Multiple sequence alignment - TraesCS3D01G467100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G467100 chr3D 100.000 3278 0 0 1 3278 570269998 570273275 0.000000e+00 6054.0
1 TraesCS3D01G467100 chr3D 83.733 1377 189 19 926 2278 570278322 570276957 0.000000e+00 1269.0
2 TraesCS3D01G467100 chr3D 76.681 1175 214 37 1063 2213 569976419 569977557 6.050000e-167 597.0
3 TraesCS3D01G467100 chr3D 91.687 409 27 4 2507 2910 454744550 454744144 7.940000e-156 560.0
4 TraesCS3D01G467100 chr3D 75.641 234 30 14 702 914 570278644 570278417 1.250000e-14 91.6
5 TraesCS3D01G467100 chr3B 90.596 2552 164 28 1 2505 757278812 757281334 0.000000e+00 3314.0
6 TraesCS3D01G467100 chr3B 83.893 1490 195 25 926 2386 757457413 757455940 0.000000e+00 1380.0
7 TraesCS3D01G467100 chr3B 83.171 1129 158 24 926 2029 757286644 757285523 0.000000e+00 1003.0
8 TraesCS3D01G467100 chr3B 86.149 296 17 9 3007 3278 757281389 757281684 6.880000e-77 298.0
9 TraesCS3D01G467100 chr3B 88.415 164 13 6 1 164 821441988 821441831 3.340000e-45 193.0
10 TraesCS3D01G467100 chr3B 100.000 33 0 0 882 914 757457546 757457514 9.820000e-06 62.1
11 TraesCS3D01G467100 chr3A 84.441 1459 181 27 926 2364 703134901 703133469 0.000000e+00 1395.0
12 TraesCS3D01G467100 chr3A 82.983 1381 194 23 926 2278 703099557 703098190 0.000000e+00 1210.0
13 TraesCS3D01G467100 chr3A 89.256 968 83 12 1538 2504 703015180 703016127 0.000000e+00 1192.0
14 TraesCS3D01G467100 chr3A 93.649 803 39 3 740 1542 703006349 703007139 0.000000e+00 1190.0
15 TraesCS3D01G467100 chr3A 76.754 1183 214 41 1063 2213 702570444 702571597 3.620000e-169 604.0
16 TraesCS3D01G467100 chr3A 88.943 407 36 8 2507 2910 675122439 675122039 8.170000e-136 494.0
17 TraesCS3D01G467100 chr3A 87.580 314 31 4 428 734 703002705 703003017 1.120000e-94 357.0
18 TraesCS3D01G467100 chr3A 96.078 102 4 0 3177 3278 703035074 703035175 2.020000e-37 167.0
19 TraesCS3D01G467100 chr3A 78.431 102 17 3 1078 1175 21323974 21324074 9.820000e-06 62.1
20 TraesCS3D01G467100 chr4D 89.499 419 34 7 2499 2910 507722086 507721671 3.750000e-144 521.0
21 TraesCS3D01G467100 chr5D 89.951 408 34 4 2507 2909 389749881 389749476 1.350000e-143 520.0
22 TraesCS3D01G467100 chr5D 93.514 185 12 0 177 361 485119496 485119312 3.220000e-70 276.0
23 TraesCS3D01G467100 chr5D 90.909 187 16 1 177 362 482319254 482319068 1.950000e-62 250.0
24 TraesCS3D01G467100 chr1D 89.806 412 30 8 2507 2912 442791822 442791417 4.850000e-143 518.0
25 TraesCS3D01G467100 chr7B 89.372 414 36 5 2504 2910 716701462 716701050 6.270000e-142 514.0
26 TraesCS3D01G467100 chr7B 89.130 414 36 6 2504 2910 716975757 716976168 1.050000e-139 507.0
27 TraesCS3D01G467100 chr7B 92.896 183 13 0 177 359 711532143 711531961 1.940000e-67 267.0
28 TraesCS3D01G467100 chr7B 88.957 163 13 4 1 163 711532357 711532200 2.580000e-46 196.0
29 TraesCS3D01G467100 chr5A 89.136 405 33 9 2507 2904 641587437 641587837 8.170000e-136 494.0
30 TraesCS3D01G467100 chr5A 88.808 411 33 12 2507 2909 509998340 509997935 2.940000e-135 492.0
31 TraesCS3D01G467100 chr7A 95.628 183 8 0 177 359 514661035 514660853 8.890000e-76 294.0
32 TraesCS3D01G467100 chrUn 94.536 183 10 0 177 359 19825968 19825786 1.930000e-72 283.0
33 TraesCS3D01G467100 chrUn 91.463 164 8 4 1 163 19826180 19826022 1.530000e-53 220.0
34 TraesCS3D01G467100 chr2D 94.536 183 10 0 177 359 624242123 624242305 1.930000e-72 283.0
35 TraesCS3D01G467100 chr2D 91.713 181 15 0 179 359 629198714 629198534 5.430000e-63 252.0
36 TraesCS3D01G467100 chr2D 81.250 80 7 8 1101 1175 524087044 524087120 1.270000e-04 58.4
37 TraesCS3D01G467100 chr7D 92.857 182 13 0 177 358 587258386 587258567 6.970000e-67 265.0
38 TraesCS3D01G467100 chr7D 88.889 162 13 5 2 163 24029007 24028851 9.280000e-46 195.0
39 TraesCS3D01G467100 chr1A 90.244 164 10 6 1 163 513246398 513246240 3.310000e-50 209.0
40 TraesCS3D01G467100 chr6D 88.957 163 10 5 1 163 464713262 464713416 9.280000e-46 195.0
41 TraesCS3D01G467100 chr4B 88.415 164 13 4 1 163 672034622 672034780 3.340000e-45 193.0
42 TraesCS3D01G467100 chr4B 87.730 163 14 6 1 163 665969695 665969539 5.590000e-43 185.0
43 TraesCS3D01G467100 chr2A 88.272 162 14 5 2 163 3274371 3274215 4.320000e-44 189.0
44 TraesCS3D01G467100 chr2B 80.000 120 18 5 359 475 363763497 363763613 2.100000e-12 84.2
45 TraesCS3D01G467100 chr2B 100.000 28 0 0 398 425 514960723 514960696 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G467100 chr3D 570269998 570273275 3277 False 6054.00 6054 100.0000 1 3278 1 chr3D.!!$F2 3277
1 TraesCS3D01G467100 chr3D 570276957 570278644 1687 True 680.30 1269 79.6870 702 2278 2 chr3D.!!$R2 1576
2 TraesCS3D01G467100 chr3D 569976419 569977557 1138 False 597.00 597 76.6810 1063 2213 1 chr3D.!!$F1 1150
3 TraesCS3D01G467100 chr3B 757278812 757281684 2872 False 1806.00 3314 88.3725 1 3278 2 chr3B.!!$F1 3277
4 TraesCS3D01G467100 chr3B 757285523 757286644 1121 True 1003.00 1003 83.1710 926 2029 1 chr3B.!!$R1 1103
5 TraesCS3D01G467100 chr3B 757455940 757457546 1606 True 721.05 1380 91.9465 882 2386 2 chr3B.!!$R3 1504
6 TraesCS3D01G467100 chr3A 703133469 703134901 1432 True 1395.00 1395 84.4410 926 2364 1 chr3A.!!$R3 1438
7 TraesCS3D01G467100 chr3A 703098190 703099557 1367 True 1210.00 1210 82.9830 926 2278 1 chr3A.!!$R2 1352
8 TraesCS3D01G467100 chr3A 703015180 703016127 947 False 1192.00 1192 89.2560 1538 2504 1 chr3A.!!$F3 966
9 TraesCS3D01G467100 chr3A 703002705 703007139 4434 False 773.50 1190 90.6145 428 1542 2 chr3A.!!$F5 1114
10 TraesCS3D01G467100 chr3A 702570444 702571597 1153 False 604.00 604 76.7540 1063 2213 1 chr3A.!!$F2 1150

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 464 0.320771 AAAGAGGCGACGTGAATGCT 60.321 50.0 0.0 0.0 0.0 3.79 F
1730 5261 0.469331 TCCCCCGGCTACTACATCAG 60.469 60.0 0.0 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 5394 0.505231 GTCGAACGCGTTGATGAACA 59.495 50.0 31.89 1.49 38.98 3.18 R
2965 6555 0.450184 ACACACACTTTGCGAACACC 59.550 50.0 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.724374 TGTGCTACACAACTAAGTCACC 58.276 45.455 0.00 0.00 41.69 4.02
27 31 4.150897 ACACAACTAAGTCACCACATGT 57.849 40.909 0.00 0.00 0.00 3.21
36 40 8.691661 ACTAAGTCACCACATGTAATTTTCTT 57.308 30.769 0.00 2.67 0.00 2.52
39 43 8.871686 AAGTCACCACATGTAATTTTCTTTTC 57.128 30.769 0.00 0.00 0.00 2.29
43 47 9.883142 TCACCACATGTAATTTTCTTTTCTTTT 57.117 25.926 0.00 0.00 0.00 2.27
75 79 6.470877 TCTTCAAAACAAAACAACATACGAGC 59.529 34.615 0.00 0.00 0.00 5.03
78 82 6.470877 TCAAAACAAAACAACATACGAGCTTC 59.529 34.615 0.00 0.00 0.00 3.86
79 83 5.493133 AACAAAACAACATACGAGCTTCA 57.507 34.783 0.00 0.00 0.00 3.02
105 109 4.734398 TTGCAGGACAACAAAACATTCT 57.266 36.364 0.00 0.00 31.73 2.40
112 116 7.468084 GCAGGACAACAAAACATTCTTACTACA 60.468 37.037 0.00 0.00 0.00 2.74
132 136 8.245195 ACTACAATGTGGGTAAAAACTTTCAT 57.755 30.769 1.07 0.00 0.00 2.57
182 194 7.011950 ACACAAAACATACGAACTTCAATCTGA 59.988 33.333 0.00 0.00 0.00 3.27
242 254 5.592282 TGTCCTGCAAAGTTTCAAGTTCATA 59.408 36.000 0.00 0.00 0.00 2.15
338 350 0.774491 AGGGGGTGTTCCAAAGCCTA 60.774 55.000 0.00 0.00 37.22 3.93
422 434 4.875713 CCGGATTTGGCCCCTCGG 62.876 72.222 0.00 2.73 0.00 4.63
423 435 3.792736 CGGATTTGGCCCCTCGGA 61.793 66.667 0.00 0.00 0.00 4.55
426 438 4.109675 ATTTGGCCCCTCGGACGG 62.110 66.667 0.00 0.00 42.08 4.79
452 464 0.320771 AAAGAGGCGACGTGAATGCT 60.321 50.000 0.00 0.00 0.00 3.79
466 478 4.072131 GTGAATGCTTCCTCACTAAACCA 58.928 43.478 0.00 0.00 39.11 3.67
471 483 4.326826 TGCTTCCTCACTAAACCATTGAG 58.673 43.478 0.00 0.00 37.17 3.02
510 522 2.205074 AGTTTTCGCATGAGCCTATCG 58.795 47.619 0.00 0.00 37.52 2.92
539 551 3.124921 GTGGCGAACATGTCCGGG 61.125 66.667 6.61 0.00 0.00 5.73
548 565 3.673594 CGAACATGTCCGGGCTATATCTC 60.674 52.174 7.97 0.00 0.00 2.75
555 572 3.068562 GGGCTATATCTCCCCGTGT 57.931 57.895 1.60 0.00 36.50 4.49
577 595 6.014156 GTGTATGAGCTTAATATGAGAGGGGT 60.014 42.308 0.00 0.00 0.00 4.95
584 602 2.002505 ATATGAGAGGGGTCGGACAG 57.997 55.000 10.76 0.00 0.00 3.51
684 703 1.834263 AGGTCAGGTTGTAGATGCTCC 59.166 52.381 0.00 0.00 0.00 4.70
692 711 2.010145 TGTAGATGCTCCAAAGTCGC 57.990 50.000 0.00 0.00 0.00 5.19
700 719 1.529826 GCTCCAAAGTCGCGCAATTAG 60.530 52.381 8.75 0.00 0.00 1.73
712 731 1.217882 GCAATTAGTATGCGCGGAGT 58.782 50.000 8.83 0.00 33.57 3.85
742 4092 9.401058 CTGGATCCAAACAGAGTTTATTCTATT 57.599 33.333 17.00 0.00 36.86 1.73
743 4093 9.396022 TGGATCCAAACAGAGTTTATTCTATTC 57.604 33.333 13.46 0.00 0.00 1.75
826 4176 2.752354 AGCTAGCTAGATCCGCTATGTG 59.248 50.000 25.15 5.34 39.09 3.21
945 4407 2.228343 ACTCTGCTCGCCGTATATAACC 59.772 50.000 0.00 0.00 0.00 2.85
1057 4545 1.703438 GCTCTCTGTCCTTGCATGCG 61.703 60.000 14.09 0.00 0.00 4.73
1194 4695 2.184322 CCCATCGTCTGGTCCACG 59.816 66.667 6.14 0.00 44.30 4.94
1319 4820 2.424302 CGACGTCCACAACCCCTT 59.576 61.111 10.58 0.00 0.00 3.95
1323 4824 2.033602 GTCCACAACCCCTTCCGG 59.966 66.667 0.00 0.00 0.00 5.14
1545 5055 3.589654 CTTCAGCCTCGCGTTCCCA 62.590 63.158 5.77 0.00 0.00 4.37
1604 5114 2.725312 CGCTCTGCCTCCCTAGCAA 61.725 63.158 0.00 0.00 40.35 3.91
1730 5261 0.469331 TCCCCCGGCTACTACATCAG 60.469 60.000 0.00 0.00 0.00 2.90
1767 5298 2.767445 CGTGGACGGACTGCGGATA 61.767 63.158 0.00 0.00 35.37 2.59
1997 5562 0.108804 TTCTTCGTGCCGAGGATCAC 60.109 55.000 9.51 0.00 41.24 3.06
2056 5621 0.179156 CATGAACTCCATTGTGCGGC 60.179 55.000 0.00 0.00 31.94 6.53
2289 5860 1.517832 CGCCTAGCCTACTGTTGCT 59.482 57.895 9.10 9.10 41.57 3.91
2290 5861 0.108138 CGCCTAGCCTACTGTTGCTT 60.108 55.000 9.36 0.00 39.00 3.91
2292 5863 2.029838 CCTAGCCTACTGTTGCTTGG 57.970 55.000 14.39 14.39 42.47 3.61
2295 5866 1.059913 AGCCTACTGTTGCTTGGTCT 58.940 50.000 0.00 0.00 32.94 3.85
2298 5869 3.264450 AGCCTACTGTTGCTTGGTCTAAT 59.736 43.478 0.00 0.00 32.94 1.73
2299 5870 4.010349 GCCTACTGTTGCTTGGTCTAATT 58.990 43.478 0.00 0.00 0.00 1.40
2300 5871 5.045869 AGCCTACTGTTGCTTGGTCTAATTA 60.046 40.000 0.00 0.00 32.94 1.40
2301 5872 5.294552 GCCTACTGTTGCTTGGTCTAATTAG 59.705 44.000 6.11 6.11 0.00 1.73
2304 5875 4.455877 ACTGTTGCTTGGTCTAATTAGTGC 59.544 41.667 12.19 10.12 0.00 4.40
2314 5897 4.634443 GGTCTAATTAGTGCGGTGTCATTT 59.366 41.667 12.19 0.00 0.00 2.32
2384 5973 2.364970 CCCTCATTTCCTGCAAACAACA 59.635 45.455 0.00 0.00 0.00 3.33
2386 5975 4.503643 CCCTCATTTCCTGCAAACAACATT 60.504 41.667 0.00 0.00 0.00 2.71
2402 5992 2.247358 ACATTAACCCCAGCACCAAAG 58.753 47.619 0.00 0.00 0.00 2.77
2422 6012 7.504238 ACCAAAGTAAATTACACACATCCAAGA 59.496 33.333 5.89 0.00 0.00 3.02
2492 6082 7.859325 TGTACTTGGCTATTTGACTATTTCC 57.141 36.000 0.00 0.00 0.00 3.13
2499 6089 6.331572 TGGCTATTTGACTATTTCCCATCCTA 59.668 38.462 0.00 0.00 0.00 2.94
2508 6098 9.494055 TGACTATTTCCCATCCTATATAGAAGG 57.506 37.037 11.53 9.21 35.26 3.46
2509 6099 8.862091 ACTATTTCCCATCCTATATAGAAGGG 57.138 38.462 19.93 19.93 34.66 3.95
2510 6100 7.851968 ACTATTTCCCATCCTATATAGAAGGGG 59.148 40.741 12.27 12.27 35.52 4.79
2511 6101 5.914790 TTCCCATCCTATATAGAAGGGGA 57.085 43.478 16.70 16.70 41.42 4.81
2512 6102 5.914790 TCCCATCCTATATAGAAGGGGAA 57.085 43.478 18.13 3.25 40.25 3.97
2513 6103 5.600749 TCCCATCCTATATAGAAGGGGAAC 58.399 45.833 18.13 0.00 40.25 3.62
2514 6104 5.321625 TCCCATCCTATATAGAAGGGGAACT 59.678 44.000 18.13 0.00 40.25 3.01
2515 6105 6.032693 CCCATCCTATATAGAAGGGGAACTT 58.967 44.000 13.14 0.00 43.65 2.66
2516 6106 6.505700 CCCATCCTATATAGAAGGGGAACTTT 59.494 42.308 13.14 0.00 40.21 2.66
2517 6107 7.311360 CCCATCCTATATAGAAGGGGAACTTTC 60.311 44.444 13.14 0.00 46.11 2.62
2522 6112 3.938109 GAAGGGGAACTTTCGCTCT 57.062 52.632 6.06 0.01 40.21 4.09
2524 6114 3.545366 GAAGGGGAACTTTCGCTCTAT 57.455 47.619 6.06 0.00 40.21 1.98
2525 6115 2.990066 AGGGGAACTTTCGCTCTATG 57.010 50.000 6.06 0.00 39.76 2.23
2526 6116 1.486726 AGGGGAACTTTCGCTCTATGG 59.513 52.381 6.06 0.00 39.76 2.74
2527 6117 1.475213 GGGGAACTTTCGCTCTATGGG 60.475 57.143 6.06 0.00 39.76 4.00
2528 6118 1.475213 GGGAACTTTCGCTCTATGGGG 60.475 57.143 0.00 0.00 37.19 4.96
2529 6119 1.485066 GGAACTTTCGCTCTATGGGGA 59.515 52.381 0.00 0.00 0.00 4.81
2530 6120 2.552031 GAACTTTCGCTCTATGGGGAC 58.448 52.381 0.00 0.00 0.00 4.46
2547 6137 5.285401 TGGGGACATATACACCCTATATGG 58.715 45.833 10.62 0.00 43.72 2.74
2588 6178 8.824159 TTCAACAAAAAGTCAAACAATTCTGA 57.176 26.923 0.00 0.00 0.00 3.27
2589 6179 8.824159 TCAACAAAAAGTCAAACAATTCTGAA 57.176 26.923 0.00 0.00 0.00 3.02
2590 6180 9.265901 TCAACAAAAAGTCAAACAATTCTGAAA 57.734 25.926 0.00 0.00 0.00 2.69
2591 6181 9.875675 CAACAAAAAGTCAAACAATTCTGAAAA 57.124 25.926 0.00 0.00 0.00 2.29
2628 6218 7.875327 AAACTTGACCTTACATTGTACTTGT 57.125 32.000 0.00 7.12 0.00 3.16
2629 6219 6.861065 ACTTGACCTTACATTGTACTTGTG 57.139 37.500 10.97 2.63 0.00 3.33
2630 6220 6.588204 ACTTGACCTTACATTGTACTTGTGA 58.412 36.000 10.97 3.85 0.00 3.58
2631 6221 6.706270 ACTTGACCTTACATTGTACTTGTGAG 59.294 38.462 10.97 11.37 32.22 3.51
2632 6222 6.413783 TGACCTTACATTGTACTTGTGAGA 57.586 37.500 17.13 2.08 33.76 3.27
2633 6223 6.822442 TGACCTTACATTGTACTTGTGAGAA 58.178 36.000 17.13 4.11 33.76 2.87
2634 6224 7.276658 TGACCTTACATTGTACTTGTGAGAAA 58.723 34.615 17.13 3.86 33.76 2.52
2635 6225 7.771361 TGACCTTACATTGTACTTGTGAGAAAA 59.229 33.333 17.13 3.59 33.76 2.29
2636 6226 8.691661 ACCTTACATTGTACTTGTGAGAAAAT 57.308 30.769 17.13 0.00 33.76 1.82
2637 6227 9.131791 ACCTTACATTGTACTTGTGAGAAAATT 57.868 29.630 17.13 0.00 33.76 1.82
2638 6228 9.965824 CCTTACATTGTACTTGTGAGAAAATTT 57.034 29.630 17.13 0.00 33.76 1.82
2642 6232 9.301153 ACATTGTACTTGTGAGAAAATTTTCAC 57.699 29.630 28.00 23.04 43.07 3.18
2661 6251 8.642935 TTTTCACAAAAAGAAAATTCCCCTTT 57.357 26.923 0.00 0.00 39.34 3.11
2662 6252 7.622893 TTCACAAAAAGAAAATTCCCCTTTG 57.377 32.000 0.00 9.11 31.30 2.77
2663 6253 6.951971 TCACAAAAAGAAAATTCCCCTTTGA 58.048 32.000 14.23 0.67 31.30 2.69
2664 6254 6.821160 TCACAAAAAGAAAATTCCCCTTTGAC 59.179 34.615 14.23 0.00 31.30 3.18
2665 6255 6.823182 CACAAAAAGAAAATTCCCCTTTGACT 59.177 34.615 14.23 0.00 31.30 3.41
2666 6256 7.336679 CACAAAAAGAAAATTCCCCTTTGACTT 59.663 33.333 14.23 0.00 31.30 3.01
2667 6257 7.552687 ACAAAAAGAAAATTCCCCTTTGACTTC 59.447 33.333 14.23 0.00 31.30 3.01
2668 6258 7.437713 AAAAGAAAATTCCCCTTTGACTTCT 57.562 32.000 0.00 0.00 31.30 2.85
2669 6259 7.437713 AAAGAAAATTCCCCTTTGACTTCTT 57.562 32.000 0.00 0.00 0.00 2.52
2670 6260 6.656632 AGAAAATTCCCCTTTGACTTCTTC 57.343 37.500 0.00 0.00 0.00 2.87
2671 6261 6.377080 AGAAAATTCCCCTTTGACTTCTTCT 58.623 36.000 0.00 0.00 0.00 2.85
2672 6262 6.491745 AGAAAATTCCCCTTTGACTTCTTCTC 59.508 38.462 0.00 0.00 0.00 2.87
2673 6263 5.324832 AATTCCCCTTTGACTTCTTCTCA 57.675 39.130 0.00 0.00 0.00 3.27
2674 6264 4.788925 TTCCCCTTTGACTTCTTCTCAA 57.211 40.909 0.00 0.00 0.00 3.02
2675 6265 4.788925 TCCCCTTTGACTTCTTCTCAAA 57.211 40.909 0.00 0.00 36.44 2.69
2676 6266 5.124036 TCCCCTTTGACTTCTTCTCAAAA 57.876 39.130 0.00 0.00 37.22 2.44
2677 6267 5.515106 TCCCCTTTGACTTCTTCTCAAAAA 58.485 37.500 0.00 0.00 37.22 1.94
2703 6293 9.665719 AAGACAAAATTTTGGTCAAAATAGTGT 57.334 25.926 29.37 23.09 46.76 3.55
2704 6294 9.097257 AGACAAAATTTTGGTCAAAATAGTGTG 57.903 29.630 29.37 17.68 46.76 3.82
2705 6295 9.092876 GACAAAATTTTGGTCAAAATAGTGTGA 57.907 29.630 29.37 3.73 46.76 3.58
2706 6296 9.442047 ACAAAATTTTGGTCAAAATAGTGTGAA 57.558 25.926 29.37 1.24 46.76 3.18
2710 6300 9.612066 AATTTTGGTCAAAATAGTGTGAATTGT 57.388 25.926 18.37 0.67 46.76 2.71
2711 6301 8.417780 TTTTGGTCAAAATAGTGTGAATTGTG 57.582 30.769 4.92 0.00 35.57 3.33
2712 6302 6.951062 TGGTCAAAATAGTGTGAATTGTGA 57.049 33.333 0.00 0.00 29.90 3.58
2713 6303 6.734137 TGGTCAAAATAGTGTGAATTGTGAC 58.266 36.000 9.61 9.61 45.14 3.67
2715 6305 6.970484 GTCAAAATAGTGTGAATTGTGACCT 58.030 36.000 7.57 0.00 42.21 3.85
2716 6306 8.094798 GTCAAAATAGTGTGAATTGTGACCTA 57.905 34.615 7.57 0.00 42.21 3.08
2717 6307 8.730680 GTCAAAATAGTGTGAATTGTGACCTAT 58.269 33.333 7.57 0.00 42.21 2.57
2718 6308 9.952030 TCAAAATAGTGTGAATTGTGACCTATA 57.048 29.630 0.00 0.00 27.86 1.31
2723 6313 9.712305 ATAGTGTGAATTGTGACCTATAATAGC 57.288 33.333 0.00 0.00 0.00 2.97
2724 6314 7.564793 AGTGTGAATTGTGACCTATAATAGCA 58.435 34.615 0.00 0.00 0.00 3.49
2725 6315 8.046708 AGTGTGAATTGTGACCTATAATAGCAA 58.953 33.333 0.00 0.00 0.00 3.91
2726 6316 8.673711 GTGTGAATTGTGACCTATAATAGCAAA 58.326 33.333 0.00 0.00 0.00 3.68
2727 6317 9.407380 TGTGAATTGTGACCTATAATAGCAAAT 57.593 29.630 0.00 0.00 0.00 2.32
2746 6336 8.667076 AGCAAATAAATTTTGTCTTTTCTGCT 57.333 26.923 0.00 0.00 0.00 4.24
2747 6337 8.553696 AGCAAATAAATTTTGTCTTTTCTGCTG 58.446 29.630 0.00 0.00 0.00 4.41
2748 6338 8.337532 GCAAATAAATTTTGTCTTTTCTGCTGT 58.662 29.630 0.00 0.00 0.00 4.40
2749 6339 9.640974 CAAATAAATTTTGTCTTTTCTGCTGTG 57.359 29.630 0.00 0.00 0.00 3.66
2750 6340 9.598517 AAATAAATTTTGTCTTTTCTGCTGTGA 57.401 25.926 0.00 0.00 0.00 3.58
2751 6341 9.598517 AATAAATTTTGTCTTTTCTGCTGTGAA 57.401 25.926 0.00 0.00 0.00 3.18
2752 6342 7.529880 AAATTTTGTCTTTTCTGCTGTGAAG 57.470 32.000 0.00 0.00 0.00 3.02
2753 6343 5.643379 TTTTGTCTTTTCTGCTGTGAAGT 57.357 34.783 7.93 0.00 0.00 3.01
2754 6344 4.882671 TTGTCTTTTCTGCTGTGAAGTC 57.117 40.909 7.93 4.78 0.00 3.01
2755 6345 3.872696 TGTCTTTTCTGCTGTGAAGTCA 58.127 40.909 7.93 6.59 0.00 3.41
2756 6346 4.260985 TGTCTTTTCTGCTGTGAAGTCAA 58.739 39.130 7.93 0.00 0.00 3.18
2757 6347 4.094887 TGTCTTTTCTGCTGTGAAGTCAAC 59.905 41.667 7.93 2.63 0.00 3.18
2758 6348 3.309682 TCTTTTCTGCTGTGAAGTCAACG 59.690 43.478 7.93 0.00 0.00 4.10
2759 6349 2.309528 TTCTGCTGTGAAGTCAACGT 57.690 45.000 0.00 0.00 0.00 3.99
2760 6350 2.309528 TCTGCTGTGAAGTCAACGTT 57.690 45.000 0.00 0.00 0.00 3.99
2761 6351 1.933181 TCTGCTGTGAAGTCAACGTTG 59.067 47.619 22.35 22.35 0.00 4.10
2762 6352 1.003545 CTGCTGTGAAGTCAACGTTGG 60.004 52.381 27.02 10.17 0.00 3.77
2763 6353 1.014352 GCTGTGAAGTCAACGTTGGT 58.986 50.000 27.02 12.89 0.00 3.67
2764 6354 1.400494 GCTGTGAAGTCAACGTTGGTT 59.600 47.619 27.02 20.09 36.63 3.67
2765 6355 2.159435 GCTGTGAAGTCAACGTTGGTTT 60.159 45.455 27.02 20.33 32.98 3.27
2766 6356 3.672241 GCTGTGAAGTCAACGTTGGTTTT 60.672 43.478 27.02 18.03 32.98 2.43
2767 6357 4.481463 CTGTGAAGTCAACGTTGGTTTTT 58.519 39.130 27.02 15.76 32.98 1.94
2803 6393 8.943909 ATATACTAGTGCAAAAGTAAGTCCAC 57.056 34.615 5.39 0.00 32.24 4.02
2804 6394 5.291905 ACTAGTGCAAAAGTAAGTCCACT 57.708 39.130 0.00 0.00 37.34 4.00
2805 6395 5.681639 ACTAGTGCAAAAGTAAGTCCACTT 58.318 37.500 0.00 0.00 40.49 3.16
2807 6397 7.277396 ACTAGTGCAAAAGTAAGTCCACTTTA 58.723 34.615 0.00 0.00 45.68 1.85
2808 6398 7.937394 ACTAGTGCAAAAGTAAGTCCACTTTAT 59.063 33.333 0.00 0.00 45.68 1.40
2809 6399 7.582667 AGTGCAAAAGTAAGTCCACTTTATT 57.417 32.000 0.00 0.00 45.68 1.40
2810 6400 7.649057 AGTGCAAAAGTAAGTCCACTTTATTC 58.351 34.615 0.00 0.00 45.68 1.75
2811 6401 7.502561 AGTGCAAAAGTAAGTCCACTTTATTCT 59.497 33.333 0.00 0.00 45.68 2.40
2812 6402 8.780249 GTGCAAAAGTAAGTCCACTTTATTCTA 58.220 33.333 0.00 0.00 45.68 2.10
2813 6403 9.344772 TGCAAAAGTAAGTCCACTTTATTCTAA 57.655 29.630 0.00 0.00 45.68 2.10
2895 6485 4.374399 GGTGTATATACAACCAGGAACCG 58.626 47.826 18.58 0.00 37.94 4.44
2896 6486 4.099881 GGTGTATATACAACCAGGAACCGA 59.900 45.833 18.58 0.00 37.94 4.69
2897 6487 5.395546 GGTGTATATACAACCAGGAACCGAA 60.396 44.000 18.58 0.00 37.94 4.30
2898 6488 5.751990 GTGTATATACAACCAGGAACCGAAG 59.248 44.000 17.07 0.00 38.04 3.79
2899 6489 5.422970 TGTATATACAACCAGGAACCGAAGT 59.577 40.000 13.24 0.00 32.40 3.01
2900 6490 2.536761 TACAACCAGGAACCGAAGTG 57.463 50.000 0.00 0.00 0.00 3.16
2901 6491 0.544697 ACAACCAGGAACCGAAGTGT 59.455 50.000 0.00 0.00 0.00 3.55
2902 6492 1.764134 ACAACCAGGAACCGAAGTGTA 59.236 47.619 0.00 0.00 0.00 2.90
2903 6493 2.370849 ACAACCAGGAACCGAAGTGTAT 59.629 45.455 0.00 0.00 0.00 2.29
2904 6494 3.000727 CAACCAGGAACCGAAGTGTATC 58.999 50.000 0.00 0.00 0.00 2.24
2905 6495 2.537143 ACCAGGAACCGAAGTGTATCT 58.463 47.619 0.00 0.00 0.00 1.98
2906 6496 2.496470 ACCAGGAACCGAAGTGTATCTC 59.504 50.000 0.00 0.00 0.00 2.75
2907 6497 2.159085 CCAGGAACCGAAGTGTATCTCC 60.159 54.545 0.00 0.00 0.00 3.71
2908 6498 2.108970 AGGAACCGAAGTGTATCTCCC 58.891 52.381 0.00 0.00 0.00 4.30
2909 6499 1.829222 GGAACCGAAGTGTATCTCCCA 59.171 52.381 0.00 0.00 0.00 4.37
2910 6500 2.434702 GGAACCGAAGTGTATCTCCCAT 59.565 50.000 0.00 0.00 0.00 4.00
2911 6501 3.492829 GGAACCGAAGTGTATCTCCCATC 60.493 52.174 0.00 0.00 0.00 3.51
2912 6502 2.040178 ACCGAAGTGTATCTCCCATCC 58.960 52.381 0.00 0.00 0.00 3.51
2913 6503 2.320781 CCGAAGTGTATCTCCCATCCT 58.679 52.381 0.00 0.00 0.00 3.24
2914 6504 2.036475 CCGAAGTGTATCTCCCATCCTG 59.964 54.545 0.00 0.00 0.00 3.86
2915 6505 2.695666 CGAAGTGTATCTCCCATCCTGT 59.304 50.000 0.00 0.00 0.00 4.00
2916 6506 3.889538 CGAAGTGTATCTCCCATCCTGTA 59.110 47.826 0.00 0.00 0.00 2.74
2917 6507 4.524714 CGAAGTGTATCTCCCATCCTGTAT 59.475 45.833 0.00 0.00 0.00 2.29
2918 6508 5.710567 CGAAGTGTATCTCCCATCCTGTATA 59.289 44.000 0.00 0.00 0.00 1.47
2924 6514 4.741928 TCTCCCATCCTGTATAGCACTA 57.258 45.455 0.00 0.00 0.00 2.74
2931 6521 5.635280 CCATCCTGTATAGCACTATCAAACG 59.365 44.000 0.00 0.00 0.00 3.60
2932 6522 5.196341 TCCTGTATAGCACTATCAAACGG 57.804 43.478 0.00 0.00 0.00 4.44
2941 6531 2.872245 CACTATCAAACGGCCATGTAGG 59.128 50.000 2.24 0.00 41.84 3.18
2948 6538 1.502690 ACGGCCATGTAGGTTCCATA 58.497 50.000 2.24 0.00 40.61 2.74
2965 6555 3.119245 TCCATAACCTTTCGTCGAAGAGG 60.119 47.826 23.30 23.30 44.69 3.69
2976 6566 0.105224 TCGAAGAGGGTGTTCGCAAA 59.895 50.000 1.59 0.00 45.14 3.68
2989 6579 3.623510 TGTTCGCAAAGTGTGTGTATGAA 59.376 39.130 0.00 0.00 38.94 2.57
2990 6580 4.274705 TGTTCGCAAAGTGTGTGTATGAAT 59.725 37.500 0.00 0.00 38.94 2.57
2991 6581 5.467063 TGTTCGCAAAGTGTGTGTATGAATA 59.533 36.000 0.00 0.00 38.94 1.75
2992 6582 6.148645 TGTTCGCAAAGTGTGTGTATGAATAT 59.851 34.615 0.00 0.00 38.94 1.28
2993 6583 6.344572 TCGCAAAGTGTGTGTATGAATATC 57.655 37.500 0.00 0.00 38.94 1.63
2994 6584 5.293324 TCGCAAAGTGTGTGTATGAATATCC 59.707 40.000 0.00 0.00 38.94 2.59
2995 6585 5.504010 CGCAAAGTGTGTGTATGAATATCCC 60.504 44.000 0.00 0.00 32.74 3.85
2996 6586 5.504010 GCAAAGTGTGTGTATGAATATCCCG 60.504 44.000 0.00 0.00 0.00 5.14
2997 6587 5.607939 AAGTGTGTGTATGAATATCCCGA 57.392 39.130 0.00 0.00 0.00 5.14
2998 6588 5.808366 AGTGTGTGTATGAATATCCCGAT 57.192 39.130 0.00 0.00 0.00 4.18
2999 6589 5.784177 AGTGTGTGTATGAATATCCCGATC 58.216 41.667 0.00 0.00 0.00 3.69
3000 6590 5.304357 AGTGTGTGTATGAATATCCCGATCA 59.696 40.000 0.00 0.00 0.00 2.92
3001 6591 5.989168 GTGTGTGTATGAATATCCCGATCAA 59.011 40.000 0.00 0.00 0.00 2.57
3002 6592 6.481976 GTGTGTGTATGAATATCCCGATCAAA 59.518 38.462 0.00 0.00 0.00 2.69
3003 6593 7.011950 GTGTGTGTATGAATATCCCGATCAAAA 59.988 37.037 0.00 0.00 0.00 2.44
3004 6594 7.554476 TGTGTGTATGAATATCCCGATCAAAAA 59.446 33.333 0.00 0.00 0.00 1.94
3057 6647 5.336945 TCTCTTCTATGTCCCATCCCATAG 58.663 45.833 0.00 0.00 41.13 2.23
3072 6662 6.426587 CATCCCATAGAAAAGAAAAGGGAGA 58.573 40.000 0.00 0.00 46.15 3.71
3079 6669 6.455690 AGAAAAGAAAAGGGAGATGGTACT 57.544 37.500 0.00 0.00 0.00 2.73
3081 6671 6.273495 AGAAAAGAAAAGGGAGATGGTACTCT 59.727 38.462 0.00 0.00 37.13 3.24
3143 6733 6.719301 TCCAATTAAATGGTGCCAAATCAAT 58.281 32.000 9.41 0.00 41.46 2.57
3148 6738 9.902684 AATTAAATGGTGCCAAATCAATTATCA 57.097 25.926 0.00 0.00 0.00 2.15
3165 6755 8.859090 TCAATTATCAAAGTGTTGTCCTGAAAT 58.141 29.630 0.00 0.00 36.07 2.17
3216 6830 2.029380 TCGAGATGTTCTTTCGGCTGAA 60.029 45.455 3.13 3.13 35.21 3.02
3220 6834 1.512926 TGTTCTTTCGGCTGAAGCTC 58.487 50.000 8.23 2.05 41.70 4.09
3236 6850 1.818642 GCTCTGGCTCTGAAACATGT 58.181 50.000 0.00 0.00 35.22 3.21
3254 6868 6.749923 ACATGTTTTGCTCTTAGGAGAATC 57.250 37.500 5.96 0.00 41.86 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.297547 ACATGTGGTGACTTAGTTGTGTAG 58.702 41.667 0.00 0.00 0.00 2.74
12 13 9.965824 AAAAGAAAATTACATGTGGTGACTTAG 57.034 29.630 9.11 0.00 0.00 2.18
16 17 8.871686 AAGAAAAGAAAATTACATGTGGTGAC 57.128 30.769 9.11 0.00 0.00 3.67
39 43 9.928236 TGTTTTGTTTTGAAGAAACAGAAAAAG 57.072 25.926 8.54 0.00 40.70 2.27
43 47 8.425577 TGTTGTTTTGTTTTGAAGAAACAGAA 57.574 26.923 4.75 4.46 41.37 3.02
45 49 9.739786 GTATGTTGTTTTGTTTTGAAGAAACAG 57.260 29.630 4.75 0.00 41.37 3.16
47 51 8.640291 TCGTATGTTGTTTTGTTTTGAAGAAAC 58.360 29.630 0.00 0.00 33.72 2.78
50 54 6.470877 GCTCGTATGTTGTTTTGTTTTGAAGA 59.529 34.615 0.00 0.00 0.00 2.87
51 55 6.472163 AGCTCGTATGTTGTTTTGTTTTGAAG 59.528 34.615 0.00 0.00 0.00 3.02
52 56 6.326375 AGCTCGTATGTTGTTTTGTTTTGAA 58.674 32.000 0.00 0.00 0.00 2.69
53 57 5.885881 AGCTCGTATGTTGTTTTGTTTTGA 58.114 33.333 0.00 0.00 0.00 2.69
54 58 6.252441 TGAAGCTCGTATGTTGTTTTGTTTTG 59.748 34.615 0.00 0.00 0.00 2.44
55 59 6.326375 TGAAGCTCGTATGTTGTTTTGTTTT 58.674 32.000 0.00 0.00 0.00 2.43
56 60 5.885881 TGAAGCTCGTATGTTGTTTTGTTT 58.114 33.333 0.00 0.00 0.00 2.83
57 61 5.493133 TGAAGCTCGTATGTTGTTTTGTT 57.507 34.783 0.00 0.00 0.00 2.83
58 62 5.493133 TTGAAGCTCGTATGTTGTTTTGT 57.507 34.783 0.00 0.00 0.00 2.83
59 63 5.971202 AGTTTGAAGCTCGTATGTTGTTTTG 59.029 36.000 0.00 0.00 0.00 2.44
64 68 4.379793 GCAAAGTTTGAAGCTCGTATGTTG 59.620 41.667 19.82 0.00 0.00 3.33
75 79 4.108699 TGTTGTCCTGCAAAGTTTGAAG 57.891 40.909 19.82 17.73 39.03 3.02
78 82 4.450419 TGTTTTGTTGTCCTGCAAAGTTTG 59.550 37.500 11.41 11.41 39.03 2.93
79 83 4.636249 TGTTTTGTTGTCCTGCAAAGTTT 58.364 34.783 0.00 0.00 39.03 2.66
105 109 9.186837 TGAAAGTTTTTACCCACATTGTAGTAA 57.813 29.630 7.26 7.26 0.00 2.24
140 144 8.549338 TGTTTTGTGTATATTTATGTCGGACA 57.451 30.769 14.01 14.01 0.00 4.02
214 226 4.021544 ACTTGAAACTTTGCAGGACAACAA 60.022 37.500 0.00 0.00 38.23 2.83
272 284 6.808829 TCAAGATTCATGCAAGAACTTTTGT 58.191 32.000 6.50 0.00 0.00 2.83
277 289 6.657966 TCTTCATCAAGATTCATGCAAGAACT 59.342 34.615 6.50 3.99 33.38 3.01
287 299 6.183360 GCCATCCATTTCTTCATCAAGATTCA 60.183 38.462 0.00 0.00 38.50 2.57
338 350 4.764823 TCCGGTTAACATTTGAGAAAGCAT 59.235 37.500 8.10 0.00 0.00 3.79
351 363 0.612453 GCCCCCATTTCCGGTTAACA 60.612 55.000 8.10 0.00 0.00 2.41
380 392 6.205658 GCTATTTAAGATGGATGACAAGGGAC 59.794 42.308 0.00 0.00 0.00 4.46
418 430 2.745884 TTTGGCATGCCGTCCGAG 60.746 61.111 30.87 0.00 39.42 4.63
419 431 2.745884 CTTTGGCATGCCGTCCGA 60.746 61.111 30.87 11.18 39.42 4.55
420 432 2.745884 TCTTTGGCATGCCGTCCG 60.746 61.111 30.87 18.67 39.42 4.79
422 434 3.190878 CCTCTTTGGCATGCCGTC 58.809 61.111 30.87 8.93 39.42 4.79
433 445 0.320771 AGCATTCACGTCGCCTCTTT 60.321 50.000 0.00 0.00 0.00 2.52
466 478 1.678970 GTTTGCGGGGGAGCTCAAT 60.679 57.895 17.19 0.00 38.13 2.57
510 522 0.669318 TTCGCCACATCGGACTGAAC 60.669 55.000 0.00 0.00 36.56 3.18
539 551 3.181485 GCTCATACACGGGGAGATATAGC 60.181 52.174 0.00 0.00 0.00 2.97
548 565 5.047306 TCTCATATTAAGCTCATACACGGGG 60.047 44.000 0.00 0.00 0.00 5.73
552 569 6.014156 ACCCCTCTCATATTAAGCTCATACAC 60.014 42.308 0.00 0.00 0.00 2.90
553 570 6.084738 ACCCCTCTCATATTAAGCTCATACA 58.915 40.000 0.00 0.00 0.00 2.29
554 571 6.613153 ACCCCTCTCATATTAAGCTCATAC 57.387 41.667 0.00 0.00 0.00 2.39
555 572 5.419155 CGACCCCTCTCATATTAAGCTCATA 59.581 44.000 0.00 0.00 0.00 2.15
577 595 0.461548 CAAGCATCTAGGCTGTCCGA 59.538 55.000 0.00 0.00 45.07 4.55
584 602 0.394565 ATCCGACCAAGCATCTAGGC 59.605 55.000 0.00 0.00 0.00 3.93
638 656 4.143333 CCTGAACGTCCGGGCGAT 62.143 66.667 38.47 26.56 35.59 4.58
684 703 3.029074 GCATACTAATTGCGCGACTTTG 58.971 45.455 12.10 2.88 0.00 2.77
700 719 0.941463 CCAGATCACTCCGCGCATAC 60.941 60.000 8.75 0.00 0.00 2.39
712 731 4.916041 AACTCTGTTTGGATCCAGATCA 57.084 40.909 15.53 13.74 39.54 2.92
742 4092 6.038936 TGTCAAACGGTCGATCAATCTATAGA 59.961 38.462 4.57 4.57 0.00 1.98
743 4093 6.206498 TGTCAAACGGTCGATCAATCTATAG 58.794 40.000 0.00 0.00 0.00 1.31
745 4095 5.006153 TGTCAAACGGTCGATCAATCTAT 57.994 39.130 0.00 0.00 0.00 1.98
797 4147 3.181501 CGGATCTAGCTAGCTGATAGTGC 60.182 52.174 27.68 13.90 36.18 4.40
826 4176 1.135083 TGCTCTAGTTTACTGCTCCGC 60.135 52.381 0.00 0.00 0.00 5.54
843 4200 1.741732 GCCATGAACGATGAGTCTGCT 60.742 52.381 0.00 0.00 33.31 4.24
945 4407 1.214589 GAGGTGCCATTGCTTGCTG 59.785 57.895 0.00 0.00 38.71 4.41
1529 5039 4.069232 CTGGGAACGCGAGGCTGA 62.069 66.667 15.93 0.00 0.00 4.26
1599 5109 2.033448 CCGTTGCCTGGGTTGCTA 59.967 61.111 0.00 0.00 0.00 3.49
1779 5310 3.932580 GATGGTGAGCGGTGCGTGA 62.933 63.158 0.00 0.00 0.00 4.35
1850 5394 0.505231 GTCGAACGCGTTGATGAACA 59.495 50.000 31.89 1.49 38.98 3.18
1922 5487 3.671411 ACAGCTCGAACGGCGACT 61.671 61.111 16.62 0.00 45.59 4.18
2079 5647 1.737363 GCCTTCATCTCGACGAAAGCT 60.737 52.381 0.00 0.00 0.00 3.74
2289 5860 3.007074 TGACACCGCACTAATTAGACCAA 59.993 43.478 19.38 0.00 0.00 3.67
2290 5861 2.563620 TGACACCGCACTAATTAGACCA 59.436 45.455 19.38 1.80 0.00 4.02
2292 5863 5.796350 AAATGACACCGCACTAATTAGAC 57.204 39.130 19.38 9.43 0.00 2.59
2295 5866 5.950758 ACAAAATGACACCGCACTAATTA 57.049 34.783 0.00 0.00 0.00 1.40
2298 5869 3.793801 GCAACAAAATGACACCGCACTAA 60.794 43.478 0.00 0.00 0.00 2.24
2299 5870 2.287308 GCAACAAAATGACACCGCACTA 60.287 45.455 0.00 0.00 0.00 2.74
2300 5871 1.535860 GCAACAAAATGACACCGCACT 60.536 47.619 0.00 0.00 0.00 4.40
2301 5872 0.852136 GCAACAAAATGACACCGCAC 59.148 50.000 0.00 0.00 0.00 5.34
2304 5875 2.126467 CCAAGCAACAAAATGACACCG 58.874 47.619 0.00 0.00 0.00 4.94
2314 5897 4.987912 GGAAATTCGAAATCCAAGCAACAA 59.012 37.500 21.97 0.00 33.30 2.83
2368 5953 5.304778 GGGTTAATGTTGTTTGCAGGAAAT 58.695 37.500 0.00 0.00 0.00 2.17
2384 5973 2.694616 ACTTTGGTGCTGGGGTTAAT 57.305 45.000 0.00 0.00 0.00 1.40
2386 5975 3.596940 TTTACTTTGGTGCTGGGGTTA 57.403 42.857 0.00 0.00 0.00 2.85
2402 5992 6.894828 ACGTTCTTGGATGTGTGTAATTTAC 58.105 36.000 0.00 0.00 0.00 2.01
2422 6012 3.075148 TGACTTCTCAGATCTCGACGTT 58.925 45.455 0.00 0.00 0.00 3.99
2492 6082 7.575499 AAAGTTCCCCTTCTATATAGGATGG 57.425 40.000 9.89 7.57 34.56 3.51
2499 6089 4.902448 AGAGCGAAAGTTCCCCTTCTATAT 59.098 41.667 0.00 0.00 42.90 0.86
2504 6094 3.198872 CATAGAGCGAAAGTTCCCCTTC 58.801 50.000 0.00 0.00 42.90 3.46
2505 6095 2.092914 CCATAGAGCGAAAGTTCCCCTT 60.093 50.000 0.00 0.00 42.90 3.95
2506 6096 1.486726 CCATAGAGCGAAAGTTCCCCT 59.513 52.381 0.00 0.00 42.90 4.79
2507 6097 1.475213 CCCATAGAGCGAAAGTTCCCC 60.475 57.143 0.00 0.00 42.90 4.81
2508 6098 1.475213 CCCCATAGAGCGAAAGTTCCC 60.475 57.143 0.00 0.00 42.90 3.97
2509 6099 1.485066 TCCCCATAGAGCGAAAGTTCC 59.515 52.381 0.00 0.00 42.90 3.62
2510 6100 2.093658 TGTCCCCATAGAGCGAAAGTTC 60.094 50.000 0.00 0.00 42.14 3.01
2511 6101 1.906574 TGTCCCCATAGAGCGAAAGTT 59.093 47.619 0.00 0.00 0.00 2.66
2512 6102 1.568504 TGTCCCCATAGAGCGAAAGT 58.431 50.000 0.00 0.00 0.00 2.66
2513 6103 2.918712 ATGTCCCCATAGAGCGAAAG 57.081 50.000 0.00 0.00 0.00 2.62
2514 6104 4.836175 TGTATATGTCCCCATAGAGCGAAA 59.164 41.667 0.00 0.00 36.99 3.46
2515 6105 4.219944 GTGTATATGTCCCCATAGAGCGAA 59.780 45.833 0.00 0.00 36.99 4.70
2516 6106 3.762288 GTGTATATGTCCCCATAGAGCGA 59.238 47.826 0.00 0.00 36.99 4.93
2517 6107 3.119101 GGTGTATATGTCCCCATAGAGCG 60.119 52.174 0.00 0.00 36.99 5.03
2518 6108 3.197983 GGGTGTATATGTCCCCATAGAGC 59.802 52.174 0.00 0.00 36.99 4.09
2519 6109 4.689062 AGGGTGTATATGTCCCCATAGAG 58.311 47.826 7.81 0.00 41.95 2.43
2520 6110 4.777877 AGGGTGTATATGTCCCCATAGA 57.222 45.455 7.81 0.00 41.95 1.98
2521 6111 7.235606 CCATATAGGGTGTATATGTCCCCATAG 59.764 44.444 9.92 1.79 41.95 2.23
2522 6112 7.079700 CCATATAGGGTGTATATGTCCCCATA 58.920 42.308 9.92 5.63 41.95 2.74
2523 6113 5.911178 CCATATAGGGTGTATATGTCCCCAT 59.089 44.000 9.92 3.97 41.95 4.00
2524 6114 5.285401 CCATATAGGGTGTATATGTCCCCA 58.715 45.833 9.92 0.00 41.95 4.96
2525 6115 5.888982 CCATATAGGGTGTATATGTCCCC 57.111 47.826 9.92 3.47 41.95 4.81
2562 6152 9.434420 TCAGAATTGTTTGACTTTTTGTTGAAT 57.566 25.926 0.00 0.00 0.00 2.57
2563 6153 8.824159 TCAGAATTGTTTGACTTTTTGTTGAA 57.176 26.923 0.00 0.00 0.00 2.69
2564 6154 8.824159 TTCAGAATTGTTTGACTTTTTGTTGA 57.176 26.923 0.00 0.00 0.00 3.18
2565 6155 9.875675 TTTTCAGAATTGTTTGACTTTTTGTTG 57.124 25.926 0.00 0.00 0.00 3.33
2602 6192 9.569122 ACAAGTACAATGTAAGGTCAAGTTTAT 57.431 29.630 0.00 0.00 0.00 1.40
2603 6193 8.832521 CACAAGTACAATGTAAGGTCAAGTTTA 58.167 33.333 0.00 0.00 0.00 2.01
2604 6194 7.554835 TCACAAGTACAATGTAAGGTCAAGTTT 59.445 33.333 0.00 0.00 0.00 2.66
2605 6195 7.051623 TCACAAGTACAATGTAAGGTCAAGTT 58.948 34.615 0.00 0.00 0.00 2.66
2606 6196 6.588204 TCACAAGTACAATGTAAGGTCAAGT 58.412 36.000 0.00 0.00 0.00 3.16
2607 6197 6.929049 TCTCACAAGTACAATGTAAGGTCAAG 59.071 38.462 0.00 0.00 0.00 3.02
2608 6198 6.822442 TCTCACAAGTACAATGTAAGGTCAA 58.178 36.000 0.00 0.00 0.00 3.18
2609 6199 6.413783 TCTCACAAGTACAATGTAAGGTCA 57.586 37.500 0.00 0.00 0.00 4.02
2610 6200 7.724305 TTTCTCACAAGTACAATGTAAGGTC 57.276 36.000 0.00 0.00 0.00 3.85
2611 6201 8.691661 ATTTTCTCACAAGTACAATGTAAGGT 57.308 30.769 0.00 0.00 0.00 3.50
2612 6202 9.965824 AAATTTTCTCACAAGTACAATGTAAGG 57.034 29.630 0.00 0.00 0.00 2.69
2616 6206 9.301153 GTGAAAATTTTCTCACAAGTACAATGT 57.699 29.630 26.73 0.00 41.35 2.71
2617 6207 9.299963 TGTGAAAATTTTCTCACAAGTACAATG 57.700 29.630 26.73 0.00 46.74 2.82
2636 6226 8.518702 CAAAGGGGAATTTTCTTTTTGTGAAAA 58.481 29.630 0.00 0.00 44.23 2.29
2637 6227 7.885399 TCAAAGGGGAATTTTCTTTTTGTGAAA 59.115 29.630 11.01 0.00 0.00 2.69
2638 6228 7.335673 GTCAAAGGGGAATTTTCTTTTTGTGAA 59.664 33.333 11.01 0.00 0.00 3.18
2639 6229 6.821160 GTCAAAGGGGAATTTTCTTTTTGTGA 59.179 34.615 11.01 0.00 0.00 3.58
2640 6230 6.823182 AGTCAAAGGGGAATTTTCTTTTTGTG 59.177 34.615 11.01 0.00 0.00 3.33
2641 6231 6.957631 AGTCAAAGGGGAATTTTCTTTTTGT 58.042 32.000 11.01 0.00 0.00 2.83
2642 6232 7.770433 AGAAGTCAAAGGGGAATTTTCTTTTTG 59.230 33.333 0.00 0.00 0.00 2.44
2643 6233 7.861629 AGAAGTCAAAGGGGAATTTTCTTTTT 58.138 30.769 0.00 0.00 0.00 1.94
2644 6234 7.437713 AGAAGTCAAAGGGGAATTTTCTTTT 57.562 32.000 0.00 0.00 0.00 2.27
2645 6235 7.345653 AGAAGAAGTCAAAGGGGAATTTTCTTT 59.654 33.333 0.00 0.00 28.09 2.52
2646 6236 6.841229 AGAAGAAGTCAAAGGGGAATTTTCTT 59.159 34.615 0.00 0.00 28.09 2.52
2647 6237 6.377080 AGAAGAAGTCAAAGGGGAATTTTCT 58.623 36.000 0.00 0.00 0.00 2.52
2648 6238 6.265422 TGAGAAGAAGTCAAAGGGGAATTTTC 59.735 38.462 0.00 0.00 0.00 2.29
2649 6239 6.136155 TGAGAAGAAGTCAAAGGGGAATTTT 58.864 36.000 0.00 0.00 0.00 1.82
2650 6240 5.705400 TGAGAAGAAGTCAAAGGGGAATTT 58.295 37.500 0.00 0.00 0.00 1.82
2651 6241 5.324832 TGAGAAGAAGTCAAAGGGGAATT 57.675 39.130 0.00 0.00 0.00 2.17
2652 6242 5.324832 TTGAGAAGAAGTCAAAGGGGAAT 57.675 39.130 0.00 0.00 30.89 3.01
2653 6243 4.788925 TTGAGAAGAAGTCAAAGGGGAA 57.211 40.909 0.00 0.00 30.89 3.97
2654 6244 4.788925 TTTGAGAAGAAGTCAAAGGGGA 57.211 40.909 0.00 0.00 38.66 4.81
2655 6245 5.852282 TTTTTGAGAAGAAGTCAAAGGGG 57.148 39.130 0.00 0.00 43.11 4.79
2677 6267 9.665719 ACACTATTTTGACCAAAATTTTGTCTT 57.334 25.926 25.25 12.12 45.67 3.01
2678 6268 9.097257 CACACTATTTTGACCAAAATTTTGTCT 57.903 29.630 25.25 12.77 45.67 3.41
2679 6269 9.092876 TCACACTATTTTGACCAAAATTTTGTC 57.907 29.630 25.25 21.48 45.67 3.18
2680 6270 9.442047 TTCACACTATTTTGACCAAAATTTTGT 57.558 25.926 25.25 19.70 45.67 2.83
2684 6274 9.612066 ACAATTCACACTATTTTGACCAAAATT 57.388 25.926 21.25 6.37 45.67 1.82
2686 6276 8.253810 TCACAATTCACACTATTTTGACCAAAA 58.746 29.630 9.94 9.94 43.48 2.44
2687 6277 7.704472 GTCACAATTCACACTATTTTGACCAAA 59.296 33.333 0.00 0.00 37.00 3.28
2688 6278 7.199766 GTCACAATTCACACTATTTTGACCAA 58.800 34.615 0.00 0.00 37.00 3.67
2689 6279 6.734137 GTCACAATTCACACTATTTTGACCA 58.266 36.000 0.00 0.00 37.00 4.02
2690 6280 6.149633 GGTCACAATTCACACTATTTTGACC 58.850 40.000 14.51 14.51 46.81 4.02
2691 6281 6.970484 AGGTCACAATTCACACTATTTTGAC 58.030 36.000 0.00 0.00 39.89 3.18
2692 6282 8.862325 ATAGGTCACAATTCACACTATTTTGA 57.138 30.769 0.00 0.00 0.00 2.69
2697 6287 9.712305 GCTATTATAGGTCACAATTCACACTAT 57.288 33.333 1.12 0.00 0.00 2.12
2698 6288 8.700973 TGCTATTATAGGTCACAATTCACACTA 58.299 33.333 1.12 0.00 0.00 2.74
2699 6289 7.564793 TGCTATTATAGGTCACAATTCACACT 58.435 34.615 1.12 0.00 0.00 3.55
2700 6290 7.786178 TGCTATTATAGGTCACAATTCACAC 57.214 36.000 1.12 0.00 0.00 3.82
2701 6291 8.800370 TTTGCTATTATAGGTCACAATTCACA 57.200 30.769 1.12 0.00 0.00 3.58
2720 6310 9.762933 AGCAGAAAAGACAAAATTTATTTGCTA 57.237 25.926 0.00 0.00 33.16 3.49
2721 6311 8.553696 CAGCAGAAAAGACAAAATTTATTTGCT 58.446 29.630 0.00 0.00 34.20 3.91
2722 6312 8.337532 ACAGCAGAAAAGACAAAATTTATTTGC 58.662 29.630 0.00 0.00 32.93 3.68
2723 6313 9.640974 CACAGCAGAAAAGACAAAATTTATTTG 57.359 29.630 0.00 0.00 35.64 2.32
2724 6314 9.598517 TCACAGCAGAAAAGACAAAATTTATTT 57.401 25.926 0.00 0.00 0.00 1.40
2725 6315 9.598517 TTCACAGCAGAAAAGACAAAATTTATT 57.401 25.926 0.00 0.00 0.00 1.40
2726 6316 9.252962 CTTCACAGCAGAAAAGACAAAATTTAT 57.747 29.630 0.00 0.00 0.00 1.40
2727 6317 8.250332 ACTTCACAGCAGAAAAGACAAAATTTA 58.750 29.630 0.00 0.00 0.00 1.40
2728 6318 7.099120 ACTTCACAGCAGAAAAGACAAAATTT 58.901 30.769 0.00 0.00 0.00 1.82
2729 6319 6.633856 ACTTCACAGCAGAAAAGACAAAATT 58.366 32.000 0.00 0.00 0.00 1.82
2730 6320 6.127647 TGACTTCACAGCAGAAAAGACAAAAT 60.128 34.615 0.00 0.00 0.00 1.82
2731 6321 5.182950 TGACTTCACAGCAGAAAAGACAAAA 59.817 36.000 0.00 0.00 0.00 2.44
2732 6322 4.699735 TGACTTCACAGCAGAAAAGACAAA 59.300 37.500 0.00 0.00 0.00 2.83
2733 6323 4.260985 TGACTTCACAGCAGAAAAGACAA 58.739 39.130 0.00 0.00 0.00 3.18
2734 6324 3.872696 TGACTTCACAGCAGAAAAGACA 58.127 40.909 0.00 0.00 0.00 3.41
2735 6325 4.592179 GTTGACTTCACAGCAGAAAAGAC 58.408 43.478 0.00 0.00 0.00 3.01
2736 6326 3.309682 CGTTGACTTCACAGCAGAAAAGA 59.690 43.478 0.00 0.00 0.00 2.52
2737 6327 3.063997 ACGTTGACTTCACAGCAGAAAAG 59.936 43.478 0.00 0.00 0.00 2.27
2738 6328 3.006940 ACGTTGACTTCACAGCAGAAAA 58.993 40.909 0.00 0.00 0.00 2.29
2739 6329 2.627945 ACGTTGACTTCACAGCAGAAA 58.372 42.857 0.00 0.00 0.00 2.52
2740 6330 2.309528 ACGTTGACTTCACAGCAGAA 57.690 45.000 0.00 0.00 0.00 3.02
2741 6331 1.933181 CAACGTTGACTTCACAGCAGA 59.067 47.619 23.90 0.00 0.00 4.26
2742 6332 1.003545 CCAACGTTGACTTCACAGCAG 60.004 52.381 29.35 4.16 0.00 4.24
2743 6333 1.013596 CCAACGTTGACTTCACAGCA 58.986 50.000 29.35 0.00 0.00 4.41
2744 6334 1.014352 ACCAACGTTGACTTCACAGC 58.986 50.000 29.35 0.00 0.00 4.40
2745 6335 3.757745 AAACCAACGTTGACTTCACAG 57.242 42.857 29.35 12.16 30.72 3.66
2746 6336 4.506886 AAAAACCAACGTTGACTTCACA 57.493 36.364 29.35 0.00 30.72 3.58
2778 6368 8.759782 AGTGGACTTACTTTTGCACTAGTATAT 58.240 33.333 7.69 1.03 42.04 0.86
2779 6369 8.130671 AGTGGACTTACTTTTGCACTAGTATA 57.869 34.615 7.69 0.00 42.04 1.47
2780 6370 7.005709 AGTGGACTTACTTTTGCACTAGTAT 57.994 36.000 7.69 0.00 42.04 2.12
2781 6371 6.415206 AGTGGACTTACTTTTGCACTAGTA 57.585 37.500 0.00 3.57 42.04 1.82
2782 6372 5.291905 AGTGGACTTACTTTTGCACTAGT 57.708 39.130 5.34 5.34 42.04 2.57
2783 6373 6.619801 AAAGTGGACTTACTTTTGCACTAG 57.380 37.500 0.00 0.00 45.85 2.57
2784 6374 8.685838 AATAAAGTGGACTTACTTTTGCACTA 57.314 30.769 8.91 0.00 45.85 2.74
2785 6375 7.502561 AGAATAAAGTGGACTTACTTTTGCACT 59.497 33.333 8.91 0.00 45.85 4.40
2786 6376 7.649057 AGAATAAAGTGGACTTACTTTTGCAC 58.351 34.615 8.91 0.00 45.85 4.57
2787 6377 7.817418 AGAATAAAGTGGACTTACTTTTGCA 57.183 32.000 8.91 0.00 45.85 4.08
2865 6455 7.622081 TCCTGGTTGTATATACACCCTATATGG 59.378 40.741 24.87 18.54 39.28 2.74
2866 6456 8.603898 TCCTGGTTGTATATACACCCTATATG 57.396 38.462 24.87 12.05 39.28 1.78
2867 6457 9.043548 GTTCCTGGTTGTATATACACCCTATAT 57.956 37.037 24.87 0.00 39.28 0.86
2868 6458 7.455638 GGTTCCTGGTTGTATATACACCCTATA 59.544 40.741 24.87 11.03 39.28 1.31
2869 6459 6.271624 GGTTCCTGGTTGTATATACACCCTAT 59.728 42.308 24.87 0.00 39.28 2.57
2870 6460 5.603813 GGTTCCTGGTTGTATATACACCCTA 59.396 44.000 24.87 13.50 39.28 3.53
2871 6461 4.411212 GGTTCCTGGTTGTATATACACCCT 59.589 45.833 24.87 0.00 39.28 4.34
2872 6462 4.711399 GGTTCCTGGTTGTATATACACCC 58.289 47.826 19.76 19.76 39.02 4.61
2873 6463 4.099881 TCGGTTCCTGGTTGTATATACACC 59.900 45.833 15.20 17.88 35.64 4.16
2874 6464 5.266733 TCGGTTCCTGGTTGTATATACAC 57.733 43.478 15.20 10.24 35.64 2.90
2875 6465 5.422970 ACTTCGGTTCCTGGTTGTATATACA 59.577 40.000 11.62 11.62 0.00 2.29
2876 6466 5.751990 CACTTCGGTTCCTGGTTGTATATAC 59.248 44.000 5.89 5.89 0.00 1.47
2877 6467 5.422970 ACACTTCGGTTCCTGGTTGTATATA 59.577 40.000 0.00 0.00 0.00 0.86
2878 6468 4.224370 ACACTTCGGTTCCTGGTTGTATAT 59.776 41.667 0.00 0.00 0.00 0.86
2879 6469 3.579586 ACACTTCGGTTCCTGGTTGTATA 59.420 43.478 0.00 0.00 0.00 1.47
2880 6470 2.370849 ACACTTCGGTTCCTGGTTGTAT 59.629 45.455 0.00 0.00 0.00 2.29
2881 6471 1.764134 ACACTTCGGTTCCTGGTTGTA 59.236 47.619 0.00 0.00 0.00 2.41
2882 6472 0.544697 ACACTTCGGTTCCTGGTTGT 59.455 50.000 0.00 0.00 0.00 3.32
2883 6473 2.536761 TACACTTCGGTTCCTGGTTG 57.463 50.000 0.00 0.00 0.00 3.77
2884 6474 2.904434 AGATACACTTCGGTTCCTGGTT 59.096 45.455 0.00 0.00 0.00 3.67
2885 6475 2.496470 GAGATACACTTCGGTTCCTGGT 59.504 50.000 0.00 0.00 0.00 4.00
2886 6476 2.159085 GGAGATACACTTCGGTTCCTGG 60.159 54.545 0.00 0.00 0.00 4.45
2887 6477 2.159085 GGGAGATACACTTCGGTTCCTG 60.159 54.545 0.00 0.00 0.00 3.86
2888 6478 2.108970 GGGAGATACACTTCGGTTCCT 58.891 52.381 0.00 0.00 0.00 3.36
2889 6479 1.829222 TGGGAGATACACTTCGGTTCC 59.171 52.381 0.00 0.00 0.00 3.62
2890 6480 3.492829 GGATGGGAGATACACTTCGGTTC 60.493 52.174 0.00 0.00 0.00 3.62
2891 6481 2.434702 GGATGGGAGATACACTTCGGTT 59.565 50.000 0.00 0.00 0.00 4.44
2892 6482 2.040178 GGATGGGAGATACACTTCGGT 58.960 52.381 0.00 0.00 0.00 4.69
2893 6483 2.036475 CAGGATGGGAGATACACTTCGG 59.964 54.545 0.00 0.00 0.00 4.30
2894 6484 2.695666 ACAGGATGGGAGATACACTTCG 59.304 50.000 0.00 0.00 43.62 3.79
2895 6485 6.350612 GCTATACAGGATGGGAGATACACTTC 60.351 46.154 0.00 0.00 43.62 3.01
2896 6486 5.482175 GCTATACAGGATGGGAGATACACTT 59.518 44.000 0.00 0.00 43.62 3.16
2897 6487 5.020132 GCTATACAGGATGGGAGATACACT 58.980 45.833 0.00 0.00 43.62 3.55
2898 6488 4.772624 TGCTATACAGGATGGGAGATACAC 59.227 45.833 0.00 0.00 43.62 2.90
2899 6489 4.772624 GTGCTATACAGGATGGGAGATACA 59.227 45.833 0.00 0.00 43.62 2.29
2900 6490 5.020132 AGTGCTATACAGGATGGGAGATAC 58.980 45.833 0.00 0.00 43.62 2.24
2901 6491 5.276694 AGTGCTATACAGGATGGGAGATA 57.723 43.478 0.00 0.00 43.62 1.98
2902 6492 4.139162 AGTGCTATACAGGATGGGAGAT 57.861 45.455 0.00 0.00 43.62 2.75
2903 6493 3.619900 AGTGCTATACAGGATGGGAGA 57.380 47.619 0.00 0.00 43.62 3.71
2904 6494 5.019470 TGATAGTGCTATACAGGATGGGAG 58.981 45.833 0.00 0.00 43.62 4.30
2905 6495 5.010708 TGATAGTGCTATACAGGATGGGA 57.989 43.478 0.00 0.00 43.62 4.37
2906 6496 5.745312 TTGATAGTGCTATACAGGATGGG 57.255 43.478 0.00 0.00 43.62 4.00
2907 6497 5.635280 CGTTTGATAGTGCTATACAGGATGG 59.365 44.000 0.00 0.00 43.62 3.51
2908 6498 5.635280 CCGTTTGATAGTGCTATACAGGATG 59.365 44.000 0.00 0.00 46.00 3.51
2909 6499 5.784177 CCGTTTGATAGTGCTATACAGGAT 58.216 41.667 0.00 0.00 0.00 3.24
2910 6500 4.500887 GCCGTTTGATAGTGCTATACAGGA 60.501 45.833 0.00 0.00 0.00 3.86
2911 6501 3.741344 GCCGTTTGATAGTGCTATACAGG 59.259 47.826 0.00 0.00 0.00 4.00
2912 6502 3.741344 GGCCGTTTGATAGTGCTATACAG 59.259 47.826 0.00 0.00 0.00 2.74
2913 6503 3.133183 TGGCCGTTTGATAGTGCTATACA 59.867 43.478 0.00 0.00 0.00 2.29
2914 6504 3.724374 TGGCCGTTTGATAGTGCTATAC 58.276 45.455 0.00 0.00 0.00 1.47
2915 6505 4.202315 ACATGGCCGTTTGATAGTGCTATA 60.202 41.667 0.00 0.00 0.00 1.31
2916 6506 3.141398 CATGGCCGTTTGATAGTGCTAT 58.859 45.455 0.00 0.00 0.00 2.97
2917 6507 2.093181 ACATGGCCGTTTGATAGTGCTA 60.093 45.455 0.00 0.00 0.00 3.49
2918 6508 1.340017 ACATGGCCGTTTGATAGTGCT 60.340 47.619 0.00 0.00 0.00 4.40
2924 6514 2.365582 GAACCTACATGGCCGTTTGAT 58.634 47.619 0.00 0.00 40.22 2.57
2941 6531 4.240096 TCTTCGACGAAAGGTTATGGAAC 58.760 43.478 12.03 0.00 34.56 3.62
2948 6538 1.046204 ACCCTCTTCGACGAAAGGTT 58.954 50.000 24.43 15.48 0.00 3.50
2959 6549 1.264288 CACTTTGCGAACACCCTCTTC 59.736 52.381 0.00 0.00 0.00 2.87
2960 6550 1.308998 CACTTTGCGAACACCCTCTT 58.691 50.000 0.00 0.00 0.00 2.85
2965 6555 0.450184 ACACACACTTTGCGAACACC 59.550 50.000 0.00 0.00 0.00 4.16
2976 6566 5.304357 TGATCGGGATATTCATACACACACT 59.696 40.000 0.00 0.00 0.00 3.55
3005 6595 9.507329 GGATATCATATTCATACACACACCTTT 57.493 33.333 4.83 0.00 0.00 3.11
3006 6596 8.884323 AGGATATCATATTCATACACACACCTT 58.116 33.333 4.83 0.00 0.00 3.50
3007 6597 8.441311 AGGATATCATATTCATACACACACCT 57.559 34.615 4.83 0.00 0.00 4.00
3008 6598 8.535335 AGAGGATATCATATTCATACACACACC 58.465 37.037 4.83 0.00 0.00 4.16
3009 6599 9.579768 GAGAGGATATCATATTCATACACACAC 57.420 37.037 4.83 0.00 0.00 3.82
3010 6600 9.539194 AGAGAGGATATCATATTCATACACACA 57.461 33.333 4.83 0.00 0.00 3.72
3012 6602 9.987726 AGAGAGAGGATATCATATTCATACACA 57.012 33.333 4.83 0.00 0.00 3.72
3021 6611 9.866655 GGACATAGAAGAGAGAGGATATCATAT 57.133 37.037 4.83 0.00 0.00 1.78
3057 6647 6.477253 AGAGTACCATCTCCCTTTTCTTTTC 58.523 40.000 0.00 0.00 35.28 2.29
3072 6662 4.036027 CCGTACATTGACGTAGAGTACCAT 59.964 45.833 11.86 0.00 41.31 3.55
3079 6669 6.855836 AGTTTAATCCGTACATTGACGTAGA 58.144 36.000 0.00 0.00 41.31 2.59
3081 6671 8.243426 AGTAAGTTTAATCCGTACATTGACGTA 58.757 33.333 0.00 0.00 41.31 3.57
3143 6733 8.690884 TGAAATTTCAGGACAACACTTTGATAA 58.309 29.630 16.91 0.00 33.26 1.75
3148 6738 7.169158 TCTTGAAATTTCAGGACAACACTTT 57.831 32.000 24.49 0.00 38.22 2.66
3187 6801 4.740695 CGAAAGAACATCTCGAACCCTATC 59.259 45.833 0.00 0.00 34.52 2.08
3188 6802 4.441634 CCGAAAGAACATCTCGAACCCTAT 60.442 45.833 0.00 0.00 34.52 2.57
3216 6830 5.231561 AAAACATGTTTCAGAGCCAGAGCT 61.232 41.667 23.47 1.02 41.43 4.09
3220 6834 3.054878 GCAAAACATGTTTCAGAGCCAG 58.945 45.455 23.47 8.05 31.45 4.85
3227 6841 6.061441 TCTCCTAAGAGCAAAACATGTTTCA 58.939 36.000 23.47 3.65 40.22 2.69
3228 6842 6.560253 TCTCCTAAGAGCAAAACATGTTTC 57.440 37.500 23.47 12.49 40.22 2.78
3236 6850 5.195940 CCATGGATTCTCCTAAGAGCAAAA 58.804 41.667 5.56 0.00 40.22 2.44
3254 6868 3.091545 ACAACTCTATTGCAACCCATGG 58.908 45.455 4.14 4.14 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.