Multiple sequence alignment - TraesCS3D01G472300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G472300 chr3D 100.000 3298 0 0 1 3298 574243163 574239866 0.000000e+00 6091.0
1 TraesCS3D01G472300 chr3D 93.631 314 12 2 33 346 574292834 574292529 2.320000e-126 462.0
2 TraesCS3D01G472300 chr3D 79.744 390 52 14 2005 2375 574264461 574264080 1.170000e-64 257.0
3 TraesCS3D01G472300 chrUn 92.026 2295 108 20 1 2260 41223949 41226203 0.000000e+00 3155.0
4 TraesCS3D01G472300 chrUn 88.625 967 74 21 2344 3298 41226217 41227159 0.000000e+00 1144.0
5 TraesCS3D01G472300 chrUn 93.132 364 11 5 1 354 380168757 380169116 3.770000e-144 521.0
6 TraesCS3D01G472300 chrUn 93.132 364 11 5 1 354 442634307 442634666 3.770000e-144 521.0
7 TraesCS3D01G472300 chr3A 90.347 1699 109 20 700 2372 709194010 709192341 0.000000e+00 2178.0
8 TraesCS3D01G472300 chr3A 92.365 668 36 9 2639 3298 709192010 709191350 0.000000e+00 937.0
9 TraesCS3D01G472300 chr3A 93.515 586 27 6 1 581 709194589 709194010 0.000000e+00 861.0
10 TraesCS3D01G472300 chr3A 79.115 407 56 12 928 1313 710782449 710782847 1.520000e-63 254.0
11 TraesCS3D01G472300 chr3B 89.920 377 19 11 1 369 764501309 764501674 4.980000e-128 468.0
12 TraesCS3D01G472300 chr3B 77.966 767 138 22 1428 2181 765108680 765109428 5.020000e-123 451.0
13 TraesCS3D01G472300 chr3B 90.663 332 24 3 1 332 764456701 764457025 5.050000e-118 435.0
14 TraesCS3D01G472300 chr3B 84.222 450 47 8 1180 1629 764458314 764458739 1.830000e-112 416.0
15 TraesCS3D01G472300 chr3B 75.605 951 167 37 1441 2360 765085645 765086561 8.520000e-111 411.0
16 TraesCS3D01G472300 chr3B 80.531 452 61 18 1944 2376 764458865 764459308 4.110000e-84 322.0
17 TraesCS3D01G472300 chr3B 80.726 441 56 14 1946 2372 764529049 764529474 1.910000e-82 316.0
18 TraesCS3D01G472300 chr3B 83.226 310 20 15 3 305 764523936 764524220 4.220000e-64 255.0
19 TraesCS3D01G472300 chr3B 85.714 56 8 0 2439 2494 764529536 764529591 3.550000e-05 60.2
20 TraesCS3D01G472300 chr3B 83.929 56 9 0 2439 2494 764459367 764459422 2.000000e-03 54.7
21 TraesCS3D01G472300 chr7A 88.889 99 9 1 2434 2532 661560432 661560336 1.610000e-23 121.0
22 TraesCS3D01G472300 chr2B 87.879 99 10 1 2434 2532 750540218 750540122 7.480000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G472300 chr3D 574239866 574243163 3297 True 6091.000000 6091 100.000000 1 3298 1 chr3D.!!$R1 3297
1 TraesCS3D01G472300 chrUn 41223949 41227159 3210 False 2149.500000 3155 90.325500 1 3298 2 chrUn.!!$F3 3297
2 TraesCS3D01G472300 chr3A 709191350 709194589 3239 True 1325.333333 2178 92.075667 1 3298 3 chr3A.!!$R1 3297
3 TraesCS3D01G472300 chr3B 765108680 765109428 748 False 451.000000 451 77.966000 1428 2181 1 chr3B.!!$F4 753
4 TraesCS3D01G472300 chr3B 765085645 765086561 916 False 411.000000 411 75.605000 1441 2360 1 chr3B.!!$F3 919
5 TraesCS3D01G472300 chr3B 764456701 764459422 2721 False 306.925000 435 84.836250 1 2494 4 chr3B.!!$F5 2493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 835 1.135315 CAAAGAACATGAGCCGCGG 59.865 57.895 24.05 24.05 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2393 3238 0.316204 GCTGCATGTTCAGTTTGCCT 59.684 50.0 0.0 0.0 36.49 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 2.388310 CATGCATGCACCATTGGAAA 57.612 45.000 25.37 0.00 0.00 3.13
154 155 1.330521 TCAGTTGCTTTGACGTCAAGC 59.669 47.619 29.67 29.67 37.15 4.01
191 197 9.485206 GTCTTCTATCACACAAAAGTTAACCTA 57.515 33.333 0.88 0.00 0.00 3.08
221 227 6.765036 AGGATAAGCATTGACTACATCACAAG 59.235 38.462 0.00 0.00 36.92 3.16
476 487 1.166129 GACTCGTGAGCACCTCTACA 58.834 55.000 0.00 0.00 0.00 2.74
591 607 2.809174 CGTCGACAGAATGCGCCA 60.809 61.111 17.16 0.00 42.53 5.69
603 619 4.980903 GCGCCAGCCACGTGTTTG 62.981 66.667 15.65 11.81 37.42 2.93
604 620 3.276091 CGCCAGCCACGTGTTTGA 61.276 61.111 15.65 0.00 0.00 2.69
630 647 1.328374 GCCGCGACCGTTTATAATTGT 59.672 47.619 8.23 0.00 0.00 2.71
631 648 2.539274 GCCGCGACCGTTTATAATTGTA 59.461 45.455 8.23 0.00 0.00 2.41
638 655 6.171006 CGACCGTTTATAATTGTAACGTGTC 58.829 40.000 18.95 18.95 42.10 3.67
641 658 6.128580 ACCGTTTATAATTGTAACGTGTCACC 60.129 38.462 15.53 0.00 42.10 4.02
673 690 3.858868 TTGTCAGTGAGCCGCGACC 62.859 63.158 8.23 0.00 0.00 4.79
707 724 1.603842 CTGGTCTATGCCTGCCACA 59.396 57.895 0.00 0.00 0.00 4.17
713 730 1.491754 TCTATGCCTGCCACATGTCAT 59.508 47.619 0.00 0.00 0.00 3.06
726 743 8.065473 TGCCACATGTCATTTCAACTATAATT 57.935 30.769 0.00 0.00 0.00 1.40
792 809 8.474006 AGTTGAAGTACCAAAATTTTGTGTTC 57.526 30.769 25.25 20.36 36.45 3.18
818 835 1.135315 CAAAGAACATGAGCCGCGG 59.865 57.895 24.05 24.05 0.00 6.46
1003 1021 2.158475 TCAGGTTTCCTTCCAGCAATGT 60.158 45.455 0.00 0.00 0.00 2.71
1099 1374 8.818057 ACATACATGCTAATTACTTTTCGTCTC 58.182 33.333 0.00 0.00 0.00 3.36
1140 1701 2.735823 CTCAAAGGTTTTGTGCTGCTC 58.264 47.619 0.00 0.00 0.00 4.26
1141 1702 1.408702 TCAAAGGTTTTGTGCTGCTCC 59.591 47.619 0.00 0.00 0.00 4.70
1142 1703 1.410153 CAAAGGTTTTGTGCTGCTCCT 59.590 47.619 0.00 0.00 0.00 3.69
1143 1704 1.035139 AAGGTTTTGTGCTGCTCCTG 58.965 50.000 0.00 0.00 0.00 3.86
1144 1705 1.006922 GGTTTTGTGCTGCTCCTGC 60.007 57.895 0.00 0.00 40.20 4.85
1145 1706 1.458639 GGTTTTGTGCTGCTCCTGCT 61.459 55.000 0.00 0.00 40.48 4.24
1313 2110 0.731417 CTCCGTCGTCCGAGTGTATT 59.269 55.000 0.00 0.00 39.56 1.89
1356 2153 3.322254 TCACTCCTCCTTGTTCTGAACTC 59.678 47.826 20.18 0.00 0.00 3.01
1468 2265 2.019897 GCAGGGATTTGGGGAATGCG 62.020 60.000 0.00 0.00 36.98 4.73
1532 2329 4.113354 GAGCCTTCGATACCTGTAAGTTG 58.887 47.826 0.00 0.00 0.00 3.16
1655 2452 3.403228 AAATGAGTGGGCCAATACCAT 57.597 42.857 8.40 4.84 40.70 3.55
1657 2454 1.595311 TGAGTGGGCCAATACCATCT 58.405 50.000 8.40 0.00 40.70 2.90
1796 2593 5.208503 GCTACAACAAGCTCTTTTTCAGAC 58.791 41.667 0.00 0.00 39.50 3.51
1950 2751 1.349357 GGTTGGAGCTTCAGGAGAACT 59.651 52.381 0.00 0.00 0.00 3.01
2022 2823 4.021368 GGGACTTGACTAAGCTGTGAGTAA 60.021 45.833 0.00 0.00 37.43 2.24
2083 2900 0.685097 CCTTCCTTTCCCAGTGACGA 59.315 55.000 0.00 0.00 0.00 4.20
2104 2922 1.257936 CCGGTTGACGCGATATCTTTG 59.742 52.381 15.93 0.00 42.52 2.77
2126 2948 0.445436 CTTCACGCAGAGATGTTGCC 59.555 55.000 0.00 0.00 38.31 4.52
2222 3063 6.154534 TGTGACATATACAGCTAGAGGTTTGT 59.845 38.462 0.00 0.00 0.00 2.83
2255 3096 1.550072 ACAAGAATTCCCCAATTGGCG 59.450 47.619 19.75 11.21 31.94 5.69
2270 3111 2.502510 GCGTCATTTGCAGTGGCG 60.503 61.111 19.73 19.73 46.60 5.69
2300 3141 0.034059 AGGACACGCTCAAGTGAAGG 59.966 55.000 4.00 0.00 44.43 3.46
2379 3224 2.350772 CCGTTCTGAAACTGATGGCAAC 60.351 50.000 0.00 0.00 32.95 4.17
2445 3349 8.862325 ATTGTAGACATTTGTTCAGTCCATTA 57.138 30.769 0.00 0.00 32.82 1.90
2464 3368 8.072567 GTCCATTATTATTAGCAGCAACTTCAG 58.927 37.037 0.00 0.00 0.00 3.02
2465 3369 6.860023 CCATTATTATTAGCAGCAACTTCAGC 59.140 38.462 0.00 0.00 0.00 4.26
2522 3426 7.631717 AACAATCCTTCTGGTTTATCTTAGC 57.368 36.000 0.00 0.00 34.23 3.09
2527 3431 5.013704 TCCTTCTGGTTTATCTTAGCCACAA 59.986 40.000 0.00 0.00 34.23 3.33
2529 3433 6.208599 CCTTCTGGTTTATCTTAGCCACAAAA 59.791 38.462 0.00 0.00 0.00 2.44
2538 3488 5.371115 TCTTAGCCACAAAAATAGCACAC 57.629 39.130 0.00 0.00 0.00 3.82
2539 3489 4.824537 TCTTAGCCACAAAAATAGCACACA 59.175 37.500 0.00 0.00 0.00 3.72
2555 3505 2.740981 CACACAGTGCTTCAGGAATCTC 59.259 50.000 0.00 0.00 0.00 2.75
2566 3516 4.079980 TCAGGAATCTCGAACCAAAACA 57.920 40.909 0.00 0.00 0.00 2.83
2572 3522 5.633601 GGAATCTCGAACCAAAACAAATTCC 59.366 40.000 0.00 0.00 34.63 3.01
2601 3552 6.623549 GCTCAGTAAAATCTTTAGCATGCACA 60.624 38.462 21.98 3.86 0.00 4.57
2602 3553 6.611381 TCAGTAAAATCTTTAGCATGCACAC 58.389 36.000 21.98 2.20 0.00 3.82
2603 3554 6.430925 TCAGTAAAATCTTTAGCATGCACACT 59.569 34.615 21.98 0.61 0.00 3.55
2604 3555 6.744537 CAGTAAAATCTTTAGCATGCACACTC 59.255 38.462 21.98 0.00 0.00 3.51
2616 3567 3.961197 ACACTCTGCACGCGACGA 61.961 61.111 15.93 5.76 0.00 4.20
2629 3612 1.323235 CGCGACGATGAGCAAACATAA 59.677 47.619 0.00 0.00 0.00 1.90
2631 3614 3.345714 GCGACGATGAGCAAACATAAAG 58.654 45.455 0.00 0.00 0.00 1.85
2637 3620 5.882557 ACGATGAGCAAACATAAAGGAAGAT 59.117 36.000 0.00 0.00 0.00 2.40
2638 3621 6.037610 ACGATGAGCAAACATAAAGGAAGATC 59.962 38.462 0.00 0.00 0.00 2.75
2639 3622 6.037500 CGATGAGCAAACATAAAGGAAGATCA 59.962 38.462 0.00 0.00 0.00 2.92
2643 3626 7.177216 TGAGCAAACATAAAGGAAGATCAACAT 59.823 33.333 0.00 0.00 0.00 2.71
2651 3634 6.764308 AAAGGAAGATCAACATACATGTGG 57.236 37.500 9.11 2.98 41.61 4.17
2724 3709 4.333913 AGCTGTGTCTATCCAATAGCAG 57.666 45.455 0.00 0.00 32.31 4.24
2739 3724 5.163622 CCAATAGCAGGTTCAAATGTAGTGG 60.164 44.000 0.00 0.00 0.00 4.00
2832 3824 3.854666 AGTTCAAGACTCACATCGATGG 58.145 45.455 28.09 17.13 31.20 3.51
2934 3926 1.407979 GAAATGCAGCCTTCCTCCATG 59.592 52.381 0.00 0.00 0.00 3.66
2955 3947 1.542472 TCACGCCGACAAGACTTCATA 59.458 47.619 0.00 0.00 0.00 2.15
2970 3962 6.162079 AGACTTCATACTTCATCACACAGTG 58.838 40.000 0.00 0.00 34.45 3.66
3014 4006 3.379452 AGTCTTACTCTTCATCCCCCTG 58.621 50.000 0.00 0.00 0.00 4.45
3046 4038 7.651304 ACAACATCGAATCAAACATTAGCAAAA 59.349 29.630 0.00 0.00 0.00 2.44
3085 4078 8.286191 AGGCATTCCTTTTGTTTATAAGAGAG 57.714 34.615 0.00 0.00 40.66 3.20
3086 4079 8.109634 AGGCATTCCTTTTGTTTATAAGAGAGA 58.890 33.333 0.00 0.00 40.66 3.10
3088 4081 9.780413 GCATTCCTTTTGTTTATAAGAGAGAAG 57.220 33.333 0.00 0.00 0.00 2.85
3111 4104 3.267860 GAGGAGCTGGCGCGATTG 61.268 66.667 12.10 0.00 42.32 2.67
3254 4247 9.017509 TCAATTGATTGCTATTCAAAGTCTTCT 57.982 29.630 3.38 0.00 38.34 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 7.445945 AGCAACTGAAAGATTTCTGTAGTAGT 58.554 34.615 15.41 3.84 44.92 2.73
154 155 2.093816 TGATAGAAGACACTGCTGGCTG 60.094 50.000 0.00 0.00 35.10 4.85
191 197 9.851686 TGATGTAGTCAATGCTTATCCTTAATT 57.148 29.630 0.00 0.00 32.78 1.40
192 198 9.277783 GTGATGTAGTCAATGCTTATCCTTAAT 57.722 33.333 0.00 0.00 38.90 1.40
193 199 8.264347 TGTGATGTAGTCAATGCTTATCCTTAA 58.736 33.333 0.00 0.00 38.90 1.85
194 200 7.791029 TGTGATGTAGTCAATGCTTATCCTTA 58.209 34.615 0.00 0.00 38.90 2.69
363 374 4.683320 GCATGCTCTTTTCTCAACCTTTTC 59.317 41.667 11.37 0.00 0.00 2.29
476 487 3.181429 ACCAGTCATTGTCCTGATGGTTT 60.181 43.478 7.40 0.00 35.42 3.27
591 607 1.229428 CTCATGTCAAACACGTGGCT 58.771 50.000 21.57 3.19 41.80 4.75
603 619 4.796231 ACGGTCGCGGCTCATGTC 62.796 66.667 11.94 0.00 0.00 3.06
604 620 2.495366 TAAACGGTCGCGGCTCATGT 62.495 55.000 11.94 1.13 0.00 3.21
630 647 2.356553 GCAGGCGGTGACACGTTA 60.357 61.111 0.00 0.00 35.98 3.18
638 655 2.563798 AAACACATGGCAGGCGGTG 61.564 57.895 14.72 14.72 37.29 4.94
641 658 1.081242 GACAAACACATGGCAGGCG 60.081 57.895 0.00 0.00 0.00 5.52
673 690 1.705337 CCAGGCCAAATACTGTCGCG 61.705 60.000 5.01 0.00 32.90 5.87
674 691 0.676782 ACCAGGCCAAATACTGTCGC 60.677 55.000 5.01 0.00 32.90 5.19
792 809 5.739161 GCGGCTCATGTTCTTTGTATAAAAG 59.261 40.000 0.00 0.00 0.00 2.27
1140 1701 5.531634 ACAAATTGTGTGTAAATCAGCAGG 58.468 37.500 0.00 0.00 39.72 4.85
1141 1702 6.074195 CCAACAAATTGTGTGTAAATCAGCAG 60.074 38.462 0.00 0.00 40.60 4.24
1142 1703 5.752472 CCAACAAATTGTGTGTAAATCAGCA 59.248 36.000 0.00 0.00 40.60 4.41
1143 1704 5.752955 ACCAACAAATTGTGTGTAAATCAGC 59.247 36.000 0.00 0.00 40.60 4.26
1144 1705 9.128107 GATACCAACAAATTGTGTGTAAATCAG 57.872 33.333 0.00 0.00 40.60 2.90
1145 1706 8.085296 GGATACCAACAAATTGTGTGTAAATCA 58.915 33.333 0.00 0.00 40.60 2.57
1313 2110 4.590647 TGAAGAAAAACATGGGTGGCATAA 59.409 37.500 0.00 0.00 0.00 1.90
1356 2153 3.728864 CGATCAAATCAGTTTCGGCCTTG 60.729 47.826 0.00 0.00 0.00 3.61
1655 2452 1.554822 CCTCAGGTTTCCCAGGGTAGA 60.555 57.143 5.01 0.00 0.00 2.59
1657 2454 0.494551 TCCTCAGGTTTCCCAGGGTA 59.505 55.000 5.01 0.00 0.00 3.69
1729 2526 3.813596 GCGATGTTCCCAAGCGAT 58.186 55.556 0.00 0.00 0.00 4.58
1796 2593 0.872021 GGTGTCTTAGCATCTCGCCG 60.872 60.000 0.00 0.00 44.04 6.46
1923 2724 2.553904 CCTGAAGCTCCAACCTGACAAT 60.554 50.000 0.00 0.00 0.00 2.71
2022 2823 2.218603 GGTGTGTGAAACGAACTCCAT 58.781 47.619 0.00 0.00 42.39 3.41
2083 2900 0.458669 AAGATATCGCGTCAACCGGT 59.541 50.000 0.00 0.00 36.94 5.28
2104 2922 2.030213 GCAACATCTCTGCGTGAAGATC 59.970 50.000 0.00 0.00 0.00 2.75
2126 2948 0.958091 TGCCGGTGAGATTGTTTTGG 59.042 50.000 1.90 0.00 0.00 3.28
2194 3016 7.695480 ACCTCTAGCTGTATATGTCACATAG 57.305 40.000 3.38 0.00 0.00 2.23
2255 3096 1.154413 CGTCGCCACTGCAAATGAC 60.154 57.895 0.00 0.00 37.32 3.06
2270 3111 1.153823 CGTGTCCTGGATGACCGTC 60.154 63.158 0.00 0.00 39.42 4.79
2318 3160 1.886886 TACGAAAGTTGAGGTTGCCC 58.113 50.000 0.00 0.00 46.40 5.36
2345 3187 4.223320 TCAGAACGGAAAAACATTCAGC 57.777 40.909 0.00 0.00 0.00 4.26
2379 3224 5.407995 TCAGTTTGCCTTGAAAACAGTTTTG 59.592 36.000 16.21 2.96 39.49 2.44
2390 3235 2.030371 TGCATGTTCAGTTTGCCTTGA 58.970 42.857 0.00 0.00 35.51 3.02
2391 3236 2.400399 CTGCATGTTCAGTTTGCCTTG 58.600 47.619 0.00 0.00 35.51 3.61
2392 3237 1.269936 GCTGCATGTTCAGTTTGCCTT 60.270 47.619 0.00 0.00 36.49 4.35
2393 3238 0.316204 GCTGCATGTTCAGTTTGCCT 59.684 50.000 0.00 0.00 36.49 4.75
2420 3265 7.765695 AATGGACTGAACAAATGTCTACAAT 57.234 32.000 0.00 0.00 0.00 2.71
2445 3349 7.572523 TTATGCTGAAGTTGCTGCTAATAAT 57.427 32.000 0.00 0.00 34.32 1.28
2538 3488 2.662006 TCGAGATTCCTGAAGCACTG 57.338 50.000 0.00 0.00 0.00 3.66
2539 3489 2.354203 GGTTCGAGATTCCTGAAGCACT 60.354 50.000 10.90 0.00 39.30 4.40
2555 3505 3.121113 GCATCGGAATTTGTTTTGGTTCG 59.879 43.478 0.00 0.00 0.00 3.95
2572 3522 6.349973 TGCTAAAGATTTTACTGAGCATCG 57.650 37.500 0.00 0.00 38.61 3.84
2601 3552 2.504899 CATCGTCGCGTGCAGAGT 60.505 61.111 5.77 0.00 0.00 3.24
2602 3553 2.202479 TCATCGTCGCGTGCAGAG 60.202 61.111 5.77 0.00 0.00 3.35
2603 3554 2.202479 CTCATCGTCGCGTGCAGA 60.202 61.111 5.77 1.77 0.00 4.26
2604 3555 3.906649 GCTCATCGTCGCGTGCAG 61.907 66.667 5.77 0.00 0.00 4.41
2608 3559 1.014044 ATGTTTGCTCATCGTCGCGT 61.014 50.000 5.77 0.00 0.00 6.01
2611 3562 3.616821 TCCTTTATGTTTGCTCATCGTCG 59.383 43.478 0.00 0.00 0.00 5.12
2616 3567 7.177216 TGTTGATCTTCCTTTATGTTTGCTCAT 59.823 33.333 0.00 0.00 0.00 2.90
2629 3612 6.065976 TCCACATGTATGTTGATCTTCCTT 57.934 37.500 0.00 0.00 39.39 3.36
2631 3614 7.445121 TCTATCCACATGTATGTTGATCTTCC 58.555 38.462 13.02 0.00 40.85 3.46
2637 3620 7.654022 TGTACTCTATCCACATGTATGTTGA 57.346 36.000 0.00 1.85 39.39 3.18
2638 3621 9.631452 CTATGTACTCTATCCACATGTATGTTG 57.369 37.037 0.00 0.00 39.39 3.33
2639 3622 8.307483 GCTATGTACTCTATCCACATGTATGTT 58.693 37.037 0.00 0.00 39.39 2.71
2643 3626 6.775629 TGTGCTATGTACTCTATCCACATGTA 59.224 38.462 0.00 0.00 34.78 2.29
2724 3709 4.458989 TGATGCTTCCACTACATTTGAACC 59.541 41.667 0.00 0.00 0.00 3.62
2739 3724 4.036734 TCTGAACCAAAGTTGTGATGCTTC 59.963 41.667 0.00 0.00 35.94 3.86
2784 3776 5.298276 TCTGTTAAGTTTGTGGGTCATTGTC 59.702 40.000 0.00 0.00 0.00 3.18
3014 4006 8.728088 AATGTTTGATTCGATGTTGTTACTTC 57.272 30.769 0.00 0.00 0.00 3.01
3046 4038 3.763897 GGAATGCCTTGTATTGTGTTCCT 59.236 43.478 0.00 0.00 33.00 3.36
3072 4064 9.535170 TCCTCTTCTTCTTCTCTCTTATAAACA 57.465 33.333 0.00 0.00 0.00 2.83
3083 4076 2.418609 GCCAGCTCCTCTTCTTCTTCTC 60.419 54.545 0.00 0.00 0.00 2.87
3085 4078 1.738700 CGCCAGCTCCTCTTCTTCTTC 60.739 57.143 0.00 0.00 0.00 2.87
3086 4079 0.248843 CGCCAGCTCCTCTTCTTCTT 59.751 55.000 0.00 0.00 0.00 2.52
3088 4081 1.813337 GCGCCAGCTCCTCTTCTTC 60.813 63.158 0.00 0.00 41.01 2.87
3111 4104 6.548622 AGGAAAAGAACTTAAGGTTTGTACCC 59.451 38.462 7.53 0.00 46.28 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.