>input_sequence_55178
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---------------------------------------------------------ATGTCAGCTCAGACTGGAGCAGC
A---------------CTCCTCCTTGCTCTCGCGGCCATCGCCAGCAGCAACACTGA-----------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------AGGTACATACATACATGCTAA
TTACTTTTCGTCTCCCCAAGTGACTTCCTTGTTGCTCA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AAGGTTTTGTGCTGCTCCTGCTGATTTACACACAA--TTTGTTGGTATCCGGAGGCG-------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------ACATACTTTACGCGCAAAGGCAGGC
GTGGAATGACCCGAACGGTGTGCTGCAGAGCTGGGATCCGACCCTTGCCAATCCCTGCTATTGGTTTCATGTCAGCTGCA
ACAACGAAAACTCCGTCGTCCGAGTGTATTTATGCCACCCATGTTTTTCTTCACTCCTCCTTGTTCTGAACTCAAGGCCG
AAACTGATTTGATCGTAGTTCTTTTCGACATTCAGAACCTTGTGACTTGGACAAAAGTTCCACTACCTGAGTTCTTCCTT
ACTGTGCAGGGATTTGGGGAATGCGGGCATCTCAGGCCCCCTCATTCCTGAACTGGGCCAACTGAAGAGCCTTCGATACC
TGTAAGTTGTACTGCAACTTGCTGCAGAGTGCAGACGTGTCGAATTACACTCAAAGTTTCCCTACAGTACAGAATGACAT
TCTCATCTTCACAGGGAGCTGTATGAGAACAAAATGAGTGGGCCAATACCATCTACCCTGGGAAACCTGAGGAGACTGAT
CAGCCTTGATCTCTACAGCAACCATCTCACTGGCGCGATACCGGCATCGCTTGGGAACATCGCGTCGCTGCGTTTCCTGT
ATGAGTCCTGCTACAACAAGCTCTTTTTCAGACGGCGAGATGCTAAGACACCTATCA----TCTCCAACTGCTGAAAATA
ACCTGTTGGTGTCTCTCTGCAGAAGGATCCATCGGAACAAGCTTGCAGGAGGTATACCGGCGTCGCTGGGTCGTCTGACG
AAGATTGTCAGGTTGGAGCTTCAGGAGAACTTGCTGACCGGCACGGTGCCGCTGGAGGTCCTCTCTCTTGTTCTTGTCGG
GGACTTGACTAAGCTGTGAGTAATGG----------AGTTCGTTTCACACACC------ACAATTTGCATCTGTTTTCTT
CCTTCCTTTCCCAGTGACGACCGGTTGACGCG-ATATCTTTGATCTTC----ACGCAGAGATGTTGCCCAAAACAATCTC
ACCGGCACTGTCAGATCATCTAAACAAAGAGGTAGGATGCATTTTATTTGTATATCTATGTGA-----------------
--CATATACAGCTAGAGGTTTGTTGCTTTGTGCTCACAAGAATTCCCCAATTGGCGTCATTTGCAGTGGCGACGGTCATC
CAGGACACGCTCAAGTGA--------------------------------------------------------------
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--------------------------------------------------
>chr3D_1_TraesCS3D01G472300
AGGATACCAAGAATTCTCAAATCTAACACATAATACCAAGAATCCTAAAATCGTCTTCGCCACATATATTCTGAGTTTTT
GACTGCAAGAACTGGGCGCATGCATGCACCATTGGAAACTACTACAGAAATCTTTCAGTTGCTTTGACGTCAAGC-----
AGCCAGCAGTGTCTTCTATCACACAAAAGTTAACCTAATTAAGGATAAGCATTGACTACATCACAAGACAGATGATAATT
-GCTTTTACTACAAAGTTGATAATTGACTAATGTA----TTAGGACCAAGACAGACCAAGGGCACTCATTTTGCTGATGT
TGCGCTGTGAAATCTGCCACTACGAAATGCTGAGAAGACCTCCTCGCAAAAAAGAAAAGGTTGAGAAAAGAGCATGCGTG
TGCGAGAAGATTGCTTCGGGGCTCAAAATTGGCGTCAAGGTTTAATCACATTCAAAGCTCTTGACTTGACTCGTGAGCAC
CTCTACAAACCATCAGGACAATGACTG---GTTCACTGACAAAAAATGAGTAGTTCCTACTTCAAGAG-TTTT-TTTTTA
CTCCAGACCCTGGTTTGAGAGTAACTTCTCGTCGACAGAATGCGCCAGCCACGTGTTTGACA-TGAGCCGCGACCGTTTA
TAATTGTAACGTGTCACCGCCTGCCATGTGTTTGTCAGTGAGCCGCGACCGCGACAGTATTTGGCCTGGTCTATGCCTGC
CACATGTCATTTCAACTATAATTGGAAATTTAGATCATTGACCTGATCTAAATTTCCATTTATAGTTGAAGTACCAAAAT
TTTGTGTTCTTTTATACAAAGAACATGAGCCGCGGCCGTTTGCAACAAAATTCTTCCGTTAACACGGTAAGCCGGTCAAT
AGAAGAGAAGAGCCAAAGGCTGACCCAGAAAGTGAAAGCTTCTGATTACCCAGTGGAATTGTTGCATATAAAGGACCCGT
CTCTCCTC-TAGCGTTTCAGTGTGCCCACCCAATACACCTCAGGTTTCCTTCCAGCAATGTCAGCTCAGACTGGAGCAGC
A---------------CTCCTCCTTGCTCTCGCGGCCATCGCCAGCAGCAACACTGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AGGTACATACATACATGCTAA
TTACTTTTCGTCTCCCCAAGTGACTTCCTTGTTGCTCA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AAGGTTTTGTGCTGCTCCTGCTGATTTACACACAA--TTTGTTGGTATCCGGAGGCG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ACATACTTTACGCGCAAAGGCAGGC
GTGGAATGACCCGAACGGTGTGCTGCAGAGCTGGGATCCGACCCTTGCCAATCCCTGCTATTGGTTTCATGTCAGCTGCA
ACAACGAAAACTCCGTCGTCCGAGTGTATTTATGCCACCCATGTTTTTCTTCACTCCTCCTTGTTCTGAACTCAAGGCCG
AAACTGATTTGATCGTAGTTCTTTTCGACATTCAGAACCTTGTGACTTGGACAAAAGTTCCACTACCTGAGTTCTTCCTT
ACTGTGCAGGGATTTGGGGAATGCGGGCATCTCAGGCCCCCTCATTCCTGAACTGGGCCAACTGAAGAGCCTTCGATACC
TGTAAGTTGTACTGCAACTTGCTGCAGAGTGCAGACGTGTCGAATTACACTCAAAGTTTCCCTACAGTACAGAATGACAT
TCTCATCTTCACAGGGAGCTGTATGAGAACAAAATGAGTGGGCCAATACCATCTACCCTGGGAAACCTGAGGAGACTGAT
CAGCCTTGATCTCTACAGCAACCATCTCACTGGCGCGATACCGGCATCGCTTGGGAACATCGCGTCGCTGCGTTTCCTGT
ATGAGTCCTGCTACAACAAGCTCTTTTTCAGACGGCGAGATGCTAAGACACCTATCA----TCTCCAACTGCTGAAAATA
ACCTGTTGGTGTCTCTCTGCAGAAGGATCCATCGGAACAAGCTTGCAGGAGGTATACCGGCGTCGCTGGGTCGTCTGACG
AAGATTGTCAGGTTGGAGCTTCAGGAGAACTTGCTGACCGGCACGGTGCCGCTGGAGGTCCTCTCTCTTGTTCTTGTCGG
GGACTTGACTAAGCTGTGAGTAATGG----------AGTTCGTTTCACACACC------ACAATTTGCATCTGTTTTCTT
CCTTCCTTTCCCAGTGACGACCGGTTGACGCG-ATATCTTTGATCTTC----ACGCAGAGATGTTGCCCAAAACAATCTC
ACCGGCACTGTCAGATCATCTAAACAAAGAGGTAGGATGCATTTTATTTGTATATCTATGTGA-----------------
--CATATACAGCTAGAGGTTTGTTGCTTTGTGCTCACAAGAATTCCCCAATTGGCGTCATTTGCAGTGGCGACGGTCATC
CAGGACACGCTCAAGTGAAGGCTACAAGCTGAGCAGCA-GGGCAACCTCAACTTTCGTAAGAATAAGCTGAATGTTTTTC
---CGTTCTGAAACTGATGGCAACAAAACTGTTTTCAAGGCAAACTGAACATGCAGCCTGAGCTATTGTAGACATTTGTT
C-----------------------------------------------------------AGTCCATTATTATTAGCAGC
AACTTCAGCATAATGAATCCTTCTGTGCACATTTACCAGAAAACAATCCTTCTGGTTTATCTTAGCCACAAAAA------
----------------------------------------TAGCACACAGTGCTTCAGGAATCTCGAACCAAAACAAATT
CCGATGCTCAGT-AAAATCTTTAGCATGCACACTCTGCACGCGACGA--------------------------------T
GAGCAAACATAAAGGAAGATCAACATACATGTGGATAGAGTACATAGCACACAGATT--TATCTCAAATATAATGACACA
TAGACATAGCTGTGTCTATCCAATAGCAGGTTCAAATGTAGTGGAAGCATCACAACTTTGGTTCAGAGAAATAAAGGA--
----CAGCTGCAGC-GACAATGACCCACAAACTTAACAGACTAGTTCAAGACTCACATCGATGGCACGGACAATAGCTTA
TAGCTATGATTTATTCTTAAATAATAAAGATGGTGCTAAATAGGGCAGTCTTCTGATAGAGATCAGAAATGCAGCCTTCC
TCCATGTCACGCCGACAAGACTTCATACTTCATCACACAGTGACGGTGATCACCCCTGTTCTCAAGTCTTACTCTTCATC
CCCCTGAAGTAACAACATCGAATCAAACATTAGCAAAAGGAACACAATACAAGGCATTCCTTTTGTT-TATAAGAGAGAA
GAAGAAGAGGAGCTGGCGCGATTGGGTACAAACCTTAAGTTCTTTTCCTCGATGAGCTTGTGGATGCCTCGGCCTCCTGC
CGCGGCGCGTTCCGGTTCCGGGCCAGCACAGGCTCCTCCCGGACCGGATTCACTGGAGTTTCAATTGATTGCTATTCAAA
GTCTTCTTCATACTCCTCGTCAGACACGTCCTCGTAAGCATTCACCTCAA
>chrUn_1
AGGATACCAAGAGTCCTCAAATCTAACACATAATACAAAGAATTCTAAAATCGTCTTCGCCACATATATTCTGAGTTTTT
GACTGCAAGAACTGGGCGCATGCATGCACCATTGGAAGCTACTACAGAAATCTTTCAGTTGCTTTGACGTCAAGTAGCCA
AGCCAGCAGTGTCTTCTATGACACAAAAGTTAACCT----AAGGATAAGCATTGACTACATCACAACACAGATGATAATT
TGCTTTTACTAGAAAGTTGATAATTGACTAATGTACGTATTAGGACCAAGATAGACCAAGCGCACTCATTTTGCTGATGT
TGCGTTGTGAAATCTGCCACTACGAAATGCTGAGAAGACCTCCTTGCAAAAAAAAAAAGATTGAGAAAAGAGCATGCTTG
TGCGAGAAGATTGCTTCGGCGGTCAACATTGGCGTCAAGGTTTAATCATATTTAAAGCTCTTGACTTGACTCGTGAGCAC
CTCTTGG-------AGGACAATGACTG---GTTCACTGACAAAAAATGAGTAGTTCCTACTTGAAGAGTTTTT-TTTTTA
CTCCAGACCCTGGTTTGAGAGTAACTTCTCGTCGACAGAATGCGCCTGCCACGTGTTTCTCAGTGAGCCGCGACCGTTTA
TAATTGGGACGTGTAACTGCCTGCCATGTGTTTGTCAGTGAGCCGCGACT-CGACAGTATTTGGCCTGGTCTATGCCTGC
CACGTGTCACTTCAACTATAATAGGAAATTTAGATCATTGACCTGATCTAAATTTCCATTTATAGCTGAAGTACCAAAAT
TTTGTGTTTTTTTATCCAAAGAACATGAGCCGTGACCGTTTGCAACAAAATTCTTCCGTTAACACGGTAAGCCAATCAAT
AAAAGAGAAGAGCCAAAGACTGACCCAGAAAGTGAAAGCTTCTGATTACCCAGTGAAATTGTTGCATATAAAGGACTCAT
CTCTCCTC-TAGCGTTTCAGTGTGCCCACCCAATACACCTTAGTTTTCCTTCCAGCAATGGGAGCTCAGACTGGAGCAAC
ACTCCTCCTCGCCAGCCTCCTCCTTGCTCTTGCGGCCATCACCAGCAGCAACACTGA-----------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------AGGTACATACATACATACACA
G------------------GTGACTTCCTTGTTGCTCA------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----AAGGTTTTGTGCTGCT------GATTTACACACAA--TTTGTTGGTATCCGGAGGCG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ACATACTTTACGCGCAAAGGCAGGC
GTGGAATGACCCCAACGGCGTGCTACAGAGCTGGGATCCGACCCTTGCCAATCCCTGCTATTGGTTTCATGTCAGCTGCA
ACAACGAAAACTCCGTCGTCCGAGTGTATATATGCCACCCATGTTTTTCTTTACTCCTCCTTGTTCTGAACTGAAGGCCG
AAACTGATTTGATCGTAGTTCTTTTCGATAGTCAGAACCTTGTGACTTGGACAAAAGTTGCACTACCTGAGTTGTTCCTT
ACTATGCAGGGATTTGGGGAATGCAGGCATCTCAGGCCCCCTCATTCCTGAACTGGGCCAACTGAAGAGCCTTCGGTACC
TGTAAGTTCTACTGCAACTTGCTGCAGAGTGCAGACCTGTAGAATTACACTCAAAGTTTCCCTACAGTACAGAATGACAT
TCTCATCTTCACAGGGAGCTGTATGAGAACAAAATGAGTGGGCGAATACCAGCGACCCTGGGAAACCTGAGGAGACTGAT
CAGCCTTGATCTTTACAGCAACCATCTCACTGGGGCGATACCGGGCTCGCTCGGGAACATCGCGTCGCTGTGTTTCCTGT
ATGAGTCCTGCTACAACAAGCTCTTTTTCAGATGGCGAGATGCTAAGACACCTATCA----TCTCCAACTGCTAAAAATA
ACCTGTTGGTGTCTCTCTGCAGAAGGATCCATCGGAACAAGCTTGCAGGAGGTATACCAGCGTCGCTGGGCCGCCTGACA
AAGCTTCTCAGGTTGGAGCTTCAGGAGAACATGCTGACCGGCACGGTGCCGCTGGAGGTCCTGTCTCTTGTTCTTGTCGG
AGACTTGACTAAGCTGTGAGTAG------TACATACAGTTCGTTTCACACACC------ACAATTTGCATCTGTTTTCTT
CCTTCCTTTCCCAGTGATGTCCGGTTGACGCG-ATATCTTCTATCTTCGTTCACGCAGAGATGTTGTGGAAAACAATCTC
AGCGGCACTGTCAGATCATGTAAACAAAGAGGTAGGGTGCATTTTATTTGTATACTTGTGT-------------------
----TGTACAGCTAGAGGTTTGGTGCTTTGTGCTCACAAGAATTTCCCAATCGGC-------------------GTCATC
CAGTACACGCTCAAGTGAAAC-----------------------------------------------------TTTTTC
---CGTTCTGTAACTGATGGCAATAAAACTGTTTCAG-GGCAAACTGAACAAGCAGCCTGAGCTGTTGTAGACCTTTGTT
CCGTTAAGAAACAAAAGGAAGAAATAAGGAAT------------------------------------------------
---------------AATCCTTCTGTGCACATTTACCAGAAAACAATCCCTCTGGTTTATCTTAGTCACAGACA------
----------------------------------------TAGCACATGGTGCTTCAGGAATCTAGAACCAAAACTAATT
CTGATGCTCAGTAAAAATCTTTAGCATGCACTA--TGCCTGTGACGT--------------------------------T
GAGCAAACG-------------ACAAACATGTGAATAGAACACATAGCACACAGACTTATATCTCAAATATAATGACACA
TAGACATAGCTGTGTCTATCCAATAGCACGTTCAAATGTAGTTTAAGCATCACAACATTGGTTCAGAGAAATAAAGGATG
GCTGCAGCTGCAGC-AACAACGACCCACAAACTTAACAGACTAGTTCAAGACTCAAATCGATTACACGGACAATAGCTTA
TAGCTATGATTTATTCTGATAAAATAAAGATAGTGCTAAATAGGACAGTCTTCTGATAGAGATCAGAAATGCAGCCTTCC
TCCATATCACGCCGACAAGACTTCATGCTTCATCACACAGTAACGGTGATCACCCCTGTTCTCAAGTCTTACTCTTCATC
CCCCTAAAGTAACAACATCGAATCAAACATTAGCAACGCGAACAGAATACAAGGCATTCCTTTGTTTATATAGGAAAAGA
AAAGAACATGAGCTTGCGTGCTTTGGTGCAAACCTTAAGTTGTTTTCCTCGATGAGCTTGTGGATGCCTCGGCCTCCTGC
CGCGGCGCGTTCCGTTTCC-GGCCAGCACAGGCTCCTCCCGGACCGGATTCACTGGAGTTTCAATTGATTGCTATTCAAA
GTCTTCGTCATACTCCTCGTCAGACACGTCCTCGTAAGCGTTCACCTCAA
>chr3A_1
AGGATACCAAGAATCCTCAAATCCAACACATAATACCAAGAATCTTAAAATCGTCTCTGCCACATATGTTCTGAGTTTCT
ACAA-CAAGAACTGTGCGCATGCATGCACCATTGGAACCTACTACAGAAATCTTTCAGTTGCTCTGAGATCAAGT-----
AGCCAGCAGTGTCTTCTATCACACAAAAGTTAACCT----AAGGATAAGCATTGACTACATCACAACACAGATGATAATT
-GCTTTTACTACAAAGTTGATAACTGACTCATGTA----TTAGGACCAAGACAGACCAAGGGCTCTCATTTTGCTAATGT
TGCGCTGTGAAATCTGCCACTACGAAATGCTGAGAAGACCTCCTCGC-AAAAGAAAAAGGTTGAGAAAAGAGCATGCGTG
TGCGAGAAGATTGCTTCGGGGCTCACAATTGGCGTCAAGGTTTAATCACATTCAAAGCTCTTGACTTGACTCGCGAGCAC
CTCTACTAACCATCAGGACAATGACTGCAGGTTCACTGACAAAAAATGAGTAGTCCCTACTTCAAGAGTTACTATTTTTA
CTCCAGACCCTGGTTTGAGAGTAACTTCTCGTCCA---------------------------------------------
---------------------------------------------------------------------------CCTGC
CACGTGTCACTTCAACTATAATAAAAAAAA---------GACCTGATCTAAATTTTCATTTATAGTTGAAGTACCAAGAT
TTTGTGTTTCTTTATACGAAGAACATGAGCCGCGACCGTTTGCAACAAAATTCTTCCGTTAATACGGTAAGCCAGTCAAT
AGAGGAGAAGAGCCAAAGGCTGACCCAGAAAGTGAAAGCTTCTGGTTACCCAGTGGAATTGTTGCATATAAAGGACCCGT
CTCTCCTCTTAACGTTTCAGTGTGCCCGCCCAATACACCTGAGGTTTCCTTCCAGCAATGGCAGCTCAGACTGGAGCAGC
AGTCCTCCTCGCCAGCCTCCTCCTTGCTCTTGCAGCCATCGCCAGCAGCAACACTGA-----------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------AGGTACATGCATACATGCTAA
TTACTTTGCGTCT-CCCAAGTGACTTCCTTGTTGCTCA------------------------------------------
--------------------------------------------------------------------------------
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----AAGGTTTTGTGCTGCT------GATTTACACACAATTTTTGTTGGTATCCGGAGGCG-------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------ACATACTTTACGCGCAAAGGCAGGC
GTGGAATGACCCGAACGGTGTGCTGCAGAGCTGGGATCCGACCCTTGCCAATCCCTGCTATTGGTTTCATGTCAGCTGCA
ACAACGAGAACTCCGTCGCCCGAGTGTATATATGCCACCCATGTTTTTCTTCACTCCTCCTTGTTCTGAACTGAAGGCCG
AAACTGAATTGATCATGGTTCTTATCGACATTCAGAACCTTGTGACTTGGACAAAAGTTCCACTACCTGAGTTCTTCCTA
ACTGTGCGGGGATTTGGGGAATGCAGGCATCTCAGGCCCCCTCATTCCTAAACTGGGCCAACTGAAGAGCCTTCGATACA
TGTAAGTTCTACTGCAACTTGCTGCGGAGTGCAGACCTGTCAAATTACACTCAAAGTTTCCCTACAGTACAGAATGACAT
TCTCATCTTCACAGGGAGCTGTATGAGAACAAAATGAGTGGACCAATACCGGCGACGCTGGGAAACCTGAAGAGACTGAT
CAGCCTTGATCTTTACAGCAACCATCTCACAAGCACGATACCGGCCTCGCTCGGGAACATAGGGTCGCTGCGTTTCCTGT
ATGAGTCCTGCTGCAGCAAGCTCCTTTTCTGATTACGAGATGCTACGACACCTATCG----TCTCCAAGTGCTGAAAACA
ATCTGTTGGTGTCTCTCTGCAGAAGGATCCATCGGAACAAGCTTGCAGGAGGTATACCGGCGTCGTTGGGTTGTCTGACG
AAGCTTCTCAGGTTGGAGCTTCAGGAGAACATGCTGACCGGCACGGTGCCGCCGGAGGTCCTCTCTCTTGTTCTTGTCGG
AGAATTGACTAAGCTGTGAGTAGTAGGAGTACATACAGTTGGTTTCACA--CC------ACAATTTGCATCTGTTTTCCT
CCTTCCTTTCCCAGTGATT----GTTGACGCG-ATATCTTTTATCTTC----ACACAGTAATGTTGCGGAAAACAATCTC
ACCGGCACTGTCAGATCATCTAAACAAAAAGGTGGGATGCATATTATTC--------ATGTGA-----------------
--CATGTATAGCTAGAGGTTTGGTGCTTTGTGCTCACACGAATTTCAG-ATTGGCATCACTTGCAGTGACTACGGTCATC
CAAGACACGTTCAACTGAAGACTAGAAGCTGAGCAGCA-TGGCAAACTGAACTTTCGTAAGAATAAATTGAATGGTTTTC
---CGTTCTGAAACTGCCGACAGTAGTTG--------------------CATGCAGCCTGGGCTTTTGTAGACCTCTGTT
CCGTTAAGAGTCAGGGCTTACCTCTCCTTCAAGAAACAATAGAAGAAATACATAGT--TGAGTCCATTGTTATTAGCAGG
AAATTCAAAATAATGATTC--------------------------ATCCTTGTGGTTTATCTTAGTCACATCCATACTTC
TACATCCGTTTGAGCGGCAACTAATTCCGGACGGAGGGAGTAGCACATGGTGCTTCAGGAATCTTGAAGC---------T
CTGATGCTCAGCAAAGATCTTCAGTGTGCACGACAGTCGCCAAGGATGATGAGTGAAACACTCACCCGTTTCACTCGCCT
GAGCAACCATACATGAAGA-----------------AGAGTACATAGCACACAGATT--TATCTCAAATATAATGACACA
TAGACATAGCTGTGTCTACCAAATAGCACGTCCAAATGTACTGATAGCATCACAACTTTGGTTCAGAGAAATAAAGGATA
GCTGCTGCTGCAGCAAACAATGACCCACAAACTTAACAGACTAGTTCAAGACTCACATCAATGACACAAACAATAGCTTA
TAGCTATGATTTATTCTTAAATAATAAAGATGGTGCTAAATAGGGCAGTCTTCCGATAGAAATCAGAAATGCAGCCTTCC
TCCATATCACGCCGACAAGACTTCATGCTTCATCACACAGTAACGGTGATCACCCCTGTTCTCAAGTCTTACTCTTCATC
CCCCTAAAGTAACAACATCGGATCAAACATTAGCAAAGGGAACACAATTAAAGGCCTTCCTTTGTATATAAGAGCAC---
----AAGAGTAGCTGGCACGATTCGGTACAAACCTTAAGTTCTTTTCCTCGATGAGCTTGTGGATGCCTCGGCCTCCTGC
CGTGGCGTGTTCCGGTTCCGGGCCAGCACAGGCTCCTCCCGGACCGGATTCACTGGAGTTTCAATTGATTGCTATTCAAA
GTCTTCATCATACTCCTCGTCAGACACGTCCTCGTAAGCGTTCACCTCAA
>chr3B_1
AGGATTACAAGAATCCTCAAATCTAACACATAATACCAAGAATCCTAAAATCGTCTCTGCCACATATGTTCTGAGTTTCT
ACA-GCAAGAACTGGGCGCATGCATGCACCATTGGAAGCTACTACAGAAATCTTTCAGTTGCTTTGACATCAAGT-----
AGCTAGCAGTGTCTTCTACCACACAAAAGTTAACCTG----AGGATAAGCATTGACCACATCACAACACAGATGAA---T
TGCTTTCACTACAAAGTTGATAATTCACTCATG----TATTAGGACCAAGACAGACCAAGCGCACTCATTTTGCTGATGT
GGCGCCATGAAATATGCCACTAAGGCCCAGTTCTTTTGAGCAAACTGTGGAGAATTTCAGTCTGGAAAATCTGGACCCA-
-----------------------------------------------------AAAGAACTCGACTTGACTTGCAAAATC
TGGAGAGGATTCTCTAGAATCCTAGTGCAACCAAAAGCTCCCAAAAAGCTTGATTTTCCTAGACTCTCAGGATTTTGGTA
AGTCCCA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CCAAAGAAAATGTTTCAAAATAGAAATGTACCCCTATCCCATCGAGAAATTACACCCGGAATGCC
ACTGAGCCCATCCACGCGCTGGACCGAGAAAACGAGCGAGCGAGCAGTCTTCGCTCGACCCCAGTTCGCATCGCGGGAAA
GGACTCCCAGCCACAGCGAGGGCTAGGGTTGCCGCGCCGCCGCCGGAC--------------------------------
---CCACCTCGCCGGCCAGGCCCTTGCCGCCGGCCGCCTTATCTCCCTCCGCCACCCCTCTTCCTTCGCCGCTCATCCAC
CCCTCTGCCCTATCTCCGCCCACAACCACCAGCGCTGCACCCGGACGGCTACCCGACGGGCTTCAGCTGCAACTGGACGG
CCACCGGCGCTGCACCTCGATGGCCACGAACAACCCACGCGAGGAGCAGGCCACACCCATGGCGAGATCCTCTTTCCGAT
CTCTCTGTTCTTCATTTTTCTTATGCTAAATTGGATAGCTAGGCTGATTTATGTTGCATAGGTAGATGGATTGATGCTTG
AATTTGTTAGGTAGATGGATGGATTGATTGCTGATGCTGGTATATGGATGGATGGTGCTAATTTGTGTGTGTGTGTGTGC
GCGCGCGCGCGCGTGCGTGTACTACTGTCAATGCTACTATGGTATTGGTGTTATCGGTGCAATTTTTATGGATCACGGGT
ACATGTCAGACAACTTATAATGTTGCAGACCGGTTTGCACATAGTTGTTCTATCGTTAACAAAAAATTCCACGAGGTTTT
GTAGTGTGTAGATCGCATGGCTGGTGATTACATTAGACCAATTGATCCAACTTTCTCCGAACCACACCCAGTACTTACAA
AGACAAAGTTTTGGCCTCAT------TTTCAACATACTA--TTGGAGCCATTGATGGAACACACATTAAGATGACTGTGC
CCAAGGAGTTGGAGCCCCAACACAGGAATAGGAAAGGTTATACAAGTGAAAATGTTATGGCAGTGTGTGATTTTGATATG
AGGTTCACGTTTGTTGTTCCCGGATGGCCCGGATCTGTTCATGACACACGTGTATGGAGCGATGCCATAGTTCGTTATGA
TCACTTTCCACAACCCCCCATAGGTAATCTCTCACATGTATCCATATTGTTATATACATCCTTTACGCACAAAGGCAGGC
GTGGAATGACCCCAATGACGTGCTGCAGAGTTGGGATCCGACCCTTGACAGTCCCTGCTTTTGGTTTCATGTCTGCTGCA
ACAACACCGCCCTCACCCTAGTG-------TATGCCACCCTTGTTCTTCTTTTCTCCTCCTGGTTCTGAACTGAAGGTCC
AAACTGATTTCATCATAGTTCTTTTCAACATTCAGAAACTTTTAACTTAGACAAGAATTCCACTACG-----------TC
ACTGTGCAGAGATTTGGGGAATGCAGGCATCTCAGGACCCCTGATTCCTGAACTGGGCCAACTGAAGAGCCTTCGGTACC
TGTAAGTTCTACTGCAACTTGCTGCAGAGTGCAGACCTGCCAAATTACACTCGAAGTTTCC------TACAGAATGACCT
TCTCATCTTCATAGGGAGTTGTATGCATAGTTTTAAATAGCCGGCTATAGCCCCGCTATAGCCTTTTTAGCAGGGTGCCG
CTAAATGGTCTCATGTACAAATAGCCCGCTATAGCTCCGTTATAGCTGATTTGGAGGTCTGCCGCTATTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GGAGAACATGCTGACCGGCACGGTGCCGCTGGAGGTCCTCTCTCTTGTTCTTGTCGG
AGACATGACTAAGCTGTGAGTAG------TACATACAGTTCGTTTCACACAGC------ACAAATTGCATTTAGTTTCTT
CCTTCC----CCAATGACTTCCCATTGACGCG-ATATTTTTTATCATT----GCACAGAAATGTCATGAAAAATAATCTA
GCCGGCACTGCCAGATCATCTAAAACAAGAGGTTGGGATGCATTTTATTTTTGTGTGTGAGTGTGTGACATGT-------
---ATATATAGCTATAGGTTTTAATC--TGTGCTCACAAGAATTTTCCAACTGGCATCTTTTGTAGTGGCTACGGTCATC
CAGGACACGCTCGAGTGAAGACTACAAGTTAAGCAGTAGTGACAACCTCAACTTGTGCAAAAATAAACTGAATGATGATT
GCTCTTTCTGAAACTGCTGGTAGTAGCTG--------------------CATG---------------------------
----------------CTTACCTCCGTTTCAACAAGGAAAAAAAGAGAAAGTTGGGTGTGTGTCCACTGTAATCAGTAGC
AACATTAAAATAATGAATCCTTCTGTGCACATTTACC-------------------------------------------
--------------------------------------------------------------------------------
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>chr3B_1428
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---------------------------------------------------------------TACTTGTGCTCTTCCTC
ACTGTGCAGGGATTTGGGGAACGCAGGCATCTCGGGCACCCTGATTCCTCAACTGGGACAACTGAAGAACCTGCAGTACC
TGTAAGAACTAGTACAACTTGCTGCAGAGTCCAGACTTGCCAAATTACAGTCAAAACTTTC------TACAAAATGATCT
TCTCGTGGTCATAGAGAGCTGTACGCGAACAATATGAGTGGATCAATACCAACAACTCTGGGCAACCTGACACTCCTGAT
CAGCCTCGATCTTTACAACAACCATCTCACCGGCGTGATACCTTCCTCGCTTGGGGCAGTCGGGACACAGCGTTTCCTGT
ACGAGTCTCTTTGCAACAA-----TTTCCAAATGATGAGATGCTGAAATGCCTATTGATTGTCTCCAACTGCTAGAGGCT
ATTCGTTGGTGTCTCCCTGCAGGAGGCTGCATGGGAACAAACTGGCAGGGGGTATACTGGCGTCATTGGGCCGTCTGATG
AAGCTTGTCGAGCTGGAGCTTCAGGAGAATACGCTGACCGGCACGGTGCCGCTGGAGGTCCTATCTCTTGTTCTTGTCGG
GGACTTGACTGAACTGTGAGTAGTGCA----------GTTTGTTTTACA--CCAGAAATAGAAATTGCATCCACTTCTTT
CCTTCCTTTCCCAGTGGCT----TTCACTTACAATATATTTTTCCATC----CCGCAGAAATGTTGTGCAAAACAATTTG
GCTGGCACTGTTAAATCATCTACACAAAGAGGTAGGGATCCAT-------------------------------------
--------------------------------------------------------------------------------
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>chr3B_1441
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----------------------------------------------------------------------------CCTG
ACTGTGCAGAGATTTGCTGGATGCAGGCATCTCGGGCACCCTGATCCCTGAGCTGGGAGGACTGAAGAACCTTCAGTACC
TGTAAGTACTATTGCGACTTGCGGCAGAGTGCAAACTTGTCAAATTGCACCTGGAATTTCA------TGCAGAATGATCT
TACCATCTTCACAGGGAGCTTTTTACGAACAACATTAGTGGATCCATACCAACAACCCTCGGCAACCTGACAAGCCTGGT
CACCCTTGATCTCTACGACAACCTTCTCACCAGCGCTATACCGGCCTCGCTCGCCAACATCAGGACACTGCGTTTTCTGT
ATGAATCTTGCTGCAGCAA-----TTTTCAGTTGAAGAGATGCTAAAATGCCTATT---TGTCTCCAACTACTTAAAACA
ACATGTTGGTGTC----TGCAGGAGGCTGTATCGGAATAAACTGTTAGGAGGTATACCCGCACGGCTGTGCCGTCTGACG
AAGCTTGTGAAGTTGAATCTTGAGGATAACATGCTGACTGGCACGGTGCCGCTGGAGGTCCTCTCTCTTCTTCTCGTCGG
GGACTTGGCTGAACTGTGAGTAGTACA--TACATACAGTTCATTCCACACACC------ACAC--TCCATTTACTTTCTT
CCTTCCTTCACGAGTGACT----TCCGCTGACACAACTTTCTATCTTC----ACGTAGAAATGTTGCGAACAACAATCTT
GCCGGCACTGTACAATCATCTGAACCAAGAACTAGGGATGTTTTTATTTTATAGTACTATTTTTTGCGTGTACAATGCAA
TGCATGTATAG-----GGTCTGGTGCTTTGTGCTCACGAGAATTTTCCTATTAGCATTATTTGCAGTGGCTGTGGTCATC
CAGTACGCGCTCAAG-----ACTACAGGCTGAGCACTACTGGTAACCTGAACT---GTAAGAGTAAACAGAAAGATTTTT
---CC---------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------
>SNPs
--------------S-----------------------------------------------------------------
-------------------------------------S------------------------------------S-----
------------------------------------SSSS--------------------------S-------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
----------------------------------------------S-----------SS--------------------
------SS------S--S-------------------------------SS-----------------------------
---S-----S------------S---------------------------------------------------------
--------S-------------------------S---------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------SSSSSS------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S------------------------------------------S-------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
--------S---------------------------S-------------------------------------------
---------------------------------------------------S-S--------------------------
---------------------------------------------S----------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
---S--------------------------S-------------------------------------------------
----------------------S---------------------------------------------------------
-------------------S---------------------S-------------------------S------------
-------------------------------------------------------S------------------------
----------------------S---------------------S----------S--------------S---------
--------------------S------------------S--------------------------S-------------
-----------------------S----------SSSS--------------------------S--------S------
--------------------------------------------------------------------S-----------
-------SS--------------------------------------------------------S----S-S-------
-----------------------------------------------SS---------------S----------S----
-S-----------------------------SSSS---S--S----S---------------------------------
-----------S-S-----SSS---S-------S----------------------------------------------
----------------------------S--------------S------------------------------------
---------------S-----------------------------------------------S----------------
--------------------------------------------------------------------------------
-----S--------------------S--------------S--------------------------------------
-----S-------------------------------S-------------------------SS----------S-SS-
S----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
------S--------------------------------S----------
>forward_835
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CAAAGAACATGAGCCGCGG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_3238
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGGCAAACTGAACATGCAGC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
