Multiple sequence alignment - TraesCS3D01G467300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G467300 chr3D 100.000 3212 0 0 1 3212 570280041 570283252 0.000000e+00 5932.0
1 TraesCS3D01G467300 chr3D 95.015 1625 61 11 981 2590 570328412 570330031 0.000000e+00 2534.0
2 TraesCS3D01G467300 chr3D 92.724 1237 81 5 966 2200 570379555 570380784 0.000000e+00 1777.0
3 TraesCS3D01G467300 chr3D 90.331 1117 101 2 1088 2200 570311115 570312228 0.000000e+00 1458.0
4 TraesCS3D01G467300 chr3D 80.131 1223 200 31 992 2185 570496394 570495186 0.000000e+00 872.0
5 TraesCS3D01G467300 chr3D 89.211 621 52 10 2595 3206 570330112 570330726 0.000000e+00 761.0
6 TraesCS3D01G467300 chr3D 88.557 201 22 1 3013 3212 199249984 199250184 3.200000e-60 243.0
7 TraesCS3D01G467300 chr3D 88.482 191 19 2 3016 3205 324612788 324612600 8.960000e-56 228.0
8 TraesCS3D01G467300 chr3D 97.143 35 1 0 217 251 66556786 66556752 3.460000e-05 60.2
9 TraesCS3D01G467300 chr3D 100.000 28 0 0 2609 2636 64418032 64418005 6.000000e-03 52.8
10 TraesCS3D01G467300 chr3B 91.571 1922 91 20 577 2487 757472472 757474333 0.000000e+00 2586.0
11 TraesCS3D01G467300 chr3B 92.062 1222 90 3 983 2200 757708069 757709287 0.000000e+00 1712.0
12 TraesCS3D01G467300 chr3B 88.003 1342 130 12 869 2200 757498176 757499496 0.000000e+00 1557.0
13 TraesCS3D01G467300 chr3B 84.401 1218 142 27 992 2172 757734142 757735348 0.000000e+00 1153.0
14 TraesCS3D01G467300 chr3B 76.111 360 54 16 2657 3012 440232834 440232503 3.320000e-35 159.0
15 TraesCS3D01G467300 chr3B 88.136 118 8 3 572 687 757707698 757707811 5.590000e-28 135.0
16 TraesCS3D01G467300 chr3A 95.758 1556 51 9 836 2384 703170629 703172176 0.000000e+00 2494.0
17 TraesCS3D01G467300 chr3A 91.698 1313 80 13 979 2267 703203802 703205109 0.000000e+00 1794.0
18 TraesCS3D01G467300 chr3A 83.876 614 61 15 2595 3206 703174193 703174770 4.680000e-153 551.0
19 TraesCS3D01G467300 chr3A 91.429 210 18 0 2381 2590 703173903 703174112 4.050000e-74 289.0
20 TraesCS3D01G467300 chr3A 82.748 313 23 8 499 783 703170177 703170486 1.910000e-62 250.0
21 TraesCS3D01G467300 chr3A 100.000 42 0 0 797 838 703170573 703170614 9.550000e-11 78.7
22 TraesCS3D01G467300 chr3A 100.000 28 0 0 2609 2636 625566917 625566890 6.000000e-03 52.8
23 TraesCS3D01G467300 chrUn 91.053 190 16 1 3017 3205 351921697 351921508 4.110000e-64 255.0
24 TraesCS3D01G467300 chr7B 89.604 202 19 2 3012 3212 538871269 538871069 4.110000e-64 255.0
25 TraesCS3D01G467300 chr4B 90.256 195 18 1 3017 3210 518626925 518626731 1.480000e-63 254.0
26 TraesCS3D01G467300 chr2D 90.110 182 17 1 3016 3196 560994221 560994040 5.360000e-58 235.0
27 TraesCS3D01G467300 chr5B 86.294 197 25 2 3017 3212 494298978 494299173 2.510000e-51 213.0
28 TraesCS3D01G467300 chr4A 77.955 313 38 15 2661 2972 646904098 646904380 1.980000e-37 167.0
29 TraesCS3D01G467300 chr6A 81.122 196 35 2 2819 3012 586317 586122 4.290000e-34 156.0
30 TraesCS3D01G467300 chr6D 100.000 28 0 0 2609 2636 328615152 328615179 6.000000e-03 52.8
31 TraesCS3D01G467300 chr2A 100.000 28 0 0 2608 2635 737479258 737479231 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G467300 chr3D 570280041 570283252 3211 False 5932.00 5932 100.0000 1 3212 1 chr3D.!!$F2 3211
1 TraesCS3D01G467300 chr3D 570379555 570380784 1229 False 1777.00 1777 92.7240 966 2200 1 chr3D.!!$F4 1234
2 TraesCS3D01G467300 chr3D 570328412 570330726 2314 False 1647.50 2534 92.1130 981 3206 2 chr3D.!!$F5 2225
3 TraesCS3D01G467300 chr3D 570311115 570312228 1113 False 1458.00 1458 90.3310 1088 2200 1 chr3D.!!$F3 1112
4 TraesCS3D01G467300 chr3D 570495186 570496394 1208 True 872.00 872 80.1310 992 2185 1 chr3D.!!$R4 1193
5 TraesCS3D01G467300 chr3B 757472472 757474333 1861 False 2586.00 2586 91.5710 577 2487 1 chr3B.!!$F1 1910
6 TraesCS3D01G467300 chr3B 757498176 757499496 1320 False 1557.00 1557 88.0030 869 2200 1 chr3B.!!$F2 1331
7 TraesCS3D01G467300 chr3B 757734142 757735348 1206 False 1153.00 1153 84.4010 992 2172 1 chr3B.!!$F3 1180
8 TraesCS3D01G467300 chr3B 757707698 757709287 1589 False 923.50 1712 90.0990 572 2200 2 chr3B.!!$F4 1628
9 TraesCS3D01G467300 chr3A 703203802 703205109 1307 False 1794.00 1794 91.6980 979 2267 1 chr3A.!!$F1 1288
10 TraesCS3D01G467300 chr3A 703170177 703174770 4593 False 732.54 2494 90.7622 499 3206 5 chr3A.!!$F2 2707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 448 0.179163 GGCCAACTAAACATGCGAGC 60.179 55.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 2539 0.034896 AACCAGAATTGACGGACGCT 59.965 50.0 0.0 0.0 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.772973 TTAACTAGCTACTTGATGTTTTTCTCA 57.227 29.630 0.00 0.00 0.00 3.27
31 32 8.854614 AACTAGCTACTTGATGTTTTTCTCAT 57.145 30.769 0.00 0.00 0.00 2.90
32 33 9.944376 AACTAGCTACTTGATGTTTTTCTCATA 57.056 29.630 0.00 0.00 0.00 2.15
33 34 9.372369 ACTAGCTACTTGATGTTTTTCTCATAC 57.628 33.333 0.00 0.00 0.00 2.39
34 35 9.593134 CTAGCTACTTGATGTTTTTCTCATACT 57.407 33.333 0.00 0.00 0.00 2.12
35 36 8.854614 AGCTACTTGATGTTTTTCTCATACTT 57.145 30.769 0.00 0.00 0.00 2.24
36 37 9.289782 AGCTACTTGATGTTTTTCTCATACTTT 57.710 29.630 0.00 0.00 0.00 2.66
37 38 9.899226 GCTACTTGATGTTTTTCTCATACTTTT 57.101 29.630 0.00 0.00 0.00 2.27
72 73 7.628769 AAAAATTCAGAAATTTGTTGGCTGT 57.371 28.000 0.00 0.00 42.82 4.40
73 74 6.849588 AAATTCAGAAATTTGTTGGCTGTC 57.150 33.333 0.00 0.00 42.21 3.51
74 75 5.796424 ATTCAGAAATTTGTTGGCTGTCT 57.204 34.783 0.00 0.00 0.00 3.41
75 76 4.572985 TCAGAAATTTGTTGGCTGTCTG 57.427 40.909 0.00 0.00 33.82 3.51
76 77 3.318839 TCAGAAATTTGTTGGCTGTCTGG 59.681 43.478 0.00 0.00 33.45 3.86
77 78 3.068590 CAGAAATTTGTTGGCTGTCTGGT 59.931 43.478 0.00 0.00 0.00 4.00
78 79 4.278170 CAGAAATTTGTTGGCTGTCTGGTA 59.722 41.667 0.00 0.00 0.00 3.25
79 80 4.892934 AGAAATTTGTTGGCTGTCTGGTAA 59.107 37.500 0.00 0.00 0.00 2.85
80 81 5.362430 AGAAATTTGTTGGCTGTCTGGTAAA 59.638 36.000 0.00 0.00 0.00 2.01
81 82 5.606348 AATTTGTTGGCTGTCTGGTAAAA 57.394 34.783 0.00 0.00 0.00 1.52
82 83 5.606348 ATTTGTTGGCTGTCTGGTAAAAA 57.394 34.783 0.00 0.00 0.00 1.94
110 111 9.846248 AATCTGTGTCTATTAAAAATGTTGAGC 57.154 29.630 0.00 0.00 0.00 4.26
111 112 8.389779 TCTGTGTCTATTAAAAATGTTGAGCA 57.610 30.769 0.00 0.00 0.00 4.26
112 113 9.013229 TCTGTGTCTATTAAAAATGTTGAGCAT 57.987 29.630 0.00 0.00 40.03 3.79
171 172 9.936759 AAATTCACCTTGTAAAAGAAAAGTTCA 57.063 25.926 0.00 0.00 0.00 3.18
172 173 8.926715 ATTCACCTTGTAAAAGAAAAGTTCAC 57.073 30.769 0.00 0.00 0.00 3.18
173 174 6.859017 TCACCTTGTAAAAGAAAAGTTCACC 58.141 36.000 0.00 0.00 0.00 4.02
174 175 6.434652 TCACCTTGTAAAAGAAAAGTTCACCA 59.565 34.615 0.00 0.00 0.00 4.17
175 176 7.123547 TCACCTTGTAAAAGAAAAGTTCACCAT 59.876 33.333 0.00 0.00 0.00 3.55
176 177 8.410141 CACCTTGTAAAAGAAAAGTTCACCATA 58.590 33.333 0.00 0.00 0.00 2.74
177 178 8.630037 ACCTTGTAAAAGAAAAGTTCACCATAG 58.370 33.333 0.00 0.00 0.00 2.23
178 179 8.082242 CCTTGTAAAAGAAAAGTTCACCATAGG 58.918 37.037 0.00 0.00 0.00 2.57
179 180 8.528044 TTGTAAAAGAAAAGTTCACCATAGGT 57.472 30.769 0.00 0.00 35.62 3.08
180 181 8.528044 TGTAAAAGAAAAGTTCACCATAGGTT 57.472 30.769 0.00 0.00 31.02 3.50
181 182 9.629878 TGTAAAAGAAAAGTTCACCATAGGTTA 57.370 29.630 0.00 0.00 31.02 2.85
182 183 9.888878 GTAAAAGAAAAGTTCACCATAGGTTAC 57.111 33.333 0.00 0.00 31.02 2.50
183 184 8.528044 AAAAGAAAAGTTCACCATAGGTTACA 57.472 30.769 0.00 0.00 31.02 2.41
184 185 8.528044 AAAGAAAAGTTCACCATAGGTTACAA 57.472 30.769 0.00 0.00 31.02 2.41
185 186 8.528044 AAGAAAAGTTCACCATAGGTTACAAA 57.472 30.769 0.00 0.00 31.02 2.83
186 187 8.528044 AGAAAAGTTCACCATAGGTTACAAAA 57.472 30.769 0.00 0.00 31.02 2.44
187 188 8.973182 AGAAAAGTTCACCATAGGTTACAAAAA 58.027 29.630 0.00 0.00 31.02 1.94
213 214 9.846248 AAAGCTCATCATACATTACAAAAGTTC 57.154 29.630 0.00 0.00 0.00 3.01
214 215 8.565896 AGCTCATCATACATTACAAAAGTTCA 57.434 30.769 0.00 0.00 0.00 3.18
215 216 8.454106 AGCTCATCATACATTACAAAAGTTCAC 58.546 33.333 0.00 0.00 0.00 3.18
216 217 8.454106 GCTCATCATACATTACAAAAGTTCACT 58.546 33.333 0.00 0.00 0.00 3.41
336 337 8.507470 AAAAATAAAAGCAAAAACAAAACGCA 57.493 23.077 0.00 0.00 0.00 5.24
337 338 8.507470 AAAATAAAAGCAAAAACAAAACGCAA 57.493 23.077 0.00 0.00 0.00 4.85
339 340 4.999751 AAAGCAAAAACAAAACGCAAGA 57.000 31.818 0.00 0.00 43.62 3.02
340 341 4.999751 AAGCAAAAACAAAACGCAAGAA 57.000 31.818 0.00 0.00 43.62 2.52
341 342 4.999751 AGCAAAAACAAAACGCAAGAAA 57.000 31.818 0.00 0.00 43.62 2.52
342 343 5.544136 AGCAAAAACAAAACGCAAGAAAT 57.456 30.435 0.00 0.00 43.62 2.17
343 344 6.654793 AGCAAAAACAAAACGCAAGAAATA 57.345 29.167 0.00 0.00 43.62 1.40
344 345 7.066374 AGCAAAAACAAAACGCAAGAAATAA 57.934 28.000 0.00 0.00 43.62 1.40
345 346 7.179410 AGCAAAAACAAAACGCAAGAAATAAG 58.821 30.769 0.00 0.00 43.62 1.73
346 347 7.064016 AGCAAAAACAAAACGCAAGAAATAAGA 59.936 29.630 0.00 0.00 43.62 2.10
347 348 7.690224 GCAAAAACAAAACGCAAGAAATAAGAA 59.310 29.630 0.00 0.00 43.62 2.52
348 349 9.535270 CAAAAACAAAACGCAAGAAATAAGAAA 57.465 25.926 0.00 0.00 43.62 2.52
350 351 9.753669 AAAACAAAACGCAAGAAATAAGAAAAG 57.246 25.926 0.00 0.00 43.62 2.27
351 352 8.696410 AACAAAACGCAAGAAATAAGAAAAGA 57.304 26.923 0.00 0.00 43.62 2.52
352 353 8.696410 ACAAAACGCAAGAAATAAGAAAAGAA 57.304 26.923 0.00 0.00 43.62 2.52
353 354 9.145865 ACAAAACGCAAGAAATAAGAAAAGAAA 57.854 25.926 0.00 0.00 43.62 2.52
430 431 4.672587 AAAAGAAAGGAAAAGGAGTGGC 57.327 40.909 0.00 0.00 0.00 5.01
431 432 2.294449 AGAAAGGAAAAGGAGTGGCC 57.706 50.000 0.00 0.00 0.00 5.36
432 433 1.499007 AGAAAGGAAAAGGAGTGGCCA 59.501 47.619 0.00 0.00 40.02 5.36
433 434 2.091333 AGAAAGGAAAAGGAGTGGCCAA 60.091 45.455 7.24 0.00 40.02 4.52
434 435 1.704641 AAGGAAAAGGAGTGGCCAAC 58.295 50.000 7.24 4.53 40.02 3.77
435 436 0.853530 AGGAAAAGGAGTGGCCAACT 59.146 50.000 7.24 7.38 43.85 3.16
436 437 2.062636 AGGAAAAGGAGTGGCCAACTA 58.937 47.619 7.24 0.00 40.07 2.24
437 438 2.445525 AGGAAAAGGAGTGGCCAACTAA 59.554 45.455 7.24 0.00 40.07 2.24
438 439 3.117284 AGGAAAAGGAGTGGCCAACTAAA 60.117 43.478 7.24 0.00 40.07 1.85
439 440 3.005472 GGAAAAGGAGTGGCCAACTAAAC 59.995 47.826 7.24 0.00 40.07 2.01
440 441 3.306472 AAAGGAGTGGCCAACTAAACA 57.694 42.857 7.24 0.00 40.07 2.83
441 442 3.525800 AAGGAGTGGCCAACTAAACAT 57.474 42.857 7.24 0.00 40.07 2.71
442 443 2.795329 AGGAGTGGCCAACTAAACATG 58.205 47.619 7.24 0.00 40.07 3.21
443 444 1.202348 GGAGTGGCCAACTAAACATGC 59.798 52.381 7.24 0.00 40.07 4.06
444 445 0.881118 AGTGGCCAACTAAACATGCG 59.119 50.000 7.24 0.00 37.36 4.73
445 446 0.878416 GTGGCCAACTAAACATGCGA 59.122 50.000 7.24 0.00 0.00 5.10
446 447 1.135689 GTGGCCAACTAAACATGCGAG 60.136 52.381 7.24 0.00 0.00 5.03
447 448 0.179163 GGCCAACTAAACATGCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
448 449 0.521291 GCCAACTAAACATGCGAGCA 59.479 50.000 0.00 0.00 0.00 4.26
449 450 1.133025 GCCAACTAAACATGCGAGCAT 59.867 47.619 4.52 4.52 37.08 3.79
450 451 2.415893 GCCAACTAAACATGCGAGCATT 60.416 45.455 7.97 0.00 33.90 3.56
451 452 3.836949 CCAACTAAACATGCGAGCATTT 58.163 40.909 7.97 4.98 33.90 2.32
452 453 4.236935 CCAACTAAACATGCGAGCATTTT 58.763 39.130 7.97 13.42 33.90 1.82
453 454 4.685628 CCAACTAAACATGCGAGCATTTTT 59.314 37.500 21.01 21.01 39.01 1.94
476 477 9.522804 TTTTTAATAGTTTTCGTTGCAATGAGT 57.477 25.926 20.09 9.97 0.00 3.41
477 478 9.522804 TTTTAATAGTTTTCGTTGCAATGAGTT 57.477 25.926 20.09 10.44 0.00 3.01
479 480 9.820229 TTAATAGTTTTCGTTGCAATGAGTTAG 57.180 29.630 20.09 0.00 0.00 2.34
480 481 5.751243 AGTTTTCGTTGCAATGAGTTAGT 57.249 34.783 20.09 10.37 0.00 2.24
481 482 5.748592 AGTTTTCGTTGCAATGAGTTAGTC 58.251 37.500 20.09 9.81 0.00 2.59
482 483 5.527582 AGTTTTCGTTGCAATGAGTTAGTCT 59.472 36.000 20.09 11.55 0.00 3.24
483 484 6.704493 AGTTTTCGTTGCAATGAGTTAGTCTA 59.296 34.615 20.09 1.59 0.00 2.59
484 485 6.462073 TTTCGTTGCAATGAGTTAGTCTAC 57.538 37.500 20.09 0.00 0.00 2.59
485 486 5.386958 TCGTTGCAATGAGTTAGTCTACT 57.613 39.130 17.41 0.00 0.00 2.57
486 487 5.779922 TCGTTGCAATGAGTTAGTCTACTT 58.220 37.500 17.41 0.00 0.00 2.24
487 488 6.220930 TCGTTGCAATGAGTTAGTCTACTTT 58.779 36.000 17.41 0.00 0.00 2.66
488 489 6.704493 TCGTTGCAATGAGTTAGTCTACTTTT 59.296 34.615 17.41 0.00 0.00 2.27
489 490 7.010023 CGTTGCAATGAGTTAGTCTACTTTTC 58.990 38.462 13.63 0.00 0.00 2.29
490 491 7.298854 GTTGCAATGAGTTAGTCTACTTTTCC 58.701 38.462 0.59 0.00 0.00 3.13
491 492 6.530120 TGCAATGAGTTAGTCTACTTTTCCA 58.470 36.000 0.00 0.00 0.00 3.53
492 493 7.168219 TGCAATGAGTTAGTCTACTTTTCCAT 58.832 34.615 0.00 0.00 0.00 3.41
493 494 8.318412 TGCAATGAGTTAGTCTACTTTTCCATA 58.682 33.333 0.00 0.00 0.00 2.74
494 495 9.331282 GCAATGAGTTAGTCTACTTTTCCATAT 57.669 33.333 0.00 0.00 0.00 1.78
504 505 9.959721 AGTCTACTTTTCCATATACACAAACAT 57.040 29.630 0.00 0.00 0.00 2.71
511 512 9.438228 TTTTCCATATACACAAACATACTCGAA 57.562 29.630 0.00 0.00 0.00 3.71
539 541 5.772521 CTGCACTATTTTTACTGCCTTTGT 58.227 37.500 0.00 0.00 0.00 2.83
561 563 8.829514 TTGTTATACGAACAACACAAAAGAAG 57.170 30.769 0.00 0.00 35.45 2.85
581 605 5.692204 AGAAGACGTGTGAGAATGTTGTAAG 59.308 40.000 0.00 0.00 0.00 2.34
633 657 0.895559 TCGCAGCAGGAGAGAAGTGA 60.896 55.000 0.00 0.00 0.00 3.41
638 662 3.737663 GCAGCAGGAGAGAAGTGATAGTG 60.738 52.174 0.00 0.00 0.00 2.74
701 725 1.512156 GGAAGCGGCGAGAAAACCAA 61.512 55.000 12.98 0.00 0.00 3.67
705 729 1.339929 AGCGGCGAGAAAACCAAAAAT 59.660 42.857 12.98 0.00 0.00 1.82
947 1082 2.846652 GCGTCGATCCGGACATCCT 61.847 63.158 6.12 0.00 36.73 3.24
948 1083 1.283181 CGTCGATCCGGACATCCTC 59.717 63.158 6.12 0.00 36.73 3.71
949 1084 1.660917 GTCGATCCGGACATCCTCC 59.339 63.158 6.12 0.00 36.91 4.30
978 1118 2.788786 CACTCACAAAACAATTCCACGC 59.211 45.455 0.00 0.00 0.00 5.34
979 1119 2.687935 ACTCACAAAACAATTCCACGCT 59.312 40.909 0.00 0.00 0.00 5.07
980 1120 3.243068 ACTCACAAAACAATTCCACGCTC 60.243 43.478 0.00 0.00 0.00 5.03
1017 1161 1.748122 GATGCCACCAGTGCTCCTG 60.748 63.158 0.00 0.00 41.15 3.86
1386 1545 2.672996 GCAGCCAACACCACCGAT 60.673 61.111 0.00 0.00 0.00 4.18
1416 1575 1.831389 CGGTGAGCAAGGTGAACGTG 61.831 60.000 0.00 0.00 0.00 4.49
1548 1711 3.353836 GCGCAGAAGGTCGCCAAA 61.354 61.111 0.30 0.00 45.01 3.28
1683 1869 4.489771 GGCAGCCCCGCACACTAT 62.490 66.667 0.00 0.00 0.00 2.12
2275 2485 8.588290 TGCATGTAATAAATAAGGGAAACACT 57.412 30.769 0.00 0.00 0.00 3.55
2276 2486 8.682710 TGCATGTAATAAATAAGGGAAACACTC 58.317 33.333 0.00 0.00 0.00 3.51
2277 2487 8.903820 GCATGTAATAAATAAGGGAAACACTCT 58.096 33.333 0.00 0.00 0.00 3.24
2307 2526 6.899393 TCAATGGTCTGATAAAAAGCAGTT 57.101 33.333 0.00 0.00 33.90 3.16
2320 2539 9.547753 GATAAAAAGCAGTTATCAGACCTATCA 57.452 33.333 8.41 0.00 37.72 2.15
2330 2549 0.393944 AGACCTATCAGCGTCCGTCA 60.394 55.000 0.00 0.00 0.00 4.35
2384 4333 1.456296 ATCCGGTCGCCCTTTAAAAC 58.544 50.000 0.00 0.00 0.00 2.43
2413 4362 2.611751 TCATTCGTAATGACCCGCATTG 59.388 45.455 0.00 0.00 46.38 2.82
2415 4364 0.250793 TCGTAATGACCCGCATTGGT 59.749 50.000 0.00 0.00 46.38 3.67
2455 4404 1.633774 ATCTCCCGCACGAATATCCT 58.366 50.000 0.00 0.00 0.00 3.24
2586 4543 3.060000 ATCCACGCGTCCTCGTCA 61.060 61.111 9.86 0.00 41.21 4.35
2590 4547 4.353437 ACGCGTCCTCGTCAACCC 62.353 66.667 5.58 0.00 38.44 4.11
2593 4550 3.677648 CGTCCTCGTCAACCCCGT 61.678 66.667 0.00 0.00 0.00 5.28
2637 4673 6.973460 TTTTTAACCGATCCCCTAAAAACA 57.027 33.333 8.23 0.00 31.58 2.83
2702 4740 2.820037 GACAACCCTAGCCGCTGC 60.820 66.667 2.16 0.00 37.95 5.25
2703 4741 3.605749 GACAACCCTAGCCGCTGCA 62.606 63.158 2.16 0.00 41.13 4.41
2713 4751 2.124151 CCGCTGCATTTAGCCCCT 60.124 61.111 0.00 0.00 44.83 4.79
2715 4753 1.322538 CCGCTGCATTTAGCCCCTTT 61.323 55.000 0.00 0.00 44.83 3.11
2727 4765 1.230314 CCCCTTTCCCTCCCTTCCT 60.230 63.158 0.00 0.00 0.00 3.36
2737 4775 0.547712 CTCCCTTCCTCACCCCTTCA 60.548 60.000 0.00 0.00 0.00 3.02
2739 4777 0.842467 CCCTTCCTCACCCCTTCACT 60.842 60.000 0.00 0.00 0.00 3.41
2741 4779 1.059913 CTTCCTCACCCCTTCACTGT 58.940 55.000 0.00 0.00 0.00 3.55
2745 4783 1.821061 CTCACCCCTTCACTGTCGCT 61.821 60.000 0.00 0.00 0.00 4.93
2790 4828 2.586792 GCTCCGATGAAGGTGGCT 59.413 61.111 0.00 0.00 0.00 4.75
2942 4980 4.430765 CGGGTAGCGCGAAGGTGT 62.431 66.667 12.10 0.00 42.31 4.16
2951 4989 2.732016 CGAAGGTGTCGGGTGTCA 59.268 61.111 0.00 0.00 46.45 3.58
3013 5052 2.095252 GGCGTCCTCAACTTCGAGC 61.095 63.158 0.00 0.00 0.00 5.03
3090 5130 4.781775 TGGTGGTCCTAAAAGTTTCTGA 57.218 40.909 0.00 0.00 34.23 3.27
3121 5161 7.709613 TGTCACTTTAGTCCTACTTCTTTCAAC 59.290 37.037 0.00 0.00 0.00 3.18
3163 5203 1.899814 CTACAGTAAGTGGCTCACCCA 59.100 52.381 2.18 0.00 42.79 4.51
3180 5220 1.339610 CCCAACATCCTTTTTCGCACA 59.660 47.619 0.00 0.00 0.00 4.57
3211 5251 3.204505 CCTGCTTGGTTGCATGTTG 57.795 52.632 0.00 0.00 42.48 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.772973 TGAGAAAAACATCAAGTAGCTAGTTAA 57.227 29.630 13.46 0.00 0.00 2.01
6 7 8.854614 ATGAGAAAAACATCAAGTAGCTAGTT 57.145 30.769 8.06 8.06 0.00 2.24
7 8 9.372369 GTATGAGAAAAACATCAAGTAGCTAGT 57.628 33.333 0.00 0.00 0.00 2.57
8 9 9.593134 AGTATGAGAAAAACATCAAGTAGCTAG 57.407 33.333 0.00 0.00 0.00 3.42
9 10 9.944376 AAGTATGAGAAAAACATCAAGTAGCTA 57.056 29.630 0.00 0.00 0.00 3.32
10 11 8.854614 AAGTATGAGAAAAACATCAAGTAGCT 57.145 30.769 0.00 0.00 0.00 3.32
11 12 9.899226 AAAAGTATGAGAAAAACATCAAGTAGC 57.101 29.630 0.00 0.00 0.00 3.58
48 49 7.553760 AGACAGCCAACAAATTTCTGAATTTTT 59.446 29.630 9.99 1.48 42.14 1.94
49 50 7.011669 CAGACAGCCAACAAATTTCTGAATTTT 59.988 33.333 9.99 4.84 42.14 1.82
50 51 6.480981 CAGACAGCCAACAAATTTCTGAATTT 59.519 34.615 9.99 0.00 44.24 1.82
51 52 5.987347 CAGACAGCCAACAAATTTCTGAATT 59.013 36.000 9.99 0.00 37.06 2.17
52 53 5.510179 CCAGACAGCCAACAAATTTCTGAAT 60.510 40.000 9.99 0.00 32.42 2.57
53 54 4.202141 CCAGACAGCCAACAAATTTCTGAA 60.202 41.667 9.99 0.00 32.42 3.02
54 55 3.318839 CCAGACAGCCAACAAATTTCTGA 59.681 43.478 9.99 0.00 32.42 3.27
55 56 3.068590 ACCAGACAGCCAACAAATTTCTG 59.931 43.478 3.06 3.06 0.00 3.02
56 57 3.299503 ACCAGACAGCCAACAAATTTCT 58.700 40.909 0.00 0.00 0.00 2.52
57 58 3.733443 ACCAGACAGCCAACAAATTTC 57.267 42.857 0.00 0.00 0.00 2.17
58 59 5.606348 TTTACCAGACAGCCAACAAATTT 57.394 34.783 0.00 0.00 0.00 1.82
59 60 5.606348 TTTTACCAGACAGCCAACAAATT 57.394 34.783 0.00 0.00 0.00 1.82
60 61 5.606348 TTTTTACCAGACAGCCAACAAAT 57.394 34.783 0.00 0.00 0.00 2.32
84 85 9.846248 GCTCAACATTTTTAATAGACACAGATT 57.154 29.630 0.00 0.00 0.00 2.40
85 86 9.013229 TGCTCAACATTTTTAATAGACACAGAT 57.987 29.630 0.00 0.00 0.00 2.90
86 87 8.389779 TGCTCAACATTTTTAATAGACACAGA 57.610 30.769 0.00 0.00 0.00 3.41
145 146 9.936759 TGAACTTTTCTTTTACAAGGTGAATTT 57.063 25.926 0.00 0.00 0.00 1.82
146 147 9.366216 GTGAACTTTTCTTTTACAAGGTGAATT 57.634 29.630 0.00 0.00 0.00 2.17
147 148 7.979537 GGTGAACTTTTCTTTTACAAGGTGAAT 59.020 33.333 0.00 0.00 0.00 2.57
148 149 7.039644 TGGTGAACTTTTCTTTTACAAGGTGAA 60.040 33.333 0.00 0.00 0.00 3.18
149 150 6.434652 TGGTGAACTTTTCTTTTACAAGGTGA 59.565 34.615 0.00 0.00 0.00 4.02
150 151 6.626302 TGGTGAACTTTTCTTTTACAAGGTG 58.374 36.000 0.00 0.00 0.00 4.00
151 152 6.844097 TGGTGAACTTTTCTTTTACAAGGT 57.156 33.333 0.00 0.00 0.00 3.50
152 153 8.082242 CCTATGGTGAACTTTTCTTTTACAAGG 58.918 37.037 0.00 0.00 0.00 3.61
153 154 8.630037 ACCTATGGTGAACTTTTCTTTTACAAG 58.370 33.333 0.00 0.00 32.98 3.16
154 155 8.528044 ACCTATGGTGAACTTTTCTTTTACAA 57.472 30.769 0.00 0.00 32.98 2.41
155 156 8.528044 AACCTATGGTGAACTTTTCTTTTACA 57.472 30.769 0.00 0.00 35.34 2.41
156 157 9.888878 GTAACCTATGGTGAACTTTTCTTTTAC 57.111 33.333 0.00 0.00 35.34 2.01
157 158 9.629878 TGTAACCTATGGTGAACTTTTCTTTTA 57.370 29.630 0.00 0.00 35.34 1.52
158 159 8.528044 TGTAACCTATGGTGAACTTTTCTTTT 57.472 30.769 0.00 0.00 35.34 2.27
159 160 8.528044 TTGTAACCTATGGTGAACTTTTCTTT 57.472 30.769 0.00 0.00 35.34 2.52
160 161 8.528044 TTTGTAACCTATGGTGAACTTTTCTT 57.472 30.769 0.00 0.00 35.34 2.52
161 162 8.528044 TTTTGTAACCTATGGTGAACTTTTCT 57.472 30.769 0.00 0.00 35.34 2.52
187 188 9.846248 GAACTTTTGTAATGTATGATGAGCTTT 57.154 29.630 0.00 0.00 0.00 3.51
188 189 9.013229 TGAACTTTTGTAATGTATGATGAGCTT 57.987 29.630 0.00 0.00 0.00 3.74
189 190 8.454106 GTGAACTTTTGTAATGTATGATGAGCT 58.546 33.333 0.00 0.00 0.00 4.09
190 191 8.454106 AGTGAACTTTTGTAATGTATGATGAGC 58.546 33.333 0.00 0.00 0.00 4.26
311 312 8.507470 TGCGTTTTGTTTTTGCTTTTATTTTT 57.493 23.077 0.00 0.00 0.00 1.94
312 313 8.507470 TTGCGTTTTGTTTTTGCTTTTATTTT 57.493 23.077 0.00 0.00 0.00 1.82
313 314 8.017946 TCTTGCGTTTTGTTTTTGCTTTTATTT 58.982 25.926 0.00 0.00 0.00 1.40
314 315 7.522374 TCTTGCGTTTTGTTTTTGCTTTTATT 58.478 26.923 0.00 0.00 0.00 1.40
315 316 7.066374 TCTTGCGTTTTGTTTTTGCTTTTAT 57.934 28.000 0.00 0.00 0.00 1.40
316 317 6.467723 TCTTGCGTTTTGTTTTTGCTTTTA 57.532 29.167 0.00 0.00 0.00 1.52
317 318 5.349824 TCTTGCGTTTTGTTTTTGCTTTT 57.650 30.435 0.00 0.00 0.00 2.27
318 319 4.999751 TCTTGCGTTTTGTTTTTGCTTT 57.000 31.818 0.00 0.00 0.00 3.51
319 320 4.999751 TTCTTGCGTTTTGTTTTTGCTT 57.000 31.818 0.00 0.00 0.00 3.91
320 321 4.999751 TTTCTTGCGTTTTGTTTTTGCT 57.000 31.818 0.00 0.00 0.00 3.91
321 322 7.176741 TCTTATTTCTTGCGTTTTGTTTTTGC 58.823 30.769 0.00 0.00 0.00 3.68
322 323 9.535270 TTTCTTATTTCTTGCGTTTTGTTTTTG 57.465 25.926 0.00 0.00 0.00 2.44
324 325 9.753669 CTTTTCTTATTTCTTGCGTTTTGTTTT 57.246 25.926 0.00 0.00 0.00 2.43
325 326 9.145865 TCTTTTCTTATTTCTTGCGTTTTGTTT 57.854 25.926 0.00 0.00 0.00 2.83
326 327 8.696410 TCTTTTCTTATTTCTTGCGTTTTGTT 57.304 26.923 0.00 0.00 0.00 2.83
327 328 8.696410 TTCTTTTCTTATTTCTTGCGTTTTGT 57.304 26.923 0.00 0.00 0.00 2.83
408 409 4.141711 GGCCACTCCTTTTCCTTTCTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
409 410 3.388024 GGCCACTCCTTTTCCTTTCTTTT 59.612 43.478 0.00 0.00 0.00 2.27
410 411 2.965831 GGCCACTCCTTTTCCTTTCTTT 59.034 45.455 0.00 0.00 0.00 2.52
411 412 2.091333 TGGCCACTCCTTTTCCTTTCTT 60.091 45.455 0.00 0.00 35.26 2.52
412 413 1.499007 TGGCCACTCCTTTTCCTTTCT 59.501 47.619 0.00 0.00 35.26 2.52
413 414 1.995376 TGGCCACTCCTTTTCCTTTC 58.005 50.000 0.00 0.00 35.26 2.62
414 415 2.039418 GTTGGCCACTCCTTTTCCTTT 58.961 47.619 3.88 0.00 35.26 3.11
415 416 1.217942 AGTTGGCCACTCCTTTTCCTT 59.782 47.619 3.88 0.00 35.26 3.36
416 417 0.853530 AGTTGGCCACTCCTTTTCCT 59.146 50.000 3.88 0.00 35.26 3.36
417 418 2.579410 TAGTTGGCCACTCCTTTTCC 57.421 50.000 3.88 0.00 36.88 3.13
418 419 3.634910 TGTTTAGTTGGCCACTCCTTTTC 59.365 43.478 3.88 0.00 36.88 2.29
419 420 3.637769 TGTTTAGTTGGCCACTCCTTTT 58.362 40.909 3.88 0.00 36.88 2.27
420 421 3.306472 TGTTTAGTTGGCCACTCCTTT 57.694 42.857 3.88 0.00 36.88 3.11
421 422 3.157087 CATGTTTAGTTGGCCACTCCTT 58.843 45.455 3.88 0.00 36.88 3.36
422 423 2.795329 CATGTTTAGTTGGCCACTCCT 58.205 47.619 3.88 4.18 36.88 3.69
423 424 1.202348 GCATGTTTAGTTGGCCACTCC 59.798 52.381 3.88 0.00 36.88 3.85
424 425 1.135689 CGCATGTTTAGTTGGCCACTC 60.136 52.381 3.88 0.98 36.88 3.51
425 426 0.881118 CGCATGTTTAGTTGGCCACT 59.119 50.000 3.88 9.18 39.87 4.00
426 427 0.878416 TCGCATGTTTAGTTGGCCAC 59.122 50.000 3.88 0.00 0.00 5.01
427 428 1.164411 CTCGCATGTTTAGTTGGCCA 58.836 50.000 0.00 0.00 0.00 5.36
428 429 0.179163 GCTCGCATGTTTAGTTGGCC 60.179 55.000 0.00 0.00 0.00 5.36
429 430 0.521291 TGCTCGCATGTTTAGTTGGC 59.479 50.000 0.00 0.00 0.00 4.52
430 431 3.492421 AATGCTCGCATGTTTAGTTGG 57.508 42.857 4.99 0.00 36.68 3.77
431 432 5.827568 AAAAATGCTCGCATGTTTAGTTG 57.172 34.783 16.26 0.00 40.80 3.16
450 451 9.522804 ACTCATTGCAACGAAAACTATTAAAAA 57.477 25.926 0.00 0.00 0.00 1.94
451 452 9.522804 AACTCATTGCAACGAAAACTATTAAAA 57.477 25.926 0.00 0.00 0.00 1.52
453 454 9.820229 CTAACTCATTGCAACGAAAACTATTAA 57.180 29.630 0.00 0.00 0.00 1.40
454 455 8.995220 ACTAACTCATTGCAACGAAAACTATTA 58.005 29.630 0.00 0.00 0.00 0.98
455 456 7.871853 ACTAACTCATTGCAACGAAAACTATT 58.128 30.769 0.00 0.00 0.00 1.73
456 457 7.387948 AGACTAACTCATTGCAACGAAAACTAT 59.612 33.333 0.00 0.00 0.00 2.12
457 458 6.704493 AGACTAACTCATTGCAACGAAAACTA 59.296 34.615 0.00 0.00 0.00 2.24
458 459 5.527582 AGACTAACTCATTGCAACGAAAACT 59.472 36.000 0.00 0.00 0.00 2.66
459 460 5.748592 AGACTAACTCATTGCAACGAAAAC 58.251 37.500 0.00 0.00 0.00 2.43
460 461 6.704493 AGTAGACTAACTCATTGCAACGAAAA 59.296 34.615 0.00 0.00 0.00 2.29
461 462 6.220930 AGTAGACTAACTCATTGCAACGAAA 58.779 36.000 0.00 0.00 0.00 3.46
462 463 5.779922 AGTAGACTAACTCATTGCAACGAA 58.220 37.500 0.00 0.00 0.00 3.85
463 464 5.386958 AGTAGACTAACTCATTGCAACGA 57.613 39.130 0.00 0.00 0.00 3.85
464 465 6.467723 AAAGTAGACTAACTCATTGCAACG 57.532 37.500 0.00 0.00 0.00 4.10
465 466 7.041372 TGGAAAAGTAGACTAACTCATTGCAAC 60.041 37.037 0.00 0.00 29.71 4.17
466 467 6.995686 TGGAAAAGTAGACTAACTCATTGCAA 59.004 34.615 0.00 0.00 29.71 4.08
467 468 6.530120 TGGAAAAGTAGACTAACTCATTGCA 58.470 36.000 0.00 0.00 29.95 4.08
468 469 7.617041 ATGGAAAAGTAGACTAACTCATTGC 57.383 36.000 0.00 0.00 0.00 3.56
478 479 9.959721 ATGTTTGTGTATATGGAAAAGTAGACT 57.040 29.630 0.00 0.00 0.00 3.24
483 484 8.879759 CGAGTATGTTTGTGTATATGGAAAAGT 58.120 33.333 0.00 0.00 0.00 2.66
484 485 9.093970 TCGAGTATGTTTGTGTATATGGAAAAG 57.906 33.333 0.00 0.00 0.00 2.27
485 486 9.438228 TTCGAGTATGTTTGTGTATATGGAAAA 57.562 29.630 0.00 0.00 0.00 2.29
486 487 9.438228 TTTCGAGTATGTTTGTGTATATGGAAA 57.562 29.630 0.00 0.00 0.00 3.13
487 488 9.607988 ATTTCGAGTATGTTTGTGTATATGGAA 57.392 29.630 0.00 0.00 0.00 3.53
491 492 9.982651 AGCTATTTCGAGTATGTTTGTGTATAT 57.017 29.630 0.00 0.00 0.00 0.86
492 493 9.244799 CAGCTATTTCGAGTATGTTTGTGTATA 57.755 33.333 0.00 0.00 0.00 1.47
493 494 7.254455 GCAGCTATTTCGAGTATGTTTGTGTAT 60.254 37.037 0.00 0.00 0.00 2.29
494 495 6.035650 GCAGCTATTTCGAGTATGTTTGTGTA 59.964 38.462 0.00 0.00 0.00 2.90
495 496 5.163854 GCAGCTATTTCGAGTATGTTTGTGT 60.164 40.000 0.00 0.00 0.00 3.72
496 497 5.163864 TGCAGCTATTTCGAGTATGTTTGTG 60.164 40.000 0.00 0.00 0.00 3.33
497 498 4.935205 TGCAGCTATTTCGAGTATGTTTGT 59.065 37.500 0.00 0.00 0.00 2.83
516 517 5.772521 ACAAAGGCAGTAAAAATAGTGCAG 58.227 37.500 15.32 6.57 45.59 4.41
529 530 4.817464 TGTTGTTCGTATAACAAAGGCAGT 59.183 37.500 1.95 0.00 41.23 4.40
530 531 5.144359 GTGTTGTTCGTATAACAAAGGCAG 58.856 41.667 5.96 0.00 41.23 4.85
531 532 4.575236 TGTGTTGTTCGTATAACAAAGGCA 59.425 37.500 5.96 0.00 41.23 4.75
539 541 7.010367 ACGTCTTCTTTTGTGTTGTTCGTATAA 59.990 33.333 0.00 0.00 0.00 0.98
561 563 4.056050 ACCTTACAACATTCTCACACGTC 58.944 43.478 0.00 0.00 0.00 4.34
633 657 3.356290 GCCACCAGAAATTGACCACTAT 58.644 45.455 0.00 0.00 0.00 2.12
638 662 0.251787 AGGGCCACCAGAAATTGACC 60.252 55.000 6.18 0.00 40.13 4.02
670 694 2.202878 GCTTCCTATGTGCGGCGA 60.203 61.111 12.98 0.00 0.00 5.54
761 797 1.730064 GCAAAAATGGACTACTCGCGA 59.270 47.619 9.26 9.26 0.00 5.87
947 1082 3.013921 GTTTTGTGAGTGTGGAAGTGGA 58.986 45.455 0.00 0.00 0.00 4.02
948 1083 2.752354 TGTTTTGTGAGTGTGGAAGTGG 59.248 45.455 0.00 0.00 0.00 4.00
949 1084 4.433186 TTGTTTTGTGAGTGTGGAAGTG 57.567 40.909 0.00 0.00 0.00 3.16
978 1118 2.775911 TTCTTGCACAGATGGAGGAG 57.224 50.000 0.00 0.00 33.74 3.69
979 1119 2.639347 TCTTTCTTGCACAGATGGAGGA 59.361 45.455 0.00 0.00 30.01 3.71
980 1120 3.063510 TCTTTCTTGCACAGATGGAGG 57.936 47.619 0.00 0.00 0.00 4.30
1386 1545 4.020617 CTCACCGGCTTGCTCCCA 62.021 66.667 0.00 0.00 0.00 4.37
1683 1869 0.673985 CGATGAACCTGGCCGAGATA 59.326 55.000 0.00 0.00 0.00 1.98
2299 2509 5.363939 GCTGATAGGTCTGATAACTGCTTT 58.636 41.667 0.00 0.00 0.00 3.51
2307 2526 2.152016 CGGACGCTGATAGGTCTGATA 58.848 52.381 0.00 0.00 41.10 2.15
2320 2539 0.034896 AACCAGAATTGACGGACGCT 59.965 50.000 0.00 0.00 0.00 5.07
2330 2549 4.003648 GACCGTGAGATTCAACCAGAATT 58.996 43.478 0.00 0.00 46.76 2.17
2415 4364 2.770904 GGAGGGGGTTATGGGCGA 60.771 66.667 0.00 0.00 0.00 5.54
2455 4404 4.377760 AGGGTCGGAGCCTCGGAA 62.378 66.667 22.56 0.00 38.74 4.30
2477 4426 5.815814 GCGTGAGGCAAGAGATACGAAGT 62.816 52.174 0.00 0.00 43.84 3.01
2552 4509 1.405872 GATGAAGCATGCAATGGGGA 58.594 50.000 21.98 0.00 46.86 4.81
2586 4543 2.676471 ACGGCGTAGTACGGGGTT 60.676 61.111 23.29 0.00 42.82 4.11
2590 4547 0.302890 CTAGTGACGGCGTAGTACGG 59.697 60.000 23.29 10.71 42.82 4.02
2591 4548 0.302890 CCTAGTGACGGCGTAGTACG 59.697 60.000 14.74 18.37 45.88 3.67
2592 4549 0.659957 CCCTAGTGACGGCGTAGTAC 59.340 60.000 14.74 12.98 0.00 2.73
2593 4550 1.097547 GCCCTAGTGACGGCGTAGTA 61.098 60.000 14.74 8.08 34.94 1.82
2617 4650 4.334552 GGTGTTTTTAGGGGATCGGTTAA 58.665 43.478 0.00 0.00 0.00 2.01
2656 4692 1.358402 CCTCAGAGGAGACGATGCG 59.642 63.158 11.62 0.00 44.26 4.73
2659 4695 0.820871 GTTGCCTCAGAGGAGACGAT 59.179 55.000 21.89 0.00 44.26 3.73
2700 4738 0.709992 AGGGAAAGGGGCTAAATGCA 59.290 50.000 0.00 0.00 45.15 3.96
2702 4740 1.411644 GGGAGGGAAAGGGGCTAAATG 60.412 57.143 0.00 0.00 0.00 2.32
2703 4741 0.934446 GGGAGGGAAAGGGGCTAAAT 59.066 55.000 0.00 0.00 0.00 1.40
2713 4751 0.845102 GGGTGAGGAAGGGAGGGAAA 60.845 60.000 0.00 0.00 0.00 3.13
2715 4753 2.454941 GGGTGAGGAAGGGAGGGA 59.545 66.667 0.00 0.00 0.00 4.20
2727 4765 0.541063 TAGCGACAGTGAAGGGGTGA 60.541 55.000 0.00 0.00 0.00 4.02
2771 4809 3.036429 GCCACCTTCATCGGAGCCT 62.036 63.158 0.00 0.00 0.00 4.58
2777 4815 3.197790 CCGCAGCCACCTTCATCG 61.198 66.667 0.00 0.00 0.00 3.84
2940 4978 1.293179 CAGCAGATGACACCCGACA 59.707 57.895 0.00 0.00 0.00 4.35
2942 4980 2.265739 GCAGCAGATGACACCCGA 59.734 61.111 0.00 0.00 0.00 5.14
3013 5052 3.860125 CGTGGCATGGGTAACGCG 61.860 66.667 3.53 3.53 37.60 6.01
3090 5130 4.153411 AGTAGGACTAAAGTGACACTGCT 58.847 43.478 9.33 2.20 0.00 4.24
3121 5161 2.754946 TTAGGACCTAAACGTGCAGG 57.245 50.000 11.73 12.92 37.97 4.85
3163 5203 4.582701 TGATTGTGCGAAAAAGGATGTT 57.417 36.364 0.00 0.00 0.00 2.71
3166 5206 5.163513 GTGAATGATTGTGCGAAAAAGGAT 58.836 37.500 0.00 0.00 0.00 3.24
3180 5220 3.087031 CCAAGCAGGTCTGTGAATGATT 58.913 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.