCAGCCTTGATCTCTACGACAACCGTCTCACGGGCG
CGATACCAGCCTCGCTCGGGAACATCGGGACGCTGCGTTTCCTGTAAGAATCTTGCTGCAGCGC-TTTCGGATGACGAGA
GGTTGAAATGCTT----ATTGTCTCCAACTGCTGAAAACAATCTGTTGGTGTCTATCTGCAGGAGGCTGCATGGGAACAA
GCTTGCAGGTGGTATACCGGCGTCTTTGGGCAATCTGACGAAGCTTCAAACTTTGGAGCTTCAGGAGAACATGCTGACCG
GCACAGTGCCGCTGGAAGTCCTCTCTCTTGTTCTTCTTGGGCACTTGACTGAACTGTGAGTAGTACCTACAGTTTCATTT
CACACA---CCA------GAAATCGCATCCACTTTCCTCCTTCCTTC-----CCCAGTGACTTCCACTTACAGTATTTTT
TATCTTCA-TGCAGTAACGTTGCCAAGAACAGTCTGGCCGGCACTGTTAAATCATCTAAACCAAGAGGTAGGGATGCATA
TTTTT-------------ATGATCTGTAGCTCTTGACGGATTAAGTT---CTCCAGTTATTTATTTATTT--TTGTGTAC
AATACATGTACAGGTTTG----TTTAATTTGTGCTCACAAGAATTTTCCAATTGACATCATTTGCAGTAGCTACCGTCAT
CCAGGACACGCTCAAGACTACACGTTTACACGCTGAGCAGCACTGAAACCTTAAC---TTATAAGAATAAACTGAATGTT
TTTT-CCTTTTGAAACTGCGGGAAGAGGCTGTAGCCTTTTATTCCGTTAAGAGTCCCAAGCTTACATCCATTTCTAGAGA
GAAAAAGGGAAAAGGTGAAAGGTGGTTCAATGCATTGTAATCAGTGCGACTTCGTAATAATGAATCTTTCTCTGCACCTT
TAGTGCATATCCAGTGTTATCCGTTATGTATATTCATATCTCA-------------------------------------
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-------------------------------------------------------GGAGAGTATAGAAACCCTTGACACA
TATGGATCGGTAACTCCATTCCATGTGCTTTCCCTTGCTGTGTGCGAAATGGAAGCATGTGATGGCCATTAGTGTTTTTG
ATGGCTCGAAAGTTGCCTCTGAACCTCCTTATTCCAGATGGTTGCGACTTACAGCCATCTGAGGTAACCACTATTATCGA
TGTATTTTGTTTGACGACATCTACAATAGTTATCATTGTATCGAGATTGTGAGACACAACCCCCGCATGTAACAATGATA
ATTAGGC-------------------------------------------------------------------------
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>chr3A_492
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-----------ATGAAGAATATATGAGCCATGCCCGTTTGCAACAAAATTGTTCACTA----------------------
------------------------------------------------------------GGTCCCAAAAATCATGTA--
--GAAAGTTCTCCAATTGGCGCATCCTGGCCGGCCTGCCTGCTGGCCGCATGAATTGGTTGGTGGATGGTGTAGACTGTA
GACCTGCTCATGGCCACTGGATAGTCGCAAACGAAATGCACCACTATTCCACTGGAGTTAGTTTGACTGAGTGGAATAGC
GGGAGACCGATTGTGAAATAAATTATCTCCAGCGGAGGCTCC----CATGGACCATGG-------TGAACGTACTCTGCA
TGCCGATCTACGATTCTTCCACAGATTCAGCCGGTCTTCACCAGCTGAACTTTCGTTGGTCAAAATCAGGATGAGAGGAG
AAAAGCCAAGGCCGGACCA-------GGAAAGTTCAAAGCTTCGGGCGGGACTCCGA----------TCTGATTCTGAGC
GCATATAAAAGACCCGTCCCTCCGCTACCATTCTTCC------------------CACCTCAGGCTTCCTTCTTCCAGCA
ATGGCGGCTCTGACCGGTGCAGCGCTCCTCCTCGCCAGCCTCCTTGCTCTTGCAGCCATAGCCAGCGGCAACACCGAAGG
TGACATCCTCTACTCGCAAAGGCTGGCGTGGAAGGACCCCAACAACGTGCTGCAGAGCTGGGATCCCACCCTTGTCAACC
CCTGCACTTGGTTCCATGTCACCTGCAACAACGTCAACAACGTCAACTCCGTCATCCGAGTGTATGCCGCTTCTCTTCTC
TCCTCCCTCCCTGC---TCTCAAG----GTCCAAATTAGTTCATGA-TAGGAAGCTACTACTCTGCTTTGCTGCAGTATG
CACGATTCGTTTAAACGTTCAG--AAGACCTTTTTA-CTTGGACC-------------TTTTCTACTCTCTCCGCAGAAT
ATATAATTAAGAGGAATCATA---ATTGT-TGTTCTTCCTCGCTGTGCAGGGACTTGGGGAATGCAGGCCTCTCAGGCGC
CCTGGTTCCTGGACTGGGACGAATGGTGAACCTTCAGTACCTGTAAGTAC----TACTGCAACTTGCTGCAC--AGTACA
GACTTGTCAAGTTACACTCAGAATTTCCTGCATAATGATCGATCTTCTCATCTTCATAGGGAGCTGTTTGGGAACAATAT
CAGTGGACCGATTCCAGCAACCCTCGGCAACCTGACACGCCTGGTCAGCCTTGATCTCTACGACAACCATCTCACCGGCG
CGATACCAGCCTCGCTCGGGAACATCGGGACGCTGCGTTTCCTGTAAGAATCTTGCTGCAGCGC-TTTCGGATGACTAGA
GGTTGAAATGCTT----ATTGTCTCCAACTGCTGAAAACAATCTGTTGGTGTTTATCTGCAGGAGGCTGCACGGGAACAA
GTTTGCAGGTGGTATACCGTCGTCGTTGGGCCGTCTGACGAAGCTTCAAACTTTGGAGCTTCAGGAGAACATGCTGACCG
GCACAGTGCCGCTGGAAGTCCTCTCTCTTGTTCTTCTTGGGGACTTGACTGAACTGTGAGTAGCACATACAGTTTCATTT
AACACACCTCCA------GAAATTGCATCCACTTTCCTCCTTCCTTC-----CCCAGTGACTTCCACTTACAGTATTTTT
TATCTTCA-TGCAGTAACGTTGCCAAGAACAGTCTGGCCGGCACTGTCAAATCATCTAAACCAAGAGGTAGGGATGCATA
TATTT-------------GTGATCTGCAGCTCTTGACGGATTAAGTT---CTCCAGTTCTATATTTTTCTGTGTGTGTAC
AATACATGTATAGGTTTGGTGCTTTAATTTGTGCTAACAAGAATTTTCCAATTGACATCATTTGCAGTAGCTACCGTCAT
CCAGGACACGCTCAAGACTACACGTCTACATGCTGAGCAGCACTGACAACCTGAACTTTTCTAAGAATAAACTGAATGTT
TTTTTCCTTTTGAAACTGCTGGAAGAGGCTGTAGCCTTTTATTCCGTTAAGAGCCCCTAGCTTACATCCATTTCTAGAGA
GAAAAAGGGAAAAGGTGAAAGGTAGTTGAATACATTGTAATCAGTGCAACTTCATAATAATGAATCTTTCTCTGCACCTT
TAGTGCATATCCAGTGTTATCAGTTTGGTATATTTATATCTCA-------------------------------------
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-------------------------------------------------------GGAGAGTATAGAAACCCTTGACACA
GATGGCTCGGAAACACCATTCCATGCAGTTTCCCTTGCTGAGTGCGAAAACGTTGCATGTGATGGCCATTAGTGTTTT-G
ATGGCTCAGAAGTTGTCTCTGAGTATGCTTATTCCAGATAATTGTGACTTGGAGCCATCTGAAATAACCACTATTATCGA
TGGCTTTTGTTTGAAGATGTCCACAATAATTATCATTGTATTGAAAGAGTGAGACACAACTCCGGCTTGT----------
---AGGCGCGACCACGGGCCGAGCATTGGCTTTTGTTTGAAGACGTCTACAACAATTATC--------------------
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>chr3A_1074
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-------------------------------------------------------------------------CCGAAGG
CGACATCCTTTACATGCAAAGGCGGGCGTGGAAGGACCCCAACAATGTAGTGCAGAGCTGGGACCCCACCCTTTTCAACC
CCTGCACTTGGCTCCATGTCACCTGCAACAG---------CGACAACTCTGTCACCCGAGTGTATGT---TTTTCTTTTC
TCTTCCTTGCTCTGAAAGAATAGGGTCGGTCCATGGCAATGGCATGGATGGAAGTTGTTACCACTCCTTTATGCAGTATG
CACAGTTGTTTGCAACATTCAG--AA--ACTTTTAACTTGGGACAAAAACTGCACTCCTCTTGCTGAATCTCTGCAGA--
---TTGATT----GAATCATACTGCT--TGTATTCTTCCTCACTGTGCAGGGATTTGGCGGATGCAGGCATCTCAGGCAC
CCTGATCCCTGAGCTGGGAGGACTGAAGAACCTTCAGTACCTGTAAGTAC----TACTGTGACTTGCTGCAGAGAGTGCA
GACTTGTCAAATTACACCCAAAATTTCCTACGGAAT----GATCTTCCCATCTTCACAGGGAGCTGTTTACGAACAACAT
TAGTGGATCCATACCAACAACCCTCGGCAACCTGACAAGCCTGGTCACCCTTGATCTCTACGACAACCTTCTCACTGGCA
CGATACCGGCCTCGCTTGCCAACATCAGGATGCTGCGTTTTCTGTACGAGTCTTGCTGCAGCAATTTTCAGTTGAAGAGA
TGCTAAAATGC---CTATTTGTCTCCAACTACTTAAAACAA---------------------------------------
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>chr3A_1074
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-------------------------------------------------------------------------CCGAAGG
CGACATCCTTTACTCGCAAAGGCAGGTGTGGAAGGATCCCAACAACGTTCTGACAAGCTGGGATCCGACGCTTGTCAACC
CCTGCACTTGGTTCCATGTCACCTGCAACCT---------CGACAACTCCGTCACCCGAGTGTATGCCACTCCTCTTTTC
ACACATCTGC-----------------------AATTAGTTTCATG--ATAAAGTTACCACTCTGCTTGTCTGCATGCAG
TTTGTACAAAAAAATTCAACATCAAAGAACTTTTAA-TTTGGACAAAAATTGCATCATTCTTCTTGAATCTCTACATAAT
AAATTAACT----AAATCATA---CT--TGTGTTCTTCCTCACTGTACAGGGATTTGGGGAACGCAGGCATCTCAGGCAC
CCTGATTCCTCAACTGGGACAACTGAAGAACCTGCAGTACCTGTAAGAAACTAGT---GCAACTTGCTGC--AGAGTGCA
GACTTGTCAAATTACACTCAGAATTTTCTACAGAAT----GACCTTCTCATGTTCATAGGGAGCTATACGGGAACAATAT
GAGTGGACCAATACCAACGACCCTGGGCAACCTGACACGCCTGGTCAGCCTTGATCTCTACGACAACCATCTCACCGGAG
TGATACCTTCCTCGCTTGGGGCAGTTGGGACACTGCGTTTCTTGTATGAGTCTTTCTGCAATGAATTTCAGTCGACGAGA
TGCTGAAATGCATACTAATTGTCTCCAACTGCTGAAAACAATGTGTTGGTGCCTATCTTCAGGAGGTTGCATGGGAACAA
ACTGGCAGGGAGTATACCGGCGTCGTTGGGCCGTCTGACGAAGCTTGTCAAGCTGGAGCTTCAGGAGAACATGCTGAGCG
GCACGGTGCCGCTGGAGATCCTCTCACTTGTTCTTGTTGGGGACTTGACTGAACTGTGAGTAGTGCGGT------TTTGT
TTCACA---CACCAG-----AATTGCATCCACTTCCTTCCTTTCTTTTCCTTCCCAGTGACTTCCTCTTACAATATTTAT
TTACCTTTGCGTAGGAATGTCGCCAAGAACAATCTTGCCGGCACTGTCATATCATCTAAACCAAGAGGTAGGGATCCATA
TATTT-------------GTAATCTGCAACTCT-GACGGATTAAATTGCCCTGCAGTTG--TATTTTTTTTATGTGT---
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>chr3B_1397
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----------------------------TGTGTTCTTCCTCACTGTGCAGGGATTTAGGGAATGCAGGCATCTCAGGCAC
CCTGATTCCTCAACTGGGAGAGCTGAAGAACCTGCAGTACCTGTAAGTGC----T---GCAACTTGCTGGT-AGAGTGCA
GACTTGTCAAATTACACTCAAACTTTC-TGCAGAAT----GATTTTCTCATTTTCATAGGGAGCTGTACGCGAACAATAT
GAGTGGACCAATACCAACGACCCTGGGCAACCTGACAGCCCTGGTCAGCCTTGATCTCTACGACAACCATCTCACCGGCG
TGATACCTTCCTCGCTTGGGGCAGTTGGGACACTGCGTTTCTTGTATGAGTCTTGCTGCAATGAATTTCAGTCGACGAGA
TTCTGAAATGCATACTAATTGTCTCCAACTGCTGAAAACAATCTGTGGGTGCCTATCTTCAGGAGGTTGCATGGGAACAA
ACTGGCGGGAGTTATACCGGCGTCATTGGGCCGTCTGACGAAGCTTGTCGAGCTGGAGCTTCAGGAGAACATGCTGAGCG
GCACGGTGCCGCTGGAGATCCTCTCGCTTGTTCTTGTCGGGGACTTGACTGAACTGTAAGTAGTGCAGT------TT-GT
TTTACA---CCA------TAAATTGCATCCACTTCTTTCCTTCCTTT-----CCCAGTGGCTTTCACTCACAATATTTTT
TACCTTCG-TGCAGAAATGTTGCGAAAAACAATCTGGCCGGCACTATCAAATCTTCTAAACCAAGAGGTAGGGATGCATA
TATTT-------------GTGATCTC---------------------------CAGTTCTT-------------------
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>chr3B_1397
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----------------------------TGTGCTCTTCCTCACTGTGCAGGGATTTGGGGAACGCAGGCATCTCGGGCAC
CCTGATTCCTCAACTGGGACAACTGAAGAACCTGCAGTACCTGTAAGAAC----TAGTACAACTTGCTGCAGAG--TCCA
GACTTGCCAAATTACAGTCAAAACTTTCTACAAAAT----GATCTTCTCGTGGTCATAGAGAGCTGTACGCGAACAATAT
GAGTGGATCAATACCAACAACTCTGGGCAACCTGACACTCCTGATCAGCCTCGATCTTTACAACAACCATCTCACCGGCG
TGATACCTTCCTCGCTTGGGGCAGTCGGGACACAGCGTTTCCTGTACGAGTCTCTTTGCAACAATTTCCAAATGATGAGA
TGCTGAAATGCCTATTGATTGTCTCCAACTGCTAGAGGCTATTCGTTGGTGTCTCCCTGCAGGAGGCTGCATGGGAACAA
ACTGGCAGGGGGTATACTGGCGTCATTGGGCCGTCTGATGAAGCTTGTCGAGCTGGAGCTTCAGGAGAATACGCTGACCG
GCACGGTGCCGCTGGAGGTCCTATCTCTTGTTCTTGTCGGGGACTTGACTGAACTGTGAGTAGTGCAGT------TT-GT
TTTACA---CCAGAAATAGAAATTGCATCCACTTCTTTCCTTCCTTT-----CCCAGTGGCTTTCACTTACAATATATTT
TTCCATCC-CGCAGAAATGTTGTGCAAAACAATTTGGCTGGCACTGTTAAATCATCTACACAAAGAGGTAGGGATCCATA
TATTACCTGTATTTTTTGGTGATTTGCAACTCT-GACGGATTAAGTTGTTCTGCAGTTG--TATTTTTTG--GTGTGTAT
AATAAATGTATAGGTTTGGTGCTTT-----GTGCTCGCAAGAGTTTTCCAATTGGAATCATTTGCAGTGGCTACTGTCAT
CCAGGACACGCTCAAGACTACACT--------CTGAGCACTAGTGGTAACCTGAACTTATGTAAGAATAAACTAAATGAT
TTTG-CATTCCGAAACTGCT------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
---S----------S---------------S-------S---------------------S---S------------S--
-------S----SS-------S--S-S---------------------SS-S------S-------------S----S-S
S--S-----S-----S--------------------------S-------S-S-----S-------S-------------
-S--------------S-------------S-------------------------------------------------
----S--SSS------------------S---S--------------SS-----------------------SS-S----
--------------------S--------------S--------------------------------------------
------------------------------------------------------------------------------SS
SS----------S------------S------------------------------------------------------
---------S-------------------S----------------------S---------------------------
------------------------------------------SSSS----------------------------------
--------------------------------------------------------------------------------
----S----------------------------------------S----SSSSSSSSSSSSSSSSS-------------
-------------------------------------SS----------S------------------------------
---------S--------------------------------------------------S-------------------
--------------------------------------------------------------------------------
------------S------------------------------S------------------------------------
----------------S---S--S---------------------S-------------S--------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
-S-S-------------------------------S--------------------------------------------
------------------------------------------------------------S-------------------
---------------------------S--------------------------S----------------------SS-
----------S------S----------S--S------------S-----------------------------------
------------S-------------------------S---------S--S--------S-----S-------------
------------S------S-----S--------------------------S---------S--S---SS-SSS-----
------------------------------S-S--------------SS------------------------S------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------S-----------------
-------------------S-------------------------------------S----------------------
--------------------------------------------------------------------------------
----------------------S---------------S---S--------S----SS-SS---SS--------------
---------S-----S-S----------------S-----------S---------------------------------
----------S----------S------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
------------------------------------S---------------S---------------------------
-----------S------------------------S------S----------------------------------S-
---S-------------------S-----------------------------S-------SS-----------------
---------SS---------S-------------------------------S-------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_173
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GCACACA
CGCACACTCTATC-------------------------------------------------------------------
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>reverse_1868
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AGACGCTGCGTTTCCTGTAA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_1293
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GTCAACC
CCTGCACTTGGTA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>reverse_2920
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CAGAGGCCGGATGTGTACTC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
